Query gi|255764494|ref|YP_003065050.2| molecular chaperone DnaK [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 652
No_of_seqs 280 out of 4286
Neff 7.6
Searched_HMMs 39220
Date Tue May 31 16:11:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764494.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02350 prok_dnaK chaperone 100.0 0 0 1370.6 41.0 596 3-601 1-598 (598)
2 PRK00290 dnaK molecular chaper 100.0 0 0 1302.5 52.1 630 1-638 1-631 (631)
3 PRK13411 molecular chaperone D 100.0 0 0 1292.6 50.9 609 1-611 1-611 (655)
4 PTZ00186 heat shock 70 kDa pre 100.0 0 0 1293.8 48.9 608 1-610 26-634 (657)
5 CHL00094 dnaK heat shock prote 100.0 0 0 1258.8 49.6 620 1-636 1-622 (622)
6 PRK13410 molecular chaperone D 100.0 0 0 1258.8 47.6 603 1-607 1-609 (719)
7 PTZ00009 heat shock 70 kDa pro 100.0 0 0 1213.5 49.4 602 1-607 1-620 (657)
8 PRK05183 hscA chaperone protei 100.0 0 0 1218.5 45.8 591 4-608 21-613 (621)
9 KOG0100 consensus 100.0 0 0 1188.4 41.9 599 1-604 35-646 (663)
10 pfam00012 HSP70 Hsp70 protein. 100.0 0 0 1114.6 46.9 590 4-601 1-598 (598)
11 PRK01433 hscA chaperone protei 100.0 0 0 1117.4 40.6 566 3-607 20-585 (595)
12 TIGR01991 HscA Fe-S protein as 100.0 0 0 1105.2 31.6 596 1-609 22-621 (628)
13 KOG0102 consensus 100.0 0 0 1016.5 34.9 606 3-608 28-634 (640)
14 KOG0101 consensus 100.0 0 0 991.1 31.6 596 2-602 7-615 (620)
15 COG0443 DnaK Molecular chapero 100.0 0 0 959.8 35.3 573 2-601 5-578 (579)
16 KOG0103 consensus 100.0 0 0 859.2 25.3 582 1-592 1-639 (727)
17 KOG0104 consensus 100.0 0 0 724.5 33.0 597 2-612 22-748 (902)
18 PRK11678 putative chaperone; P 100.0 0 0 531.1 26.0 360 5-377 3-448 (450)
19 pfam06723 MreB_Mbl MreB/Mbl pr 100.0 0 0 506.2 20.4 314 2-376 1-321 (327)
20 PRK13930 rod shape-determining 100.0 0 0 481.8 21.6 316 1-377 8-330 (336)
21 PRK13929 rod-share determining 100.0 0 0 479.7 21.4 316 1-377 3-327 (335)
22 PRK13928 rod shape-determining 100.0 0 0 478.0 21.6 313 1-376 2-323 (325)
23 PRK13927 rod shape-determining 100.0 0 0 441.7 19.1 312 1-375 7-330 (338)
24 TIGR00904 mreB cell shape dete 100.0 9.8E-32 2.5E-36 259.1 14.5 310 2-373 2-328 (337)
25 COG1077 MreB Actin-like ATPase 100.0 3.7E-27 9.6E-32 224.4 17.9 315 2-377 6-332 (342)
26 PRK09472 ftsA cell division pr 99.8 5.7E-17 1.5E-21 147.3 15.5 321 4-375 10-387 (420)
27 COG0849 ftsA Cell division ATP 99.7 1.3E-15 3.3E-20 137.0 16.9 300 3-357 7-349 (418)
28 TIGR02529 EutJ ethanolamine ut 99.6 9.3E-16 2.4E-20 138.1 8.8 192 118-369 44-236 (240)
29 cd00012 ACTIN Actin; An ubiqui 99.3 9.5E-11 2.4E-15 100.1 13.3 303 5-375 2-346 (371)
30 smart00268 ACTIN Actin. ACTIN 99.3 1.2E-09 3.2E-14 91.7 17.6 296 3-375 2-346 (373)
31 PTZ00004 actin; Provisional 99.2 1.2E-09 3.2E-14 91.7 16.2 307 4-375 8-348 (375)
32 pfam06406 StbA StbA protein. T 99.2 3.5E-10 8.9E-15 95.8 13.0 204 132-371 93-316 (318)
33 pfam00022 Actin Actin. 99.2 1.7E-09 4.4E-14 90.6 15.9 279 4-353 5-311 (369)
34 COG4820 EutJ Ethanolamine util 99.2 4.9E-11 1.3E-15 102.3 5.9 194 119-372 77-270 (277)
35 PRK13917 plasmid segregation p 99.0 1.4E-08 3.6E-13 83.7 14.2 179 164-379 155-339 (346)
36 PTZ00280 actin; Provisional 99.0 5.7E-08 1.4E-12 79.1 16.1 298 1-353 1-337 (416)
37 PTZ00281 actin; Provisional 98.9 5.3E-08 1.4E-12 79.3 13.3 306 4-375 8-349 (376)
38 KOG0679 consensus 98.8 7.2E-07 1.8E-11 70.7 16.1 179 4-238 13-202 (426)
39 TIGR01174 ftsA cell division p 98.6 2.4E-06 6.2E-11 66.7 12.6 179 152-358 169-363 (393)
40 PRK10331 L-fuculokinase; Provi 98.5 8.3E-06 2.1E-10 62.7 12.9 55 328-383 389-443 (470)
41 PRK10939 autoinducer-2 (AI-2) 98.5 3.2E-05 8.3E-10 58.2 15.9 58 322-383 407-464 (521)
42 PTZ00294 glycerol kinase; Prov 98.4 3E-06 7.7E-11 66.0 10.2 65 315-383 403-467 (510)
43 COG5277 Actin and related prot 98.4 1.2E-05 3E-10 61.5 12.9 192 5-238 9-204 (444)
44 PRK04123 ribulokinase; Provisi 98.3 3.6E-05 9.3E-10 57.8 13.7 64 316-383 429-493 (542)
45 pfam02491 FtsA Cell division p 98.3 1.8E-06 4.7E-11 67.6 6.1 140 189-356 1-157 (163)
46 COG4972 PilM Tfp pilus assembl 98.2 0.00025 6.4E-09 51.5 16.1 204 124-377 108-335 (354)
47 COG1924 Activator of 2-hydroxy 98.2 0.00011 2.7E-09 54.3 13.4 177 163-375 207-389 (396)
48 pfam07520 SrfB Virulence facto 98.0 0.00029 7.4E-09 51.0 12.9 317 49-375 332-834 (999)
49 KOG0676 consensus 98.0 0.00043 1.1E-08 49.7 13.7 280 2-353 7-315 (372)
50 COG1070 XylB Sugar (pentulose 98.0 0.00046 1.2E-08 49.5 13.6 51 328-379 401-451 (502)
51 TIGR01312 XylB xylulokinase; I 97.8 1.1E-05 2.8E-10 61.8 2.2 115 255-379 321-449 (494)
52 PRK13317 pantothenate kinase; 97.7 0.00052 1.3E-08 49.1 9.6 51 325-375 218-272 (273)
53 TIGR03192 benz_CoA_bzdQ benzoy 97.6 0.00064 1.6E-08 48.4 9.0 173 168-376 107-288 (293)
54 COG1069 AraB Ribulose kinase [ 97.5 0.008 2E-07 40.1 13.5 215 189-422 270-512 (544)
55 KOG0797 consensus 97.5 0.0019 4.9E-08 44.8 9.9 156 107-276 194-356 (618)
56 pfam06277 EutA Ethanolamine ut 97.4 0.0034 8.6E-08 42.9 10.7 41 182-227 138-178 (473)
57 PRK10719 eutA reactivating fac 97.4 0.0066 1.7E-07 40.7 11.9 40 182-226 141-180 (471)
58 pfam08841 DDR Diol dehydratase 97.1 0.00046 1.2E-08 49.5 3.8 185 162-372 109-327 (332)
59 pfam02782 FGGY_C FGGY family o 97.1 0.00042 1.1E-08 49.8 3.3 55 318-376 137-191 (193)
60 pfam01968 Hydantoinase_A Hydan 97.1 0.0015 3.9E-08 45.5 5.9 62 308-372 216-278 (285)
61 pfam01869 BcrAD_BadFG BadF/Bad 97.0 0.02 5E-07 37.1 11.2 70 298-374 214-288 (288)
62 TIGR03286 methan_mark_15 putat 96.7 0.0036 9.3E-08 42.7 5.0 46 330-375 357-402 (404)
63 KOG2517 consensus 96.6 0.02 5.2E-07 37.0 8.6 70 309-382 398-467 (516)
64 COG4819 EutA Ethanolamine util 96.3 0.086 2.2E-06 32.3 10.2 73 161-240 121-197 (473)
65 PRK00047 glpK glycerol kinase; 96.2 0.0016 4.2E-08 45.3 0.9 61 320-384 398-458 (498)
66 smart00842 FtsA Cell division 96.2 0.061 1.6E-06 33.4 8.9 155 4-178 1-186 (187)
67 PRK00292 glk glucokinase; Prov 95.8 0.15 3.9E-06 30.4 9.6 193 159-374 87-312 (315)
68 PRK10854 exopolyphosphatase; P 95.2 0.21 5.4E-06 29.3 8.5 54 151-205 99-155 (513)
69 PRK10640 rhaB rhamnulokinase; 95.0 0.008 2E-07 40.1 0.7 56 327-384 374-429 (471)
70 KOG2531 consensus 94.9 0.018 4.5E-07 37.5 2.5 54 322-376 436-489 (545)
71 PRK11031 guanosine pentaphosph 94.9 0.23 5.9E-06 29.0 8.2 51 154-205 97-150 (494)
72 COG4457 SrfB Uncharacterized p 94.8 0.35 8.9E-06 27.7 12.9 52 326-377 776-847 (1014)
73 KOG0680 consensus 94.5 0.42 1.1E-05 27.1 11.3 205 136-352 94-341 (400)
74 COG0248 GppA Exopolyphosphatas 94.3 0.37 9.4E-06 27.5 8.0 82 119-205 57-147 (492)
75 pfam02541 Ppx-GppA Ppx/GppA ph 94.3 0.4 1E-05 27.2 8.1 105 117-230 41-150 (285)
76 COG5026 Hexokinase [Carbohydra 93.8 0.31 8E-06 28.0 6.8 30 184-213 72-102 (466)
77 KOG0681 consensus 93.4 0.3 7.7E-06 28.1 6.1 53 186-245 167-219 (645)
78 COG0145 HyuA N-methylhydantoin 93.0 0.11 2.9E-06 31.4 3.4 41 164-205 254-296 (674)
79 TIGR01315 5C_CHO_kinase FGGY-f 92.6 0.079 2E-06 32.6 2.2 62 315-378 457-518 (574)
80 TIGR00395 leuS_arch leucyl-tRN 92.3 0.078 2E-06 32.6 1.8 88 9-99 305-402 (1109)
81 pfam03702 UPF0075 Uncharacteri 92.1 0.35 8.9E-06 27.7 5.0 61 312-375 270-335 (363)
82 PRK09585 anmK anhydro-N-acetyl 92.0 0.25 6.3E-06 28.8 4.1 49 327-375 285-338 (366)
83 pfam02685 Glucokinase Glucokin 91.6 1 2.7E-05 24.0 7.1 195 159-375 88-314 (316)
84 PRK00047 glpK glycerol kinase; 89.8 0.36 9.1E-06 27.6 3.3 20 4-23 7-26 (498)
85 pfam00370 FGGY_N FGGY family o 89.6 0.26 6.7E-06 28.6 2.5 20 4-23 2-21 (245)
86 TIGR02627 rhamnulo_kin rhamnul 88.1 0.3 7.7E-06 28.1 1.9 309 23-372 77-435 (460)
87 KOG1385 consensus 87.4 2.1 5.3E-05 21.8 8.3 30 181-210 207-236 (453)
88 PRK00109 Holliday junction res 86.0 0.98 2.5E-05 24.3 3.6 23 1-23 3-25 (141)
89 TIGR02628 fuculo_kin_coli L-fu 85.8 0.54 1.4E-05 26.2 2.2 143 228-382 306-454 (473)
90 COG2377 Predicted molecular ch 84.1 3 7.6E-05 20.6 5.8 180 174-375 150-342 (371)
91 KOG0681 consensus 83.8 0.58 1.5E-05 26.0 1.6 23 4-26 25-47 (645)
92 PRK00877 hisD histidinol dehyd 81.7 3.3 8.3E-05 20.3 4.8 49 134-182 151-200 (428)
93 COG1548 Predicted transcriptio 81.3 3.7 9.4E-05 19.9 9.3 69 121-202 77-145 (330)
94 COG0554 GlpK Glycerol kinase [ 81.3 0.8 2E-05 25.0 1.5 66 310-379 387-452 (499)
95 pfam00349 Hexokinase_1 Hexokin 80.6 1.6 4E-05 22.7 2.8 31 184-214 59-90 (205)
96 TIGR01311 glycerol_kin glycero 80.6 0.78 2E-05 25.0 1.3 189 159-379 246-472 (518)
97 PRK12447 histidinol dehydrogen 80.4 2.2 5.7E-05 21.5 3.6 48 134-182 145-193 (424)
98 pfam00815 Histidinol_dh Histid 80.2 2.5 6.3E-05 21.2 3.7 49 134-182 137-186 (413)
99 pfam03652 UPF0081 Uncharacteri 80.1 2.2 5.6E-05 21.6 3.4 20 3-22 2-21 (134)
100 PRK05082 N-acetylmannosamine k 79.6 1.9 4.9E-05 22.1 3.0 21 1-22 1-21 (291)
101 TIGR02668 moaA_archaeal probab 79.6 3.9 9.9E-05 19.7 4.6 116 209-351 62-185 (324)
102 KOG0677 consensus 79.1 3.5 9E-05 20.0 4.2 194 136-352 102-318 (389)
103 KOG0797 consensus 79.0 0.45 1.2E-05 26.8 -0.3 16 187-202 178-193 (618)
104 COG0141 HisD Histidinol dehydr 78.7 2 5.2E-05 21.9 2.9 48 134-182 146-194 (425)
105 COG5185 HEC1 Protein involved 78.5 4.5 0.00011 19.3 11.9 17 225-241 227-243 (622)
106 PRK13770 histidinol dehydrogen 78.2 3 7.6E-05 20.6 3.6 48 134-182 140-188 (416)
107 cd06572 Histidinol_dh Histidin 77.8 4.7 0.00012 19.1 4.9 49 134-182 122-171 (390)
108 KOG1369 consensus 77.6 4.8 0.00012 19.1 5.4 27 184-210 83-109 (474)
109 TIGR00381 cdhD CO dehydrogenas 77.6 1.7 4.3E-05 22.4 2.2 138 190-375 93-245 (401)
110 smart00732 YqgFc Likely ribonu 75.9 3 7.5E-05 20.6 3.1 21 3-23 2-22 (99)
111 COG0403 GcvP Glycine cleavage 74.4 4.4 0.00011 19.4 3.6 73 119-191 62-169 (450)
112 PRK09116 3-oxoacyl-(acyl carri 74.0 3.4 8.7E-05 20.2 3.0 52 304-355 201-254 (336)
113 cd00327 cond_enzymes Condensin 73.5 1.4 3.6E-05 23.0 1.0 50 304-353 140-191 (254)
114 TIGR00069 hisD histidinol dehy 73.4 2.6 6.6E-05 21.1 2.3 48 135-182 148-196 (435)
115 TIGR00114 lumazine-synth 6,7-d 72.2 2.4 6.1E-05 21.3 1.9 97 295-398 5-111 (148)
116 TIGR02927 SucB_Actino 2-oxoglu 72.1 6.1 0.00015 18.3 3.9 67 378-457 451-522 (607)
117 PRK05952 3-oxoacyl-(acyl carri 72.0 3.8 9.6E-05 19.8 2.8 56 308-363 251-309 (379)
118 cd00825 decarbox_cond_enzymes 71.9 3.8 9.7E-05 19.8 2.9 52 303-354 199-252 (332)
119 PRK13329 pantothenate kinase; 71.9 6.2 0.00016 18.2 3.9 23 1-24 1-23 (246)
120 PRK09698 D-allose kinase; Prov 70.0 4.2 0.00011 19.5 2.7 20 4-23 6-25 (302)
121 PRK06501 3-oxoacyl-(acyl carri 69.6 3.9 0.0001 19.7 2.5 50 305-354 285-336 (425)
122 cd00529 RuvC_resolvase Hollida 69.3 3.5 8.9E-05 20.1 2.2 19 3-21 1-19 (154)
123 COG4499 Predicted membrane pro 69.1 7.4 0.00019 17.6 4.4 15 340-354 211-225 (434)
124 COG0816 Predicted endonuclease 68.6 5.5 0.00014 18.6 3.1 22 2-23 2-23 (141)
125 PRK00865 glutamate racemase; P 68.1 3.2 8.3E-05 20.3 1.8 41 328-371 174-214 (262)
126 PRK00061 ribH riboflavin synth 68.0 2.7 6.8E-05 21.0 1.4 78 286-375 8-85 (154)
127 PRK07910 3-oxoacyl-(acyl carri 67.9 3.7 9.5E-05 19.9 2.1 50 305-354 282-333 (418)
128 PRK07103 polyketide beta-ketoa 67.8 4.6 0.00012 19.2 2.5 66 305-370 281-349 (415)
129 PRK07515 3-oxoacyl-(acyl carri 67.1 4.7 0.00012 19.1 2.5 44 308-353 270-313 (372)
130 PRK13359 beta-ketoadipyl CoA t 67.0 8.1 0.00021 17.3 10.3 65 108-172 22-93 (400)
131 COG4012 Uncharacterized protei 67.0 8.1 0.00021 17.3 5.6 57 141-204 185-244 (342)
132 PRK11267 biopolymer transport 66.9 8.1 0.00021 17.3 5.1 66 104-176 75-140 (141)
133 PRK13326 pantothenate kinase; 66.8 8.1 0.00021 17.3 3.6 25 1-25 5-29 (262)
134 COG0074 SucD Succinyl-CoA synt 66.6 8.2 0.00021 17.3 6.0 48 119-173 53-100 (293)
135 TIGR01382 PfpI intracellular p 65.6 3.1 8E-05 20.4 1.3 53 323-380 71-131 (189)
136 COG2069 CdhD CO dehydrogenase/ 65.4 8.6 0.00022 17.1 3.7 58 310-374 186-251 (403)
137 COG0054 RibH Riboflavin syntha 65.3 3.7 9.4E-05 19.9 1.7 77 288-376 10-86 (152)
138 TIGR00658 orni_carb_tr ornithi 65.3 8.7 0.00022 17.1 3.6 46 66-120 90-143 (341)
139 pfam02801 Ketoacyl-synt_C Beta 65.1 3.6 9.1E-05 20.0 1.6 52 304-355 20-73 (117)
140 smart00825 PKS_KS Beta-ketoacy 64.6 4.8 0.00012 19.0 2.1 51 304-354 274-326 (424)
141 PRK08142 acetyl-CoA acetyltran 64.5 4 0.0001 19.7 1.7 17 231-247 145-161 (388)
142 pfam08735 DUF1786 Putative pyr 64.5 8.9 0.00023 17.0 8.0 96 101-205 81-183 (252)
143 cd00833 PKS polyketide synthas 64.3 5.7 0.00015 18.5 2.5 52 303-354 273-326 (421)
144 PRK09185 3-oxoacyl-(acyl carri 64.2 6.3 0.00016 18.2 2.7 58 306-363 259-319 (395)
145 COG1521 Pantothenate kinase ty 63.6 8.9 0.00023 17.0 3.4 21 4-24 2-22 (251)
146 PRK13334 consensus 63.5 8.4 0.00022 17.2 3.2 21 3-23 5-25 (262)
147 TIGR00459 aspS_bact aspartyl-t 63.1 4.8 0.00012 19.0 1.9 48 329-376 540-594 (653)
148 TIGR00329 gcp metalloendopepti 63.0 3.4 8.7E-05 20.2 1.1 48 307-354 265-312 (337)
149 COG0332 FabH 3-oxoacyl-[acyl-c 62.9 6.5 0.00017 18.0 2.6 53 295-354 213-265 (323)
150 PRK04457 spermidine synthase; 62.6 4.3 0.00011 19.4 1.6 151 167-355 48-198 (262)
151 PTZ00050 3-oxoacyl-acyl carrie 62.1 6.9 0.00018 17.8 2.6 50 305-354 335-386 (477)
152 PRK00976 hypothetical protein; 62.0 3.6 9.2E-05 20.0 1.1 56 329-386 262-319 (324)
153 PRK12566 glycine dehydrogenase 61.9 9.9 0.00025 16.7 4.2 61 118-178 65-156 (954)
154 PRK13327 pantothenate kinase; 61.9 6.5 0.00017 18.1 2.4 23 1-24 1-23 (242)
155 pfam02075 RuvC Crossover junct 61.1 6.5 0.00016 18.1 2.3 18 4-21 1-18 (148)
156 PRK00039 ruvC Holliday junctio 60.9 7.2 0.00018 17.7 2.5 21 1-21 1-21 (169)
157 PRK06158 thiolase; Provisional 60.9 4 0.0001 19.7 1.1 51 110-166 26-76 (384)
158 PRK13324 pantothenate kinase; 60.5 10 0.00027 16.5 3.4 21 4-24 2-22 (258)
159 PRK12419 riboflavin synthase s 59.7 3.8 9.6E-05 19.8 0.9 72 292-375 12-83 (158)
160 cd00832 CLF Chain-length facto 59.4 8.9 0.00023 17.0 2.7 46 309-354 270-317 (399)
161 TIGR00241 CoA_E_activ CoA-subs 59.2 6.2 0.00016 18.2 1.9 43 330-372 215-258 (259)
162 PRK12879 3-oxoacyl-(acyl carri 59.0 4.7 0.00012 19.1 1.3 45 308-355 225-269 (326)
163 PRK09352 3-oxoacyl-(acyl carri 59.0 4.8 0.00012 19.1 1.3 44 309-355 220-263 (319)
164 TIGR02324 CP_lyasePhnL phospho 58.7 5.7 0.00015 18.4 1.7 65 110-176 105-180 (224)
165 PRK06567 putative bifunctional 57.9 7.8 0.0002 17.4 2.2 18 185-202 400-417 (1048)
166 PRK13225 phosphoglycolate phos 57.8 2.5 6.5E-05 21.1 -0.3 25 313-340 199-223 (273)
167 TIGR03545 conserved hypothetic 57.7 12 0.00029 16.2 9.5 11 345-355 279-289 (554)
168 pfam00814 Peptidase_M22 Glycop 57.4 6.3 0.00016 18.1 1.7 24 329-352 182-205 (225)
169 PRK13323 consensus 57.2 12 0.0003 16.1 3.4 21 4-24 2-22 (258)
170 PRK09604 putative DNA-binding/ 56.9 12 0.0003 16.1 11.5 138 188-353 128-283 (335)
171 TIGR03281 methan_mark_12 putat 56.9 5.3 0.00014 18.7 1.2 55 329-385 263-320 (326)
172 PRK13332 consensus 56.9 12 0.0003 16.1 3.5 21 4-24 2-22 (251)
173 pfam01150 GDA1_CD39 GDA1/CD39 56.8 8.2 0.00021 17.3 2.2 18 186-203 159-176 (424)
174 PRK13330 consensus 56.5 12 0.00031 16.0 3.3 21 4-24 2-22 (257)
175 PRK05963 3-oxoacyl-(acyl carri 56.0 5.2 0.00013 18.8 1.1 51 305-358 224-274 (327)
176 PRK06445 acetyl-CoA acetyltran 55.9 12 0.00031 15.9 10.1 52 108-164 28-83 (394)
177 pfam09726 Macoilin Transmembra 55.5 12 0.00032 15.9 7.3 12 529-540 490-501 (680)
178 TIGR01314 gntK_FGGY gluconate 54.9 11 0.00029 16.2 2.6 56 329-385 403-458 (506)
179 pfam03309 Bvg_acc_factor Borde 54.3 13 0.00033 15.8 3.2 21 4-24 1-21 (206)
180 pfam02347 GDC-P Glycine cleava 54.2 13 0.00033 15.8 4.5 73 119-191 52-159 (429)
181 PRK06840 hypothetical protein; 54.0 6.1 0.00016 18.2 1.2 51 308-361 236-286 (337)
182 PRK05367 glycine dehydrogenase 53.9 13 0.00034 15.7 5.3 59 119-177 67-156 (955)
183 cd00828 elong_cond_enzymes "el 53.6 13 0.00034 15.7 2.9 46 309-354 274-321 (407)
184 PRK06333 3-oxoacyl-(acyl carri 53.6 10 0.00025 16.6 2.2 47 308-354 287-335 (424)
185 TIGR01166 cbiO cobalt ABC tran 53.1 14 0.00034 15.6 3.0 111 45-175 46-157 (190)
186 PRK13311 N-acetyl-D-glucosamin 53.1 13 0.00034 15.7 2.8 20 4-23 2-21 (256)
187 PRK13321 pantothenate kinase; 52.8 14 0.00035 15.6 3.2 21 4-24 2-22 (256)
188 PRK07204 3-oxoacyl-(acyl carri 52.3 11 0.00027 16.4 2.2 45 309-356 230-274 (329)
189 TIGR00461 gcvP glycine dehydro 52.2 5 0.00013 18.9 0.5 46 140-185 91-156 (965)
190 PRK08313 acetyl-CoA acetyltran 52.2 6.8 0.00017 17.9 1.2 39 110-149 23-62 (391)
191 cd00834 KAS_I_II Beta-ketoacyl 52.0 9.7 0.00025 16.7 1.9 46 309-354 275-322 (406)
192 PRK13310 N-acetyl-D-glucosamin 51.6 14 0.00036 15.5 2.8 46 329-374 246-300 (302)
193 TIGR00744 ROK_glcA_fam ROK fam 50.9 12 0.00032 15.9 2.3 47 305-354 236-285 (326)
194 PRK06816 3-oxoacyl-(acyl carri 50.9 6.5 0.00017 18.0 0.9 41 309-349 272-313 (378)
195 KOG2411 consensus 50.9 6 0.00015 18.3 0.7 26 329-354 519-546 (628)
196 cd00830 KAS_III Ketoacyl-acyl 50.6 9.3 0.00024 16.9 1.7 46 309-357 223-268 (320)
197 PRK13318 pantothenate kinase; 50.4 15 0.00038 15.3 3.5 21 4-24 2-22 (258)
198 KOG2525 consensus 50.3 15 0.00038 15.3 9.6 130 102-269 115-253 (496)
199 TIGR01642 U2AF_lg U2 snRNP aux 50.2 15 0.00038 15.3 4.6 17 333-352 338-360 (577)
200 TIGR02074 PBP_1a_fam penicilli 49.7 11 0.00029 16.2 2.0 43 107-163 93-144 (700)
201 TIGR01129 secD protein-export 49.6 15 0.00039 15.2 2.8 10 136-145 132-141 (522)
202 PRK07314 3-oxoacyl-(acyl carri 49.3 13 0.00033 15.8 2.2 46 309-354 276-323 (411)
203 PRK06364 consensus 49.2 7.8 0.0002 17.4 1.1 16 231-246 151-166 (389)
204 PRK12880 3-oxoacyl-(acyl carri 49.1 7.1 0.00018 17.8 0.9 46 307-355 240-285 (353)
205 COG4598 HisP ABC-type histidin 49.0 11 0.00028 16.3 1.8 101 113-214 119-233 (256)
206 cd03141 GATase1_Hsp31_like Typ 48.9 8.5 0.00022 17.1 1.3 60 311-375 73-138 (221)
207 PRK08234 consensus 48.8 16 0.0004 15.2 10.4 65 108-172 22-93 (400)
208 TIGR00956 3a01205 Pleiotropic 48.8 10 0.00026 16.5 1.7 16 361-376 500-515 (1466)
209 PTZ00187 succinyl-CoA syntheta 48.6 16 0.0004 15.1 2.9 49 120-175 69-117 (309)
210 PRK09258 3-oxoacyl-(acyl carri 48.6 7 0.00018 17.8 0.8 44 309-355 240-283 (339)
211 COG0304 FabB 3-oxoacyl-(acyl-c 48.5 12 0.00031 16.0 2.0 49 307-355 274-324 (412)
212 PRK09557 fructokinase; Reviewe 48.3 16 0.0004 15.1 3.6 20 5-24 3-22 (301)
213 pfam00885 DMRL_synthase 6,7-di 48.2 5.5 0.00014 18.6 0.2 73 292-376 5-77 (144)
214 cd00831 CHS_like Chalcone and 47.9 7.5 0.00019 17.6 0.8 48 308-355 86-134 (361)
215 TIGR03031 cas_csx12 CRISPR-ass 47.7 16 0.00041 15.0 2.9 55 5-64 2-61 (802)
216 COG0533 QRI7 Metal-dependent p 47.6 7.7 0.0002 17.5 0.9 40 309-353 247-286 (342)
217 PRK13319 consensus 47.5 16 0.00042 15.0 3.4 21 4-24 2-22 (258)
218 TIGR02666 moaA molybdenum cofa 47.4 16 0.00042 15.0 5.0 104 208-337 61-171 (346)
219 TIGR02982 heterocyst_DevA ABC 47.2 12 0.0003 16.1 1.8 130 19-176 28-172 (220)
220 pfam08904 DUF1849 Domain of un 47.1 13 0.00032 15.8 1.9 20 461-480 209-228 (252)
221 PRK13642 cbiO cobalt transport 46.9 8 0.0002 17.4 0.8 36 141-176 136-171 (277)
222 cd01400 6PGL 6PGL: 6-Phosphogl 46.0 10 0.00027 16.5 1.3 17 332-348 27-43 (219)
223 TIGR03150 fabF 3-oxoacyl-[acyl 45.9 15 0.00037 15.4 2.1 45 310-354 276-322 (407)
224 cd00827 init_cond_enzymes "ini 45.8 8.9 0.00023 17.0 0.9 50 306-355 47-98 (324)
225 PRK13650 cbiO cobalt transport 45.4 8.6 0.00022 17.1 0.8 36 141-176 133-168 (276)
226 PRK07710 acetolactate synthase 45.3 18 0.00045 14.8 7.1 61 137-201 32-93 (571)
227 PRK03011 butyrate kinase; Prov 45.1 12 0.00031 16.0 1.6 44 328-371 296-343 (356)
228 PRK06059 lipid-transfer protei 44.8 13 0.00032 15.8 1.6 15 232-246 147-161 (399)
229 TIGR01935 NOT-MenG RraA family 44.5 11 0.00028 16.3 1.3 19 331-349 60-80 (155)
230 PRK08722 3-oxoacyl-(acyl carri 44.2 13 0.00034 15.7 1.6 44 311-354 280-325 (414)
231 PRK13640 cbiO cobalt transport 44.2 9.4 0.00024 16.8 0.9 38 139-176 138-175 (283)
232 PRK06289 acetyl-CoA acetyltran 43.4 7.2 0.00018 17.7 0.2 16 231-246 152-167 (408)
233 cd06409 PB1_MUG70 The MUG70 pr 43.1 19 0.00048 14.5 3.5 78 89-172 1-86 (86)
234 PRK09605 O-sialoglycoprotein e 42.8 7.9 0.0002 17.4 0.3 132 189-354 127-272 (536)
235 PRK13633 cobalt transporter AT 42.8 11 0.00029 16.2 1.1 35 142-176 142-176 (281)
236 PRK01005 V-type ATP synthase s 42.7 19 0.00049 14.5 10.6 11 508-518 41-51 (208)
237 PRK13639 cbiO cobalt transport 42.7 10 0.00026 16.6 0.8 35 142-176 134-168 (275)
238 pfam08541 ACP_syn_III_C 3-Oxoa 42.5 13 0.00034 15.7 1.4 35 319-356 1-35 (90)
239 TIGR01795 CM_mono_cladeE chori 42.1 19 0.0005 14.4 3.2 41 225-265 13-65 (94)
240 PTZ00340 O-sialoglycoprotein e 41.7 20 0.0005 14.4 8.0 38 312-354 256-293 (348)
241 PRK08768 consensus 41.7 19 0.0005 14.4 2.2 46 309-354 277-324 (411)
242 PRK06064 acetyl-CoA acetyltran 41.4 11 0.00028 16.3 0.9 55 109-165 19-75 (389)
243 pfam05262 Borrelia_P83 Borreli 41.3 20 0.00051 14.4 8.7 66 331-396 68-143 (489)
244 cd03226 ABC_cobalt_CbiO_domain 41.3 11 0.00028 16.3 0.8 36 141-176 122-157 (205)
245 KOG2314 consensus 41.3 20 0.00051 14.3 3.8 26 550-575 596-621 (698)
246 COG5016 Pyruvate/oxaloacetate 41.1 6.5 0.00016 18.1 -0.4 76 187-267 41-137 (472)
247 PRK13631 cbiO cobalt transport 41.0 12 0.00032 15.9 1.1 36 141-176 172-207 (320)
248 PRK08131 acetyl-CoA acetyltran 41.0 20 0.00051 14.3 10.8 64 108-172 22-92 (401)
249 TIGR02845 spore_V_AD stage V s 40.9 11 0.00027 16.4 0.7 44 312-356 207-252 (331)
250 PRK10908 cell division protein 40.9 13 0.00034 15.6 1.2 37 140-176 132-168 (222)
251 PRK13651 cobalt transporter AT 40.7 13 0.00033 15.8 1.1 36 141-176 157-192 (304)
252 PRK10771 thiQ thiamine transpo 40.7 11 0.00027 16.4 0.7 36 141-176 125-160 (233)
253 cd03234 ABCG_White The White s 40.6 13 0.00032 15.9 1.0 35 142-176 140-174 (226)
254 PRK13635 cbiO cobalt transport 40.4 11 0.00029 16.2 0.8 36 141-176 136-171 (279)
255 PRK06157 acetyl-CoA acetyltran 40.4 8.4 0.00021 17.2 0.1 40 234-276 150-189 (400)
256 PRK13769 histidinol dehydrogen 40.1 21 0.00053 14.2 3.1 45 134-181 120-165 (368)
