Query gi|255764492|ref|YP_003065069.2| hypothetical protein CLIBASIA_02715 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 56
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 14:47:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764492.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2awi_A PRGX; repressor, phero 55.6 9.6 0.00028 19.6 2.7 27 12-38 97-123 (144)
2 >2j7n_A RNA-dependent RNA poly 13.9 62 0.0018 15.4 0.7 40 2-43 344-383 (415)
3 >1r4p_A Sltii A subunit, shiga 12.3 1.1E+02 0.0034 14.1 1.7 15 15-29 10-24 (111)
4 >2vha_A Periplasmic binding tr 10.1 1.1E+02 0.0034 14.1 1.1 25 30-54 17-42 (46)
5 >2yu1_A JMJC domain-containing 8.0 1.8E+02 0.0055 13.0 3.2 48 5-52 62-116 (128)
6 >1jhg_A Trp operon repressor; 7.9 1.5E+02 0.0044 13.5 1.0 13 18-30 1-13 (65)
7 >1pzr_A Erythronolide synthase 6.9 2.1E+02 0.0062 12.7 1.9 21 10-30 28-52 (60)
8 >1we6_A Splicing factor, putat 6.3 2.1E+02 0.0061 12.7 1.1 21 16-36 26-46 (86)
9 >3bm3_A PSPGI restriction endo 6.0 2E+02 0.0059 12.8 0.8 10 29-38 14-23 (126)
10 >3frw_A Putative Trp repressor 5.9 2.1E+02 0.0064 12.6 1.0 13 18-30 15-27 (84)
No 1
>>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} (A:174-317)
Probab=55.61 E-value=9.6 Score=19.63 Aligned_cols=27 Identities=37% Similarity=0.544 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 357888899776446543058757876
Q gi|255764492|r 12 GDKIKSTVDELNSISSRRQNIPPSSVI 38 (56)
Q Consensus 12 gdkikstvdelnsissrrqnippssvi 38 (56)
-|--++-|.||.+||.|..-.||+++-
T Consensus 97 ~dty~~Lv~Elt~Is~kEnF~~P~~~~ 123 (144)
T 2awi_A 97 EDIHRSLVEELTKISAKEKFTPPKEVT 123 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTTCBCCHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 999999999999975124446740345
No 2
>>2j7n_A RNA-dependent RNA polymerase; RNAI response, hypothetical protein, RNA-directed RNA polymerase, hydrolase; 2.30A {Neurospora crassa} PDB: 2j7o_A (A:1-295,A:649-768)
Probab=13.90 E-value=62 Score=15.44 Aligned_cols=40 Identities=35% Similarity=0.348 Sum_probs=27.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 322253200035788889977644654305875787688763
Q gi|255764492|r 2 LIQNNLTSCTGDKIKSTVDELNSISSRRQNIPPSSVISDLVV 43 (56)
Q Consensus 2 liqnnltsctgdkikstvdelnsissrrqnippssvisdlvv 43 (56)
+-+++|--||-.|-|-.-+| |+|+|.+- |--|...|.||-
T Consensus 344 m~~s~LG~CT~~~EklcY~e-n~I~s~~a-v~Ls~Lls~LVD 383 (415)
T 2j7n_A 344 LQPNFLGMCTNYKERLCYIN-NSVSNKPA-IILSSLVGNLVD 383 (415)
T ss_dssp TSCCHHHHHHHHHHHHHHHH-TCSSSHHH-HHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHC-CCCCCHHH-HHHHHHHHHHCC
T ss_conf 55358999999999987502-79999889-999999987707
No 3
>>1r4p_A Sltii A subunit, shiga-like toxin type II A subunit; AB5 toxin; HET: 1PS; 1.77A {Escherichia coli} (A:1-111)
Probab=12.32 E-value=1.1e+02 Score=14.07 Aligned_cols=15 Identities=40% Similarity=0.386 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 888899776446543
Q gi|255764492|r 15 IKSTVDELNSISSRR 29 (56)
Q Consensus 15 ikstvdelnsissrr 29 (56)
-|+-||.||+|-++-
T Consensus 10 ~ksYVdSLn~IRsai 24 (111)
T 1r4p_A 10 QQSYVSSLNSIRTEI 24 (111)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 777999999999974
No 4
>>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.0A {Shigella flexneri} PDB: 2ia4_A* (A:242-287)
Probab=10.09 E-value=1.1e+02 Score=14.06 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.4
Q ss_pred HCCCHHHHHHHHHHCCCCCC-CHHHH
Q ss_conf 05875787688763822201-52653
Q gi|255764492|r 30 QNIPPSSVISDLVVHPHEKK-EPKKH 54 (56)
Q Consensus 30 qnippssvisdlvvhphekk-epkkh 54 (56)
-|.|.|..+-++.-+|..+- ||...
