Query gi|255764492|ref|YP_003065069.2| hypothetical protein CLIBASIA_02715 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 56 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 17:40:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764492.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1d8b_A SGS1 RECQ helicase; fiv 12.2 60 0.0025 14.7 1.0 30 17-46 7-39 (81) 2 1wud_A ATP-dependent DNA helic 7.9 61 0.0026 14.7 -0.2 27 23-49 23-49 (89) 3 2faz_A Ubiquitin-like containi 7.2 1.4E+02 0.006 12.8 1.5 21 17-37 25-45 (78) 4 3bid_A UPF0339 protein NMB1088 6.9 33 0.0014 16.0 -2.0 41 5-46 21-61 (64) 5 1pzr_A Erythronolide synthase; 6.9 1.5E+02 0.0062 12.7 1.9 21 10-30 28-52 (60) 6 2e1f_A Werner syndrome ATP-dep 6.8 75 0.0032 14.2 -0.2 28 25-52 27-54 (103) 7 3ke4_A Hypothetical cytosolic 6.7 1.4E+02 0.0058 12.9 1.1 12 16-27 50-61 (213) 8 2ah6_A BH1595, unknown conserv 6.5 1.4E+02 0.0057 12.9 1.0 13 16-28 42-54 (208) 9 1r48_A Proline/betaine transpo 5.4 1.8E+02 0.0076 12.2 1.6 15 10-24 1-15 (33) 10 2nt8_A Cobalamin adenosyltrans 5.2 1.8E+02 0.0076 12.2 1.0 11 16-26 66-76 (223) No 1 >1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1 Probab=12.24 E-value=60 Score=14.72 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=19.0 Q ss_pred HHHHHHHHH---HHHHHCCCHHHHHHHHHHCCC Q ss_conf 889977644---654305875787688763822 Q gi|255764492|r 17 STVDELNSI---SSRRQNIPPSSVISDLVVHPH 46 (56) Q Consensus 17 stvdelnsi---ssrrqnippssvisdlvvhph 46 (56) +.-++|... -++..|+||..|++|-+..-- T Consensus 7 ~~ye~Lr~~R~~lA~~~~vP~~~I~~d~~L~~i 39 (81) T 1d8b_A 7 MTYERLRELSLNLGNRMVPPVGNFMPDSILKKM 39 (81) T ss_dssp HHHHHHHHHHHHHHHSSSSCCSCSSCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH T ss_conf 999999999999998709797466669999999 No 2 >1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1 Probab=7.95 E-value=61 Score=14.69 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=17.4 Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCCC Q ss_conf 644654305875787688763822201 Q gi|255764492|r 23 NSISSRRQNIPPSSVISDLVVHPHEKK 49 (56) Q Consensus 23 nsissrrqnippssvisdlvvhphekk 49 (56) -.--+++.++||..|+||-+..---.+ T Consensus 23 R~~~A~~~~vp~~~V~s~~~L~~ia~~ 49 (89) T 1wud_A 23 RKSIADESNVPPYVVFNDATLIEMAEQ 49 (89) T ss_dssp HHHHHHHHTSCHHHHCCHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHH T ss_conf 999999839895556579999999997 No 3 >2faz_A Ubiquitin-like containing PHD and ring finger domains protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, metal-binding; 2.00A {Homo sapiens} SCOP: d.15.1.1 Probab=7.18 E-value=1.4e+02 Score=12.76 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=16.2 Q ss_pred HHHHHHHHHHHHHHCCCHHHH Q ss_conf 889977644654305875787 Q gi|255764492|r 17 STVDELNSISSRRQNIPPSSV 37 (56) Q Consensus 17 stvdelnsissrrqnippssv 37 (56) .||.+|...-+.+.+|||... T Consensus 25 ~tV~~lK~~i~~~~~ip~~~q 45 (78) T 2faz_A 25 TKVEELRRKIQELFHVEPGLQ 45 (78) T ss_dssp CBHHHHHHHHHHHHCCCGGGE T ss_pred CCHHHHHHHHHHHHCCCHHHE T ss_conf 969999999999979897898 No 4 >3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1 Probab=6.90 E-value=33 Score=16.05 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=27.7 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC Q ss_conf 253200035788889977644654305875787688763822 Q gi|255764492|r 5 NNLTSCTGDKIKSTVDELNSISSRRQNIPPSSVISDLVVHPH 46 (56) Q Consensus 5 nnltsctgdkikstvdelnsissrrqnippssvisdlvvhph 46 (56) |.-+-.++.--.+.-+-++.|.|-|.|-| ...|.