257 TIGR01499 folC FolC bifunction 40.0 21 0.00053 14.2 5.8 136 101-269 64-207 (460)
258 PRK05678 succinyl-CoA syntheta 40.0 20 0.0005 14.4 2.0 50 119-175 53-102 (289)
259 PRK11629 lolD lipoprotein tran 39.9 11 0.00028 16.3 0.7 36 141-176 141-176 (233)
260 COG0072 PheT Phenylalanyl-tRNA 39.8 21 0.00054 14.2 4.2 17 499-515 622-638 (650)
261 TIGR01175 pilM type IV pilus a 39.7 21 0.00054 14.2 5.2 190 154-377 150-363 (381)
262 COG1129 MglA ABC-type sugar tr 39.6 21 0.00052 14.3 2.0 54 121-176 120-176 (500)
263 cd03215 ABC_Carb_Monos_II This 39.4 13 0.00032 15.9 0.9 36 141-176 100-135 (182)
264 COG4172 ABC-type uncharacteriz 38.9 19 0.00049 14.5 1.8 37 140-176 152-188 (534)
265 PRK10846 bifunctional folylpol 38.8 22 0.00055 14.1 2.4 53 172-229 127-183 (416)
266 pfam00480 ROK ROK family. 38.8 22 0.00055 14.1 8.1 35 162-197 94-130 (181)
267 PRK13643 cbiO cobalt transport 38.7 14 0.00037 15.4 1.1 36 141-176 140-175 (288)
268 PRK13636 cbiO cobalt transport 38.6 14 0.00035 15.6 1.0 36 141-176 137-172 (285)
269 cd03235 ABC_Metallic_Cations A 38.6 12 0.0003 16.1 0.6 35 142-176 129-163 (213)
270 TIGR00747 fabH 3-oxoacyl-(acyl 38.1 22 0.00057 14.0 2.9 83 302-388 222-314 (329)
271 PRK13646 cbiO cobalt transport 38.1 15 0.00039 15.3 1.1 36 141-176 141-176 (286)
272 KOG1939 consensus 38.0 9.4 0.00024 16.8 0.1 20 185-204 303-322 (1247)
273 PRK06365 acetyl-CoA acetyltran 37.9 16 0.0004 15.1 1.2 39 231-276 146-184 (415)
274 PRK07855 lipid-transfer protei 37.9 19 0.00047 14.6 1.6 15 233-247 151-165 (386)
275 cd03255 ABC_MJ0796_Lo1CDE_FtsE 37.8 15 0.00038 15.3 1.1 36 141-176 136-171 (218)
276 COG5418 Predicted secreted pro 37.8 17 0.00044 14.8 1.4 72 260-336 30-104 (164)
277 PRK10584 putative ABC transpor 37.4 16 0.00042 15.0 1.2 37 140-176 141-177 (228)
278 PRK08256 lipid-transfer protei 37.3 9.2 0.00023 16.9 -0.1 58 108-167 18-75 (391)
279 PRK11124 artP arginine transpo 37.3 15 0.00037 15.4 1.0 37 140-176 136-172 (242)
280 PRK13637 cbiO cobalt transport 37.2 14 0.00037 15.4 0.9 36 141-176 140-175 (287)
281 PRK07516 acetyl-CoA acetyltran 37.2 9.6 0.00025 16.7 0.0 32 110-142 20-51 (389)
282 cd06151 YjgF_YER057c_UK114_lik 37.0 21 0.00055 14.1 1.8 46 310-355 45-97 (126)
283 cd03261 ABC_Org_Solvent_Resist 36.8 16 0.0004 15.2 1.0 37 140-176 131-167 (235)
284 TIGR02142 modC_ABC molybdate A 36.7 12 0.0003 16.1 0.4 85 70-176 74-162 (361)
285 cd03225 ABC_cobalt_CbiO_domain 36.6 14 0.00035 15.6 0.7 36 141-176 130-165 (211)
286 pfam02970 TBCA Tubulin binding 36.5 23 0.0006 13.8 8.1 68 507-575 9-79 (90)
287 PRK13649 cbiO cobalt transport 36.3 16 0.0004 15.1 1.0 35 142-176 142-176 (280)
288 PRK00409 recombination and DNA 36.2 24 0.0006 13.8 12.7 18 107-124 82-101 (780)
289 COG2192 Predicted carbamoyl tr 36.1 24 0.0006 13.8 11.4 48 329-376 286-335 (555)
290 TIGR01282 nifD nitrogenase mol 36.1 4 0.0001 19.6 -2.1 129 217-351 216-361 (521)
291 COG3426 Butyrate kinase [Energ 36.1 22 0.00057 14.0 1.7 201 140-371 121-343 (358)
292 cd06427 CESA_like_2 CESA_like_ 36.0 24 0.00061 13.8 3.7 21 173-193 72-92 (241)
293 pfam01385 Transposase_2 Probab 35.9 24 0.00061 13.8 2.9 11 188-198 124-134 (226)
294 cd03293 ABC_NrtD_SsuB_transpor 35.9 15 0.00038 15.3 0.8 40 137-176 123-162 (220)
295 PRK13644 cbiO cobalt transport 35.8 16 0.00041 15.1 1.0 39 138-176 129-167 (274)
296 PRK09052 acetyl-CoA acetyltran 35.8 24 0.00061 13.7 10.7 72 108-179 27-106 (399)
297 PRK13331 pantothenate kinase; 35.5 24 0.00062 13.7 3.4 21 4-24 9-29 (251)
298 pfam06008 Laminin_I Laminin Do 35.5 24 0.00062 13.7 11.5 74 501-574 118-203 (263)
299 PRK00560 molybdopterin-guanine 35.2 18 0.00046 14.7 1.1 12 327-338 7-18 (196)
300 PRK13361 molybdenum cofactor b 35.1 25 0.00063 13.7 5.4 104 209-338 61-168 (329)
301 PRK09533 bifunctional transald 34.7 19 0.00049 14.4 1.3 45 324-371 450-503 (950)
302 TIGR01198 pgl 6-phosphoglucono 34.7 19 0.00048 14.5 1.2 44 302-350 7-50 (251)
303 pfam09861 DUF2088 Uncharacteri 34.7 12 0.00031 16.0 0.2 61 309-371 71-139 (203)
304 PRK13645 cbiO cobalt transport 34.5 17 0.00044 14.8 1.0 35 142-176 147-181 (289)
305 TIGR02707 butyr_kinase butyrat 34.5 23 0.00058 13.9 1.6 193 140-370 118-341 (353)
306 PRK06065 acetyl-CoA acetyltran 34.4 12 0.00031 16.0 0.2 38 111-149 29-67 (393)
307 PRK09493 glnQ glutamine ABC tr 34.3 19 0.00048 14.6 1.1 41 136-176 127-167 (240)
308 cd03260 ABC_PstB_phosphate_tra 34.3 18 0.00046 14.7 1.1 34 143-176 139-172 (227)
309 PRK13652 cbiO cobalt transport 34.1 15 0.00039 15.2 0.7 35 142-176 134-168 (277)
310 PRK10744 phosphate transporter 34.0 20 0.00051 14.3 1.2 35 142-176 150-184 (257)
311 CHL00203 fabH 3-oxoacyl-acyl-c 33.9 17 0.00043 14.9 0.8 50 305-357 222-271 (327)
312 PRK13634 cbiO cobalt transport 33.8 18 0.00046 14.7 1.0 35 142-176 129-163 (276)
313 PRK13546 teichoic acids export 33.7 19 0.00049 14.5 1.1 35 142-176 140-174 (264)
314 PRK11153 metN DL-methionine tr 33.6 19 0.00048 14.6 1.0 37 140-176 135-171 (343)
315 PRK09580 sufC cysteine desulfu 33.5 20 0.00052 14.3 1.2 35 142-176 142-176 (248)
316 cd03292 ABC_FtsE_transporter F 33.5 16 0.00041 15.0 0.7 37 140-176 131-167 (214)
317 PRK13322 pantothenate kinase; 33.4 26 0.00066 13.5 3.8 20 4-23 2-21 (252)
318 cd03244 ABCC_MRP_domain2 Domai 33.3 20 0.00051 14.4 1.1 38 139-176 133-170 (221)
319 COG0285 FolC Folylpolyglutamat 33.3 26 0.00067 13.5 8.5 130 101-269 86-222 (427)
320 PRK13647 cbiO cobalt transport 33.3 18 0.00046 14.7 0.9 36 141-176 134-169 (273)
321 PRK13648 cbiO cobalt transport 33.2 19 0.00049 14.5 1.0 36 141-176 138-173 (269)
322 pfam05378 Hydant_A_N Hydantoin 33.1 26 0.00067 13.4 2.8 17 5-21 2-18 (175)
323 cd03258 ABC_MetN_methionine_tr 33.0 21 0.00054 14.1 1.2 37 140-176 135-171 (233)
324 PRK08223 hypothetical protein; 32.9 26 0.00067 13.4 5.1 52 137-200 119-170 (287)
325 PRK11701 phnK phosphonates tra 32.9 18 0.00046 14.7 0.8 36 141-176 147-182 (258)
326 PRK04311 selenocysteine syntha 32.7 20 0.00052 14.3 1.1 17 333-349 178-194 (465)
327 PRK08979 acetolactate synthase 32.6 27 0.00068 13.4 4.1 61 137-201 20-82 (572)
328 PRK12578 acetyl-CoA acetyltran 32.6 12 0.00032 15.9 -0.0 54 109-164 18-71 (385)
329 TIGR01137 cysta_beta cystathio 32.5 25 0.00063 13.7 1.5 171 137-347 90-291 (527)
330 PRK13632 cbiO cobalt transport 32.5 19 0.00049 14.5 0.9 37 140-176 138-174 (273)
331 PRK06363 consensus 32.4 13 0.00034 15.6 0.1 52 111-164 21-74 (387)
332 KOG2697 consensus 32.4 27 0.00069 13.4 4.2 20 261-280 221-240 (446)
333 cd03218 ABC_YhbG The ABC trans 32.3 17 0.00044 14.8 0.7 36 141-176 129-164 (232)
334 pfam03841 SelA L-seryl-tRNA se 32.2 27 0.00069 13.3 4.7 41 187-227 170-220 (367)
335 cd03265 ABC_DrrA DrrA is the A 32.1 18 0.00045 14.8 0.7 36 141-176 127-162 (220)
336 cd03147 GATase1_Ydr533c_like T 31.9 27 0.0007 13.3 1.8 60 312-376 78-143 (231)
337 pfam00005 ABC_tran ABC transpo 31.9 22 0.00057 14.0 1.2 33 142-174 87-119 (119)
338 COG0635 HemN Coproporphyrinoge 31.9 27 0.0007 13.3 2.7 16 141-156 96-111 (416)
339 COG0173 AspS Aspartyl-tRNA syn 31.8 28 0.0007 13.3 1.7 26 329-354 477-504 (585)
340 COG1101 PhnK ABC-type uncharac 31.8 26 0.00067 13.4 1.5 30 145-176 148-179 (263)
341 PRK10619 histidine/lysine/argi 31.6 22 0.00057 14.0 1.2 36 141-176 148-183 (257)
342 PRK11231 fecE iron-dicitrate t 31.5 22 0.00057 14.0 1.1 35 142-176 135-169 (255)
343 PRK10575 iron-hydroxamate tran 31.5 19 0.0005 14.4 0.8 35 142-176 144-178 (265)
344 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 31.4 22 0.00056 14.0 1.1 33 143-175 140-172 (224)
345 TIGR01068 thioredoxin thioredo 31.3 28 0.00071 13.2 1.8 25 30-55 63-90 (101)
346 TIGR03410 urea_trans_UrtE urea 31.3 20 0.00052 14.3 0.9 34 143-176 129-162 (230)
347 cd06154 YjgF_YER057c_UK114_lik 31.0 26 0.00067 13.4 1.4 45 310-354 48-93 (119)
348 PRK11247 ssuB aliphatic sulfon 30.9 19 0.00049 14.4 0.7 36 141-176 129-164 (257)
349 PRK13328 pantothenate kinase; 30.9 28 0.00072 13.2 4.1 21 4-24 3-23 (255)
350 PTZ00107 hexokinase; Provision 30.9 28 0.00073 13.2 5.4 29 184-212 93-122 (485)
351 PRK11264 putative amino-acid A 30.9 21 0.00055 14.1 1.0 36 141-176 138-173 (248)
352 cd03264 ABC_drug_resistance_li 30.7 22 0.00055 14.1 1.0 34 142-175 127-160 (211)
353 cd03236 ABC_RNaseL_inhibitor_d 30.5 20 0.0005 14.4 0.7 35 142-176 136-170 (255)
354 cd03256 ABC_PhnC_transporter A 30.5 26 0.00065 13.5 1.3 37 140-176 139-175 (241)
355 pfam07066 Phage_Lacto_M3 Lacto 30.4 29 0.00074 13.1 2.8 13 1-13 1-13 (162)
356 PRK11831 putative ABC transpor 30.3 22 0.00057 14.0 1.0 35 141-175 140-174 (269)
357 PRK10253 iron-enterobactin tra 30.2 22 0.00057 14.0 1.0 36 141-176 139-174 (265)
358 cd00829 SCP-x_thiolase Thiolas 30.2 14 0.00035 15.5 -0.1 55 109-165 13-67 (375)
359 CHL00099 ilvB acetohydroxyacid 30.1 29 0.00075 13.1 6.6 65 137-201 25-90 (588)
360 PRK11300 livG leucine/isoleuci 30.1 21 0.00054 14.2 0.8 36 141-176 149-184 (255)
361 cd03257 ABC_NikE_OppD_transpor 30.0 24 0.00061 13.8 1.1 35 142-176 142-176 (228)
362 KOG1504 consensus 30.0 29 0.00075 13.1 5.4 38 331-370 192-235 (346)
363 cd03237 ABC_RNaseL_inhibitor_d 30.0 23 0.00058 13.9 0.9 34 143-176 113-146 (246)
364 cd03214 ABC_Iron-Siderophores_ 29.9 21 0.00054 14.2 0.8 35 142-176 94-128 (180)
365 cd03298 ABC_ThiQ_thiamine_tran 29.7 21 0.00053 14.2 0.7 36 141-176 124-159 (211)
366 cd03290 ABCC_SUR1_N The SUR do 29.7 25 0.00064 13.6 1.2 34 143-176 138-171 (218)
367 PRK11308 dppF dipeptide transp 29.6 25 0.00064 13.6 1.1 36 141-176 150-185 (327)
368 COG1123 ATPase components of v 29.6 29 0.00074 13.1 1.5 37 140-176 149-185 (539)
369 pfam00195 Chal_sti_synt_N Chal 29.5 24 0.0006 13.8 1.0 62 311-372 106-171 (228)
370 PRK11614 livF leucine/isoleuci 29.5 24 0.00062 13.7 1.0 34 143-176 135-168 (237)
371 cd03259 ABC_Carb_Solutes_like 29.5 26 0.00066 13.5 1.2 36 141-176 126-161 (213)
372 PRK11178 uridine phosphorylase 29.4 29 0.00074 13.1 1.4 28 323-350 8-38 (251)
373 PRK04262 hypothetical protein; 29.1 25 0.00064 13.6 1.1 44 308-354 208-251 (346)
374 cd03213 ABCG_EPDR ABCG transpo 29.1 22 0.00057 14.0 0.8 30 146-175 112-141 (194)
375 PRK08963 fadI 3-ketoacyl-CoA t 29.1 30 0.00077 13.0 9.7 52 108-164 33-87 (436)
376 KOG2912 consensus 29.1 18 0.00047 14.6 0.4 14 185-198 98-113 (419)
377 PRK11636 mrcA peptidoglycan sy 29.1 30 0.00078 13.0 2.6 41 108-148 152-211 (850)
378 PRK13641 cbiO cobalt transport 28.9 24 0.00061 13.8 0.9 36 141-176 141-176 (286)
379 cd03254 ABCC_Glucan_exporter_l 28.9 25 0.00063 13.6 1.0 36 141-176 135-170 (229)
380 pfam02543 CmcH_NodU Carbamoylt 28.8 18 0.00046 14.7 0.3 48 331-378 166-215 (360)
381 CHL00131 ycf16 sulfate ABC tra 28.6 25 0.00064 13.6 1.0 32 145-176 150-181 (252)
382 cd03222 ABC_RNaseL_inhibitor T 28.6 26 0.00065 13.5 1.0 31 146-176 72-102 (177)
383 PRK09984 phosphonate/organopho 28.5 22 0.00055 14.1 0.6 36 141-176 148-183 (262)
384 PRK13542 consensus 28.5 25 0.00063 13.7 0.9 35 141-175 143-177 (224)
385 KOG1159 consensus 28.4 31 0.00079 12.9 1.4 24 188-216 217-241 (574)
386 PRK01911 ppnK inorganic polyph 28.0 28 0.00072 13.2 1.2 35 373-413 193-227 (290)
387 PRK10247 putative ABC transpor 28.0 26 0.00065 13.5 1.0 37 140-176 131-168 (225)
388 cd03221 ABCF_EF-3 ABCF_EF-3 E 27.9 32 0.00081 12.8 1.5 32 144-175 69-100 (144)
389 cd03266 ABC_NatA_sodium_export 27.8 29 0.00074 13.1 1.2 36 141-176 132-167 (218)
390 PRK11022 dppD dipeptide transp 27.7 22 0.00057 14.0 0.6 36 141-176 149-184 (327)
391 cd03297 ABC_ModC_molybdenum_tr 27.7 22 0.00056 14.0 0.6 36 141-176 127-162 (214)
392 cd03224 ABC_TM1139_LivF_branch 27.6 23 0.00059 13.8 0.7 35 142-176 129-163 (222)
393 PRK05790 acetyl-CoA acetyltran 27.4 22 0.00057 14.0 0.6 55 108-164 22-76 (393)
394 PRK06689 consensus 27.4 32 0.00083 12.8 10.4 53 108-164 22-76 (391)
395 KOG1394 consensus 27.3 16 0.0004 15.2 -0.3 45 310-354 302-348 (440)
396 PRK10895 putative ABC transpor 27.3 23 0.00059 13.9 0.6 36 141-176 133-168 (241)
397 PRK10261 glutathione transport 27.2 27 0.00069 13.4 0.9 37 140-176 163-199 (623)
398 cd00826 nondecarbox_cond_enzym 27.1 17 0.00043 14.9 -0.1 50 110-160 21-73 (393)
399 pfam02803 Thiolase_C Thiolase, 27.1 19 0.00049 14.5 0.2 28 312-339 25-52 (123)
400 PRK09473 oppD oligopeptide tra 27.0 26 0.00065 13.5 0.8 37 140-176 156-192 (330)
401 TIGR03269 met_CoM_red_A2 methy 26.9 25 0.00064 13.6 0.8 37 140-176 163-199 (520)
402 PRK11248 tauB taurine transpor 26.8 25 0.00063 13.7 0.7 36 141-176 124-159 (255)
403 PRK13538 cytochrome c biogenes 26.7 25 0.00065 13.6 0.7 33 143-175 127-159 (204)
404 PRK10418 nikD nickel transport 26.6 27 0.00069 13.3 0.9 36 141-176 136-171 (254)
405 cd03262 ABC_HisP_GlnQ_permease 26.6 28 0.0007 13.3 0.9 37 140-176 130-166 (213)
406 cd03270 ABC_UvrA_I The excisio 26.6 32 0.00081 12.8 1.2 35 142-176 134-170 (226)
407 TIGR00713 hemL glutamate-1-sem 26.6 30 0.00076 13.0 1.1 49 161-210 102-157 (434)
408 cd03296 ABC_CysA_sulfate_impor 26.5 24 0.00062 13.7 0.6 36 141-176 132-167 (239)
409 TIGR02026 BchE magnesium-proto 26.4 15 0.00039 15.2 -0.4 60 255-344 229-288 (506)
410 cd03238 ABC_UvrA The excision 26.4 30 0.00077 13.0 1.1 33 144-176 86-120 (176)
411 TIGR01689 EcbF-BcbF capsule bi 26.3 31 0.00079 12.9 1.1 42 88-129 77-121 (126)
412 smart00035 CLa CLUSTERIN alpha 26.2 34 0.00086 12.6 1.6 25 247-271 61-85 (216)
413 PRK00164 moaA molybdenum cofac 26.2 34 0.00086 12.6 3.9 99 212-336 70-172 (334)
414 TIGR03411 urea_trans_UrtD urea 26.2 27 0.00069 13.4 0.8 35 142-176 140-174 (242)
415 cd03299 ABC_ModC_like Archeal 26.0 26 0.00066 13.5 0.7 36 141-176 125-160 (235)
416 pfam10452 TCO89 TORC1 subunit 26.0 34 0.00087 12.6 1.4 37 160-197 58-95 (457)
417 PRK13541 cytochrome c biogenes 26.0 25 0.00064 13.6 0.6 32 144-175 122-153 (195)
418 PRK07800 consensus 26.0 25 0.00062 13.7 0.5 52 108-164 22-76 (393)
419 PRK10535 macrolide transporter 26.0 27 0.00069 13.3 0.8 38 139-176 138-175 (648)
420 KOG0994 consensus 26.0 34 0.00087 12.6 10.6 12 557-568 1621-1632(1758)
421 COG0309 HypE Hydrogenase matur 25.9 25 0.00063 13.6 0.6 11 155-165 115-125 (339)
422 PRK06845 consensus 25.8 34 0.00088 12.6 11.7 56 108-164 22-77 (392)
423 cd03232 ABC_PDR_domain2 The pl 25.8 28 0.00073 13.2 0.9 31 146-176 109-139 (192)
424 PRK07418 acetolactate synthase 25.8 34 0.00088 12.6 5.5 65 137-201 35-100 (615)
425 cd03263 ABC_subfamily_A The AB 25.8 26 0.00066 13.5 0.6 36 141-176 129-164 (220)
426 cd03250 ABCC_MRP_domain1 Domai 25.8 32 0.00082 12.8 1.1 33 144-176 126-158 (204)
427 KOG0445 consensus 25.8 25 0.00065 13.6 0.6 13 184-196 368-380 (919)
428 COG1134 TagH ABC-type polysacc 25.7 35 0.00088 12.5 2.0 22 498-519 115-136 (249)
429 PRK13540 cytochrome c biogenes 25.7 28 0.00071 13.3 0.8 33 144-176 126-158 (200)
430 PRK06504 acetyl-CoA acetyltran 25.5 24 0.00062 13.7 0.5 64 108-172 22-92 (390)
431 cd03217 ABC_FeS_Assembly ABC-t 25.4 31 0.0008 12.9 1.0 33 144-176 103-135 (200)
432 PRK09050 beta-ketoadipyl CoA t 25.4 35 0.00089 12.5 9.4 71 108-179 22-101 (401)
433 cd03267 ABC_NatA_like Similar 25.3 26 0.00066 13.5 0.6 31 145-175 153-183 (236)
434 PRK12820 bifunctional aspartyl 25.1 35 0.0009 12.5 1.6 18 552-569 628-645 (706)
435 PRK06569 F0F1 ATP synthase sub 25.1 35 0.0009 12.5 11.7 39 508-548 54-92 (157)
436 cd03247 ABCC_cytochrome_bd The 25.1 35 0.00089 12.5 1.2 33 144-176 97-129 (178)
437 TIGR02148 Fibro_Slime fibro-sl 24.9 31 0.00079 12.9 0.9 12 188-199 36-47 (92)
438 PRK07124 consensus 24.8 26 0.00067 13.5 0.5 49 108-157 22-73 (402)
439 pfam08392 FAE1_CUT1_RppA FAE1/ 24.8 34 0.00087 12.6 1.1 56 292-354 75-131 (290)
440 TIGR01930 AcCoA-C-Actrans acet 24.8 36 0.00091 12.4 3.6 70 106-179 18-99 (447)
441 pfam04684 BAF1_ABF1 BAF1 / ABF 24.7 29 0.00073 13.2 0.7 10 85-94 65-74 (508)
442 PRK07937 lipid-transfer protei 24.7 18 0.00047 14.6 -0.3 13 184-196 100-112 (352)
443 cd01684 Tet_like_IV EF-G_domai 24.6 29 0.00075 13.1 0.7 51 112-162 53-115 (115)
444 TIGR02902 spore_lonB ATP-depen 24.6 25 0.00064 13.6 0.4 185 120-371 43-276 (532)
445 cd03369 ABCC_NFT1 Domain 2 of 24.6 36 0.00092 12.4 1.3 33 143-175 123-155 (207)
446 TIGR03608 L_ocin_972_ABC putat 24.5 31 0.00079 12.9 0.9 36 141-176 130-165 (206)
447 KOG1002 consensus 24.5 36 0.00092 12.4 1.5 42 503-546 618-659 (791)
448 PRK07850 acetyl-CoA acetyltran 24.3 27 0.0007 13.3 0.5 52 108-164 22-77 (387)
449 TIGR02171 Fb_sc_TIGR02171 Fibr 24.3 37 0.00093 12.4 1.5 15 184-198 525-539 (982)
450 cd03268 ABC_BcrA_bacitracin_re 24.3 31 0.0008 12.9 0.8 33 143-175 124-156 (208)
451 cd03135 GATase1_DJ-1 Type 1 gl 24.2 37 0.00093 12.4 1.7 47 324-375 56-108 (163)
452 cd03233 ABC_PDR_domain1 The pl 24.2 35 0.00089 12.5 1.1 33 144-176 117-149 (202)
453 cd00267 ABC_ATPase ABC (ATP-bi 24.1 33 0.00084 12.7 0.9 31 146-176 81-111 (157)
454 cd03295 ABC_OpuCA_Osmoprotecti 24.0 29 0.00074 13.1 0.6 36 141-176 131-166 (242)
455 PRK13547 hmuV hemin importer A 23.9 33 0.00083 12.7 0.9 34 143-176 143-186 (273)
456 PRK11867 2-oxoglutarate ferred 23.9 37 0.00093 12.4 1.1 32 312-343 28-59 (280)
457 PRK13543 cytochrome c biogenes 23.9 30 0.00076 13.0 0.7 34 142-175 134-167 (214)
458 PRK02726 molybdopterin-guanine 23.8 37 0.00095 12.3 1.4 13 327-339 6-18 (200)
459 pfam08759 DUF1792 Domain of un 23.8 37 0.00095 12.3 2.5 54 140-196 144-198 (225)
460 PRK07801 acetyl-CoA acetyltran 23.8 28 0.00071 13.2 0.5 71 108-179 22-100 (382)
461 COG1117 PstB ABC-type phosphat 23.8 37 0.00095 12.3 1.7 31 145-175 149-179 (253)
462 PRK10851 sulfate/thiosulfate t 23.7 32 0.00081 12.8 0.8 36 141-176 132-167 (352)
463 PRK09536 btuD corrinoid ABC tr 23.5 33 0.00085 12.7 0.8 34 143-176 136-169 (409)
464 cd03248 ABCC_TAP TAP, the Tran 23.4 37 0.00095 12.3 1.1 38 139-176 144-181 (226)
465 cd03231 ABC_CcmA_heme_exporter 23.4 32 0.00083 12.8 0.8 33 144-176 124-156 (201)
466 PRK11607 potG putrescine trans 23.4 31 0.0008 12.9 0.7 36 141-176 145-180 (377)
467 cd03300 ABC_PotA_N PotA is an 23.3 31 0.00078 12.9 0.6 37 140-176 125-161 (232)
468 PRK07491 consensus 23.2 30 0.00075 13.1 0.5 52 108-164 23-77 (392)
469 PRK12330 oxaloacetate decarbox 23.2 38 0.00097 12.2 2.4 74 189-267 42-136 (499)
470 cd03269 ABC_putative_ATPase Th 23.2 29 0.00074 13.1 0.5 35 141-175 124-158 (210)
471 PRK06690 acetyl-CoA acetyltran 23.2 27 0.0007 13.3 0.4 50 108-164 21-70 (361)
472 KOG3179 consensus 23.2 26 0.00067 13.5 0.3 10 366-375 99-108 (245)
473 PRK01231 ppnK inorganic polyph 23.1 38 0.00097 12.2 1.1 24 374-397 195-218 (296)
474 TIGR02247 HAD-1A3-hyp Epoxide 23.1 37 0.00094 12.3 1.0 80 116-201 69-158 (228)
475 PRK11000 maltose/maltodextrin 23.0 33 0.00083 12.7 0.7 36 141-176 129-164 (369)
476 COG4328 Predicted nuclease (RN 23.0 38 0.00096 12.2 1.0 10 1-11 1-10 (266)
477 PRK13320 pantothenate kinase; 22.9 39 0.00099 12.2 3.7 21 4-24 5-25 (245)
478 KOG0612 consensus 22.9 39 0.00099 12.2 10.0 24 212-235 246-270 (1317)
479 cd03246 ABCC_Protease_Secretio 22.9 34 0.00088 12.5 0.8 31 146-176 97-127 (173)
480 TIGR01368 CPSaseIIsmall carbam 22.5 39 0.001 12.1 4.7 56 137-196 135-206 (383)
481 PRK10419 nikE nickel transport 22.5 38 0.00096 12.3 1.0 36 141-176 147-182 (266)
482 PRK09065 glutamine amidotransf 22.3 40 0.001 12.1 1.5 53 325-382 53-112 (238)
483 PRK10818 cell division inhibit 22.2 40 0.001 12.1 1.4 15 186-200 31-47 (270)
484 cd03216 ABC_Carb_Monos_I This 22.1 37 0.00094 12.3 0.8 32 145-176 82-113 (163)
485 COG0796 MurI Glutamate racemas 22.1 40 0.001 12.1 1.3 41 329-372 178-218 (269)
486 TIGR01124 ilvA_2Cterm threonin 22.1 40 0.001 12.1 2.6 47 329-375 169-216 (508)
487 PRK09452 potA putrescine/sperm 22.1 40 0.001 12.1 1.3 36 141-176 143-178 (378)
488 PRK10030 putative peptidoglyca 22.1 40 0.001 12.1 1.6 16 340-355 158-173 (199)
489 PRK08235 acetyl-CoA acetyltran 22.0 28 0.00072 13.2 0.2 20 315-334 297-316 (393)
490 TIGR01234 L-ribulokinase L-rib 21.9 30 0.00076 13.0 0.3 63 313-379 445-508 (563)
491 cd06150 YjgF_YER057c_UK114_lik 21.8 40 0.001 12.0 1.1 52 308-359 31-85 (105)
492 PRK13548 hmuV hemin importer A 21.8 35 0.00088 12.5 0.7 33 143-175 132-170 (257)
493 PRK08947 fadA 3-ketoacyl-CoA t 21.8 26 0.00067 13.4 0.0 20 315-334 288-307 (387)
494 cd00751 thiolase Thiolase are 21.7 25 0.00065 13.6 -0.0 22 313-334 28-49 (386)
495 cd06477 ACD_HspB3_Like Alpha c 21.7 23 0.00058 13.9 -0.3 27 459-485 57-83 (83)
496 PTZ00287 6-phosphofructokinase 21.6 41 0.001 12.0 2.5 98 22-128 980-1080(1439)
497 cd03301 ABC_MalK_N The N-termi 21.6 35 0.00089 12.5 0.6 33 143-175 128-160 (213)
498 cd01680 EFG_like_IV Elongation 21.6 41 0.001 12.0 2.3 51 112-162 53-116 (116)
499 PRK07025 consensus 21.5 22 0.00056 14.0 -0.4 20 315-334 297-316 (393)
500 cd03294 ABC_Pro_Gly_Bertaine T 21.5 33 0.00083 12.7 0.5 33 143-175 158-190 (269)
No 1
>TIGR02350 prok_dnaK chaperone protein DnaK; InterPro: IPR012725 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes, the grpE protein is a co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold . DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for the Mycoplasma sequence) found clustered with other genes of this systems. This entry excludes DnaK homologues that are not DnaK itself, such as the heat shock cognate protein HscA (IPR010236 from INTERPRO). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of DnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; the lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=100.00 E-value=0 Score=1370.63 Aligned_cols=596 Identities=66% Similarity=1.026 Sum_probs=586.3
Q ss_pred CEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHH
Q ss_conf 16998048660699999899559975689862562799994899899667898633308351100206754986872678
Q gi|255764494|r 3 KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTV 82 (652)
Q Consensus 3 ~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 82 (652)
+|||||||||||||||+.+|.|.||+|.+|.|+|||+|+|.++|+++||..|++|++.||.+||+++||+||+.|. .+
T Consensus 1 KiiGIDLGTTNS~vAV~eGg~p~Vi~n~EG~rTtPS~VAF~~~Ge~lVG~~AkRQAv~NP~~Ti~siKR~~G~~~~--e~ 78 (598)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRKFK--EV 78 (598)
