HHsearch alignment for GI: 255764494 and conserved domain: TIGR02350
>TIGR02350 prok_dnaK chaperone protein DnaK; InterPro: IPR012725 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes, the grpE protein is a co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold . DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for the Mycoplasma sequence) found clustered with other genes of this systems. This entry excludes DnaK homologues that are not DnaK itself, such as the heat shock cognate protein HscA (IPR010236 from INTERPRO). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of DnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; the lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=100.00 E-value=0 Score=1370.63 Aligned_cols=596 Identities=66% Similarity=1.026 Sum_probs=586.3
Q ss_pred CEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHH
Q ss_conf 16998048660699999899559975689862562799994899899667898633308351100206754986872678
Q gi|255764494|r 3 KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTV 82 (652)
Q Consensus 3 ~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 82 (652)
T Consensus 1 KiiGIDLGTTNS~vAV~eGg~p~Vi~n~EG~rTtPS~VAF~~~Ge~lVG~~AkRQAv~NP~~Ti~siKR~~G~~~~--e~ 78 (598)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRKFK--EV 78 (598)
T ss_pred CEEEEECCCCCEEEEEEECCCCEEECCCCCCCCCCCEEEECCCCCEECCHHHHHHHHHCHHHHHHHHHHHHCCCHH--HH
T ss_conf 9677304741016877866866685078879546617898489877714154134320734799999877377616--88
Q ss_pred HHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 76520198699975998279995795871999999999999999999838847336985377887402578863442112
Q gi|255764494|r 83 AKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAG 162 (652)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AG 162 (652)
T Consensus 79 ~~~~~~~py~vv~~~~~~~~~~~~~K~y~P~eISA~iL~klk~~AE~yLGe~v~~AVITVPAYFnDaQR~ATKdAG~IAG 158 (598)
T TIGR02350 79 KEEAKRVPYKVVEGDNGDVRVEVRGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAG 158 (598)
T ss_pred HHHHHHCCEEEEECCCCEEEEEECCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 98985198478854886489996186107177999999999999998628530225777115677135688986310058
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 22222221024788886034456550799872441145431010231465420133224552134476655367876420
Q gi|255764494|r 163 LDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKE 242 (652)
Q Consensus 163 l~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~ 242 (652)
T Consensus 159 L~V~RIINEPTAAALAYGldk~~~~~i~VfDLGGGTFDvSILe~gdG~feV~sT~GDt~LGGdDFD~~Iidwl~~~fk~~ 238 (598)
T TIGR02350 159 LEVLRIINEPTAAALAYGLDKKKDEKILVFDLGGGTFDVSILEIGDGVFEVKSTAGDTHLGGDDFDERIIDWLADEFKKE 238 (598)
T ss_pred CEEEEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 31377417713898860557667867999975888324688875686899985168887875205799999999998876
Q ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHH
Q ss_conf 1-343024478999999999988541155650358630443467887212687311000012342000011001111010
Q gi|255764494|r 243 N-GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQD 321 (652)
Q Consensus 243 ~-~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~ 321 (652)
T Consensus 239 ~~GiDL~~D~~ALQRL~eAAEkAKieLS~~~~T~InLPFIT~~~~GP~hL~~~LtRA~fe~l~~dLv~~~~~p~~~aL~D 318 (598)
T TIGR02350 239 EQGIDLSKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADASGPKHLELTLTRAKFEELTADLVERTKEPVRQALKD 318 (598)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 33888112478988889999886585256636664155364288887013203357789999999999989999999975
Q ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC-CCCHHEECCCCCCCCCCCCC
Q ss_conf 13563110146630785305677886541011111113565310111110002234675-22100002356653222334
Q gi|255764494|r 322 AGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGD-VKDLLLLDVTPLSLGIETLG 400 (652)
Q Consensus 322 a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~-~~~~~~~dv~p~slgie~~~ 400 (652)
T Consensus 319 A~l~~~~I~~v~LVGG~TRiP~V~~~V~~~~GK~p~~~vNPDEvVAiGAAiQgGVL~Gd~vkDvlLLDVTPLsLGiET~G 398 (598)
T TIGR02350 319 AGLSASDIDEVILVGGSTRIPAVQELVKEFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDEVKDVLLLDVTPLSLGIETLG 398 (598)
T ss_pred CCCCHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHH
T ss_conf 37884366668985588412489999998729887888880588888788875431787044489861356511013010
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHH
Q ss_conf 20246633898110245665456764122211000012222222223345310245676744353200001001100122
Q gi|255764494|r 401 GVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQ 480 (652)
Q Consensus 401 ~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGil~ 480 (652)
T Consensus 399 GV~T~lI~RNTTIP~~KsqvFSTA~DnQ~~V~I~VlQGER~~A~DNk~LG~F~L~GI~paPRG~PQIEVTFDIDANGIl~ 478 (598)
T TIGR02350 399 GVMTKLIERNTTIPTKKSQVFSTAADNQPAVEIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILH 478 (598)
T ss_pred HHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEEEEECCHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEEECCCCEEE
T ss_conf 01311102677447534520323056895679998608813344024436621068888956887557876525884488
Q ss_pred HHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 21023444200000000000112456689999999989998999999999999999999999999872202998999999
Q gi|255764494|r 481 VSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSI 560 (652)
Q Consensus 481 Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~~i 560 (652)
T Consensus 479 V~AkD~~TgK~q~I~I~~~s~Ls~~Ei~rm~~eAe~~~~~D~~~~E~~e~rN~ad~~~y~~e~~l~e~gd~~~~~~k~~~ 558 (598)
T TIGR02350 479 VSAKDKATGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEVEARNEADSLIYQAEKTLKEAGDKLPAEEKEKI 558 (598)
T ss_pred EEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 98865477850047881278988899999999999989863888888875336899999999998742101477889999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987248987899999999999999999999998
Q gi|255764494|r 561 RESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYE 601 (652)
Q Consensus 561 ~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~ 601 (652)
T Consensus 559 ~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~~~~~~~~~~~ 598 (598)
T TIGR02350 559 EKAVAELKEALKGEDVEEK-IKAKTEELQKALQKLAEALYA 598 (598)
T ss_pred HHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999850464789-999999999999999997349