T Consensus 17 Ln~PmS~~lk~~~~~P~Dk~~e~~~y 42 (46)
T 2vha_A 17 MNFELSDEMKALFKEPNDKALNLEHH 42 (46)
T ss_dssp CCCCCCHHHHHHHHSCCCCCC--C--
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 58868799999871998532021023
No 5
>>2yu1_A JMJC domain-containing histone demethylation protein 1A; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A (A:324-451)
Probab=8.00 E-value=1.8e+02 Score=12.97 Aligned_cols=48 Identities=23% Similarity=0.470 Sum_probs=34.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHH--HHCCCCCCCHH
Q ss_conf 25320003578888997764465430587-----57876887--63822201526
Q gi|255764492|r 5 NNLTSCTGDKIKSTVDELNSISSRRQNIP-----PSSVISDL--VVHPHEKKEPK 52 (56)
Q Consensus 5 nnltsctgdkikstvdelnsissrrqnip-----pssvisdl--vvhphekkepk 52 (56)
-.||+---.-++.-|+.|.|.-+.+.|+| |...|.|+ ++.-|....|+
T Consensus 62 vhLT~~El~GL~~lv~~LeslP~~KK~vP~gI~dp~aLi~dvk~ll~~H~~Ddp~ 116 (128)
T 2yu1_A 62 VHLTHFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKILLEELANSDPK 116 (128)
T ss_dssp CCCCHHHHHHHHHHHHHHHTSCGGGCCCCSSBSCHHHHHHHHHHHHHHSSSCCHH
T ss_pred CCCCHHHHCCHHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 4464766435899999998676777547642259899999999999973479711
No 6
>>1jhg_A Trp operon repressor; complex (regulatory protein/peptide), DNA-binding regulatory protein; HET: TRP; 1.30A {Escherichia coli} (A:37-101)
Probab=7.88 E-value=1.5e+02 Score=13.46 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8997764465430
Q gi|255764492|r 18 TVDELNSISSRRQ 30 (56)
Q Consensus 18 tvdelnsissrrq 30 (56)
|++|+++++.|-+
T Consensus 1 T~~E~~al~qR~~ 13 (65)
T 1jhg_A 1 TPDEREALGTRVR 13 (65)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999999
No 7
>>1pzr_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} (A:)
Probab=6.90 E-value=2.1e+02 Score=12.68 Aligned_cols=21 Identities=43% Similarity=0.637 Sum_probs=15.6
Q ss_pred CCHHH----HHHHHHHHHHHHHHHH
Q ss_conf 00357----8888997764465430
Q gi|255764492|r 10 CTGDK----IKSTVDELNSISSRRQ 30 (56)
Q Consensus 10 ctgdk----ikstvdelnsissrrq 30 (56)
.|.|| +|.||.||.|++.|-.
T Consensus 28 mtedkLRRYLkRTv~eLdsVtaRLr 52 (60)
T 1pzr_A 28 MTEEKLRRYLKRTVTELDSVTARLR 52 (60)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7799999999998888999999999
No 8
>>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} (A:26-111)
Probab=6.33 E-value=2.1e+02 Score=12.70 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHH
Q ss_conf 888997764465430587578
Q gi|255764492|r 16 KSTVDELNSISSRRQNIPPSS 36 (56)
Q Consensus 16 kstvdelnsissrrqnippss 36 (56)
..||.+|-..-+.+.+|||+.
T Consensus 26 ~~tV~~lK~~i~~~~gip~~~ 46 (86)
T 1we6_A 26 SENVGSLKEKIAGEIQIPANK 46 (86)
T ss_dssp SSBHHHHHHHHHHHTTCCTTT
T ss_pred CCHHHHHHHHHHHHHCCCHHH
T ss_conf 537999999999997987678
No 9
>>3bm3_A PSPGI restriction endonuclease; endonuclease-DNA complex, restriction enzyme, PSPGI, base flipping, hydrolase/DNA complex; HET: DNA MSE CIT; 1.70A {Pyrococcus SP} (A:1-126)
Probab=5.96 E-value=2e+02 Score=12.79 Aligned_cols=10 Identities=60% Similarity=0.999 Sum_probs=5.2
Q ss_pred HHCCCHHHHH
Q ss_conf 3058757876
Q gi|255764492|r 29 RQNIPPSSVI 38 (56)
Q Consensus 29 rqnippssvi 38 (56)
.|||||..-|
T Consensus 14 tqnipptnei 23 (126)
T 3bm3_A 14 TQNIPPTNEI 23 (126)
T ss_dssp GGGSCCHHHH
T ss_pred CCCCCCHHHH
T ss_conf 0139955257
No 10
>>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A (A:24-107)
Probab=5.93 E-value=2.1e+02 Score=12.63 Aligned_cols=13 Identities=46% Similarity=0.590 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8997764465430
Q gi|255764492|r 18 TVDELNSISSRRQ 30 (56)
Q Consensus 18 tvdelnsissrrq 30 (56)
|++|+++++.|-+
T Consensus 15 T~~E~~al~qR~~ 27 (84)
T 3frw_A 15 TINELLSLSQRFE 27 (84)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999999
Done!