HHsearch alignment for GI: 255764494 and conserved domain: cd00012
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.31 E-value=9.5e-11 Score=100.13 Aligned_cols=303 Identities=18% Similarity=0.202 Sum_probs=159.3
Q ss_pred EEEECCCCEEEEEEEECCEEE-EEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHH
Q ss_conf 998048660699999899559-9756898625627999948998996678986333083511002067549868726787
Q gi|255764494|r 5 IGIDLGTTNSCVAIMDGKNVR-VIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTVA 83 (652)
Q Consensus 5 iGIDlGtt~s~va~~~~~~~~-ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~ 83 (652)
T Consensus 2 vViD~GS~~~r~G~age~~P~~~ips~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~-------------- 62 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGL-----EL-------------- 62 (371)
T ss_pred EEEECCCCEEEEEECCCCCCCEEECCEEEEECCCCCCCCCCCCCEEECCHHHHCCCCCC-----EE--------------
T ss_conf 89979998599877989998789857379988766556777786587626874678772-----68--------------
Q ss_pred HHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCHHHHHHHHH-HH
Q ss_conf 652019869997599827999579587199999999999999999983884--733698537788740257886344-21
Q gi|255764494|r 84 KDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGET--VSKAVITVPAYFNDAQRQATKDAG-RI 160 (652)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~--v~~~VitVP~~f~~~qR~a~~~Aa-~~ 160 (652)
T Consensus 63 ----~~p~-----~~G--------~i~d~-d~~e~~~~~~~~---~~l~~~~~~~~vll~ep~~~~~~~r~~~~e~lFE~ 121 (371)
T cd00012 63 ----IYPI-----EHG--------IVVDW-DDMEKIWDHLFF---NELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFET 121 (371)
T ss_pred ----ECCC-----CCC--------EECCH-HHHHHHHHHHHH---HCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf ----3775-----178--------65689-999999999964---01688855584477548999899999999999976
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 12222222210247888860344565507998724411454310102314654201332245521344766553678764
Q gi|255764494|r 161 AGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK 240 (652)
Q Consensus 161 AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~ 240 (652)
T Consensus 122 ~~vp~v~~~~~~~la~y~~g~-----~tglVVDiG~~~T~v~pV--~dG~~-~~~~~~~~~~gG~~l~~~l~~~l~~~-- 191 (371)
T cd00012 122 FNVPALYVAIQAVLSLYASGR-----TTGLVVDSGDGVTHVVPV--YDGYV-LPHAIKRLDLAGRDLTRYLKELLRER-- 191 (371)
T ss_pred CCCCEEEEECHHHHHHHHCCC-----CEEEEEECCCCCEEEEEE--ECCEE-CHHHEEEEECHHHHHHHHHHHHHHHC--
T ss_conf 699879996505442565499-----628999879994688876--66698-12252998363999999999999973--
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-----------------EEEEEECCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 20134302447899999999998854115565-----------------0358630443467887212687311000012
Q gi|255764494|r 241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTS-----------------QTEINLPFISANSAGAQHLNMKLTRAQFERL 303 (652)
Q Consensus 241 ~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~-----------------~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l 303 (652)
T Consensus 192 -~~~~~~~~~~-------~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~l-------Pdg~~--i~~~~er~-~~ 253 (371)
T cd00012 192 -GYELNSSDER-------EIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYEL-------PDGRT--IKVGNERF-RA 253 (371)
T ss_pred -CCCCCCHHHH-------HHHHHHHHHCCEECCCHHHHHHHHCCCCCCCCCEEEC-------CCCCE--EEECCHHH-HC
T ss_conf -9998836779-------9999998752321587788886521377767541688-------99978--87373364-18
Q ss_pred CCCCHH---------HHHHCCCCCCHHCC--CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCC-C---------CCCCCC
Q ss_conf 342000---------01100111101013--56311014663078530567788654101111-1---------113565
Q gi|255764494|r 304 VNHLIQ---------KTVEPCKKCLQDAG--LSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKS-P---------SKGVNP 362 (652)
Q Consensus 304 ~~~l~~---------~~~~~i~~~L~~a~--~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~-~---------~~~~np 362 (652)
T Consensus 254 ~E~lF~P~~~~~~~~gl~~~i~~si~~~~~d~r~~L~~nIvl~GG~S~~~G~~~RL~~eL~~~~p~~~~~~v~~~~~~~~ 333 (371)
T cd00012 254 PEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPER 333 (371)
T ss_pred HHHHCCHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC
T ss_conf 36418943458866778999999998599999987772889955313673789999999996588767824875789988
Q ss_pred CCHHHHHHHHCCC
Q ss_conf 3101111100022
Q gi|255764494|r 363 DEVVAMGAAIQAG 375 (652)
Q Consensus 363 deaVa~GAA~~a~ 375 (652)
T Consensus 334 ~~~aW~GgSilas 346 (371)
T cd00012 334 KYSVWLGGSILAS 346 (371)
T ss_pred CEEEEHHHHHHHC
T ss_conf 8488430788777