T ss_pred CEEEEECCCCCEEEEEEECCCCEEECCCCCCCCCCCEEEECCCCCEECCHHHHHHHHHCHHHHHHHHHHHHCCCHH--HH
T ss_conf 9677304741016877866866685078879546617898489877714154134320734799999877377616--88
Q ss_pred HHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 76520198699975998279995795871999999999999999999838847336985377887402578863442112
Q gi|255764494|r 83 AKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAG 162 (652)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AG 162 (652)
....+..||+++...++.+.+.+.+|.|+|+||+|+||++||..||.|||.+|+.+||||||||+|+||+||+||++|||
T Consensus 79 ~~~~~~~py~vv~~~~~~~~~~~~~K~y~P~eISA~iL~klk~~AE~yLGe~v~~AVITVPAYFnDaQR~ATKdAG~IAG 158 (598)
T TIGR02350 79 KEEAKRVPYKVVEGDNGDVRVEVRGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAG 158 (598)
T ss_pred HHHHHHCCEEEEECCCCEEEEEECCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 98985198478854886489996186107177999999999999998628530225777115677135688986310058
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 22222221024788886034456550799872441145431010231465420133224552134476655367876420
Q gi|255764494|r 163 LDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKE 242 (652)
Q Consensus 163 l~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~ 242 (652)
|+|+|+||||||||||||+++..+..|||||+|||||||||+++.+|+|+|+||.||++|||+|||+.|++|+..+|++.
T Consensus 159 L~V~RIINEPTAAALAYGldk~~~~~i~VfDLGGGTFDvSILe~gdG~feV~sT~GDt~LGGdDFD~~Iidwl~~~fk~~ 238 (598)
T TIGR02350 159 LEVLRIINEPTAAALAYGLDKKKDEKILVFDLGGGTFDVSILEIGDGVFEVKSTAGDTHLGGDDFDERIIDWLADEFKKE 238 (598)
T ss_pred CEEEEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 31377417713898860557667867999975888324688875686899985168887875205799999999998876
Q ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHH
Q ss_conf 1-343024478999999999988541155650358630443467887212687311000012342000011001111010
Q gi|255764494|r 243 N-GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQD 321 (652)
Q Consensus 243 ~-~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~ 321 (652)
+ ++|++.|..|++||+.+|||||+.||+..++.|++|++..+..|++++..+|||++||+|+.+|++++..||+++|.+
T Consensus 239 ~~GiDL~~D~~ALQRL~eAAEkAKieLS~~~~T~InLPFIT~~~~GP~hL~~~LtRA~fe~l~~dLv~~~~~p~~~aL~D 318 (598)
T TIGR02350 239 EQGIDLSKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADASGPKHLELTLTRAKFEELTADLVERTKEPVRQALKD 318 (598)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 33888112478988889999886585256636664155364288887013203357789999999999989999999975
Q ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC-CCCHHEECCCCCCCCCCCCC
Q ss_conf 13563110146630785305677886541011111113565310111110002234675-22100002356653222334
Q gi|255764494|r 322 AGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGD-VKDLLLLDVTPLSLGIETLG 400 (652)
Q Consensus 322 a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~-~~~~~~~dv~p~slgie~~~ 400 (652)
|++++++|+.|+||||+||||.|++.++++||+++.+++||||+||+|||+||++|.|+ ++|++|+||+|+||||||.|
T Consensus 319 A~l~~~~I~~v~LVGG~TRiP~V~~~V~~~~GK~p~~~vNPDEvVAiGAAiQgGVL~Gd~vkDvlLLDVTPLsLGiET~G 398 (598)
T TIGR02350 319 AGLSASDIDEVILVGGSTRIPAVQELVKEFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDEVKDVLLLDVTPLSLGIETLG 398 (598)
T ss_pred CCCCHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHH
T ss_conf 37884366668985588412489999998729887888880588888788875431787044489861356511013010
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHH
Q ss_conf 20246633898110245665456764122211000012222222223345310245676744353200001001100122
Q gi|255764494|r 401 GVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQ 480 (652)
Q Consensus 401 ~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGil~ 480 (652)
|+|++||.|||+||++|+++|+|+.|||++|.|+|+||||.++.||+.||+|.|.||||+|||.|||+|||+||+||||+
T Consensus 399 GV~T~lI~RNTTIP~~KsqvFSTA~DnQ~~V~I~VlQGER~~A~DNk~LG~F~L~GI~paPRG~PQIEVTFDIDANGIl~ 478 (598)
T TIGR02350 399 GVMTKLIERNTTIPTKKSQVFSTAADNQPAVEIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILH 478 (598)
T ss_pred HHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEEEEECCHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEEECCCCEEE
T ss_conf 01311102677447534520323056895679998608813344024436621068888956887557876525884488
Q ss_pred HHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 21023444200000000000112456689999999989998999999999999999999999999872202998999999
Q gi|255764494|r 481 VSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSI 560 (652)
Q Consensus 481 Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~~i 560 (652)
|+|.|+.||+++.|+|+.+++||++||+||++||+.|+++|+..|+.+|+||++|+++|++++.|.+.+++++.++++.+
T Consensus 479 V~AkD~~TgK~q~I~I~~~s~Ls~~Ei~rm~~eAe~~~~~D~~~~E~~e~rN~ad~~~y~~e~~l~e~gd~~~~~~k~~~ 558 (598)
T TIGR02350 479 VSAKDKATGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEVEARNEADSLIYQAEKTLKEAGDKLPAEEKEKI 558 (598)
T ss_pred EEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 98865477850047881278988899999999999989863888888875336899999999998742101477889999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987248987899999999999999999999998
Q gi|255764494|r 561 RESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYE 601 (652)
Q Consensus 561 ~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~ 601 (652)
+..++++++++.+.+.... ++.+.++|++..++++..+|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~~~~~~~~~~~ 598 (598)
T TIGR02350 559 EKAVAELKEALKGEDVEEK-IKAKTEELQKALQKLAEALYA 598 (598)
T ss_pred HHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999850464789-999999999999999997349
No 2
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=0 Score=1302.54 Aligned_cols=630 Identities=67% Similarity=1.043 Sum_probs=605.5
Q ss_pred CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf 98169980486606999998995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS 80 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (652)
||+|||||||||||+||++++|.|+||+|.+|+|+|||+|+|.++++++||+.|++++.+||+|||+++|||||+.|+|+
T Consensus 1 M~~VIGIDLGTTnS~VAv~~~g~~~iI~n~~G~r~tPSvV~f~~~g~~lVG~~Ak~~~~~nP~nti~~~KRliG~~~~d~ 80 (631)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGKRTTPSVVAFTKDGEILVGQPAKRQAVTNPENTIYSIKRLMGRRFEEE 80 (631)
T ss_pred CCCEEEEECCHHCEEEEEEECCEEEEEECCCCCEECCEEEEEECCCCEEECHHHHHHHHHCCCCEEHHHHHHHCCCCCCH
T ss_conf 99889998580208999998998899988999973588999989998993489998667684001045488728988737
Q ss_pred HHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 78765201986999759982799957958719999999999999999998388473369853778874025788634421
Q gi|255764494|r 81 TVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRI 160 (652)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~ 160 (652)
.++...+.+||+++.. ++.+.+.+.++.|+|+||+||+|++||+.|+.++|.++++||||||+||++.||+|+++||++
T Consensus 81 ~vq~~~~~~p~~v~~~-~~~~~v~~~~k~~sPeEIsA~IL~~Lk~~Ae~~lg~~v~~aVITVPAyFnd~QRqAtk~Aa~i 159 (631)
T PRK00290 81 EVQKDIKLVPYKIVKD-NGDAWVEADGKKYTPQEISAMILQKLKKTAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKI 159 (631)
T ss_pred HHHHHHHCCCEEEEEC-CCCEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 7876530487489825-992599989989859999999999999999997189878789998999998999999999997
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCC-CCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 122222222102478888603445-6550799872441145431010231465420133224552134476655367876
Q gi|255764494|r 161 AGLDVLRIINEPTAAALAYGLDKK-DARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTF 239 (652)
Q Consensus 161 AGl~v~~li~EptAAal~Y~~~~~-~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~ 239 (652)
|||+|+|||||||||||+||+++. .++++||||||||||||||+++.+|+|+|+++.||++|||+|||++|++||+++|
T Consensus 160 AGL~VlrlInEPTAAAlAYgldk~~~~~~vlVyDlGGGTfDVSIl~~~~g~feVlat~GD~~LGG~DfD~~i~~~l~~~f 239 (631)
T PRK00290 160 AGLEVLRIINEPTAAALAYGLDKKEGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLVDEF 239 (631)
T ss_pred CCCCEEEEECCHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 59965764246999981640565689748999988986188898993399899999348888382899999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 42013430244789999999999885411556503586304434678872126873110000123420000110011110
Q gi|255764494|r 240 KKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCL 319 (652)
Q Consensus 240 ~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L 319 (652)
++++++|++.++++++||+.+||+||+.||++.+++|++|++..+..++.+|+.+|||++||++|.|+++|+..+|+++|
T Consensus 240 k~~~~idl~~d~~al~rL~~aaEkaK~~LS~~~~a~i~l~~i~~~~~g~~~~~~~iTR~~FE~l~~~l~~r~~~~v~~aL 319 (631)
T PRK00290 240 KKEQGIDLRKDKMALQRLKEAAEKAKIELSSSQQTEINLPFITADASGPKHLDLKLTRAKFEELTEDLVERTIEPCRQAL 319 (631)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87618875677999999999999999970658726998402335788865799997899999989999999999999999
Q ss_pred HHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCCC
Q ss_conf 10135631101466307853056778865410111111135653101111100022346752210000235665322233
Q gi|255764494|r 320 QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETL 399 (652)
Q Consensus 320 ~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~~ 399 (652)
++|++++++|+.|+|||||||||+||++|+++||+++++++|||||||+|||+||++|++++++++++||+|+|||||+.
T Consensus 320 ~~A~l~~~dId~ViLVGGsTRiP~Vq~~v~~~Fgk~~~~~inPDeaVA~GAAiqa~iLsg~~~d~~LlDVtPlSLGiet~ 399 (631)
T PRK00290 320 KDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAVGAAIQGGVLAGDVKDVLLLDVTPLSLGIETL 399 (631)
T ss_pred HHHCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEC
T ss_conf 98089822215999917824567999999999688977796912689987999998863876673689603453137863
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHH
Q ss_conf 42024663389811024566545676412221100001222222222334531024567674435320000100110012
Q gi|255764494|r 400 GGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIV 479 (652)
Q Consensus 400 ~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGil 479 (652)
||.|++||||||+||++++++|+|+.|||+.+.|+||||||.++++|++||+|+|.||||+|+|.|+|+|||++|.||||
T Consensus 400 gg~~~~iI~rNt~IP~~~s~~FtT~~D~Q~~v~I~V~qGEr~~~~dN~~Lg~f~l~gippap~G~~~I~Vtf~iD~nGil 479 (631)
T PRK00290 400 GGVMTKLIERNTTIPTKKSQVFSTAEDNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIL 479 (631)
T ss_pred CCEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEE
T ss_conf 97479963179836821216623404799638999995676546788578899987989788999718999998799559
Q ss_pred HHHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22102344420000000000011245668999999998999899999999999999999999999987220299899999
Q gi|255764494|r 480 QVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKS 559 (652)
Q Consensus 480 ~Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~~ 559 (652)
+|+|.|+.||++++|+|+++++||++||++|+++|+.++++|++.|+++|+||++|+|||++++.|+++++++++++|+.
T Consensus 480 ~VsA~d~~tg~~~~i~i~~~~~ls~~ei~~m~~~a~~~~~~D~~~~~~~e~~n~~e~~i~~~~~~l~~~~~~~~~~~k~~ 559 (631)
T PRK00290 480 HVSAKDKGTGKEQKITIKASSGLSEEEIERMVKDAEANAEEDKKRKEEVEARNQADSLIYQTEKQLKELGDKVPADEKEK 559 (631)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999757797126999479998999999999999988998999999999999999999999999986352099999999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEECCC
Q ss_conf 9999999999872489878999999999999999999999984034455666666655556666786665433562352
Q gi|255764494|r 560 IRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKDD 638 (652)
Q Consensus 560 i~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dad~e~v~~~ 638 (652)
++.+++++++||+++ |...++.++++|++.++++++++|+++....+. ....+.....|+++||||++++++
T Consensus 560 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 631 (631)
T PRK00290 560 IEAAIKELKEALKGE--DKEAIKAKTEELQQASQKLGEAMYQQAAAAAAG-----AAAGASAAKDDDVVDAEFEEVKDK 631 (631)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCCCCCCCCCCCEECCCEEECCCC
T ss_conf 999999999987558--999999999999999999999999855478999-----998877888898224715874779
No 3
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=0 Score=1292.56 Aligned_cols=609 Identities=58% Similarity=0.950 Sum_probs=592.2
Q ss_pred CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf 98169980486606999998995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS 80 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (652)
|++|||||||||||+||++++|.|+||+|.+|+|.|||+|+|.++++++||+.|++++.+||+|||+++||||||+|+|+
T Consensus 1 M~~VIGIDLGTTnS~VAv~~~G~~~iI~n~~G~r~tPSvV~f~~~ge~lVG~~Ak~q~~~nP~nTi~~~KRliGr~~~d~ 80 (655)
T PRK13411 1 MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWEDT 80 (655)
T ss_pred CCCEEEEECCHHHEEEEEEECCEEEEEECCCCCEECCEEEEEECCCCEEECHHHHHHHHHCCCCEEHHHHHHCCCCCCHH
T ss_conf 99869998680338999998998899887999923167999989997994789998657582035046587609996025
Q ss_pred HHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 78765201986999759982799957958719999999999999999998388473369853778874025788634421
Q gi|255764494|r 81 TVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRI 160 (652)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~ 160 (652)
.. ..+++||+++++.++.+.+.+.++.|+|+||+||+|++||+.||.++|.+|++|||||||||++.||+||++||++
T Consensus 81 ~~--~~~~~py~vv~~~~~~v~v~i~~k~~sPeEIsA~IL~~LK~~AE~~lg~~v~~AVITVPAyFnd~QRqAtkdAa~i 158 (655)
T PRK13411 81 EE--ERSRVPYKCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTI 158 (655)
T ss_pred HH--HHHCCCEEEEECCCCCEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 77--8643983799779983799989989869999999999999999998589988599998999998999999999997
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCC-CCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 122222222102478888603445-6550799872441145431010231465420133224552134476655367876
Q gi|255764494|r 161 AGLDVLRIINEPTAAALAYGLDKK-DARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTF 239 (652)
Q Consensus 161 AGl~v~~li~EptAAal~Y~~~~~-~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~ 239 (652)
|||+|+|||||||||||+||+++. .+++|||||||||||||||+++.+|+|+|++++||++|||+|||++|++||+++|
T Consensus 159 AGL~VlRLINEPTAAALAYGldk~~~~~~vlVyDLGGGTfDVSIl~i~~GvfeVlaT~GD~~LGG~DfD~~Lv~~l~~~f 238 (655)
T PRK13411 159 AGLEVLRIINEPTAAALAYGLDKQDQEQRILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENF 238 (655)
T ss_pred CCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 59960444354779999961646788737999977996376678872198899999506887584888999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 42013430244789999999999885411556503586304434678872126873110000123420000110011110
Q gi|255764494|r 240 KKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCL 319 (652)
Q Consensus 240 ~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L 319 (652)
++++++|++.|+++++||+.+||+||+.||++.++.+++|++..+..++.+|+.+|||++||++|.|+++|++.||+++|
T Consensus 239 ~~~~~iDl~~d~~al~rLr~aaEkAK~~LS~~~~t~i~l~~i~~d~~g~~~l~~~lTR~~FE~L~~~L~~rt~~pv~~aL 318 (655)
T PRK13411 239 QQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELAKDLVEATIEPVQQAL 318 (655)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77415774329999999999999999983766606897312225678873689997099999999999999998899999
Q ss_pred HHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCC
Q ss_conf 101356311014663078530567788654101-1111113565310111110002234675221000023566532223
Q gi|255764494|r 320 QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFF-NKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIET 398 (652)
Q Consensus 320 ~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~f-g~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~ 398 (652)
++|++++++||.|+|||||||||+||+.|+++| |+++.+++|||||||+|||+||++|++++++++++||+|+|||||+
T Consensus 319 ~dA~l~~~dId~ViLVGGSTRIP~Vq~~v~~~F~gk~~~~~iNPDEaVA~GAAiqa~iL~g~~~d~~llDV~PlsLGiet 398 (655)
T PRK13411 319 KDAGLTPEDIDRIILVGGSTRIPAVQEAIQQFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIET 398 (655)
T ss_pred HHHCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEE
T ss_conf 98099831178999988814657999999998289988889782168988699988875377554389984272368897
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHH
Q ss_conf 34202466338981102456654567641222110000122222222233453102456767443532000010011001
Q gi|255764494|r 399 LGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGI 478 (652)
Q Consensus 399 ~~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGi 478 (652)
.||.|++||||||+||++++++|+|+.|||+.+.|+||||||.++++|++||+|.|.||||+|+|.|+|+|||++|.|||
T Consensus 399 ~gg~~~~iI~rnt~iP~~~~~~ftT~~D~Qt~v~i~V~qGEr~~~~dn~~Lg~f~l~gipp~p~G~~~I~Vtf~id~nGi 478 (655)
T PRK13411 399 LGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGI 478 (655)
T ss_pred CCCEEEECCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCHHHHHCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCC
T ss_conf 69765304789881571130564604689846999860673124514875669998288977899975999999859986
Q ss_pred HHHHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 22210234442000000000001124566899999999899989999999999999999999999998722029989999
Q gi|255764494|r 479 VQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQK 558 (652)
Q Consensus 479 l~Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~ 558 (652)
|+|+|.|+.||++++|+|+++++||++||++|++++++++++|++.|+++++||++|+|+|++++.|+++++++++++|+
T Consensus 479 l~VsA~d~~tg~~~~i~i~~~~~Ls~~ei~~m~~~a~~~~~~D~~~~e~~e~~n~~e~~i~~~~~~l~~~~~~~~~~~k~ 558 (655)
T PRK13411 479 LKVSAQDQGTGREQSIRITNTGGLSSSEIERMRQEAEKYAEEDRRRKQLVELKNQADSLLYSYESTLKENGELISEELKQ 558 (655)
T ss_pred EEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 89999974779834079936999799999999999997598789999999989899999999999988503409999999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999872489878999999999999999999999984034455666
Q gi|255764494|r 559 SIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAAD 611 (652)
Q Consensus 559 ~i~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~~~~~ 611 (652)
.++.+++++++||++++.+..+++.+.++|++.+++++.++|++.+.+....+
T Consensus 559 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 611 (655)
T PRK13411 559 RAEQKVEQLAAALTDPNISLEELRQQLEEFRQVLLAIGAEVYQQGNSQTDTEQ 611 (655)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999999976899388999999999999999999999986244533358
No 4
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=0 Score=1293.76 Aligned_cols=608 Identities=59% Similarity=0.958 Sum_probs=589.5
Q ss_pred CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf 98169980486606999998995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS 80 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (652)
+++|||||||||||+||++++|.|+||+|+.|+|.|||+|+|.+ ++++||+.|++++.+||.|||+++||||||.|+|+
T Consensus 26 ~g~VIGIDLGTTnS~VAv~~~g~~~II~N~~G~r~tPSvV~f~~-~e~lVG~~Ak~~~~~nP~nTi~~~KRliGr~f~d~ 104 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKG-SEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDE 104 (657)
T ss_pred CCCEEEEECCCCCEEEEEEECCEEEEEECCCCCCCCCEEEEECC-CCEEEHHHHHHHHHHCCHHHHHHHHHHHCCCCCCH
T ss_conf 88789996386447899998998899888999944165999889-98885599998778682504999998708988867
Q ss_pred HHHHHHHCCCEEEEECCCCEEEEEE-CCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 7876520198699975998279995-795871999999999999999999838847336985377887402578863442
Q gi|255764494|r 81 TVAKDASLVPFKIVEGKGGDAWIEA-QGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGR 159 (652)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~ 159 (652)
.++.+.+++||+++...++.+.+.. .++.|+|+||+||+|++||+.||.++|.+|++|||||||||++.||+||++||+
T Consensus 105 ~vq~~~k~~py~i~~~~~g~~~v~~~~gk~~sPeeIsA~IL~kLK~~AE~~lg~~V~~AVITVPAyFnd~QR~AtkdAa~ 184 (657)
T PTZ00186 105 HIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGT 184 (657)
T ss_pred HHHHHHHCCCEEEEECCCCCEEEEECCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 88876524984899879996468958976884999999999999999999858997719999589899899999999999
Q ss_pred HCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11222222221024788886034456550799872441145431010231465420133224552134476655367876
Q gi|255764494|r 160 IAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTF 239 (652)
Q Consensus 160 ~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~ 239 (652)
+|||+|+|||||||||||+||+++..+++|||||||||||||||+++.+|+|+|+++.||++|||+|||.+|++||+++|
T Consensus 185 iAGL~VlrlInEPTAAALAYGl~~~~~~~vlVyDLGGGTfDVSIl~~~~g~feVlat~GD~~LGG~DfD~~i~~~~~~~f 264 (657)
T PTZ00186 185 IAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEF 264 (657)
T ss_pred HCCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 84994110005577999982566678847999987996178899999788689984468877676899999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 42013430244789999999999885411556503586304434678872126873110000123420000110011110
Q gi|255764494|r 240 KKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCL 319 (652)
Q Consensus 240 ~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L 319 (652)
++++++|++.++++++||+.+||+||+.||++.++++++++++.+..++.++.++|||++||++|.|+++|++.+|+++|
T Consensus 265 ~~~~~id~~~~~~al~rL~~aaEkaK~~LS~~~~~~i~l~~i~~~~dg~~~~~~~iTR~eFE~L~~~Ll~rt~~~v~~aL 344 (657)
T PTZ00186 265 RKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCM 344 (657)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88639985306999999999999999970766222456540014789872469997599998688999999999999999
Q ss_pred HHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCCC
Q ss_conf 10135631101466307853056778865410111111135653101111100022346752210000235665322233
Q gi|255764494|r 320 QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETL 399 (652)
Q Consensus 320 ~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~~ 399 (652)
++|++++++||.|+|||||||||.||++|+++||+++++++|||||||+|||+||++|++++++++++||+|+|||||+.
