RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764493|ref|YP_003065056.2| hypothetical protein
CLIBASIA_02650 [Candidatus Liberibacter asiaticus str. psy62]
         (60 letters)



>gnl|CDD|180092 PRK05451, PRK05451, dihydroorotase; Provisional.
          Length = 345

 Score = 26.2 bits (59), Expect = 2.0
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 6/20 (30%)

Query: 28  KLKIV------KDAIDYVLD 41
           KLKIV      KDA+DYV +
Sbjct: 168 KLKIVFEHITTKDAVDYVRE 187


>gnl|CDD|162638 TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase.  This model
           represents the enzyme (UbiB) which catalyzes the first
           hydroxylation step in the ubiquinone biosynthetic
           pathway in bacteria. It is believed that the reaction is
           2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This
           model finds hits primarily in the proteobacteria. The
           gene is also known as AarF in certain species.
          Length = 437

 Score = 24.6 bits (54), Expect = 5.6
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 12/53 (22%)

Query: 13  ADIDLL--ASRWQNS----SKKLK---IVKDAIDYV---LDTQREALNAEILK 53
           ADI LL   +R        S++L+   +VK+    +   LD +REA NA  L 
Sbjct: 159 ADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLRREAANASELG 211


>gnl|CDD|179648 PRK03776, PRK03776, phosphoglycerol transferase I; Provisional.
          Length = 762

 Score = 24.3 bits (53), Expect = 6.7
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 4   SSKISFSSGADIDLLASRWQNSSKKLKIVKDAIDYVLDT 42
             K +F     ID   +R+Q +   LKIV + I Y  D+
Sbjct: 593 KGKTAFKDTV-ID--MARYQGNVDTLKIVDNDIRYKADS 628


>gnl|CDD|148597 pfam07083, DUF1351, Protein of unknown function (DUF1351).  This
           family consists of several bacterial and phage proteins
           of around 230 residues in length. The function of this
           family is unknown.
          Length = 220

 Score = 24.2 bits (53), Expect = 6.8
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 9   FSSGADIDLLASRWQNSSKKLKIVKDAIDYVLDTQREALNA 49
           F    D  +  S+W N S  LK ++++ID ++ ++ + L  
Sbjct: 131 FEEKYDDYVKKSKWLNKSVSLKKIEESIDTLILSEAQKLEE 171


>gnl|CDD|183822 PRK12900, secA, preprotein translocase subunit SecA; Reviewed.
          Length = 1025

 Score = 24.3 bits (53), Expect = 7.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 33  KDAIDYVLDTQREALNAEILK 53
           KD  D V  T+RE  NA +LK
Sbjct: 570 KDMDDLVYKTRREKYNAIVLK 590


>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase.
          Length = 357

 Score = 24.4 bits (53), Expect = 7.6
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 4/31 (12%)

Query: 12  GADIDLLASRWQNSSKKLKIVKDAIDYVLDT 42
           GAD  L++S     + +++   D++DY++DT
Sbjct: 225 GADDYLVSS----DAAEMQEAADSLDYIIDT 251


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.130    0.379 

Gapped
Lambda     K      H
   0.267   0.0736    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 911,061
Number of extensions: 39263
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 14
Length of query: 60
Length of database: 5,994,473
Length adjustment: 32
Effective length of query: 28
Effective length of database: 5,303,017
Effective search space: 148484476
Effective search space used: 148484476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.0 bits)