HHsearch alignment for GI: 255764494 and conserved domain: TIGR02350

>TIGR02350 prok_dnaK chaperone protein DnaK; InterPro: IPR012725 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes, the grpE protein is a co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold . DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for the Mycoplasma sequence) found clustered with other genes of this systems. This entry excludes DnaK homologues that are not DnaK itself, such as the heat shock cognate protein HscA (IPR010236 from INTERPRO). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of DnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; the lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=100.00  E-value=0  Score=1370.63  Aligned_cols=596  Identities=66%  Similarity=1.026  Sum_probs=586.3

Q ss_pred             CEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHH
Q ss_conf             16998048660699999899559975689862562799994899899667898633308351100206754986872678
Q gi|255764494|r    3 KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTV   82 (652)
Q Consensus         3 ~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~   82 (652)
T Consensus         1 KiiGIDLGTTNS~vAV~eGg~p~Vi~n~EG~rTtPS~VAF~~~Ge~lVG~~AkRQAv~NP~~Ti~siKR~~G~~~~--e~   78 (598)
T TIGR02350         1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRKFK--EV   78 (598)
T ss_pred             CEEEEECCCCCEEEEEEECCCCEEECCCCCCCCCCCEEEECCCCCEECCHHHHHHHHHCHHHHHHHHHHHHCCCHH--HH
T ss_conf             9677304741016877866866685078879546617898489877714154134320734799999877377616--88


Q ss_pred             HHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf             76520198699975998279995795871999999999999999999838847336985377887402578863442112
Q gi|255764494|r   83 AKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAG  162 (652)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AG  162 (652)
T Consensus        79 ~~~~~~~py~vv~~~~~~~~~~~~~K~y~P~eISA~iL~klk~~AE~yLGe~v~~AVITVPAYFnDaQR~ATKdAG~IAG  158 (598)
T TIGR02350        79 KEEAKRVPYKVVEGDNGDVRVEVRGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAG  158 (598)
T ss_pred             HHHHHHCCEEEEECCCCEEEEEECCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf             98985198478854886489996186107177999999999999998628530225777115677135688986310058


Q ss_pred             CCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             22222221024788886034456550799872441145431010231465420133224552134476655367876420
Q gi|255764494|r  163 LDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKE  242 (652)
Q Consensus       163 l~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~  242 (652)
T Consensus       159 L~V~RIINEPTAAALAYGldk~~~~~i~VfDLGGGTFDvSILe~gdG~feV~sT~GDt~LGGdDFD~~Iidwl~~~fk~~  238 (598)
T TIGR02350       159 LEVLRIINEPTAAALAYGLDKKKDEKILVFDLGGGTFDVSILEIGDGVFEVKSTAGDTHLGGDDFDERIIDWLADEFKKE  238 (598)
T ss_pred             CEEEEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             31377417713898860557667867999975888324688875686899985168887875205799999999998876


Q ss_pred             C-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHH
Q ss_conf             1-343024478999999999988541155650358630443467887212687311000012342000011001111010
Q gi|255764494|r  243 N-GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQD  321 (652)
Q Consensus       243 ~-~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~  321 (652)
T Consensus       239 ~~GiDL~~D~~ALQRL~eAAEkAKieLS~~~~T~InLPFIT~~~~GP~hL~~~LtRA~fe~l~~dLv~~~~~p~~~aL~D  318 (598)
T TIGR02350       239 EQGIDLSKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADASGPKHLELTLTRAKFEELTADLVERTKEPVRQALKD  318 (598)
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             33888112478988889999886585256636664155364288887013203357789999999999989999999975


Q ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC-CCCHHEECCCCCCCCCCCCC
Q ss_conf             13563110146630785305677886541011111113565310111110002234675-22100002356653222334
Q gi|255764494|r  322 AGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGD-VKDLLLLDVTPLSLGIETLG  400 (652)
Q Consensus       322 a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~-~~~~~~~dv~p~slgie~~~  400 (652)
T Consensus       319 A~l~~~~I~~v~LVGG~TRiP~V~~~V~~~~GK~p~~~vNPDEvVAiGAAiQgGVL~Gd~vkDvlLLDVTPLsLGiET~G  398 (598)
T TIGR02350       319 AGLSASDIDEVILVGGSTRIPAVQELVKEFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDEVKDVLLLDVTPLSLGIETLG  398 (598)
T ss_pred             CCCCHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHH
T ss_conf             37884366668985588412489999998729887888880588888788875431787044489861356511013010


Q ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHH
Q ss_conf             20246633898110245665456764122211000012222222223345310245676744353200001001100122
Q gi|255764494|r  401 GVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQ  480 (652)
Q Consensus       401 ~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGil~  480 (652)
T Consensus       399 GV~T~lI~RNTTIP~~KsqvFSTA~DnQ~~V~I~VlQGER~~A~DNk~LG~F~L~GI~paPRG~PQIEVTFDIDANGIl~  478 (598)
T TIGR02350       399 GVMTKLIERNTTIPTKKSQVFSTAADNQPAVEIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILH  478 (598)
T ss_pred             HHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEEEEECCHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEEECCCCEEE
T ss_conf             01311102677447534520323056895679998608813344024436621068888956887557876525884488


Q ss_pred             HHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             21023444200000000000112456689999999989998999999999999999999999999872202998999999
Q gi|255764494|r  481 VSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSI  560 (652)
Q Consensus       481 Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~~i  560 (652)
T Consensus       479 V~AkD~~TgK~q~I~I~~~s~Ls~~Ei~rm~~eAe~~~~~D~~~~E~~e~rN~ad~~~y~~e~~l~e~gd~~~~~~k~~~  558 (598)
T TIGR02350       479 VSAKDKATGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEVEARNEADSLIYQAEKTLKEAGDKLPAEEKEKI  558 (598)
T ss_pred             EEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             98865477850047881278988899999999999989863888888875336899999999998742101477889999


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999987248987899999999999999999999998
Q gi|255764494|r  561 RESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYE  601 (652)
Q Consensus       561 ~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~  601 (652)
T Consensus       559 ~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~~~~~~~~~~~  598 (598)
T TIGR02350       559 EKAVAELKEALKGEDVEEK-IKAKTEELQKALQKLAEALYA  598 (598)
T ss_pred             HHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999850464789-999999999999999997349