T Consensus 345 ~dAgl~~~dId~VILVGGSTRIP~Vq~~l~~~Fgkep~~~iNPDEaVA~GAAiqa~iL~g~~~~~~LlDVtPlSLGiet~ 424 (657)
T PTZ00186 345 KDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETL 424 (657)
T ss_pred HHHCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEEC
T ss_conf 98189987800899957841547999999998589977797911899998999888763875534899855551799971
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHH
Q ss_conf 42024663389811024566545676412221100001222222222334531024567674435320000100110012
Q gi|255764494|r 400 GGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIV 479 (652)
Q Consensus 400 ~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGil 479 (652)
||.|++||||||+||++++++|+|+.|||+.+.|+||||||.++.+|+.||+|.|.||||+|+|.|+|+|+|++|+||||
T Consensus 425 gg~~~~iI~RNT~IP~~ks~~FtT~~DnQt~v~I~V~QGEr~~~~dN~~LG~F~L~gIppap~G~p~IeVtF~iD~nGiL 504 (657)
T PTZ00186 425 GGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGIC 504 (657)
T ss_pred CCEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCE
T ss_conf 86688623699815721268778647895078999957987211578378899981889888999849999995598725
Q ss_pred HHHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22102344420000000000011245668999999998999899999999999999999999999987220299899999
Q gi|255764494|r 480 QVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKS 559 (652)
Q Consensus 480 ~Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~~ 559 (652)
+|+|.|+.||++++|+|+++++||++||++|+++|++|+++|++.|+++|+||++|+|||++|++|++. +++++++|+.
T Consensus 505 ~VsA~d~~Tgk~~~i~I~~~~gLs~~ei~~mi~ea~~~~~~D~~~re~~e~kn~~e~~i~~~~~~l~~~-~~~~~~~k~~ 583 (657)
T PTZ00186 505 HVTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW-KYVSDAEKEN 583 (657)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHH
T ss_conf 889998688975148980799979999999999999889988999999998888999999999764020-3599889999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999987248987899999999999999999999998403445566
Q gi|255764494|r 560 IRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAA 610 (652)
Q Consensus 560 i~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~~~~ 610 (652)
++.+++++++|+.+.+.....++.+.++|++.++++++++|++.+.+.+..
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~ 634 (657)
T PTZ00186 584 VKTLVAELRKAMENPNVAKDDLAAATDKLQKAVMECGRTEYQQAAAANSGS 634 (657)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999999997489847899999999999999999999998611678999
No 5
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=0 Score=1258.82 Aligned_cols=620 Identities=59% Similarity=0.919 Sum_probs=597.1
Q ss_pred CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf 98169980486606999998995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS 80 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (652)
|++|||||||||||+||++++|+|+||+|++|+|.|||+|+|.++++++||..|++++.+||+|||+++|||||++|++
T Consensus 1 M~~VIGIDlGTTnS~VAv~~~g~~~iI~n~~g~r~tPSvV~f~~~~~~lvG~~Ak~~~~~np~nti~~~KRliGr~~~d- 79 (622)
T CHL00094 1 MGKVVGIDLGTTNSVVAVMEGGKPTVITNAEGFRTTPSVVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFEE- 79 (622)
T ss_pred CCCEEEEECCHHCEEEEEEECCEEEEEECCCCCEEECEEEEEECCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCCHHH-
T ss_conf 9988999758020899999899889998899995205799998999899459999877768402525889874898177-
Q ss_pred HHHHHHHCCCEEEEECCCCEEEEEE--CCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 7876520198699975998279995--79587199999999999999999983884733698537788740257886344
Q gi|255764494|r 81 TVAKDASLVPFKIVEGKGGDAWIEA--QGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAG 158 (652)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa 158 (652)
++...+.+||++..+.++.+.+.. .++.|+|+||+||+|++||+.|+.++|.+|++||||||+||++.||+|+++||
T Consensus 80 -v~~~~~~~p~~v~~~~~g~~~v~~~~~~k~~speeisA~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~d~QR~At~~Aa 158 (622)
T CHL00094 80 -ISDESKQVPYKVKKDQNGNIKIECPALNKEFAPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAG 158 (622)
T ss_pred -HHHHHHHCCCEEEECCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf -7888874994799779994799975788189699999999999999999984898676899989989979999999999
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 21122222222102478888603445655079987244114543101023146542013322455213447665536787
Q gi|255764494|r 159 RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT 238 (652)
Q Consensus 159 ~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~ 238 (652)
++|||+|+|||||||||||+||+++..+++|||||||||||||||+++.+|+|+|+++.||++|||+|||.+|++||+++
T Consensus 159 ~iAGl~vlrlInEPTAAAlaYg~~~~~~~~vlVyDlGGGTfDvSil~~~~g~~eVlat~GD~~LGG~DfD~~i~~~l~~~ 238 (622)
T CHL00094 159 KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVDWLIDE 238 (622)
T ss_pred HHCCCCEEEEECCHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 87197425541616899999604457897699998898648877788618839999941798757789999999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 64201343024478999999999988541155650358630443467887212687311000012342000011001111
Q gi|255764494|r 239 FKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKC 318 (652)
Q Consensus 239 ~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~ 318 (652)
|+++|++|++.|+++++||+.+||++|+.||++.++++++|++..+..++.+|+.+|||++||++|+|+++|+..+|+++
T Consensus 239 f~~k~~id~~~d~~a~~rL~~aaEkaK~~LS~~~~~~i~l~~i~~~~dg~~~~~~~itR~~FE~l~~~l~~r~~~~v~~~ 318 (622)
T CHL00094 239 FKKKEGIDLKKDRQALQRLTEAAEKAKIELSNVTQTEINLPFITATPTGPKHLEKTLTRAKFEELCSDLIDRCRIPVENA 318 (622)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86642134344799999999999999997588765047731332577887045789739999989999999999999999
Q ss_pred CHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCC
Q ss_conf 01013563110146630785305677886541011111113565310111110002234675221000023566532223
Q gi|255764494|r 319 LQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIET 398 (652)
Q Consensus 319 L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~ 398 (652)
|++|++++++|+.|+|||||||||+||++|+++||+++.+++|||||||+|||+||++|++++++++++||+|+|||||+
T Consensus 319 L~~a~l~~~dId~ViLVGGstRiP~V~~~l~~~fgk~~~~~inpDeaVA~GAAiqa~~ls~~~~~~~l~Dv~PlslGie~ 398 (622)
T CHL00094 319 LKDAKLDKSDIDEVVLVGGSTRIPAIQELVKSLLGKDPNQSVNPDEVVAIGAAIQAGVLAGEVKDILLLDVTPLSLGVET 398 (622)
T ss_pred HHHCCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEE
T ss_conf 99819998894399993881256789999999858996779681589999899986765486553599998445178897
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHH
Q ss_conf 34202466338981102456654567641222110000122222222233453102456767443532000010011001
Q gi|255764494|r 399 LGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGI 478 (652)
Q Consensus 399 ~~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGi 478 (652)
.||.|++||||||+||++++++|+|+.|||+.+.|+||||||.++.+|++||+|+|.||||+|+|.|+|+|||++|.|||
T Consensus 399 ~gg~~~~ii~rnt~iP~~~~~~ftt~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gipp~p~G~~~I~Vtf~id~nGi 478 (622)
T CHL00094 399 LGGVMTKIIPRNTTIPTKKSEIFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGI 478 (622)
T ss_pred CCCEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCC
T ss_conf 29835776238986786554011565889844899972365010044857859999288978899984999999758886
Q ss_pred HHHHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 22210234442000000000001124566899999999899989999999999999999999999998722029989999
Q gi|255764494|r 479 VQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQK 558 (652)
Q Consensus 479 l~Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~ 558 (652)
|+|+|.++.||++++++|+++++||+++|++|++++++|+++|++.|+++++||++|+|||+++++|+++++++++++|+
T Consensus 479 l~VsA~d~~tg~~~~i~i~~~~~ls~~ei~~~~~ea~~~~~~D~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~ek~ 558 (622)
T CHL00094 479 LSVTAKDKGTGKEQSITITGASTLSEDEVERMVKEAEKNAAEDKEKRENIDLKNQAESLCYQSEKQLKEFEDKIDEEKKQ 558 (622)
T ss_pred CCCCEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 25503216888530379888999899999999999998899899999989988899999999999999735509999999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEC
Q ss_conf 999999999998724898789999999999999999999999840344556666666555566667866654335623
Q gi|255764494|r 559 SIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIK 636 (652)
Q Consensus 559 ~i~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dad~e~v~ 636 (652)
.++..++++++||++++. +.++.++++|++.++++++++|+++... ......|+++||||++++
T Consensus 559 ~i~~~l~~~~~~l~~~~~--~~~~~~~~~l~~~~~~~~~~~y~~~~~~------------~~~~~~~~~~da~~~~~~ 622 (622)
T CHL00094 559 KIENLIEKLREALSKDNY--EEIKELSEELQTALMEIGKQVYSKTSTT------------GPASNLDDVIDADFSEEK 622 (622)
T ss_pred HHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHCCCCC------------CCCCCCCCCCCCCEEECC
T ss_conf 999999999998754899--9999999999999999999998605568------------999889985265437569
No 6
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=0 Score=1258.79 Aligned_cols=603 Identities=55% Similarity=0.894 Sum_probs=583.2
Q ss_pred CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf 98169980486606999998995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS 80 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (652)
|++|||||||||||+||++++|.|+||+|.+|.|+|||+|+|.++++++||+.|++++.+||.|||+++|||||+.|++
T Consensus 1 Mg~VIGIDLGTTNS~VAv~~~G~~~VI~N~~G~rtTPSvVaf~~dge~lVG~~Ak~qa~~nP~nTi~~vKRlIGr~f~d- 79 (719)
T PRK13410 1 MGKVVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFNKDGERLVGQMARRQAVLNPQNTFYGVKRFIGRRYSE- 79 (719)
T ss_pred CCCEEEEECCCCCEEEEEEECCEEEEEECCCCCEECCEEEEEECCCCEEECHHHHHHHHHCCHHHHHHHHHHHCCCCHH-
T ss_conf 9986999858102899999899889998899981036799997999899169999876768142199999984898033-
Q ss_pred HHHHHHHCCCEEEEECCCCEEEEEEC--CEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 78765201986999759982799957--9587199999999999999999983884733698537788740257886344
Q gi|255764494|r 81 TVAKDASLVPFKIVEGKGGDAWIEAQ--GKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAG 158 (652)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa 158 (652)
++...+.+||++..+.++.+.+.+. ++.|+|+||+||+|++||+.|+.++|.+|++|||||||||++.||+||++||
T Consensus 80 -v~~e~k~~Py~i~~d~~g~i~v~~~~~~k~~sPeEIsA~ILkkLK~~AE~~lG~~V~~AVITVPAYFnd~QRqATkdAa 158 (719)
T PRK13410 80 -LSPESKRVPYTIRRDEVGNIKIKCPRLKREFAPEEISAMILRKLAEEASRYLGEPVTGAVITVPAYFNDSQRQATRDAG 158 (719)
T ss_pred -CCHHHHCCCEEEEECCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf -1256633874789769994799964788147499999999999999999982999775899989999989999999999
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 21122222222102478888603445655079987244114543101023146542013322455213447665536787
Q gi|255764494|r 159 RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT 238 (652)
Q Consensus 159 ~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~ 238 (652)
++|||+|+|||||||||||+||+++..+++|||||||||||||||+++.+|+|+|+++.||++|||+|||++|++||+++
T Consensus 159 ~iAGL~VlRLINEPTAAALAYGldk~~~~~VLVyDLGGGTfDVSIL~i~~GvfeVlAT~GDt~LGG~DFD~~Iv~~l~~e 238 (719)
T PRK13410 159 RIAGLEVLRILNEPTAASLAYGLDRQDNQTILVFDLGGGTFDVSILEVGDGVFEVKATSGDTQLGGNDFDKRIVDWLAEQ 238 (719)
T ss_pred HHCCCCEEEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98599636642608899998454347885799997798727888999609848997605888748778879999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 64201343024478999999999988541155650358630443467887212687311000012342000011001111
Q gi|255764494|r 239 FKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKC 318 (652)
Q Consensus 239 ~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~ 318 (652)
|++++++|++.++++++||+.+||+||+.||++.+++|+++++..+..++++++.+|||++||++|+|+++|+..+|+++
T Consensus 239 f~~k~giDl~~d~~al~RL~~aAEkAK~~LS~~~~t~I~lp~i~~~~dg~~~l~~~ITR~eFE~L~~~L~~Rt~~pv~~a 318 (719)
T PRK13410 239 FLEAEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDINLPFITATEDGPKHLETRLTRSQFEDLCGDLVSRLRRPVKRA 318 (719)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99863766433999999999999999997075765258842332567787126999759999988999999999999999
Q ss_pred CHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCC
Q ss_conf 01013563110146630785305677886541011111113565310111110002234675221000023566532223
Q gi|255764494|r 319 LQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIET 398 (652)
Q Consensus 319 L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~ 398 (652)
|++|++++++|+.|+|||||||||+||++|+++||+++++++|||||||+|||+||++|++++++++|+||+|+|||||+
T Consensus 319 L~dAgl~~~dId~VILVGGSTRIP~Vq~~V~e~FGkep~~~iNPDEaVA~GAAiQA~iLsg~~~d~lllDVtPlSLGiet 398 (719)
T PRK13410 319 LKDAGLSPVQIDEVVLVGGSTRMPMVKQLVRSLIDREPNQNVNPDEVVAVGAAIQAGILAGEVKDILLLDVTPLSLGLET 398 (719)
T ss_pred HHHHCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEE
T ss_conf 99838994141399997882554889999999849997888997177503188864310477565388973156358986
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHH
Q ss_conf 34202466338981102456654567641222110000122222222233453102456767443532000010011001
Q gi|255764494|r 399 LGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGI 478 (652)
Q Consensus 399 ~~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGi 478 (652)
.||.|++||||||+||+++++.|+|+.|||+.+.|+||||||.++.+|+.||+|.|.||||+|+|.|+|+|||+||+|||
T Consensus 399 ~gg~~~~iI~RNt~IP~~~s~~FtT~~DnQt~v~I~V~qGEr~~~~dn~~Lg~F~L~gippap~G~~~IeVtF~id~nGi 478 (719)
T PRK13410 399 IGGVMKKLIPRNTTIPVRRSDIFSTSENNQTLVEIHVLQGEREMASDNKSLGRFKLTGIPPAPRGIPQVQVSFDIDANGI 478 (719)
T ss_pred CCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEECCCCC
T ss_conf 18858887818797675057999977789715899998337853102846758886187989999973999999769987
Q ss_pred HHHHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCH
Q ss_conf 222102344420000000000011245668999999998999899999999999999999999999987----2202998
Q gi|255764494|r 479 VQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLRE----HGDKIAE 554 (652)
Q Consensus 479 l~Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e----~~~klse 554 (652)
|+|+|.|+.||++++|+|+++++||++||++|+++|++++++|++.|+.+++||++|+++|++++.|.+ +++++..
T Consensus 479 l~VsA~d~~tg~~~~i~i~~~~~ls~~ei~~m~~~a~~~~~~D~~~~~~~e~~n~~~~~~~~~~~~l~e~~~~~~~~~~~ 558 (719)
T PRK13410 479 LQVTALDKTTGREQSITIQGASTLSESEVNRMIQDAEKFADQDRERRERVEKRNRAQALIDQAERRLREVTLDFGMQFAR 558 (719)
T ss_pred EEEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 89999966889811599868999899999999999998876649999889877668879999986532333443042565
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999987248987899999999999999999999998403445
Q gi|255764494|r 555 AEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKD 607 (652)
Q Consensus 555 ~ek~~i~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~ 607 (652)
+++..++.++.++++||++++ ...|+.+.+.|++.+..+..+++.+-.+++
T Consensus 559 ~~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~ 609 (719)
T PRK13410 559 SYRRRIESLSRELLDSLEKND--DRGLDRAQADLQDALYELNREVRLQYDDEE 609 (719)
T ss_pred HHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 678999999999999885052--889999999999999999899999877631
No 7
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=0 Score=1213.50 Aligned_cols=602 Identities=52% Similarity=0.819 Sum_probs=574.6
Q ss_pred CC--CEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf 98--1699804866069999989955997568986256279999489989966789863330835110020675498687
Q gi|255764494|r 1 MS--KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFN 78 (652)
Q Consensus 1 Ms--~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~ 78 (652)
|| .+||||||||||+||++++|+++||+|++|+|.|||+|+|.++ +|+||+.|++++.+||+||++++|||||++|+
T Consensus 1 ~~~~~aIGIDlGTtnS~vAv~~~g~~eii~N~~g~r~tPS~V~f~~~-~rlvG~~Ak~~~~~np~nti~~~KRliGr~~~ 79 (657)
T PTZ00009 1 MTFEGAIGIDLGTTYSCVGVWQNERVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPENTVFDAKRLIGRKFD 79 (657)
T ss_pred CCCCCEEEEECCHHCEEEEEEECCEEEEEECCCCCEEECEEEEEECC-CEEECHHHHHHHHHCCCCEEHHHHHHHCCCCC
T ss_conf 98787899985711389999969915999879999661569999189-78970999987776862350576887489887
Q ss_pred CHHHHHHHHCCCEEEEECCCCEEEEEE----CCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHH
Q ss_conf 267876520198699975998279995----7958719999999999999999998388473369853778874025788
Q gi|255764494|r 79 DSTVAKDASLVPFKIVEGKGGDAWIEA----QGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQAT 154 (652)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~ 154 (652)
|+.++.+.++|||+++...++.+.+.+ ..+.|+|+||+||+|++||+.|+.++|.++++||||||+||++.||+|+
T Consensus 80 d~~vq~~~~~~p~~v~~~~~~~~~i~v~~~~~~~~~tpeeisA~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~d~QR~At 159 (657)
T PTZ00009 80 DSVVQSDMKHWPFKVTTGGDDKPVIEVQYRGEKKTFHPEEISSMVLLKMKEIAEAYLGKQVKKAVVTVPAYFNDSQRQAT 159 (657)
T ss_pred CHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH
T ss_conf 47788776339848997699972699996587548849999999999999999997199987099997999998999999
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC--CCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 6344211222222221024788886034456--55079987244114543101023146542013322455213447665
Q gi|255764494|r 155 KDAGRIAGLDVLRIINEPTAAALAYGLDKKD--ARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLV 232 (652)
Q Consensus 155 ~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~--~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~ 232 (652)
++||++|||+|+|||||||||||+||+++.. +++|||||||||||||||+++.+|+|+|+++.||++|||+|||++|+
T Consensus 160 ~~Aa~iAGL~vlrlInEPTAAAlaYgl~k~~~~~~~vlV~DlGgGTfDVSvl~~~~g~~~Vlat~gD~~LGG~dfD~~L~ 239 (657)
T PTZ00009 160 KDAGTIAGLNVMRIINEPTAAAIAYGLDKKGDGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLV 239 (657)
T ss_pred HHHHHHCCCCEEEEECCHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 99999749955788642789999850234678861899998788649977689868838998504778868067799999
Q ss_pred HHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHH
Q ss_conf 536787642013-4302447899999999998854115565035863044346788721268731100001234200001
Q gi|255764494|r 233 EHICDTFKKENG-IDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKT 311 (652)
Q Consensus 233 ~~~~~~~~~~~~-~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~ 311 (652)
+||+++|+++++ +|++.++++++||+.+||++|+.||++++++++++++++ +.|++.+|||++||++|+|+++|+
T Consensus 240 ~~~~~~fk~k~~g~d~~~~~ra~~rL~~aaEkaK~~LS~~~~a~i~ie~l~~----~~d~~~~itR~~FE~l~~~l~~r~ 315 (657)
T PTZ00009 240 EFCVEDFKRKNKGKDLSSNHRALRRLRTACERAKRTLSSSTQATIEIDSLFE----GIDYQATISRARFEELCGDLFRST 315 (657)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC----CCCCEEEEHHHHHHHHHHHHHHHH
T ss_conf 9999999875168786649999999999999999971458743788214323----446335671999999999999989
Q ss_pred HHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHCCCCCCC----CCCCHHE
Q ss_conf 10011110101356311014663078530567788654101-111111356531011111000223467----5221000
Q gi|255764494|r 312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFF-NKSPSKGVNPDEVVAMGAAIQAGVLQG----DVKDLLL 386 (652)
Q Consensus 312 ~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~f-g~~~~~~~npdeaVa~GAA~~a~~ls~----~~~~~~~ 386 (652)
..+|+++|++|++++++|+.|+|||||||||+||+.|+++| |+++++++|||||||+|||+||++|++ +++++++
T Consensus 316 ~~~i~~aL~~a~l~~~dId~ViLVGGsTRiP~Vq~~l~~~f~gk~~~~~iNpDEaVA~GAAiqaa~Lsg~~~~~v~~~~l 395 (657)
T PTZ00009 316 LQPVEKVLQDAKMDKRSVHDVVLVGGSTRIPKVQSLISDFFNGKELNKSINPDEAVAYGAAVQAAILTGGQSKQTQGLLL 395 (657)
T ss_pred HHHHHHHHHHHCCCHHHEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 99999999973799525149998088146768999999981898888897831466654899999871896554123689
Q ss_pred ECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02356653222334202466338981102456654567641222110000122222222233453102456767443532
Q gi|255764494|r 387 LDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQ 466 (652)
Q Consensus 387 ~dv~p~slgie~~~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~ 466 (652)
.||+|+|||||+.||.|.+|||||++||++++++|+|+.|||+.+.|+||||||.++++|++||+|+|.||||+|+|.|+
T Consensus 396 ~Dv~PlslGie~~gg~~~~ii~rnt~iP~~k~~~ftt~~d~q~~v~i~v~qGe~~~~~dn~~lg~f~l~gipp~p~g~~~ 475 (657)
T PTZ00009 396 LDVAPLSLGLETAGGVMTALIKRNTTIPTKKSQIFTTYADNQPGVHIQVFEGERAMTKDNHLLGKFHLSGIPPAPRGVPQ 475 (657)
T ss_pred EECCCEEEEEEECCCCEEEEEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCEECEEECCCCCCCCCCCCC
T ss_conf 96164047888659822453117852685540898715779861599953577665877866441554789978899980
Q ss_pred CCHHHHCCCCHHHHHHCCCCCCCCHHCHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00001001100122210234442000000000001-12456689999999989998999999999999999999999999
Q gi|255764494|r 467 IEVAFDIDANGIVQVSALDKGTGKAQQISIQASGG-LSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSL 545 (652)
Q Consensus 467 I~vtf~id~nGil~Vsa~~~~t~~~~~i~i~~~~~-Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l 545 (652)
|+|+|++|.||||+|+|.++.||++++++|+++.+ ||+++|++|++++++|+++|++.|+++++||+||+|||++|++|
T Consensus 476 I~V~f~id~nGil~Vsa~dk~tgk~~~i~i~~~~g~Ls~~ei~~~~~~~~~~~~~Dk~~~e~~eakN~lE~yiy~~r~kl 555 (657)
T PTZ00009 476 IEVTFDIDANGILNVSAEEKSTGKRNHITITNDKGRLSKDEIERMVNDAEKYKAEDEAQRERVEAKNGLENYAYSMKNTL 555 (657)
T ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 69998606888456566506878776358836999899999999999999899878999999998878999999998663
Q ss_pred HH--HHHCCCHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 87--22029989999999999999998724-8987899999999999999999999998403445
Q gi|255764494|r 546 RE--HGDKIAEAEQKSIRESIDALRTLLND-ADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKD 607 (652)
Q Consensus 546 ~e--~~~klse~ek~~i~~~l~e~e~wl~~-~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~ 607 (652)
++ +.+++++++++.|..+++++++||++ .++..+.|+.++++|+.+.+||..++|++.+.+.
