RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|255764491|ref|YP_003065078.2| hypothetical protein
CLIBASIA_02760 [Candidatus Liberibacter asiaticus str. psy62]
         (55 letters)



>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 27.9 bits (61), Expect = 0.57
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 9/36 (25%)

Query: 22  GRPYNGLGKRLEKYNNQRTQQ--DGKQIREKYVTQM 55
           GRPY G       + + +T++  D K ++ KY T +
Sbjct: 870 GRPYTG-------WVDSKTKEPVDDKDVKAKYETSI 898


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 444,414
Number of extensions: 13296
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 55
Length of database: 5,693,230
Length adjustment: 27
Effective length of query: 28
Effective length of database: 5,038,642
Effective search space: 141081976
Effective search space used: 141081976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.6 bits)