||+-|-| T Consensus 21 NGeiIa~Se~Y~sk~~a~~gI~sVk~na~-~a~v~dl~~~~~ 61 (64) T 3bid_A 21 NHEIIAQGEGYTSKQNCQHAVDLLKSTTA-ATPVKEVLEHHH 61 (64) T ss_dssp TSCEEEECCCBSCHHHHHHHHHHHHTCCT-TSCEEECCC--- T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEHHHHCCC T ss_conf 99999977882898999999999997789-982314542012 No 5 >1pzr_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.38.2.1 Probab=6.90 E-value=1.5e+02 Score=12.68 Aligned_cols=21 Identities=43% Similarity=0.637 Sum_probs=15.6 Q ss_pred CCHHH----HHHHHHHHHHHHHHHH Q ss_conf 00357----8888997764465430 Q gi|255764492|r 10 CTGDK----IKSTVDELNSISSRRQ 30 (56) Q Consensus 10 ctgdk----ikstvdelnsissrrq 30 (56) .|.|| +|.||.||.|++.|-. T Consensus 28 mtedkLRRYLkRTv~eLdsVtaRLr 52 (60) T 1pzr_A 28 MTEEKLRRYLKRTVTELDSVTARLR 52 (60) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7799999999998888999999999 No 6 >2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A Probab=6.75 E-value=75 Score=14.21 Aligned_cols=28 Identities=14% Similarity=0.406 Sum_probs=18.5 Q ss_pred HHHHHHCCCHHHHHHHHHHCCCCCCCHH Q ss_conf 4654305875787688763822201526 Q gi|255764492|r 25 ISSRRQNIPPSSVISDLVVHPHEKKEPK 52 (56) Q Consensus 25 issrrqnippssvisdlvvhphekkepk 52 (56) --.+..|+||..|++|-+..---++.|+ T Consensus 27 ~~A~~~~~p~~~I~~d~~L~~ia~~~P~ 54 (103) T 2e1f_A 27 KHANKMDVPPAILATNKILVDMAKMRPT 54 (103) T ss_dssp HHHHHHTSCHHHHCCHHHHHHHHHHCCC T ss_pred HHHHHCCCCCEEEECHHHHHHHHHHCCC T ss_conf 9999759792044789999999987899 No 7 >3ke4_A Hypothetical cytosolic protein; helix bundle, transferase; 1.90A {Bacillus cereus} PDB: 3ke5_A* Probab=6.68 E-value=1.4e+02 Score=12.85 Aligned_cols=12 Identities=42% Similarity=0.374 Sum_probs=8.7 Q ss_pred HHHHHHHHHHHH Q ss_conf 888997764465 Q gi|255764492|r 16 KSTVDELNSISS 27 (56) Q Consensus 16 kstvdelnsiss 27 (56) -.|+|||||.-. T Consensus 50 ~GtlDELnS~IG 61 (213) T 3ke4_A 50 YGTIDEANSHIG 61 (213) T ss_dssp HHHHHHHHHHHH T ss_pred EEEHHHHHHHHH T ss_conf 341899998999 No 8 >2ah6_A BH1595, unknown conserved protein; 10174212, hypothetical protein, structural genomics, joint center for structural genomics, JCSG; 1.60A {Bacillus halodurans c-125} Probab=6.54 E-value=1.4e+02 Score=12.88 Aligned_cols=13 Identities=46% Similarity=0.496 Sum_probs=9.0 Q ss_pred HHHHHHHHHHHHH Q ss_conf 8889977644654 Q gi|255764492|r 16 KSTVDELNSISSR 28 (56) Q Consensus 16 kstvdelnsissr 28 (56) -.|+|||||.-.- T Consensus 42 ~GtlDELnS~IGl 54 (208) T 2ah6_A 42 YGTTDELNSFVGS 54 (208) T ss_dssp HHHHHHHHHHHHH T ss_pred EEEHHHHHHHHHH T ss_conf 1209999999999 No 9 >1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1 Probab=5.40 E-value=1.8e+02 Score=12.21 Aligned_cols=15 Identities=33% Similarity=0.962 Sum_probs=11.6 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 003578888997764 Q gi|255764492|r 10 CTGDKIKSTVDELNS 24 (56) Q Consensus 10 ctgdkikstvdelns 24 (56) |.||.|...+++++. T Consensus 1 ~~~DnIEqKIedId~ 15 (33) T 1r48_A 1 CGGDNIEQKIDDIDH 15 (33) T ss_dssp CCTTHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHH T ss_conf 985419998987999 No 10 >2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A {Lactobacillus reuteri} Probab=5.22 E-value=1.8e+02 Score=12.23 Aligned_cols=11 Identities=55% Similarity=0.519 Sum_probs=8.2 Q ss_pred HHHHHHHHHHH Q ss_conf 88899776446 Q gi|255764492|r 16 KSTVDELNSIS 26 (56) Q Consensus 16 kstvdelnsis 26 (56) -.++|||||.- T Consensus 66 ~GtlDELnS~I 76 (223) T 2nt8_A 66 YGEVDELNSWV 76 (223) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 56778998699 Done!