T Consensus 556 ~d~~~~~~~~~~ek~~i~~~l~e~~~WL~~g~da~k~~y~~kl~eL~~~~~Pi~~~~y~~~~~~~ 620 (657)
T PTZ00009 556 SDPNVKGKLDDAEKDTANKAIDEALEWLESNQEASKEEYEHKQKELESVCNPIMTKMYQSMGGAA 620 (657)
T ss_pred CCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 56001101899999999999999999975599755899999999999877499999864246888
No 8
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=0 Score=1218.49 Aligned_cols=591 Identities=41% Similarity=0.688 Sum_probs=568.2
Q ss_pred EEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHH
Q ss_conf 69980486606999998995599756898625627999948998996678986333083511002067549868726787
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTVA 83 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~ 83 (652)
+||||||||||+||++++|.|+||+|.+|+|+|||+|+|.++++++||+.|++++..||.|||+++||||||+|+| ++
T Consensus 21 aIGIDLGTTnS~VA~~~~g~~~iI~n~~G~r~tPSvV~f~~~g~~lVG~~Ak~~~~~nP~nTi~~~KRlmGr~~~d--v~ 98 (621)
T PRK05183 21 AVGIDLGTTNSLVAAVRSGVAETLPDEQGRVLLPSVVRYLEDGGVEVGYEARAAAAQDPKNTIVSVKRFMGRSLAD--IQ 98 (621)
T ss_pred EEEEECCHHHEEEEEEECCEEEEEECCCCCEEECEEEEEECCCCEEECHHHHHHHHHCCHHEEHHHHHHCCCCCHH--HH
T ss_conf 8999978234799999999889958799796704799997899889549999866758310517869762998077--77
Q ss_pred HHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 65201986999759982799957958719999999999999999998388473369853778874025788634421122
Q gi|255764494|r 84 KDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGL 163 (652)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl 163 (652)
...+++||+++..+++.+.+...++.++|+||+|++|++||+.||.++|.+|++|||||||||++.||+||++||++|||
T Consensus 99 ~~~~~~py~i~~~~~g~~~i~~~~~~~sP~EISA~IL~kLK~~AE~~lg~~V~~AVITVPAyFnd~QRqATkdAa~iAGL 178 (621)
T PRK05183 99 QRYPHLPYQFVASENGMPMIETAQGVKSPVEVSAEILKALRARAEDTLGGELVGAVITVPAYFDDAQRQATKDAARLAGL 178 (621)
T ss_pred HHHHCCCEEEEECCCCCEEEEECCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 66315975899779995799957872879999999999999999997299857689998999999999999999997498
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 22222210247888860344565507998724411454310102314654201332245521344766553678764201
Q gi|255764494|r 164 DVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKEN 243 (652)
Q Consensus 164 ~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~ 243 (652)
+|+|||||||||||+||+++..++++||||||||||||||+++.+|+|+|+++.||++|||+|||++|++||++++
T Consensus 179 ~VlRlINEPTAAAlAYGld~~~e~~vlVyDLGGGTfDVSIl~~~~gvfeVlAt~GD~~LGG~DfD~~i~~~l~~~~---- 254 (621)
T PRK05183 179 NVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWLLEQA---- 254 (621)
T ss_pred CEEEEECHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH----
T ss_conf 4587416289999980266688757999987886589999997488789997059887580889999999999874----
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCC
Q ss_conf 34302447899999999998854115565035863044346788721268731100001234200001100111101013
Q gi|255764494|r 244 GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAG 323 (652)
Q Consensus 244 ~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~ 323 (652)
+.+.+.+++++++|+.+||++|+.||.+.++.|+++. .+.++..+|||++||++|+|+++|+..+|+++|++|+
T Consensus 255 ~~~~~~d~~~~~~L~~~aE~aK~~LS~~~~~~i~~~~------~~~~~~~~ltR~~FE~l~~~L~~rt~~~v~~aL~dA~ 328 (621)
T PRK05183 255 GLAPRLDPEDQRLLLDAARAAKEALSDADSVEVSVAL------WQGELKLTITREQFEALIAPLVKRTLLACRRALRDAG 328 (621)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC------CCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 3365799999999999999999963678638999605------8953799974999999999999999999999998713
Q ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC--CCHHEECCCCCCCCCCCCCC
Q ss_conf 5631101466307853056778865410111111135653101111100022346752--21000023566532223342
Q gi|255764494|r 324 LSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDV--KDLLLLDVTPLSLGIETLGG 401 (652)
Q Consensus 324 ~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~--~~~~~~dv~p~slgie~~~~ 401 (652)
+++++||.|+|||||||||.||+.|+++||+++..++|||||||+|||+||++|+++. .+++++||+|+|||||+.||
T Consensus 329 l~~~dId~ViLVGGSTRiP~Vq~~v~~~Fgk~~~~~inPDeaVA~GAAiQa~iL~g~~~~~~~lllDV~PlSLGIEt~gG 408 (621)
T PRK05183 329 VEADEVLEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVALGAAIQADILAGNKPDSDMLLLDVIPLSLGLETMGG 408 (621)
T ss_pred CCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEECCC
T ss_conf 68300209999288545668999999985989666899016888769999998628976670699961254135686297
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHH
Q ss_conf 02466338981102456654567641222110000122222222233453102456767443532000010011001222
Q gi|255764494|r 402 VFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQV 481 (652)
Q Consensus 402 ~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGil~V 481 (652)
.|++||||||+||++++++|+|+.|||+.+.|+||||||.+++||+.||+|.|.||||+|+|.|+|+|||++|+||||+|
T Consensus 409 ~~~~iI~RNt~IP~~~~~~FtT~~DnQt~v~I~V~qGEr~~~~dN~~Lg~f~L~gIppap~G~~~I~VtF~iD~nGiL~V 488 (621)
T PRK05183 409 LVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVSDCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSV 488 (621)
T ss_pred EEEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEECCHHHHCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEE
T ss_conf 69998727983575103799956889607999999735544524727717997798999899986899999879967999
Q ss_pred HCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 10234442000000000001124566899999999899989999999999999999999999998722029989999999
Q gi|255764494|r 482 SALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIR 561 (652)
Q Consensus 482 sa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~~i~ 561 (652)
+|.|+.||++++|+|+++++||++||++|++++++++++|+..|+++|+||++|+++|.+++.|.+++++++++++..++
T Consensus 489 sA~d~~tg~~~~i~i~~~~gLs~~ei~~m~~~a~~~~~~D~~~r~~~e~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~i~ 568 (621)
T PRK05183 489 TAMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSNAEEDMKARALAEQQVEAERVLEALQAALAADGDLLSADERAAID 568 (621)
T ss_pred EEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99985679713599847999799999999999998799889869989989889999999999999554409999999999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999872489878999999999999999999999984034455
Q gi|255764494|r 562 ESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDA 608 (652)
Q Consensus 562 ~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~~ 608 (652)
..+.++++++.++ |...|+.+++.|+++.+++..++|.+......
T Consensus 569 ~~~~~l~~~~~~~--d~~~i~~~~~~l~~~~~~~a~~~m~~~~~~al 613 (621)
T PRK05183 569 AAMAALRALAQGD--DADAIEAAIKALDKATQEFAARRMDRSIRRAL 613 (621)
T ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999987269--99999999999999999999999999999984
No 9
>KOG0100 consensus
Probab=100.00 E-value=0 Score=1188.35 Aligned_cols=599 Identities=55% Similarity=0.871 Sum_probs=574.2
Q ss_pred CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf 98169980486606999998995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS 80 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (652)
|.+|||||||||||||+++++|+++||.|.+|+|.|||+|+|+++ +|++|+.|++|+..||.|||++.||||||.|+|+
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~ 113 (663)
T KOG0100 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK 113 (663)
T ss_pred CCEEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCCEEEECCC-HHHHHHHHHCCCCCCCCCCEECHHHHHCCCCCCH
T ss_conf 443899832784356799837758998647788256543543561-2435267645154686344122677737545774
Q ss_pred HHHHHHHCCCEEEEECCCCE-EEEEEC---CEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHH
Q ss_conf 78765201986999759982-799957---95871999999999999999999838847336985377887402578863
Q gi|255764494|r 81 TVAKDASLVPFKIVEGKGGD-AWIEAQ---GKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKD 156 (652)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~ 156 (652)
.+|++.++|||++++..+.. +.+.++ .+.|+|||++||+|.++|++||.|||.+|+++|+||||||+++||||+++
T Consensus 114 ~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKD 193 (663)
T KOG0100 114 SVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD 193 (663)
T ss_pred HHHHHHHCCCEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHCCHHHHHHHCC
T ss_conf 36544201764787479981079971688532128899799999988989999838722204896210015687764224
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCCCCC-CCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 44211222222221024788886034456-55079987244114543101023146542013322455213447665536
Q gi|255764494|r 157 AGRIAGLDVLRIINEPTAAALAYGLDKKD-ARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHI 235 (652)
Q Consensus 157 Aa~~AGl~v~~li~EptAAal~Y~~~~~~-~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~ 235 (652)
|+.||||+|+|+||||||||++||+++++ ++++||||+||||||||++.+.+|+|+|++|.||+||||.|||+++++||
T Consensus 194 AGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~f 273 (663)
T KOG0100 194 AGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYF 273 (663)
T ss_pred CCEECCCEEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 55002634788606842878872446567841079997589657779999707458999637875447540678999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCC
Q ss_conf 78764201343024478999999999988541155650358630443467887212687311000012342000011001
Q gi|255764494|r 236 CDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPC 315 (652)
Q Consensus 236 ~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i 315 (652)
++.|+++++.|++.|.+|+++|+++||+||..||++.++.|+|+|+. +|.||+.++||..||++..++|.+++.|+
T Consensus 274 iklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~f----dG~DfSEtLtRAkFEElNmDLFr~TlkPv 349 (663)
T KOG0100 274 IKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLF----DGVDFSETLTRAKFEELNMDLFRKTLKPV 349 (663)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99986650776412368999999999998765312430377642003----66433305566678875069888756789
Q ss_pred CCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHCCCCCCC--CCCCHHEECCCCC
Q ss_conf 1110101356311014663078530567788654101-111111356531011111000223467--5221000023566
Q gi|255764494|r 316 KKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFF-NKSPSKGVNPDEVVAMGAAIQAGVLQG--DVKDLLLLDVTPL 392 (652)
Q Consensus 316 ~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~f-g~~~~~~~npdeaVa~GAA~~a~~ls~--~~~~~~~~dv~p~ 392 (652)
.++|++++++++|||.++|||||+|||+||++++++| |+++++.+|||||||+|||+||++||| +..+++++||+|+
T Consensus 350 ~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~pL 429 (663)
T KOG0100 350 QKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNPL 429 (663)
T ss_pred HHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
T ss_conf 99876128661457538995486568269999999828888667988678777656665320125667685799960451
Q ss_pred CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 53222334202466338981102456654567641222110000122222222233453102456767443532000010
Q gi|255764494|r 393 SLGIETLGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFD 472 (652)
Q Consensus 393 slgie~~~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~ 472 (652)
+||||+.||+|+++|||||.||++|++.|+|+.|||+.+.|+||+|||++.+||+.||.|+|+||||+|+|.|+|+|||+
T Consensus 430 tlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFe 509 (663)
T KOG0100 430 TLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFE 509 (663)
T ss_pred CCEEEEECCEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 10036414344202467762675302011210048741799985065664444311033323679988889862799999
Q ss_pred CCCCHHHHHHCCCCCCCCHHCHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q ss_conf 01100122210234442000000000-0011245668999999998999899999999999999999999999987---2
Q gi|255764494|r 473 IDANGIVQVSALDKGTGKAQQISIQA-SGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLRE---H 548 (652)
Q Consensus 473 id~nGil~Vsa~~~~t~~~~~i~i~~-~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e---~ 548 (652)
+|+||||+|+|.|++||+.++|+|++ .++||.++|++|+++|++++++|+..++++++||+||+|.|.++.++.+ .
T Consensus 510 vDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekL 589 (663)
T KOG0100 510 VDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKL 589 (663)
T ss_pred ECCCCEEEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 72674589876606778744178866778779899999999899876666889988776778999998765103766675
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 20299899999999999999987248-987899999999999999999999998403
Q gi|255764494|r 549 GDKIAEAEQKSIRESIDALRTLLNDA-DPDESKIKEATQKLMEVSMNLGKAIYEAQA 604 (652)
Q Consensus 549 ~~klse~ek~~i~~~l~e~e~wl~~~-~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~ 604 (652)
+.|+++++|+.++.++++.-+||+++ +++..+++++.++|+.+++|+..++|....
T Consensus 590 g~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag 646 (663)
T KOG0100 590 GGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAG 646 (663)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 565886678999999999999876166656778999998899998899999851147
No 10
>pfam00012 HSP70 Hsp70 protein. Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region.
Probab=100.00 E-value=0 Score=1114.59 Aligned_cols=590 Identities=64% Similarity=0.973 Sum_probs=564.5
Q ss_pred EEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHH
Q ss_conf 69980486606999998995599756898625627999948998996678986333083511002067549868726787
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTVA 83 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~ 83 (652)
|||||||||||+||++++|.|+||+|+.|+|.|||+|+|.++ +|+||+.|+.++.+||.+|++++|||||+.|+|+.++
T Consensus 1 ViGIDlGTtns~vAv~~~g~~~iv~n~~~~r~tPS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~v~ 79 (598)
T pfam00012 1 VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPK-ERLVGQAAKRQAVTNPKNTVFSVKRLIGRKFSDPVVQ 79 (598)
T ss_pred CEEEECCHHCEEEEEEECCEEEEEECCCCCEECCEEEEEECC-CEEECHHHHHHHHHCCCCEEHHHHHHCCCCCCCHHHH
T ss_conf 989984601489999989987999879998321779999699-8897099997567684457715288609988757788
Q ss_pred HHHHCCCEEEEECCCCEEEEEE--CCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 6520198699975998279995--79587199999999999999999983884733698537788740257886344211
Q gi|255764494|r 84 KDASLVPFKIVEGKGGDAWIEA--QGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIA 161 (652)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~A 161 (652)
.+.+++||+++.++++.+.+.+ .++.|+|+||+||+|++||+.|+.++|.++.+||||||+||++.||+|+++||++|
T Consensus 80 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~speei~a~iL~~lk~~ae~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~A 159 (598)
T pfam00012 80 RDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQKLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGRIA 159 (598)
T ss_pred HHHHCCCEEEEECCCCCEEEEEECCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 76423983799879996689993399799699999999999999999983898653999989978989999999999976
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCC-CCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 22222222102478888603445-65507998724411454310102314654201332245521344766553678764
Q gi|255764494|r 162 GLDVLRIINEPTAAALAYGLDKK-DARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK 240 (652)
Q Consensus 162 Gl~v~~li~EptAAal~Y~~~~~-~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~ 240 (652)
||+|++|||||||||++||+++. .++++||||||||||||||+++.+|.++|+++.||.+|||+|||.+|++||+++|+
T Consensus 160 Gl~vl~linEptAAAlaYg~~~~~~~~~vlV~DlGggt~dvSv~~~~~g~~~Vla~~gd~~LGG~dfD~~l~~~l~~~f~ 239 (598)
T pfam00012 160 GLNVLRIINEPTAAALAYGLDKKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEFK 239 (598)
T ss_pred CCCEEEEECCHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99646653658899999714357896089999889981777777612998999983278875867888999999999874
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 20134302447899999999998854115565-03586304434678872126873110000123420000110011110
Q gi|255764494|r 241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTS-QTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCL 319 (652)
Q Consensus 241 ~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~-~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L 319 (652)
++|++|++.+++++.||+.+||++|+.||++. ++.+.+++++.+ |.|++.+|||++||++|+|+++|+..+|+++|
T Consensus 240 ~k~~~d~~~~~~a~~~L~~~aekaK~~LS~~~t~~~~~~~~~~~~---~~d~~~~itR~eFE~l~~~l~~r~~~~i~~~L 316 (598)
T pfam00012 240 KKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMAD---GKDVSGTLTRAKFEELCADLFERTLEPVEKAL 316 (598)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC---CCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 641677332999999999999999997266663366788871478---94799997799999999999999999998789
Q ss_pred HHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC--CCCCHHEECCCCCCCCCC
Q ss_conf 101356311014663078530567788654101111111356531011111000223467--522100002356653222
Q gi|255764494|r 320 QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG--DVKDLLLLDVTPLSLGIE 397 (652)
Q Consensus 320 ~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~--~~~~~~~~dv~p~slgie 397 (652)
+++++++++|+.|+|||||||||+||+.|+++||+++.+++|||||||+|||+||++|++ +++++.+.|++|++|||+
T Consensus 317 ~~a~l~~~dId~ViLvGGssRiP~Vq~~l~~~fg~~~~~~inpdeaVa~GAA~~aa~ls~~~~v~~~~~~Dv~p~slgi~ 396 (598)
T pfam00012 317 KDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKTVNPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIE 396 (598)
T ss_pred HHHCCCHHHEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEE
T ss_conf 87289954512578618865676899999998689966686853142330899998757876456528998547358999
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCH
Q ss_conf 33420246633898110245665456764122211000012222222223345310245676744353200001001100
Q gi|255764494|r 398 TLGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANG 477 (652)
Q Consensus 398 ~~~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nG 477 (652)
+.+|.+.+||+||+++|+++++.|+|..|+|+.+.|+|||||+....+|..||+|+|.||||+|+|.|+|+|+|++|.||
T Consensus 397 ~~~~~~~~ii~rnt~iP~~~~~~f~t~~d~q~~~~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~G 476 (598)
T pfam00012 397 TLGGVMTKLIPRNTTIPTKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANG 476 (598)
T ss_pred ECCCCCCCCCCCCCEECCCCCCCCEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCC
T ss_conf 81880100167785426777755012267984489999955865456787787999947885889986599999985988
Q ss_pred HHHHHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 12221023444200000000000112456689999999989998999999999999999999999999872202998999
Q gi|255764494|r 478 IVQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQ 557 (652)
Q Consensus 478 il~Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek 557 (652)
+|+|++.++.|++++++++++..+++++++++|+++++++.++|+..+++.++||+||++||.+|+.|++..++++++++
T Consensus 477 il~v~a~~~~t~~~~~i~~~~~~~l~~~e~~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~~~ 556 (598)
T pfam00012 477 ILTVSAKDKGTGKEQKITITNSSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADK 556 (598)
T ss_pred CEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 57999842678954568957999989999999999999889999999999999999999999999998753524799999
Q ss_pred HHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999987248--987899999999999999999999998
Q gi|255764494|r 558 KSIRESIDALRTLLNDA--DPDESKIKEATQKLMEVSMNLGKAIYE 601 (652)
Q Consensus 558 ~~i~~~l~e~e~wl~~~--~~d~~~i~~~~~~L~e~~~~i~~~~~~ 601 (652)
++ ++++++|||++ +.+..++++++++|+++..|+.+|+|+
T Consensus 557 ~~----i~~~~~Wl~~~~~~~~~~~~~~kl~eL~~~~~pi~~R~~~ 598 (598)
T pfam00012 557 KK----VEEAIEWLKEELEGEDKEEIEAKTEELQKVVQPIGERMYQ 598 (598)
T ss_pred HH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99----9999999986036899999999999999999999998629
No 11
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=0 Score=1117.40 Aligned_cols=566 Identities=35% Similarity=0.561 Sum_probs=530.5
Q ss_pred CEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHH
Q ss_conf 16998048660699999899559975689862562799994899899667898633308351100206754986872678
Q gi|255764494|r 3 KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTV 82 (652)
Q Consensus 3 ~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 82 (652)
-+||||||||||+||++++|+|+||+|++|+|+|||+|+|.++ .+++|. .+|++++|||||+.|+++..
T Consensus 20 ~aIGIDLGTTnS~VAv~~~g~~~II~N~~G~r~TPSvVaf~~~-~~~VG~----------~~ti~~vKRliGr~~~d~~~ 88 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTNE-NFTIGN----------NKGLRSIKRLFGKTLKEILN 88 (595)
T ss_pred EEEEEECCHHHEEEEEEECCEEEEEECCCCCCEECEEEEEECC-CEEECC----------CCEEEEEHHHCCCCHHHHCC
T ss_conf 8999956801017899989989999769979500459999189-649886----------54044108663987566245
Q ss_pred HHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 76520198699975998279995795871999999999999999999838847336985377887402578863442112
Q gi|255764494|r 83 AKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAG 162 (652)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AG 162 (652)
+......++.+...+++.+.+...++.|+|+||+||+|++||+.||.++|.+|++|||||||||++.||+||++||++||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~sPeEIsA~IL~kLK~~AE~~lg~~V~~AVITVPAYFnd~QRqATk~Aa~iAG 168 (595)
T PRK01433 89 TPALFSLVKDYLDVNSSELKLNFANKQIRIPEIAAEVFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAG 168 (595)
T ss_pred CCCCCCCCCEEEECCCCEEEEECCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 50230115443405895589972885996999899999999999999858987459999687578899999999999849
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 22222221024788886034456550799872441145431010231465420133224552134476655367876420
Q gi|255764494|r 163 LDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKE 242 (652)
Q Consensus 163 l~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~ 242 (652)
|+|+|||||||||||+||+++...+++||||||||||||||+++.+|+|+|+++.||++|||+|||++|++|++++|...
T Consensus 169 L~VlRlInEPTAAAlAYGl~k~~~~~ilVyDLGGGTfDVSil~~~~g~feVlat~GD~~LGG~DfD~~i~~~l~~~f~~~ 248 (595)
T PRK01433 169 FEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDLP 248 (595)
T ss_pred CCEEEECCHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 91587336889999981876688865999988897189999995188089997037887675568999999999872877
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHC
Q ss_conf 13430244789999999999885411556503586304434678872126873110000123420000110011110101
Q gi|255764494|r 243 NGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDA 322 (652)
Q Consensus 243 ~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a 322 (652)
++.+ .++.|+++|+.||.+.... ...++|||++||++|.|+++|++.+|+++|++|
T Consensus 249 ~~~~----------~~~~ae~aK~~Ls~~~~~~--------------~~~~~ltR~~Fe~l~~~L~~r~~~~v~~~L~~a 304 (595)
T PRK01433 249 NSID----------TLQLAKKAKETLTYKDSFN--------------NDNISINKQTLEQLILPLVERTINIAQECLEQA 304 (595)
T ss_pred CCHH----------HHHHHHHHHHHHCCCCCCC--------------CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7788----------9999999999823354345--------------774187699999999999999999999999976
Q ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCCCCCE
Q ss_conf 35631101466307853056778865410111111135653101111100022346752210000235665322233420
Q gi|255764494|r 323 GLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGV 402 (652)
Q Consensus 323 ~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~~~~~ 402 (652)
+ +.+||.|+|||||||||.||+.|+++||+++.+++|||||||+|||+||++|++..++++++||+|+|||||+.||.
T Consensus 305 ~--~~dId~ViLVGGsTRiP~Vq~~l~~~Fg~~~~~~inPDEaVA~GAAiqa~~L~~~~~~~~llDV~PlSLGiEt~gg~ 382 (595)
T PRK01433 305 G--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMELYGGI 382 (595)
T ss_pred C--CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCE
T ss_conf 9--35355489967855458999999998589977897847899998999877643776653999951763689974981
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHH
Q ss_conf 24663389811024566545676412221100001222222222334531024567674435320000100110012221
Q gi|255764494|r 403 FTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQVS 482 (652)
Q Consensus 403 ~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGil~Vs 482 (652)
|++||||||+||+++++.|+|+.|||+.+.|+||||||.++++|+.||+|.|.||||+|+|.|+|+|||.+|+||||+|+
T Consensus 383 ~~~iI~RNt~iP~~~~~~FtT~~D~Qt~v~I~V~qGEr~~~~dN~~Lg~f~L~gipp~p~G~~~I~VtF~iD~nGil~Vs 462 (595)
T PRK01433 383 VEKIIMRNTPIPIAVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVS 462 (595)
T ss_pred EEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCHHHHCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEE
T ss_conf 67762289815752323899746798068999996351223137165259987989876899858999998489719999
Q ss_pred CCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 02344420000000000011245668999999998999899999999999999999999999987220299899999999
Q gi|255764494|r 483 ALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRE 562 (652)
Q Consensus 483 a~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~~i~~ 562 (652)
|.|+.||++++|+|+++++||++||++|++++++++++|+..|+..|+||++|+++|.+++.|.+++++++++++..++.
T Consensus 463 A~d~~tg~~~~i~i~~~~gls~~ei~~m~~~a~~~~~~d~~~r~~~e~~~~~e~~~~~~~~~l~~~~~~l~~~~~~~i~~ 542 (595)
T PRK01433 463 AYEKISNTSHFIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAIIEAEALIFNIERAIAELTTLLSESEISIINS 542 (595)
T ss_pred EEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99857897788998279997999999999999998999999999999999999999999999997455099999999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999987248987899999999999999999999998403445
Q gi|255764494|r 563 SIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKD 607 (652)
Q Consensus 563 ~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~ 607 (652)
.++++++|+..+ |...++..+++|.+..+++.++++...-...
T Consensus 543 ~~~~l~~~~~~~--d~~~i~~~~~~l~~~~~~~~~~~m~~~i~~~ 585 (595)
T PRK01433 543 LLDNIKEAIKAR--DRILINNSIKEFKSKIKKSMDTKLNIIINDL 585 (595)
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 999999998667--8999999999999988999998768999999
No 12
>TIGR01991 HscA Fe-S protein assembly chaperone HscA; InterPro: IPR010236 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents the HscA chaperone protein from the SUF system. HscA (or Hsc66) is a specialised bacterial Hsp70-class molecular chaperone that participates in the assembly of iron-sulphur cluster proteins. HscA resembles DnaK, but belongs to a separate clade. HscA interacts with IscU, which is believed to serve as a template for Fe-S cluster formation. The HscA-IscU interaction is facilitated by the J-type co-chaperone protein HscB (or Hsc20), which binds to both HscA and IscU, bringing them into contact with each other. HscA recognises a conserved LPPVK sequence motif at positions 99-103 of IscU .; GO: 0005524 ATP binding, 0016887 ATPase activity, 0051082 unfolded protein binding, 0016226 iron-sulfur cluster assembly.
Probab=100.00 E-value=0 Score=1105.22 Aligned_cols=596 Identities=41% Similarity=0.683 Sum_probs=567.2
Q ss_pred CCCEEEEECCCCEEEEEEEEC-CEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 981699804866069999989-9559975689862562799994899899667898633308351100206754986872
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDG-KNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFND 79 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~-~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 79 (652)
|--++|||||||||.||.++. |.++.+|+.+|...+||+|.|..+|-..||..|+..+..+|.|||.+.||||||.+.|
T Consensus 22 ~rla~GIDLGTTnSLVA~vrseg~a~~lpd~eGr~~lPSvV~Y~~~gG~~VG~~Ar~~a~~dp~nTv~S~KRlmGR~L~D 101 (628)
T TIGR01991 22 MRLAVGIDLGTTNSLVAAVRSEGKAECLPDAEGRLLLPSVVRYLADGGVEVGKAAREAAASDPLNTVISVKRLMGRGLED 101 (628)
T ss_pred CCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCEECCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH
T ss_conf 53776211453210102330475988776768676546225761468802668999997527700345626651576576
Q ss_pred HHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 67876520198699975998279995795871999999999999999999838847336985377887402578863442
Q gi|255764494|r 80 STVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGR 159 (652)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~ 159 (652)
++...+++||++..++++.+.+...-...+|.||+|.||++||..||..||....++||||||||+|+|||||+|||+
T Consensus 102 --v~q~~~~lPYrf~~~e~g~~~~~T~~G~~~PVeVSA~IL~~L~~rAe~~LgG~L~G~VITVPAYFDDAQRQaTKDAaR 179 (628)
T TIGR01991 102 --VQQEGKRLPYRFEAGESGMVEIETAQGLKSPVEVSAEILKELKARAEEALGGELVGVVITVPAYFDDAQRQATKDAAR 179 (628)
T ss_pred --HCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf --525657787000158898547733567526313437899999998866305540116897067554022120157887
Q ss_pred HCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11222222221024788886034456550799872441145431010231465420133224552134476655367876
Q gi|255764494|r 160 IAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTF 239 (652)
Q Consensus 160 ~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~ 239 (652)
+|||+|+||+|||||||++||+++..++.+.|||+|||||||||+++++|+|+|++|+||+-|||+|||++|++|+.++
T Consensus 180 LAGL~VLRLlNEPTAAA~AYGLd~g~EG~~avYDLGGGTFDiSiL~L~kGvFeV~aTGGdsALGGDDFDH~l~~~~~eq- 258 (628)
T TIGR01991 180 LAGLNVLRLLNEPTAAAIAYGLDKGKEGLVAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHALADLLLEQ- 258 (628)
T ss_pred HHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH-
T ss_conf 6235777641614799998311278876499983788710355643403203653047785667763778999999986-
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 42013430244789999999999885411556503586304434678872126873110000123420000110011110
Q gi|255764494|r 240 KKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCL 319 (652)
Q Consensus 240 ~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L 319 (652)
.|+.-..|.+..+.|+..+.-||+.||...++.|.+- ..+|.-+..+|+|++|++++++|+.|+..+|.+||
T Consensus 259 ---~G~~~~~~~~~q~~lL~~a~aAKe~Ltd~~~v~v~~~-----~~~g~aidt~lSra~f~~li~~LV~rtl~~crrAl 330 (628)
T TIGR01991 259 ---AGLSQDLDEEQQRQLLSLARAAKEALTDAESVRVAVG-----DWDGEAIDTELSRAEFEELIEPLVKRTLLPCRRAL 330 (628)
T ss_pred ---CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---5897677836789999999999864486334688885-----15770201565289998899999985216788888
Q ss_pred HHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC--CCHHEECCCCCCCCCC
Q ss_conf 10135631101466307853056778865410111111135653101111100022346752--2100002356653222
Q gi|255764494|r 320 QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDV--KDLLLLDVTPLSLGIE 397 (652)
Q Consensus 320 ~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~--~~~~~~dv~p~slgie 397 (652)
+|||+.+++|..|+|||||||+|.||+.+.++||++|..++|||++||+||||||.+|.|+. .+++|.||+|+|||+|
T Consensus 331 kDaGV~~~e~~~VvmVGGSTRvp~Vr~~VaelFg~~PL~~ldPD~VVAlGAAiQAd~LaGNk~~~elLLLDV~PLSLGlE 410 (628)
T TIGR01991 331 KDAGVEKEEVKGVVMVGGSTRVPKVREAVAELFGREPLTDLDPDKVVALGAAIQADVLAGNKRDEELLLLDVIPLSLGLE 410 (628)
T ss_pred HHCCCCHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCHHCCHH
T ss_conf 75278832532657862654616799999886377878888751424655899875532688886400110121110023
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCH
Q ss_conf 33420246633898110245665456764122211000012222222223345310245676744353200001001100
Q gi|255764494|r 398 TLGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANG 477 (652)
Q Consensus 398 ~~~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nG 477 (652)
|+||.+++||||||++|+.|-+.|||++|+||.+.|+|.||||+++.||++|.+|.|-||||++.|-++|.|||+||++|
T Consensus 411 TmGGL~EKiIPRN~tiP~ARAQ~FTTFKDgQTAM~IhV~QGERELv~dcRSLArF~LRGIPpm~AGaA~IRVTfQvDADG 490 (628)
T TIGR01991 411 TMGGLMEKIIPRNSTIPVARAQDFTTFKDGQTAMVIHVVQGERELVADCRSLARFELRGIPPMVAGAARIRVTFQVDADG 490 (628)
T ss_pred HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHCCHHHHHCCCCCCCCCCCCCEEEEEEEECCCC
T ss_conf 20673566527862998512665545455852668876513146675162144230378984325884476787750552
Q ss_pred HHHHHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHH
Q ss_conf 1222102344420000000000011245668999999998999899999999999999999999999987220-299899
Q gi|255764494|r 478 IVQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGD-KIAEAE 556 (652)
Q Consensus 478 il~Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~-klse~e 556 (652)
+|+|||.|++||.+++|.+|++|||++.+|++|++|+..++++|+..|.+.|++-++++++..+...|....+ .++++|
T Consensus 491 LL~VsA~E~stGV~a~i~VKPsYGL~D~eI~~MlkDs~s~a~~D~~AR~l~E~~VEa~r~l~a~~aAL~~D~~rLL~~~E 570 (628)
T TIGR01991 491 LLSVSAEEKSTGVEASIEVKPSYGLTDAEIAQMLKDSLSYAEEDMAARALAEAKVEAERLLEALDAALALDSDRLLDEEE 570 (628)
T ss_pred CCCCEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 34403011046723688883576888689999999887657877999865355778999999999999851885116888
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999998724898789999999999999999999999840344556
Q gi|255764494|r 557 QKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAA 609 (652)
Q Consensus 557 k~~i~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~~~ 609 (652)
+..|.+.++.+.+.+.+.+ .+.|+..+++|.+....|..|.|.+.-+....
T Consensus 571 ~q~I~~~~~~L~~~a~g~d--~~aI~~~i~~l~~~T~~FAarRMd~~v~~aL~ 621 (628)
T TIGR01991 571 RQAIKAAVADLQGVAKGSD--AEAIEQAIKKLDKVTDAFAARRMDRSVRRALT 621 (628)
T ss_pred HHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999998635883--78999999998775389999874057898837
No 13
>KOG0102 consensus
Probab=100.00 E-value=0 Score=1016.54 Aligned_cols=606 Identities=67% Similarity=1.018 Sum_probs=590.3
Q ss_pred CEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHH
Q ss_conf 16998048660699999899559975689862562799994899899667898633308351100206754986872678
Q gi|255764494|r 3 KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTV 82 (652)
Q Consensus 3 ~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 82 (652)
+|||||+|||||++|++.++.+.++.|.+|.|+|||+|+|+.++++++|..|++|+..||.|||+..||||||.|+|+++
T Consensus 28 ~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ev 107 (640)
T KOG0102 28 KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEV 107 (640)
T ss_pred CEEEEEEECCCEEEEEEECCCCEEEECCCCCCCCCCEEEEECCCCEEECCHHHHHHCCCCCCEEEEEHHHHHHHCCCHHH
T ss_conf 52567541343247887079754764365423588568883144278644135443048875378764445564167888
Q ss_pred HHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 76520198699975998279995795871999999999999999999838847336985377887402578863442112
Q gi|255764494|r 83 AKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAG 162 (652)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AG 162 (652)
+++++..||+++...|+...++..|+.|+|.++.+|+|.++++.|+.|++.++.++|+|||+||++.|||||++|.+|||
T Consensus 108 q~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag~iag 187 (640)
T KOG0102 108 QKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQIAG 187 (640)
T ss_pred HHHHHHCCCCEEECCCCCEEEEECCEEECHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf 89987377315873687479996776746889899999999999999717515642650178774888887676664315
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 22222221024788886034456550799872441145431010231465420133224552134476655367876420
Q gi|255764494|r 163 LDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKE 242 (652)
Q Consensus 163 l~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~ 242 (652)
|+|+|.+|||||||++||++++.++.++|||+||||||+||+.+.+|+|+|.+|.||.+|||.|||..+++|+.++|++.
T Consensus 188 l~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~fk~~ 267 (640)
T KOG0102 188 LNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKE 267 (640)
T ss_pred CEEECCCCCCCHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 20203678631667762236667775599985886266550012064268973167624472577789999877766204
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHC
Q ss_conf 13430244789999999999885411556503586304434678872126873110000123420000110011110101
Q gi|255764494|r 243 NGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDA 322 (652)
Q Consensus 243 ~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a 322 (652)
.++|+..+.++++||+.++||+|+.||..+++.+++|+++.|..+++++++++||.+||+++.++++|.++||.++|++|
T Consensus 268 ~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~aL~dA 347 (640)
T KOG0102 268 EGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKALRDA 347 (640)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEECCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 67451356999999998787665442010031401430222677870688741299898761788874132899988754
Q ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCCCCCE
Q ss_conf 35631101466307853056778865410111111135653101111100022346752210000235665322233420
Q gi|255764494|r 323 GLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGV 402 (652)
Q Consensus 323 ~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~~~~~ 402 (652)
++..+||+.|+||||.+|||+|++.+.+.||+.++.++||||+||.|||+|+++|+++++|++|+||+|++||||+.||.
T Consensus 348 ~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkdvlLLdVtpLsLgietlggv 427 (640)
T KOG0102 348 SLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGIETLGGV 427 (640)
T ss_pred CCCHHHHHHHHHHCCHHHCHHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHCCCHHHCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 68834433431224320147799999998388998886985110042331540221433210466154277778854134
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHH
Q ss_conf 24663389811024566545676412221100001222222222334531024567674435320000100110012221
Q gi|255764494|r 403 FTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQVS 482 (652)
Q Consensus 403 ~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGil~Vs 482 (652)
|++||||||+||+++++.|+|..|+|+.|.|+|+||||+++.+|++||+|.+.||||+|+|.|+|+|+|+||+|||++|+
T Consensus 428 ft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI~~vs 507 (640)
T KOG0102 428 FTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGIGTVS 507 (640)
T ss_pred HEECCCCCCCCCCHHHHHEEECCCCCCEEEEEEEECHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCEEEEE
T ss_conf 20224577636711443201002687247787663146663167530024530268877788852578861477514531
Q ss_pred CCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 02344420000000000011245668999999998999899999999999999999999999987220299899999999
Q gi|255764494|r 483 ALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRE 562 (652)
Q Consensus 483 a~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~~i~~ 562 (652)
|.++.|++.++|+|..+++||+++|++|+.++++++..|+..|+.++.+|.+++++|+++..+.++.++++.++..+|..
T Consensus 508 A~dk~t~K~qsi~i~~sggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~~~~~~~~~~~~~i~~ 587 (640)
T KOG0102 508 AKDKGTGKSQSITIASSGGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKEFEEKIPAEECEKLEE 587 (640)
T ss_pred HHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCHHHHHHHHHHCCHHHHHHHHH
T ss_conf 10103487554698605887889999999999987765677788764112100021276655233144375788888999
Q ss_pred HHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999998724-89878999999999999999999999984034455
Q gi|255764494|r 563 SIDALRTLLND-ADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDA 608 (652)
Q Consensus 563 ~l~e~e~wl~~-~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~~ 608 (652)
.+..+.+.+.. +..+...++.+...|++...++++.+|+..+....
T Consensus 588 ~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~~~~~ 634 (640)
T KOG0102 588 KISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNMGAGGE 634 (640)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999733024770568999999987656999999743024688
No 14
>KOG0101 consensus
Probab=100.00 E-value=0 Score=991.08 Aligned_cols=596 Identities=52% Similarity=0.842 Sum_probs=569.4
Q ss_pred CCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH
Q ss_conf 81699804866069999989955997568986256279999489989966789863330835110020675498687267
Q gi|255764494|r 2 SKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDST 81 (652)
Q Consensus 2 s~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (652)
+.+||||||||||+|+++.++.+++++|+.|+|.|||+|+|.++ ++++|.+|+.|..+||+||++++||+||+.|+|+.
T Consensus 7 ~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~-e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~ 85 (620)
T KOG0101 7 SVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDT-ERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPE 85 (620)
T ss_pred CCEEEEECCCCCCEEEEECCCCCEEEECCCCCCCCCCEEEECCC-CCCHHHHHHHHHHCCCCCEEEEHHHHCCCCCCCHH
T ss_conf 64145750676422446748843155456667545531445465-30045666566500876505651333176456456
Q ss_pred HHHHHHCCCEEEEECCCCEEEEEE----CCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf 876520198699975998279995----7958719999999999999999998388473369853778874025788634
Q gi|255764494|r 82 VAKDASLVPFKIVEGKGGDAWIEA----QGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDA 157 (652)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~A 157 (652)
++..+++|||++....++.+.+.+ ..+.|+|+++++|+|.+++..|+.|||.++.++|+|||+||++.||+|+.+|
T Consensus 86 v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A 165 (620)
T KOG0101 86 VQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDA 165 (620)
T ss_pred HHHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEEHHCCCCHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHH
T ss_conf 67777538753234457861488514665204423553201315137899987447010699996487477899998879
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHCCCC--CCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 421122222222102478888603445--655079987244114543101023146542013322455213447665536
Q gi|255764494|r 158 GRIAGLDVLRIINEPTAAALAYGLDKK--DARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHI 235 (652)
Q Consensus 158 a~~AGl~v~~li~EptAAal~Y~~~~~--~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~ 235 (652)
|.+|||+++|+|||||||||+|+++++ ...+|+|||+||||||||++.+.+|.+.|+++.||++|||.|||+.|++||
T Consensus 166 ~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h~ 245 (620)
T KOG0101 166 ALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNHF 245 (620)
T ss_pred HHHCCCCEEEEECCHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 98568850364061689998754144656503589997689835545677336500111220365544113577899999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCC
Q ss_conf 78764201343024478999999999988541155650358630443467887212687311000012342000011001
Q gi|255764494|r 236 CDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPC 315 (652)
Q Consensus 236 ~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i 315 (652)
+.+|+++++.|++.|+++++||+.+||++|+.||+..++++.+++|++ |.||...|||.+||.+|.+++.+++.++
T Consensus 246 ~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~----g~d~~~~itrarfe~l~~dlf~~~~~~v 321 (620)
T KOG0101 246 AAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYE----GIDFYTSITRARFEELNADLFRSTLEPV 321 (620)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHC----CCCCCCEEEHHHHHHHHHHHHHHHHHHH
T ss_conf 999987613465424678888888999887540344431001221212----4533332015554312237888877888
Q ss_pred CCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHCCCCCCC----CCCCHHEECCC
Q ss_conf 11101013563110146630785305677886541011-11111356531011111000223467----52210000235
Q gi|255764494|r 316 KKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN-KSPSKGVNPDEVVAMGAAIQAGVLQG----DVKDLLLLDVT 390 (652)
Q Consensus 316 ~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg-~~~~~~~npdeaVa~GAA~~a~~ls~----~~~~~~~~dv~ 390 (652)
+++|+++++++.+|+.|+|||||||||++|..++++|+ ++++.++||||+||+|||+|||++++ .+.++++.|+.
T Consensus 322 ~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~ 401 (620)
T KOG0101 322 EKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVA 401 (620)
T ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
T ss_conf 88887623575677426872663446678999998741210246788778777647777652158764223441453023
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 66532223342024663389811024566545676412221100001222222222334531024567674435320000
Q gi|255764494|r 391 PLSLGIETLGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVA 470 (652)
Q Consensus 391 p~slgie~~~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vt 470 (652)
|+++||++.+|.|+++|+|||++|++++++|+|+.|||+.+.|+||||||.+++||..||.|.|.||||+|+|.|+|+|+
T Consensus 402 pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~Ievt 481 (620)
T KOG0101 402 PLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVT 481 (620)
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEE
T ss_conf 55544201477201232046656502333214214688843788886420015667500157635899765677544899
Q ss_pred HHCCCCHHHHHHCCCCCCCCHHCHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1001100122210234442000000000-001124566899999999899989999999999999999999999998722
Q gi|255764494|r 471 FDIDANGIVQVSALDKGTGKAQQISIQA-SGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHG 549 (652)
Q Consensus 471 f~id~nGil~Vsa~~~~t~~~~~i~i~~-~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~ 549 (652)
|.+|.||||+|+|.+++||+.+.++|.+ .++||+++|++|..+|+.+..+|...++++.++|.+|+|+|.++..+++..
T Consensus 482 fdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~ 561 (620)
T KOG0101 482 FDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK 561 (620)
T ss_pred EECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95278877877721456776331898546233407677777666553013388899899877558899876441344420
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02998999999999999999872489-878999999999999999999999984
Q gi|255764494|r 550 DKIAEAEQKSIRESIDALRTLLNDAD-PDESKIKEATQKLMEVSMNLGKAIYEA 602 (652)
Q Consensus 550 ~klse~ek~~i~~~l~e~e~wl~~~~-~d~~~i~~~~~~L~e~~~~i~~~~~~~ 602 (652)
++++++++.++.+.+.+...||+.+. ....+++.+..+|+..+.++..++|+.
T Consensus 562 ~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101 562 GKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHCCCC
T ss_conf 537866777789999999998751553331178999989986502887750157
No 15
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=959.80 Aligned_cols=573 Identities=63% Similarity=0.937 Sum_probs=550.0
Q ss_pred CCEEEEECCCCEEEEEEEECC-EEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf 816998048660699999899-5599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r 2 SKVIGIDLGTTNSCVAIMDGK-NVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS 80 (652)
Q Consensus 2 s~viGIDlGtt~s~va~~~~~-~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (652)
+.+||||||||||+||+++++ .+.++.|..|.|.|||+|+|..++++++|..|++++..||.+|++++||+||+.
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~v~~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~---- 80 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRG---- 80 (579)
T ss_pred CEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCCCCEEEEECCCCCEEECHHHHHHHHHCCCCEEEEEECCCCCC----
T ss_conf 7178996177628999980798605701887775675389988998788669999876608866289986146877----
Q ss_pred HHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 78765201986999759982799957958719999999999999999998388473369853778874025788634421
Q gi|255764494|r 81 TVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRI 160 (652)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~ 160 (652)
.......+.+.++.|+|+||++++|++||+.|+.+++.+++++|||||+||++.||+++++||++
T Consensus 81 ---------------~~~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~i 145 (579)
T COG0443 81 ---------------SNGLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARI 145 (579)
T ss_pred ---------------CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf ---------------66776226646813389999999999999999987388764589992487578899999999986
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 12222222210247888860344565507998724411454310102314654201332245521344766553678764
Q gi|255764494|r 161 AGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK 240 (652)
Q Consensus 161 AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~ 240 (652)
|||+++||+|||||||++|++++..+++|+||||||||||+||+++.+|.++|+++.||.+|||+|||.+|++|++.+|+
T Consensus 146 aGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~ 225 (579)
T COG0443 146 AGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFK 225 (579)
T ss_pred CCCCEEEECCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 69972452160599999977334888579999868988678999984868998652788754815489999999998850
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCH
Q ss_conf 20134302447899999999998854115565035863044346788721268731100001234200001100111101
Q gi|255764494|r 241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQ 320 (652)
Q Consensus 241 ~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~ 320 (652)
+++++|++.++++++||+.+||++|+.||+++++.++++++..+ +++..+|||++||+++.+++.++..+++++|.
T Consensus 226 ~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~----~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~ 301 (579)
T COG0443 226 GKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFEELILDLLERTIEPVEQALK 301 (579)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 24886612037799999999999999714562202102121464----05666725999987778999999999999999
Q ss_pred HCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCCCC
Q ss_conf 01356311014663078530567788654101111111356531011111000223467522100002356653222334
Q gi|255764494|r 321 DAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLG 400 (652)
Q Consensus 321 ~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~~~ 400 (652)
++++++.+|+.|+||||+||||.|++.++++||+++.+++||||+||.|||+||+.+++...++++.|++|+++|+++.+
T Consensus 302 ~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~d~ll~Dv~plslgie~~~ 381 (579)
T COG0443 302 DAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLG 381 (579)
T ss_pred HCCCCHHHCCEEEEECCEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCC
T ss_conf 74998532766998357755666999999982877435779747899999999876248766605888876305414474
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHH
Q ss_conf 20246633898110245665456764122211000012222222223345310245676744353200001001100122
Q gi|255764494|r 401 GVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQ 480 (652)
Q Consensus 401 ~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGil~ 480 (652)
+.+.++|+||+++|++++..|+|..|+|+.+.++++|||+.++.+|..||.|++.+|||+|+|.|+|+|+|.+|.||+++
T Consensus 382 ~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~ 461 (579)
T COG0443 382 GVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILN 461 (579)
T ss_pred HHHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEEEEECCHHHHCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCEEE
T ss_conf 36663675079998643413564168874158899605312203676301355477887768887279995358875478
Q ss_pred HHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 21023444200000000000112456689999999989998999999999999999999999999872202998999999
Q gi|255764494|r 481 VSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSI 560 (652)
Q Consensus 481 Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~~i 560 (652)
|++.++.+|++++++|+.+.+|++++|++|+++++.+++.|+..++..+.+|+++.+++.+++.|++.. ++++++++.+
T Consensus 462 v~a~~~~~~k~~~i~i~~~~~l~~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~ 540 (579)
T COG0443 462 VTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKI 540 (579)
T ss_pred EEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHH
T ss_conf 750025788557899637888887898653446777565455667666325407789999998760324-6877779999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987248987899999999999999999999998
Q gi|255764494|r 561 RESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYE 601 (652)
Q Consensus 561 ~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~ 601 (652)
...++++++||++ + ..+++.+.++|++..+++..+.|+
T Consensus 541 ~~~~~~~~~~l~~-~--~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 541 EEAITDLEEALEG-E--KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHHC-C--HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999998723-4--988988899999987676677505
No 16
>KOG0103 consensus
Probab=100.00 E-value=0 Score=859.19 Aligned_cols=582 Identities=32% Similarity=0.536 Sum_probs=520.4
Q ss_pred CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf 98169980486606999998995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS 80 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (652)
|| |+|||||+.||.+|+++.++.++|.|+.|+|.||++|+|+++ .|++|.+|+++..+|+.||+.++|||+||.|+||
T Consensus 1 ms-vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K-~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP 78 (727)
T KOG0103 1 MS-VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPK-NRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDP 78 (727)
T ss_pred CC-CEEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEECCC-CCEEEECCCCCEEECCCCCCHHHHHHHCCCCCCH
T ss_conf 98-313302665434432021773355304333457522322566-5245431564222020026336665504234783
Q ss_pred HHHHHHHCCCEEEEECCCCEEEEEEC----CEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHH
Q ss_conf 78765201986999759982799957----95871999999999999999999838847336985377887402578863
Q gi|255764494|r 81 TVAKDASLVPFKIVEGKGGDAWIEAQ----GKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKD 156 (652)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~ 156 (652)
.+|.+.+++||+++..++|.+++.+. .+.|+|+||+||+|.+||.+|+..+..++.+|||+||+||++.||+++++
T Consensus 79 ~~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravld 158 (727)
T KOG0103 79 EVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLD 158 (727)
T ss_pred HHHHCCCCCCHHEEECCCCCCCEEEHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 76531000653205668887000211026788997389999999998999998647888870386430005788888872
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCCCCC-------CCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHH
Q ss_conf 44211222222221024788886034456-------55079987244114543101023146542013322455213447
Q gi|255764494|r 157 AGRIAGLDVLRIINEPTAAALAYGLDKKD-------ARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDS 229 (652)
Q Consensus 157 Aa~~AGl~v~~li~EptAAal~Y~~~~~~-------~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~ 229 (652)
||++|||+++||+||.||+||+||+.+.+ +++|+++|||++++.+|++.|.+|.+.++++.+|++|||++||.
T Consensus 159 AA~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe 238 (727)
T KOG0103 159 AARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDE 238 (727)
T ss_pred HHHHCCCCCEEEEECCHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHH
T ss_conf 77536754035651153767530310266887555764478875265411441102045752122320240115621889
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHH
Q ss_conf 66553678764201343024478999999999988541155650358630443467887212687311000012342000
Q gi|255764494|r 230 CLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQ 309 (652)
Q Consensus 230 ~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~ 309 (652)
+|.+||+++|+.+|++|++.|++|+.||+.+|||+|+.||+|+.++++|++++++ +|++..|+|++||++|.|+++
T Consensus 239 ~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d----~dvs~~i~ReEfEel~~plL~ 314 (727)
T KOG0103 239 ALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMND----KDVSSKIKREEFEELSAPLLE 314 (727)
T ss_pred HHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEC----CHHHHHCCHHHHHHHHHHHHH
T ss_conf 9999999984546650353254578999999999999860476788444003405----304414248999998899998
Q ss_pred HHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC--CCCCHHEE
Q ss_conf 0110011110101356311014663078530567788654101111111356531011111000223467--52210000
Q gi|255764494|r 310 KTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG--DVKDLLLL 387 (652)
Q Consensus 310 ~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~--~~~~~~~~ 387 (652)
|+..|+.++|++++++.+||+.|++|||+||||.|+++|+++||+++.+++|.|||||+|||+|||+||| +++++.+.
T Consensus 315 rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~ 394 (727)
T KOG0103 315 RVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVE 394 (727)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEECCEE
T ss_conf 61378999999815761464059985586532678999999847765621048999987588777761840011120100
Q ss_pred CCCCCCCCCCCCC-----CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2356653222334-----202466338981102456654567641222110000122-2222222334531024567674
Q gi|255764494|r 388 DVTPLSLGIETLG-----GVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGE-RKMFADNKLLGQFDLVGIPPAP 461 (652)
Q Consensus 388 dv~p~slgie~~~-----~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe-~~~~~~n~~lg~~~i~~i~~~~ 461 (652)
|+.||++.+.|.+ +....+||+|.++|..|..||.+..+| .+.+++.. ..+...-..|++|++.++.|..
T Consensus 395 Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~~F----~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~ 470 (727)
T KOG0103 395 DIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKGPF----TLEAKYTKVNKLPYPKPKIEKWTITGVTPSE 470 (727)
T ss_pred CCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCE----EEEEEECCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 243114799833663457873056047887887347888705864----8898733600069987741368843643576
Q ss_pred CCC-CCCCHHHHCCCCHHHHHHCC--------------CCC--C---C------CHHC-------HHH--CCCCCCCHHH
Q ss_conf 435-32000010011001222102--------------344--4---2------0000-------000--0000112456
Q gi|255764494|r 462 KGT-PQIEVAFDIDANGIVQVSAL--------------DKG--T---G------KAQQ-------ISI--QASGGLSSED 506 (652)
Q Consensus 462 ~G~-~~I~vtf~id~nGil~Vsa~--------------~~~--t---~------~~~~-------i~i--~~~~~Ls~ee 506 (652)
.|. .+++|..++|.+||++++.. ... + + .+.+ +.+ ...++|+..+
T Consensus 471 ~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~ 550 (727)
T KOG0103 471 DGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDE 550 (727)
T ss_pred CCCCCCEEEEEEECCCCCEEEECCEEECCCCHHCCCCCHHHHHCCHHHHHHHCCCCCCCEEEECCCCCEEEECCCCCHHH
T ss_conf 66656136899875766236640244111111002222222201223344423445654145305542000024558889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHH--HHHH
Q ss_conf 68999999998999899999999999999999999999987-22029989999999999999998724898789--9999
Q gi|255764494|r 507 IEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLRE-HGDKIAEAEQKSIRESIDALRTLLNDADPDES--KIKE 583 (652)
Q Consensus 507 i~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e-~~~klse~ek~~i~~~l~e~e~wl~~~~~d~~--~i~~ 583 (652)
++..++...+|..+|+...++.++||.+|+|||++|.+|.+ +.++++++++++|...++++++|||+++.|.. .|..
T Consensus 551 l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~ 630 (727)
T KOG0103 551 LELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVA 630 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 99998888876642113555321777899999999998654665432788999999988888877774176431588999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|255764494|r 584 ATQKLMEVS 592 (652)
Q Consensus 584 ~~~~L~e~~ 592 (652)
++++|....
T Consensus 631 kl~elk~~g 639 (727)
T KOG0103 631 KLEELKKLG 639 (727)
T ss_pred HHHHHHHHH
T ss_conf 999998621
No 17
>KOG0104 consensus
Probab=100.00 E-value=0 Score=724.49 Aligned_cols=597 Identities=28% Similarity=0.434 Sum_probs=508.2
Q ss_pred CCEEEEECCCCEEEEEEEECCEE-EEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf 81699804866069999989955-99756898625627999948998996678986333083511002067549868726
Q gi|255764494|r 2 SKVIGIDLGTTNSCVAIMDGKNV-RVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS 80 (652)
Q Consensus 2 s~viGIDlGtt~s~va~~~~~~~-~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (652)
++|.+||||+.|..||++.+|.| +|++|.+++|++||+|+|. +++|+||++|.+++.++|.+++..++.|+|+.+.||
T Consensus 22 ~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk-~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~ 100 (902)
T KOG0104 22 LAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFK-GGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDP 100 (902)
T ss_pred HHHEEEECCCCEEEEEEECCCCCEEEEECHHHCCCCCCEEEEC-CCCEEHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
T ss_conf 0330540365225788834999707864513225686158861-784533656645654092889999998747645770
Q ss_pred HHHHHHHCCC-EEEEECC-CCEEEEEECC-EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf 7876520198-6999759-9827999579-58719999999999999999998388473369853778874025788634
Q gi|255764494|r 81 TVAKDASLVP-FKIVEGK-GGDAWIEAQG-KQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDA 157 (652)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~-~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~A 157 (652)
.++.+.+.+| |.++.++ .+.+.|.+.+ ..|++|+++||+|.+.++.|+.+...+|+++|||||+||+++||+|+++|
T Consensus 101 ~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~A 180 (902)
T KOG0104 101 TVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQA 180 (902)
T ss_pred HHHHHHHCCCCEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCHHHHHHHHHH
T ss_conf 88898711876342136766437898178541679999999999999999998736143269967864588999999989
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHCCCC-----CCCEEEEEEECCCEEEEEEEEEC----------CCEEEEECCCCCCCC
Q ss_conf 421122222222102478888603445-----65507998724411454310102----------314654201332245
Q gi|255764494|r 158 GRIAGLDVLRIINEPTAAALAYGLDKK-----DARTVIVFDFGGGTFDVSLLEMG----------DGVFEVKATNGDTFL 222 (652)
Q Consensus 158 a~~AGl~v~~li~EptAAal~Y~~~~~-----~~~~vlV~D~Gggt~dvsi~~~~----------~~~~~vl~~~gd~~l 222 (652)
|+|||++|++||||.+||||.||+++. .+++++|||||+|++.++|+.+. ...+++++.++|++|
T Consensus 181 a~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tL 260 (902)
T KOG0104 181 AQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTL 260 (902)
T ss_pred HHHCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCC
T ss_conf 88628511121156508776520110346788860799996478842699999982213225676644899862147766
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCC
Q ss_conf 52134476655367876420134--3024478999999999988541155650358630443467887212687311000
Q gi|255764494|r 223 GGEDFDSCLVEHICDTFKKENGI--DLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF 300 (652)
Q Consensus 223 GG~d~D~~l~~~~~~~~~~~~~~--d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~f 300 (652)
||..|.++|.+|+...|.++++. |++.|+|||.||.++|+|+|..||+|..+.++|+++.+| +||..+|||++|
T Consensus 261 GG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~dd----iDFr~kvTRe~f 336 (902)
T KOG0104 261 GGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDD----IDFRLKVTREEF 336 (902)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC----CCCCCCEEHHHH
T ss_conf 5177888999999999988638743112498899999999999988860460667779887505----430121019999
Q ss_pred CCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 012342000011001111010135631101466307853056778865410111-1111356531011111000223467
Q gi|255764494|r 301 ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK-SPSKGVNPDEVVAMGAAIQAGVLQG 379 (652)
Q Consensus 301 e~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~-~~~~~~npdeaVa~GAA~~a~~ls~ 379 (652)
|++|.++..|+..||++||..|+++.++|+.|+|+||+||+|.||+.|.++.|+ ++.+++|+|||+|+||++|||.||.
T Consensus 337 Eelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSk 416 (902)
T KOG0104 337 EELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSK 416 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99998888864345999998647880000106883475567359999999973898742468147888789988776404
Q ss_pred --CCCCHHEECCCCCCCCCC--CCCC------EEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCCHHCCCCCCCCCCCCC
Q ss_conf --522100002356653222--3342------02466338981102456654567641-222110000122222222233
Q gi|255764494|r 380 --DVKDLLLLDVTPLSLGIE--TLGG------VFTSIIDRNSTIPTKKSQVFSTAADN-QSAVSIRIGQGERKMFADNKL 448 (652)
Q Consensus 380 --~~~~~~~~dv~p~slgie--~~~~------~~~~ii~~~~~iP~~k~~~f~t~~d~-q~~i~i~v~eGe~~~~~~n~~ 448 (652)
+++.+.+.|..+|++-++ +..| ....+|++|.+||.++..+|+.+.|+ ...+.+..++ + -
T Consensus 417 sFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~~~~~-------~--n 487 (902)
T KOG0104 417 SFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINYGDLG-------Q--N 487 (902)
T ss_pred CCCCCCEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHC-------C--C
T ss_conf 632122035642433289995467764456314888886178678863242466677630012456644-------6--7
Q ss_pred CCCCCCCCCCCC----CCC---CCCCCHHHHCCCCHHHHHHCCC-------------------C----------------
Q ss_conf 453102456767----443---5320000100110012221023-------------------4----------------
Q gi|255764494|r 449 LGQFDLVGIPPA----PKG---TPQIEVAFDIDANGIVQVSALD-------------------K---------------- 486 (652)
Q Consensus 449 lg~~~i~~i~~~----~~G---~~~I~vtf~id~nGil~Vsa~~-------------------~---------------- 486 (652)
+..|.|.|+.-+ +.. ..-|+++|.+|.+|++.|+-.+ +
T Consensus 488 l~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~ 567 (902)
T KOG0104 488 LTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQ 567 (902)
T ss_pred CCEEEEECCHHHHHHCCCCHHHCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 50899822137877465501204571599998276756874146888415775431046565304666323435555320
Q ss_pred --------------CCCCH-------------H--------------------CHHHCCCC----CCCHHHHHHHHHHHH
Q ss_conf --------------44200-------------0--------------------00000000----112456689999999
Q gi|255764494|r 487 --------------GTGKA-------------Q--------------------QISIQASG----GLSSEDIEKMVKDAE 515 (652)
Q Consensus 487 --------------~t~~~-------------~--------------------~i~i~~~~----~Ls~eei~~~~~eae 515 (652)
+++.+ + .+.|+..+ -|++..++......+
T Consensus 568 ~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~ 647 (902)
T KOG0104 568 EEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLE 647 (902)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 23455514686544566432223321013332000100474111035676226765456326656776668999999889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHH
Q ss_conf 98999899999999999999999999999987--220299899999999999999987248987--89999999999999
Q gi|255764494|r 516 MNAEMDKKRREAVETKNHAESLIYSTEQSLRE--HGDKIAEAEQKSIRESIDALRTLLNDADPD--ESKIKEATQKLMEV 591 (652)
Q Consensus 516 ~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e--~~~klse~ek~~i~~~l~e~e~wl~~~~~d--~~~i~~~~~~L~e~ 591 (652)
.+.+.|+.+.++.++-|.||.++|.++.+|++ +.+..+++|++.|.+.+..+.+||+++..+ ...+.+++.+|+++
T Consensus 648 d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l 727 (902)
T KOG0104 648 DFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKL 727 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99874325778999998999999999987447367664289899999999999999987640246266788899999998
Q ss_pred HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999999999840344556666
Q gi|255764494|r 592 SMNLGKAIYEAQAKKDAAADT 612 (652)
Q Consensus 592 ~~~i~~~~~~~~~~~~~~~~~ 612 (652)
...+..+..+..+.++.....
T Consensus 728 ~~~~~~R~ee~kq~pe~l~~l 748 (902)
T KOG0104 728 ETSKNFREEERKQFPEELEAL 748 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 721237899988615799999
No 18
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=0 Score=531.10 Aligned_cols=360 Identities=27% Similarity=0.368 Sum_probs=275.1
Q ss_pred EEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHH--------HHHHCCCC
Q ss_conf 9980486606999998995599756898625627999948998996678986333083511002--------06754986
Q gi|255764494|r 5 IGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFA--------AKRLIGRR 76 (652)
Q Consensus 5 iGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~--------~KrliG~~ 76 (652)
||||||||||+||++++|.|++|+++.|.+.+||+|++.+ . .+++..+..+....|.+++.. ++|.++..
T Consensus 3 IGIDfGTTNS~VAv~~~g~~~vi~~~~~~~~~PS~v~~~~-~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (450)
T PRK11678 3 IGFDYGTANCSVAVMRDGKPQLLPLENDSTYLPSTLCAPT-R-EAVSEWLYRHLDVPAKDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred EEEEECHHHEEEEEEECCEEEEEECCCCCCCCCEEEEECC-C-CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 9998471323328998998899981898925565899447-5-0444899865022643205676666665302112346
Q ss_pred CCCHHHHHHHHCCCEEEEECCCCEEEEE-----ECCE------EECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 8726787652019869997599827999-----5795------8719999999999999999998388473369853778
Q gi|255764494|r 77 FNDSTVAKDASLVPFKIVEGKGGDAWIE-----AQGK------QYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAY 145 (652)
Q Consensus 77 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~ 145 (652)
..+..+......... ....+.....++ .+.. ....++|++.+|++||..||.++|.+++++|||||+|
T Consensus 81 ~~~~~~~~g~~a~~~-~~~~p~~~~~v~s~k~~Lg~~~~~~~q~~~~e~lva~iL~~lk~~Ae~~lg~~v~~aVItvPa~ 159 (450)
T PRK11678 81 VTAQSVFFGLAALAQ-YLEDPEEGYYVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAESQLQAAITQAVIGRPVN 159 (450)
T ss_pred CCCCCEEECHHHHHH-HHCCCCCEEEEECCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 676516514888987-7438874037414501036667771022139999999999999999998388755328972773
Q ss_pred CC-----CCHHHHH---HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCC-------E
Q ss_conf 87-----4025788---6344211222222221024788886034456550799872441145431010231-------4
Q gi|255764494|r 146 FN-----DAQRQAT---KDAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDG-------V 210 (652)
Q Consensus 146 f~-----~~qR~a~---~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~-------~ 210 (652)
|+ +.||+|+ ++||++|||++++|+|||||||++|+.....++++|||||||||||+||+++.++ .
T Consensus 160 F~~~~~d~~~~qA~~~l~~AA~~AGl~~v~~lnEPtAAAlaY~~~~~~~~~vLV~DlGGGT~DvSlv~~~~~~~~~~~~~ 239 (450)
T PRK11678 160 FQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDYEATLTEDKTVLVVDIGGGTTDCSLLLMGPSWRGKADRS 239 (450)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEEEECCCCEECCCCC
T ss_conf 56889608999999999999997599736753285899999870568898799999089848887478548711104666
Q ss_pred EEEECCCCCCCCCCHHHHHHHH-HHHHHHHHHHC----CCC--------------------------------HH---HH
Q ss_conf 6542013322455213447665-53678764201----343--------------------------------02---44
Q gi|255764494|r 211 FEVKATNGDTFLGGEDFDSCLV-EHICDTFKKEN----GID--------------------------------LK---QD 250 (652)
Q Consensus 211 ~~vl~~~gd~~lGG~d~D~~l~-~~~~~~~~~~~----~~d--------------------------------~~---~~ 250 (652)
..|++++|+ +|||+|||.+|+ +.+.+.|.... +.+ +. ..
T Consensus 240 ~~vla~~G~-~lGG~DfD~~l~~~~~~p~~G~~~~~~~g~~~p~~~~~~~~~~~~i~~q~~~~~~~~~~~l~~l~~~~~~ 318 (450)
T PRK11678 240 ASLLGHSGQ-RIGGNDLDIALAFKQLMPLLGMGSETEKGIPMPSLPFWNAVAINDVPAQSDFYSLANRRLLNDLIRDARE 318 (450)
T ss_pred CCEECCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 512224687-6785668899898776676344520014765751355544422011344443226679999999976315
Q ss_pred HHHH------------HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 7899------------9999999988541155650358630443467887212687311000012342000011001111
Q gi|255764494|r 251 TLAL------------QRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKC 318 (652)
Q Consensus 251 ~~a~------------~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~ 318 (652)
+..+ .+|..+||++|+.||.+.++.+.++++. .+++.+|||++||.+|+|+++|+..+|+++
T Consensus 319 ~~~~~rL~~~~~~~~~~~l~~~aE~aKi~LS~~~~~~~~l~~~~------~~~~~~itr~~fe~~i~~~l~r~~~~~~~~ 392 (450)
T PRK11678 319 PEKLARLLKVQRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS------DGLAVEISQQGLEEAISQPLARILELVQLA 392 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC------CCEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57789999988776657999999999998088971788534777------752778779999999999999999999999
Q ss_pred CHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 01013563110146630785305677886541011111113565310111110002234
Q gi|255764494|r 319 LQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVL 377 (652)
Q Consensus 319 L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~l 377 (652)
|++|++++ |.|+|||||||||.||+.++++||..+..+.||+++||.|+|++|..+
T Consensus 393 L~~Ag~~~---D~V~lvGGss~iP~Vr~~~~~~Fg~~~~~~~d~~~sVa~GlA~~A~~~ 448 (450)
T PRK11678 393 LDQAQVKP---DVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARWAEVV 448 (450)
T ss_pred HHHCCCCC---CEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99759999---989984863501899999999769997447798432988699999886
No 19
>pfam06723 MreB_Mbl MreB/Mbl protein. This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl.
Probab=100.00 E-value=0 Score=506.15 Aligned_cols=314 Identities=24% Similarity=0.375 Sum_probs=256.2
Q ss_pred CCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCE--EECHHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 81699804866069999989955997568986256279999489989--9667898633308351100206754986872
Q gi|255764494|r 2 SKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGER--LVGQPAKRQAVTNPSNTIFAAKRLIGRRFND 79 (652)
Q Consensus 2 s~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~--~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 79 (652)
|+.||||||||||+|++...| ++.|+ ||+|+|..++.. .||..|+++..++|.++.. .+
T Consensus 1 ~~~iGIDLGTtnS~i~~~~~g---~v~~~------PSvVa~~~~~~~~i~vG~~Ak~~~~~~p~~~~~-~~--------- 61 (327)
T pfam06723 1 SKDIGIDLGTANTLVYVKGKG---IVLNE------PSVVAINTKTKKVLAVGNEAKKMLGRTPGNIVA-VR--------- 61 (327)
T ss_pred CCEEEEECCHHHEEEEECCCC---EECCC------CCEEEEECCCCEEEECCHHHHHHCCCCCCCEEE-EE---------
T ss_conf 976899875540899987998---79888------859999879988997239999735479997699-99---------
Q ss_pred HHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 67876520198699975998279995795871999999999999999999838847336985377887402578863442
Q gi|255764494|r 80 STVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGR 159 (652)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~ 159 (652)
...+..+++.++++.+|++|++.++.+++.++.++|||||+||++.||+||++||+
T Consensus 62 ------------------------~~~~g~~~~~e~~~~il~~l~~~~~~~~~~~~~~aVItVPa~f~~~qR~at~~Aa~ 117 (327)
T pfam06723 62 ------------------------PLKDGVIADFEVTEAMLKYFIKKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAK 117 (327)
T ss_pred ------------------------ECCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf ------------------------77898675788879999999999974027899978999799999999999999999
Q ss_pred HCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11222222221024788886034456550799872441145431010231465420133224552134476655367876
Q gi|255764494|r 160 IAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTF 239 (652)
Q Consensus 160 ~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~ 239 (652)
+|||++++||||||||||+||++...+..+||||||||||||||+++.+ +.+.++.+|||+|||++|++|+.++|
T Consensus 118 ~AGl~v~~li~EPtAAAlaygl~~~~~~~~lV~DlGGGT~Dvsvl~~~~-----~~~~~~~~lGG~dfD~~i~~~~~~~~ 192 (327)
T pfam06723 118 NAGAREVFLIEEPMAAAIGAGLPVEEPTGNMVVDIGGGTTEVAVISLGG-----IVTSKSVRVAGDEMDEAIIKYIRKKY 192 (327)
T ss_pred HCCCCEEEEECCHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEEECC-----EEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7699879986647999987188766886049999579827999998388-----67775525034016899999999865
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 420134302447899999999998854115565035863--044346788721268731100001234200001100111
Q gi|255764494|r 240 KKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINL--PFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKK 317 (652)
Q Consensus 240 ~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i--~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~ 317 (652)
++++. ...||++|+.||....+.... +....+...|..+++.|||++|+++|+|+++++.++|++
T Consensus 193 ----~~~i~---------~~~ae~~K~~ls~~~~~~~~~~~~~~~~d~~~g~~~~~~it~~e~~~~~~~~~~~~~~~i~~ 259 (327)
T pfam06723 193 ----NLLIG---------ERTAERIKIEIGSAYPTEEEEKMEIRGRDLVTGLPKTIEISSEEVREALKEPVSAIVEAVKE 259 (327)
T ss_pred ----HHHHC---------HHHHHHHHHHHHHCHHCCCCCCEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----04428---------89999999998747220046766874342346886532754999999999999999999999
Q ss_pred CCHHC--CCCCEEEEE-EEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 10101--356311014-663078530567788654101111111356531011111000223
Q gi|255764494|r 318 CLQDA--GLSPSDIDE-VVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGV 376 (652)
Q Consensus 318 ~L~~a--~~~~~~I~~-V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ 376 (652)
+|+++ .+..+.++. |+|||||||||.|+++|+++||+++..++|||||||+|||+++..
T Consensus 260 ~L~~~~~~l~~d~~d~~ViLvGGsSriP~v~~~l~~~fg~~~~~~~nPd~aVA~GAAi~~~~ 321 (327)
T pfam06723 260 VLEKTPPELAADIVDRGIVLTGGGALLRGLDKLLSDETGLPVHIAEDPLTCVALGTGKALEN 321 (327)
T ss_pred HHHHCCHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99856264521214782999776244147999999997849888988677999989999857
No 20
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=0 Score=481.78 Aligned_cols=316 Identities=24% Similarity=0.336 Sum_probs=255.2
Q ss_pred CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCC-EE-ECHHHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf 98169980486606999998995599756898625627999948998-99-66789863330835110020675498687
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGE-RL-VGQPAKRQAVTNPSNTIFAAKRLIGRRFN 78 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~-~~-vG~~A~~~~~~~p~~ti~~~KrliG~~~~ 78 (652)
||+.||||||||||+|++...| ++.|+ ||+|+|..++. .+ ||+.|+++..++|.++.. .+
T Consensus 8 ~~~~iGIDLGTtns~i~~~~~g---ii~~~------PSvVa~~~~~~~i~~vG~~Ak~~~~~~p~~~~~-~~-------- 69 (336)
T PRK13930 8 FSKDIGIDLGTANTLVYVKGKG---IVLNE------PSVVAVDKKTGKVLAVGEEAKAMLGRTPGNIEA-IR-------- 69 (336)
T ss_pred HCCEEEEECCHHCEEEEEECCC---EECCC------CEEEEEECCCCEEEEHHHHHHHHCCCCCCCEEE-EE--------
T ss_conf 4576699986353899991898---88988------859999879998984389999850489775699-99--------
Q ss_pred CHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 26787652019869997599827999579587199999999999999999983884733698537788740257886344
Q gi|255764494|r 79 DSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAG 158 (652)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa 158 (652)
+..+ ....+.++++.+|++|+..++..++....++|||||+||++.||+|+++||
T Consensus 70 ----------------pl~~---------g~i~d~e~~~~~l~~l~~~~~~~~~~~~~~~VItVPa~f~~~qR~a~~~Aa 124 (336)
T PRK13930 70 ----------------PLKD---------GVIADFEATEAMLRYFIKKARGRSSFGRPRIVICVPSGITEVERRAVREAA 124 (336)
T ss_pred ----------------ECCC---------CEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf ----------------6789---------815488999999999999998645889981999939999999999999999
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 21122222222102478888603445655079987244114543101023146542013322455213447665536787
Q gi|255764494|r 159 RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT 238 (652)
Q Consensus 159 ~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~ 238 (652)
++|||++++|||||||||++||++...+..+||||||||||||||+++.+ +.+.++.+|||+|||++|++|+.++
T Consensus 125 ~~AGl~~v~li~EPtAAAl~~gl~~~~~~~~lVvDlGGGT~Dvsvl~~~~-----i~~~~~~~lGG~d~D~~i~~~i~~~ 199 (336)
T PRK13930 125 EHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGG-----IVYSESIRVAGDEMDEAIIQYVRRK 199 (336)
T ss_pred HHCCCCEEEEECCHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEEECC-----EEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 97699879985526999987189846786179999389854677887043-----4774460446265899999999986
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE--EECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCC
Q ss_conf 64201343024478999999999988541155650358--6304434678872126873110000123420000110011
Q gi|255764494|r 239 FKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEI--NLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCK 316 (652)
Q Consensus 239 ~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i--~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~ 316 (652)
|++.+.. ..||++|+.||+...... .++....+...|.+.++.|||++|+++++++++++.++++
T Consensus 200 ----~~~~i~~---------~~aE~~K~~l~~~~~~~~~~~~~v~g~d~~~g~~~~~~it~~~~~~~i~~~~~~i~~~i~ 266 (336)
T PRK13930 200 ----YNLLIGE---------RTAERIKIEIGSAYPLDEELSMEVRGRDLVTGLPRTIEISSEEIREALAEPLQQIVEAIK 266 (336)
T ss_pred ----HCCCCCH---------HHHHHHHHHHHHCCCCCCCCCCEEECEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf ----0633288---------999999999730544542433212110236798623776499999999999999999899
Q ss_pred CCCHHCC--CCCEEEEE-EEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 1101013--56311014-6630785305677886541011111113565310111110002234
Q gi|255764494|r 317 KCLQDAG--LSPSDIDE-VVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVL 377 (652)
Q Consensus 317 ~~L~~a~--~~~~~I~~-V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~l 377 (652)
++|+++. +..+.++. |+|||||||||.|+++|++.||.++..++|||+|||+|||+++..+
T Consensus 267 ~~L~~~~~el~~Di~~~gIiLvGGsSriP~i~~~l~e~~g~~v~~~~~P~~aVA~GAAi~~~~~ 330 (336)
T PRK13930 267 SVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL 330 (336)
T ss_pred HHHHCCCHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCH
T ss_conf 8875067232121126839998774551479999999978398889887779999999998587
No 21
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=0 Score=479.66 Aligned_cols=316 Identities=24% Similarity=0.346 Sum_probs=261.5
Q ss_pred CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCC--EEECHHHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf 98169980486606999998995599756898625627999948998--9966789863330835110020675498687
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGE--RLVGQPAKRQAVTNPSNTIFAAKRLIGRRFN 78 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~--~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~ 78 (652)
||+.||||||||||+|+....| ++.|+ ||+|+|..++. ..+|..|+.+..++|.++..-
T Consensus 3 ~~~~iGIDLGTtns~v~~~~~g---ii~~e------PSvva~d~~~~~~~avG~~Ak~~~~~~p~~i~~~---------- 63 (335)
T PRK13929 3 QSTEIGIDLGTANILVYSKNKG---IILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV---------- 63 (335)
T ss_pred CCCEEEEECCHHHEEEEECCCC---EECCC------CCEEEEECCCCEEEEECHHHHHHHCCCCCCEEEE----------
T ss_conf 8881689875352899987899---88847------8689997799729996499999715697768999----------
Q ss_pred CHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCE--EEEEECCCCCCCHHHHHHH
Q ss_conf 26787652019869997599827999579587199999999999999999983884733--6985377887402578863
Q gi|255764494|r 79 DSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSK--AVITVPAYFNDAQRQATKD 156 (652)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~--~VitVP~~f~~~qR~a~~~ 156 (652)
....+..+++.|+++.+|+++++.++.++|..+.+ +|||||+||++.||+|+++
T Consensus 64 ------------------------~p~~~g~i~d~e~s~~iL~~l~~~a~~~~g~~~~~p~~VItVPa~ft~~qR~A~~~ 119 (335)
T PRK13929 64 ------------------------RPMKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPTVVVCTPSGSTAVERRAISD 119 (335)
T ss_pred ------------------------EECCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf ------------------------85789634566767999999999999851876688878999299999999999999
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 44211222222221024788886034456550799872441145431010231465420133224552134476655367
Q gi|255764494|r 157 AGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHIC 236 (652)
Q Consensus 157 Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~ 236 (652)
||++||+++++||||||||||+||++..++..+||||+||||||+||+++.+ +.+.++.+|||+|||++|++|+.
T Consensus 120 Aa~~AG~~~v~li~EPtAAAlg~gl~~~~~~~~lV~DlGGGT~Dvsvl~~~g-----v~~~~~~~lGG~d~D~aI~~~v~ 194 (335)
T PRK13929 120 AVKNCGAKQVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGG-----VVSCHSIRIGGDQLDEDIVSFVR 194 (335)
T ss_pred HHHHCCCEEEEEECCHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECC-----EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 9997598089984406899987798667785299999479725899999678-----68527846667668899999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC--EEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHC
Q ss_conf 876420134302447899999999998854115565--035863044346788721268731100001234200001100
Q gi|255764494|r 237 DTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTS--QTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEP 314 (652)
Q Consensus 237 ~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~--~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~ 314 (652)
++|....+ . ..+|++|+.|+... .....++....+...|...++.+++++|+.+|++++.++.++
T Consensus 195 ~~~~~~ig----~---------~~ae~~k~~~~~~~~~~~~~~~~v~g~~~~~g~p~~~~l~~~~~~~~~~~~~~~i~~~ 261 (335)
T PRK13929 195 KKYNLLIG----E---------RTAEQVKIEIGYALIDHETETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEA 261 (335)
T ss_pred HHHCHHCC----H---------HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHH
T ss_conf 86351108----9---------9999999996020022677651777653468987039974899999999999999999
Q ss_pred CCCCCHHC--CCCCEEEE-EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 11110101--35631101-46630785305677886541011111113565310111110002234
Q gi|255764494|r 315 CKKCLQDA--GLSPSDID-EVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVL 377 (652)
Q Consensus 315 i~~~L~~a--~~~~~~I~-~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~l 377 (652)
++++|+++ .+..+.++ .|+||||+||+|.|+++|++.||.++..++|||||||+|||+++.++
T Consensus 262 i~~~L~~~~pel~~di~d~gIvLvGG~srip~i~~~l~~~~~~~v~~~~nP~~~Va~GAa~~~~~i 327 (335)
T PRK13929 262 IRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSQEIVVPVHVAANPLESVAIGTGRSLEVI 327 (335)
T ss_pred HHHHHHHCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999998388433254327829997740432679999999978198779886767999899999769
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=0 Score=478.01 Aligned_cols=313 Identities=23% Similarity=0.352 Sum_probs=253.1
Q ss_pred CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCC--EEECHHHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf 98169980486606999998995599756898625627999948998--9966789863330835110020675498687
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGE--RLVGQPAKRQAVTNPSNTIFAAKRLIGRRFN 78 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~--~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~ 78 (652)
|++.||||||||||+|. ..++. ++.|+ ||+|+|..++. ..||+.|+.+..++|.++.. +++
T Consensus 2 ~~~~iGIDLGTtn~~v~--~~~~~-iv~~e------PSvVa~~~~~~~~l~vG~~Ak~~~~~~p~~~~~-~~p------- 64 (325)
T PRK13928 2 FGRDIGIDLGTANVLVY--VKGKG-IVLNE------PSVVAIDRNTNKVLAVGEEARRMVGRTPGNIVA-IRP------- 64 (325)
T ss_pred CCCEEEEECCHHCEEEE--ECCCC-EECCC------CEEEEEECCCCEEEEEHHHHHHHCCCCCCCEEE-EEE-------
T ss_conf 87744899860258999--87998-79878------849999889997998659999854479987899-995-------
Q ss_pred CHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 26787652019869997599827999579587199999999999999999983884733698537788740257886344
Q gi|255764494|r 79 DSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAG 158 (652)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa 158 (652)
.....+++.++++.+|++++..+....+....++|||||+||++.||+||++||
T Consensus 65 --------------------------l~~g~i~d~e~~~~~L~~l~~~~~~~~~~~~~~vVItVPa~f~~~qR~At~~Aa 118 (325)
T PRK13928 65 --------------------------LRDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPSGITSVEKRAVRDAA 118 (325)
T ss_pred --------------------------CCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf --------------------------689766367888998999999973023579981999979799999999999999
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 21122222222102478888603445655079987244114543101023146542013322455213447665536787
Q gi|255764494|r 159 RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT 238 (652)
Q Consensus 159 ~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~ 238 (652)
++||+++++|||||||||++||++...+..+||||||||||||||+++.+ +.+.++.+|||+|||++|++|+.++
T Consensus 119 ~~AGl~~v~li~EPtAAAl~~Gl~~~~~~~~lV~DlGGGT~Dvsvl~~g~-----iv~~~~~~lGG~dfD~~I~~~l~~~ 193 (325)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDIFQPSGNMVVDIGGGTTDIAVLSLGG-----IVTSSSIKVAGDKFDEAIIKYIRKK 193 (325)
T ss_pred HHCCCCEEEEECCHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECC-----EEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 98699879996556999998487756887359999589837899999788-----5886772226805688999999986
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC----CEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHC
Q ss_conf 642013430244789999999999885411556----5035863044346788721268731100001234200001100
Q gi|255764494|r 239 FKKENGIDLKQDTLALQRLKEAAEKAKIELSST----SQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEP 314 (652)
Q Consensus 239 ~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~----~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~ 314 (652)
|+.. +. .+.+|++|+.|+.. .+..+.+. ..+...|...++.+||++|+++++++++++..+
T Consensus 194 ~~~~----i~---------~~~aE~~K~~l~~~~~~~~~~~~~v~--g~~~~~g~p~~~~it~~~~~~~~~~~~~~i~~~ 258 (325)
T PRK13928 194 YKLM----IG---------ERTAEEIKIKIGTAFPGAREEEMEIR--GRDLVTGLPRTITVTSEEIREALKEPVSAIVQA 258 (325)
T ss_pred HHHH----HH---------HHHHHHHHHHHHHHHHCCCCCEEEEE--ECCCCCCCCCEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 3110----12---------98999999998754315557626885--002356887439984699999999999999999
Q ss_pred CCCCCHHC--CCCCEEEEE-EEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 11110101--356311014-663078530567788654101111111356531011111000223
Q gi|255764494|r 315 CKKCLQDA--GLSPSDIDE-VVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGV 376 (652)
Q Consensus 315 i~~~L~~a--~~~~~~I~~-V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ 376 (652)
++++|+++ .+..+.++. |+|||||||||.|+++|+++||+++..+.|||+|||+|||+++..
T Consensus 259 i~~~Le~~~~el~~di~d~GIvLvGGssrip~v~~~l~~~~g~~~~~~~~P~~~Va~Gaai~~~~ 323 (325)
T PRK13928 259 VKSVLERTPPELSADIIDKGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLEN 323 (325)
T ss_pred HHHHHHHCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999728554412112694999875133267999999997839877898777999999999852
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=0 Score=441.74 Aligned_cols=312 Identities=24% Similarity=0.378 Sum_probs=239.4
Q ss_pred CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCC---EEECHHHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 98169980486606999998995599756898625627999948998---996678986333083511002067549868
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGE---RLVGQPAKRQAVTNPSNTIFAAKRLIGRRF 77 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~---~~vG~~A~~~~~~~p~~ti~~~KrliG~~~ 77 (652)
||+.||||||||||+|++. +.+ ++.|+ ||+|+|.+++. ..||+.|+.+..+.|.++. .+ |
T Consensus 7 ~~~~iGIDLGTtns~v~~~-~~g--iv~~e------PSvVa~~~~~~~~i~aVG~~Ak~~~gr~p~~i~-~i-r------ 69 (338)
T PRK13927 7 FSNDLGIDLGTANTLIYVK-GKG--IVLNE------PSVVAIRQDTGGKVLAVGSEAKQMLGRTPGNIV-AI-R------ 69 (338)
T ss_pred HCCEEEEECCHHCEEEEEC-CCC--EECCC------CCEEEEECCCCEEEEHHHHHHHHHCCCCCCCEE-EE-E------
T ss_conf 3662289766340899988-998--78568------808999838984876127999985458967279-99-8------
Q ss_pred CCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHH--HHHHCCCCCEEEEEECCCCCCCHHHHHH
Q ss_conf 72678765201986999759982799957958719999999999999999--9983884733698537788740257886
Q gi|255764494|r 78 NDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETA--ESFLGETVSKAVITVPAYFNDAQRQATK 155 (652)
Q Consensus 78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~a--e~~l~~~v~~~VitVP~~f~~~qR~a~~ 155 (652)
+..+|. .+.-+++..+|+++...+ +..+.....++|||||+||++.||+|++
T Consensus 70 -----------------pl~~Gv---------i~d~~~~~~~l~~li~~~~~~~~~~~~~~~vVItVPa~ft~~qR~A~~ 123 (338)
T PRK13927 70 -----------------PMKDGV---------IADFDVTEKMLKYFIKKVHKRRGFFRPSPRVVVCVPSGSTQVERRAVR 123 (338)
T ss_pred -----------------ECCCCC---------CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf -----------------767881---------045477899999999999740243479996999619999889999999
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 34421122222222102478888603445655079987244114543101023146542013322455213447665536
Q gi|255764494|r 156 DAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHI 235 (652)
Q Consensus 156 ~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~ 235 (652)
+||++||+++++||+||||||++||++..++..+||||+||||||+||+++.+ . .+.++.+|||+|||++|++|+
T Consensus 124 ~Aa~~AG~~~v~li~EP~AAAig~Gl~~~~~~g~lVvDlGGGT~Dvsvislgg-i----v~~~~~~lGG~d~D~aI~~~v 198 (338)
T PRK13927 124 ESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGG-I----VYSKSVRVGGDKFDEAIINYV 198 (338)
T ss_pred HHHHHCCCCEEEEECCHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCC-E----EEECCCCCHHHHHHHHHHHHH
T ss_conf 99997699869974437999987288857886369999589854676787288-7----860770203245889999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC----EEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHH
Q ss_conf 7876420134302447899999999998854115565----035863044346788721268731100001234200001
Q gi|255764494|r 236 CDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTS----QTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKT 311 (652)
Q Consensus 236 ~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~----~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~ 311 (652)
.++ |++.+.. ..||++|+.|++.. ...+.+. ..+...|...++.||+++|.+++.++++++
T Consensus 199 ~~~----~~l~i~~---------~tAE~iK~~l~sa~~~~~~~~~~v~--G~~~~~g~p~~~~it~~ei~~ai~~~l~~i 263 (338)
T PRK13927 199 RRN----YNLLIGE---------RTAERIKIEIGSAYPGDEVEEMEVR--GRDLVTGLPKTITISSNEIREALQEPLSAI 263 (338)
T ss_pred HHH----HCCCCCH---------HHHHHHHHHHHCCCCCCCCCEEEEE--CCCCCCCCCCEEEECHHHHHHHHHHHHHHH
T ss_conf 987----3744389---------9999999997304777777426984--543356888237525899999999999999
Q ss_pred HHCCCCCCHHCCCC-CEEE-E-EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 10011110101356-3110-1-466307853056778865410111111135653101111100022
Q gi|255764494|r 312 VEPCKKCLQDAGLS-PSDI-D-EVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAG 375 (652)
Q Consensus 312 ~~~i~~~L~~a~~~-~~~I-~-~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~ 375 (652)
.+.|+++|+++.-. ..|| + .|+|||||||+|.|+++|+++||.++....||++|||.||+++..
T Consensus 264 ~~~i~~~Le~~~pel~~Di~~~GIvLvGGss~ip~v~~~i~~~~g~~v~~~~~P~~~Va~GA~~~le 330 (338)
T PRK13927 264 VEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALE 330 (338)
T ss_pred HHHHHHHHHHCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999984886654333128789987401426699999999784970179867899998999986
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis . Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor . The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography . It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes .; GO: 0000902 cell morphogenesis.
Probab=99.98 E-value=9.8e-32 Score=259.14 Aligned_cols=310 Identities=26% Similarity=0.389 Sum_probs=229.9
Q ss_pred CCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCC-----C--EEECHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 816998048660699999899559975689862562799994899-----8--996678986333083511002067549
Q gi|255764494|r 2 SKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEG-----E--RLVGQPAKRQAVTNPSNTIFAAKRLIG 74 (652)
Q Consensus 2 s~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~-----~--~~vG~~A~~~~~~~p~~ti~~~KrliG 74 (652)
|.=|||||||-||.| |+++.+ ||+|| ||+|+...+. . .-||.+||.++-+.|.|.. .+
T Consensus 2 S~d~gIDLGTANTlV-yVkg~G--IVl~E------PSVVA~~~~~f~~~~~~v~AVG~~AK~MLGkTP~nI~-Ai----- 66 (337)
T TIGR00904 2 SSDIGIDLGTANTLV-YVKGRG--IVLNE------PSVVAIRTDRFDAKTKSVLAVGHEAKEMLGKTPGNIV-AI----- 66 (337)
T ss_pred CCCCCHHHCCCCEEE-EECCCE--EEEEC------CCEEEEEECCCCCCCCEEEEEEHHHHHHCCCCCCCCE-EE-----
T ss_conf 665200110303468-883502--79517------8458886043057542168850046530287988726-86-----
Q ss_pred CCCCCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHH---HHCCCCCEEEEEECCCCCCCHH
Q ss_conf 8687267876520198699975998279995795871999999999999999999---8388473369853778874025
Q gi|255764494|r 75 RRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAES---FLGETVSKAVITVPAYFNDAQR 151 (652)
Q Consensus 75 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~---~l~~~v~~~VitVP~~f~~~qR 151 (652)
.+.++|-.. . =+++...|+|..+.+-. ++. |--.+||.||.-.|+.+|
T Consensus 67 -------------------RPlKDGVIA------D---f~~Te~MlkYFI~~v~~rk~~~~-P~P~~~icVP~GiT~VEr 117 (337)
T TIGR00904 67 -------------------RPLKDGVIA------D---FEVTEKMLKYFIKKVHSRKSFFR-PKPRIVICVPSGITPVER 117 (337)
T ss_pred -------------------CCCCCCCCC------C---HHHHHHHHHHHHHHHHCCCCCCC-CCCEEEEEECCCCCHHHH
T ss_conf -------------------468885124------7---68999999999999856775368-987699985379986678
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 78863442112222222210247888860344565507998724411454310102314654201332245521344766
Q gi|255764494|r 152 QATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCL 231 (652)
Q Consensus 152 ~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l 231 (652)
+|+.+||.-||=.-+.||.||.|||+.=+|+-.++.--||+|+|||||+|+|+++.+=+ .+ . --..|||.||++|
T Consensus 118 RAV~esA~~AGAREV~lIEEPmAAAIGA~LPV~EP~GsMvvDIGGGTTEvaVISLgGiV---~S-~-SiRvgGDefDeaI 192 (337)
T TIGR00904 118 RAVKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIV---VS-R-SIRVGGDEFDEAI 192 (337)
T ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHCCCCCCCCCCCCEEEECCCCCEEEEEEECCCEE---EE-E-EEEECCCHHHHHH
T ss_conf 99999985079707886234137863587380467668789848872230021105456---76-5-4443143011688
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCE---EEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 553678764201343024478999999999988541155-650---3586304434678872126873110000123420
Q gi|255764494|r 232 VEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSS-TSQ---TEINLPFISANSAGAQHLNMKLTRAQFERLVNHL 307 (652)
Q Consensus 232 ~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~-~~~---~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l 307 (652)
.+|+... |++=+-+- .||+.|+.+-+ ... -.-.+|--..|...|..-+.+|+-.+.-+..++-
T Consensus 193 I~YiRr~----ynllIGe~---------TAE~IKieIGsA~~~~~~e~~~mEv~GrD~~~GlPr~~~i~s~ev~EaL~ep 259 (337)
T TIGR00904 193 INYIRRT----YNLLIGER---------TAERIKIEIGSAYPEENDEERKMEVRGRDLVTGLPRTIEINSVEVREALQEP 259 (337)
T ss_pred HHHHHHH----CCCCCCCH---------HHHHHHHHHCCEECCCCCCEEEEEEECCHHHCCCCCEEEECHHHHHHHHHHH
T ss_conf 9988864----38556712---------3888745444310167886003555011321127720577628999988736
Q ss_pred HHHHHHCCCCCCHHCCCCC-EEEE--EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 0001100111101013563-1101--4663078530567788654101111111356531011111000
Q gi|255764494|r 308 IQKTVEPCKKCLQDAGLSP-SDID--EVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQ 373 (652)
Q Consensus 308 ~~~~~~~i~~~L~~a~~~~-~~I~--~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~ 373 (652)
++.+.+.|+.+|++..=.. .||- +++|.||++.+-.+-+.|++..|-++..--||..|||+|+...
T Consensus 260 v~~IV~aVk~tLE~tPPELA~DIveRGiVLTGGGaLLrnLDk~lS~eTg~PV~~Ad~PL~cVA~G~G~~ 328 (337)
T TIGR00904 260 VNQIVEAVKSTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVALGTGKA 328 (337)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHCCEEEECCHHHHHCCCHHHHHHCCCCEEECCCCHHHHHHHHHHH
T ss_conf 889999999875168870465776469376263054521015877734863688687133587654289
No 25
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.96 E-value=3.7e-27 Score=224.42 Aligned_cols=315 Identities=25% Similarity=0.373 Sum_probs=227.6
Q ss_pred CCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECC--CC--EEECHHHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 81699804866069999989955997568986256279999489--98--996678986333083511002067549868
Q gi|255764494|r 2 SKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDE--GE--RLVGQPAKRQAVTNPSNTIFAAKRLIGRRF 77 (652)
Q Consensus 2 s~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~--~~--~~vG~~A~~~~~~~p~~ti~~~KrliG~~~ 77 (652)
|..+||||||-|+.|.+- +++ |++|+ ||+|++..+ .. ..+|.+|+.+.-+.|.|...
T Consensus 6 s~diGIDLGTanTlV~~k-~kg--IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~a---------- 66 (342)
T COG1077 6 SNDIGIDLGTANTLVYVK-GKG--IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVA---------- 66 (342)
T ss_pred CCCCEEEECCCCEEEEEC-CCE--EEECC------CEEEEEEECCCCCEEEEEHHHHHHHHCCCCCCCEE----------
T ss_conf 565225324672699971-863--78457------62899950599725998508889872559777168----------
Q ss_pred CCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCHHHHHHH
Q ss_conf 7267876520198699975998279995795871999999999999999999838-847336985377887402578863
Q gi|255764494|r 78 NDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLG-ETVSKAVITVPAYFNDAQRQATKD 156 (652)
Q Consensus 78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~-~~v~~~VitVP~~f~~~qR~a~~~ 156 (652)
+.+..+|.. .--+++..+|+++.+..-..-+ ...-.++|.||..-++.+|+|+++
T Consensus 67 ---------------iRPmkdGVI---------Ad~~~te~ml~~fi~~~~~~~~~~~~prI~i~vP~g~T~VErrAi~e 122 (342)
T COG1077 67 ---------------IRPMKDGVI---------ADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKE 122 (342)
T ss_pred ---------------EEECCCCEE---------ECHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf ---------------724677676---------43899999999999974357787788838997458865999999999
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 44211222222221024788886034456550799872441145431010231465420133224552134476655367
Q gi|255764494|r 157 AGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHIC 236 (652)
Q Consensus 157 Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~ 236 (652)
|++-||..-+-++.||.|||+.-+++-.++.--||+|+||||+|+.|+++.+= ..... -.+||+.||++|++|+.
T Consensus 123 a~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggi----v~~~S-irv~GD~~De~Ii~yvr 197 (342)
T COG1077 123 AAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGI----VSSSS-VRVGGDKMDEAIIVYVR 197 (342)
T ss_pred HHHHCCCCEEEEECCHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEEEECCE----EEEEE-EEEECCHHHHHHHHHHH
T ss_conf 99856475589724477887648970447778789993898366799996388----98756-99834224588999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-C--EE-EEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHH
Q ss_conf 87642013430244789999999999885411556-5--03-58630443467887212687311000012342000011
Q gi|255764494|r 237 DTFKKENGIDLKQDTLALQRLKEAAEKAKIELSST-S--QT-EINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTV 312 (652)
Q Consensus 237 ~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~-~--~~-~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~ 312 (652)
++ |++-+.+. .+|++|+..-.. . .. ...++--..+...|..-.++++-++..+..++.++++.
T Consensus 198 ~~----~nl~IGe~---------taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~e~v~~Iv 264 (342)
T COG1077 198 KK----YNLLIGER---------TAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIV 264 (342)
T ss_pred HH----HCEEECHH---------HHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 87----48103588---------999999873614466677640676872240468981588658999999999999999
Q ss_pred HCCCCCCHHCC--CCCEEEEE-EEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 00111101013--56311014-6630785305677886541011111113565310111110002234
Q gi|255764494|r 313 EPCKKCLQDAG--LSPSDIDE-VVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVL 377 (652)
Q Consensus 313 ~~i~~~L~~a~--~~~~~I~~-V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~l 377 (652)
+.++.+|+... |.++=++. ++|+||++.+-.+.+.+++..+.++...-+|..|||.|+......+
T Consensus 265 eair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~ 332 (342)
T COG1077 265 EAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEAL 332 (342)
T ss_pred HHHHHHHHHCCCHHCCCHHHCCEEEECCHHHHCCCHHHHHHCCCCEEEECCCHHHHHHHCCCHHHHHH
T ss_conf 99999986489210020665752894665875073076786059628988875889875233666666
No 26
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.76 E-value=5.7e-17 Score=147.26 Aligned_cols=321 Identities=17% Similarity=0.247 Sum_probs=186.7
Q ss_pred EEEEECCCCEEEEEEEE---CCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf 69980486606999998---995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMD---GKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS 80 (652)
Q Consensus 4 viGIDlGtt~s~va~~~---~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (652)
++|||+||+..++.+.+ +|.+.|+-- -..||- ++ .+| .++--++..+.. +..+...-+..|....+.
T Consensus 10 iv~lDIGsskI~~lv~~~~~~g~i~IiG~----g~~~S~-Gi-~kG-~I~di~~~~~sI---~~av~~aE~~ag~~I~~v 79 (420)
T PRK09472 10 VVGLEIGTAKVAALVGEVLPDGMVNIIGV----GSCPSR-GM-DKG-GVNDLESVVKCV---QRAIDQAELMADCQISSV 79 (420)
T ss_pred EEEEECCCCEEEEEEEEECCCCCEEEEEE----EEECCC-CC-CCC-EEECHHHHHHHH---HHHHHHHHHHHCCCCCEE
T ss_conf 99998677859999999858997899999----984258-73-187-897599999999---999999999719933369
Q ss_pred HHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC-C-----------
Q ss_conf 7876520198699975998279995795871999999999999999999838847336985377887-4-----------
Q gi|255764494|r 81 TVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFN-D----------- 148 (652)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~-~----------- 148 (652)
.+.-.-.+ +...+....+.+.++..+.++ +..+.+.|....-.+-..++=.+|..|. |
T Consensus 80 ~v~isg~~-----i~s~~~~~~~~i~~~eI~~~D-----i~~~~~~a~~~~~~~~~~ilh~ip~~y~iD~~~~i~nPiGm 149 (420)
T PRK09472 80 YLALSGKH-----ISCQNEIGMVPISEEEVTQED-----VENVVHTAKSVRVRDEHRILHVIPQEYAIDYQEGIKNPVGL 149 (420)
T ss_pred EEEECCCC-----EEEEEEEEEEECCCCEECHHH-----HHHHHHHHHHCCCCCCCEEEEEECCEEEEECCCCCCCCCCC
T ss_conf 99985775-----268986668956867763999-----99999986630379884489995517998476456897678
Q ss_pred ----------------CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-CCCEEEEEEECCCEEEEEEEEECCCEE
Q ss_conf ----------------025788634421122222222102478888603445-655079987244114543101023146
Q gi|255764494|r 149 ----------------AQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKK-DARTVIVFDFGGGTFDVSLLEMGDGVF 211 (652)
Q Consensus 149 ----------------~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~-~~~~vlV~D~Gggt~dvsi~~~~~~~~ 211 (652)
...+-+..+.+.|||++..++.+|.|+|.+ .+... .+..++++||||||+|++| |.+|.+
T Consensus 150 ~g~~Le~~~~iI~~~~~~~~Nl~~~v~~~gl~v~~~v~~~lAsa~a-vLt~~Eke~Gv~lIDiG~gtT~iav--f~~g~l 226 (420)
T PRK09472 150 SGVRMQAKVHLITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYA-VLTEDERELGVCVVDIGGGTMDIAV--YTGGAL 226 (420)
T ss_pred CCCEEEEEEEEEEEEHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHH-CCCHHHHHHCCEEEEECCCEEEEEE--EECCEE
T ss_conf 7462453579998507899999999997496420144517777652-4899899619589980898388999--979989
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC----C--CCEEEEEECCCCCCC
Q ss_conf 5420133224552134476655367876420134302447899999999998854115----5--650358630443467
Q gi|255764494|r 212 EVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELS----S--TSQTEINLPFISANS 285 (652)
Q Consensus 212 ~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS----~--~~~~~i~i~~~~~~~ 285 (652)
.-.+ --.+||++|++-|+.-|. + -+..||++|+... . ...-.+.++.+...
T Consensus 227 ~~~~---~ipiGG~~IT~DIa~~L~--------i-----------~~~~AE~lK~~~G~a~~~~~~~~e~i~i~~~~~~- 283 (420)
T PRK09472 227 RHTK---VIPYAGNVVTSDIAYAFG--------T-----------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR- 283 (420)
T ss_pred EEEE---EECCHHHHHHHHHHHHHC--------C-----------CHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCC-
T ss_conf 9997---532428899999998849--------8-----------9999999999839555454787766873678998-
Q ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCC-------HHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 8872126873110000123420000110011110-------101356311014663078530567788654101111111
Q gi|255764494|r 286 AGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCL-------QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSK 358 (652)
Q Consensus 286 ~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L-------~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~ 358 (652)
. ...++|..+.+++++-++.+++.|++.+ +++++...--..|+|+||+|++|.+.++.++.|+.++..
T Consensus 284 ----~-~~~i~~~~l~~II~aR~eEIl~~v~~~i~~~~~~l~~~g~~~~l~~GiVLTGG~s~l~Gi~ela~~if~~~VRi 358 (420)
T PRK09472 284 ----P-PRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRI 358 (420)
T ss_pred ----C-CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHCCCHHHHHHHHHCCCCEE
T ss_conf ----7-65074999999999999999999999999988787765630025875899791540768899999996898189
Q ss_pred ------------CCCCCCHHHHHHHHCCC
Q ss_conf ------------35653101111100022
Q gi|255764494|r 359 ------------GVNPDEVVAMGAAIQAG 375 (652)
Q Consensus 359 ------------~~npdeaVa~GAA~~a~ 375 (652)
--||..|.|.|-.+||+
T Consensus 359 g~P~~~~gl~~~~~~P~~at~~GLl~y~~ 387 (420)
T PRK09472 359 GAPLNITGLTDYAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred ECCCCCCCCHHHCCCCHHHHHHHHHHHHH
T ss_conf 65876688544337949899999999987
No 27
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.72 E-value=1.3e-15 Score=137.01 Aligned_cols=300 Identities=24% Similarity=0.387 Sum_probs=187.1
Q ss_pred CEEEEECCCCEEEEEE--EECC-EEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 1699804866069999--9899-559975689862562799994899899667898633308351100206754986872
Q gi|255764494|r 3 KVIGIDLGTTNSCVAI--MDGK-NVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFND 79 (652)
Q Consensus 3 ~viGIDlGtt~s~va~--~~~~-~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 79 (652)
-++|+|+||+..++.+ ..++ ...++-- | ..||-- . ++| ..+--.|..+.. +.++....++-|...++
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~--g--~~~SrG-i-k~G-~I~di~~~~~sI---~~av~~AE~mag~~i~~ 76 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGV--G--SHPSRG-I-KKG-VIVDLDAAAQSI---KKAVEAAERMAGCEIKS 76 (418)
T ss_pred EEEEEECCCCEEEEEEEEECCCCEEEEEEE--E--CCCCCC-C-CCC-EEECHHHHHHHH---HHHHHHHHHHCCCCCCE
T ss_conf 499997267479999999847986999975--5--166766-1-364-177589999999---99999999862997126
Q ss_pred HHHHHHHHCCCEEEEECCCCEEEEEECC-EEECHHHHHHHHHHHHHHHHHHHHCCCCCEE--------------------
Q ss_conf 6787652019869997599827999579-5871999999999999999999838847336--------------------
Q gi|255764494|r 80 STVAKDASLVPFKIVEGKGGDAWIEAQG-KQYSPSQISAIVLQKMKETAESFLGETVSKA-------------------- 138 (652)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~peei~a~iL~~lk~~ae~~l~~~v~~~-------------------- 138 (652)
..+.-.-.+ ....+....+.+.+ +..+.+++- ++.+.|......+-..+
T Consensus 77 v~vs~sG~~-----i~s~~~~g~v~i~~~~eIt~~DI~-----rvl~~A~~~~~~~~~~ilh~~p~~y~vD~~~~I~dP~ 146 (418)
T COG0849 77 VIVSLSGNH-----IKSQNVNGEVSISEEKEITQEDIE-----RVLEAAKAVAIPPEREILHVIPQEYIVDGQEGIKDPL 146 (418)
T ss_pred EEEEECCCE-----EEEEEEEEEEECCCCCCCCHHHHH-----HHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCC
T ss_conf 999932560-----678766899975987704899999-----9999987641688816889951388997856668953
Q ss_pred ------------EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC-CCEEEEEEECCCEEEEEEEE
Q ss_conf ------------98537788740257886344211222222221024788886034456-55079987244114543101
Q gi|255764494|r 139 ------------VITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKD-ARTVIVFDFGGGTFDVSLLE 205 (652)
Q Consensus 139 ------------VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~-~~~vlV~D~Gggt~dvsi~~ 205 (652)
++|+|..+- +-+..+.+.|||++..++-+|-|+|.+ .+...+ +-.++++||||||+|+++
T Consensus 147 gm~G~rL~v~vhvit~~~~~~----~Nl~k~v~r~gl~v~~i~l~plAsa~a-~L~~dEkelGv~lIDiG~GTTdIai-- 219 (418)
T COG0849 147 GMSGVRLEVEVHVITGPKNIL----ENLEKCVERAGLKVDNIVLEPLASALA-VLTEDEKELGVALIDIGGGTTDIAI-- 219 (418)
T ss_pred CCCCCEEEEEEEEEECCHHHH----HHHHHHHHHHCCCEEEEEEEHHHHHHH-CCCCCCHHCCEEEEEECCCCEEEEE--
T ss_conf 465336999999998144899----999999999499740189744544050-0682447409399994899179999--
Q ss_pred ECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC------CCEEEEEEC
Q ss_conf 02314654201332245521344766553678764201343024478999999999988541155------650358630
Q gi|255764494|r 206 MGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSS------TSQTEINLP 279 (652)
Q Consensus 206 ~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~------~~~~~i~i~ 279 (652)
+.+|.+.- .+--.+||++++..|+.-|. .+ +..||+.|+..-+ .....++++
T Consensus 220 ~~~G~l~~---~~~ipvgG~~vT~DIa~~l~--------t~-----------~~~AE~iK~~~g~a~~~~~~~~~~i~v~ 277 (418)
T COG0849 220 YKNGALRY---TGVIPVGGDHVTKDIAKGLK--------TP-----------FEEAERIKIKYGSALISLADDEETIEVP 277 (418)
T ss_pred EECCEEEE---EEEEEECCCHHHHHHHHHHC--------CC-----------HHHHHHHHHHCCCCCCCCCCCCCEEECC
T ss_conf 98999999---70483073078899987759--------89-----------8899999997086455767876368635
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 443467887212687311000012342000011001111010135631101466307853056778865410111111
Q gi|255764494|r 280 FISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPS 357 (652)
Q Consensus 280 ~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~ 357 (652)
.... +...++||..+..++++.+..++..++..|.++++...-...|+|+||++.+|.+.+..++.|+.++.
T Consensus 278 ~vg~------~~~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vR 349 (418)
T COG0849 278 SVGS------DIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVR 349 (418)
T ss_pred CCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCHHHHHHHHCCCCEE
T ss_conf 5787------65213009999999986379999999999987476545887399877443173689999986478608
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein; InterPro: IPR013366 Salmonella typhimurium is capable of growth on ethanolamine as a sole source of carbon nitrogen and energy . During growth on this compound the cells form a multimolecular structure known as a metabolosome, which is similar to the carboxysome used by some photosynthetic bacteria to fix CO2, and is thought to contain the enzymes needed to metabolise this compound to acetyl-CoA. The metabolosome is not directly involved in the biochemistry of ethanolamine utilization - instead its role is thought to be to concentrate the enzymes involved in this process, while also protecting the cell from the build-up of toxic intermediates . The genes involved in growth on ethanolamine are encoded in a 17-gene operon known as the ethanolamine utilization (eut) operon. EutJ shows similarity to chaperonins and may play a role in assembly of the metabolosme , though it is not necessary for growth on this compound..
Probab=99.64 E-value=9.3e-16 Score=138.10 Aligned_cols=192 Identities=26% Similarity=0.421 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCC
Q ss_conf 99999999999983884733698537788740257886344211222222221024788886034456550799872441
Q gi|255764494|r 118 IVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGG 197 (652)
Q Consensus 118 ~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Ggg 197 (652)
.+-++||+..|+.||-.++++-++||+--.+...+...+--+.|||+++..++||||||-. |+- ++=.|+|+|||
T Consensus 44 ~iV~rLK~~lE~klG~~lt~A~~A~PPGt~~~~~k~~vNV~EsAG~eV~~V~DEPTAAa~v--L~i---~nG~VVDvGGG 118 (240)
T TIGR02529 44 EIVKRLKDKLEKKLGIELTHAATAVPPGTEEGDVKVIVNVVESAGIEVLKVLDEPTAAAAV--LQI---KNGAVVDVGGG 118 (240)
T ss_pred HHHHHHHHHHHHHHCCEEEECCEECCCCCCCCCEEEEEEEEECCCEEEEEEECCHHHHHHH--HCC---CCCEEEEECCC
T ss_conf 8999999888888094564131500897588975899998722561576651427899987--288---57279984788
Q ss_pred EEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 14543101023146542013322455213447665536787642013430244789999999999885411556503586
Q gi|255764494|r 198 TFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEIN 277 (652)
Q Consensus 198 t~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~ 277 (652)
||=+||+ ++|...- + -|.-=||.+|...|+- .|++++. +||..|+.= ..+.++
T Consensus 119 TTGiSI~--K~GKViy--~-ADEpTGGtHm~LV~AG--------~ygi~~E-----------EAEe~K~~~--k~e~E~- 171 (240)
T TIGR02529 119 TTGISIL--KKGKVIY--S-ADEPTGGTHMSLVLAG--------AYGISFE-----------EAEEIKRDK--KKEEEV- 171 (240)
T ss_pred CEEEEEE--ECCCEEE--E-EECCCCCCCEEEEEEE--------CCCCCHH-----------HHHHHHHCC--CCCEEE-
T ss_conf 0335799--7596899--8-2379998615678861--------2688888-----------988786305--884378-
Q ss_pred ECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCC-CCCC
Q ss_conf 304434678872126873110000123420000110011110101356311014663078530567788654101-1111
Q gi|255764494|r 278 LPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFF-NKSP 356 (652)
Q Consensus 278 i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~f-g~~~ 356 (652)
| ..+.|.++|+-+++++=|+..+ +..|.||||+|..+-+.+.+++.| |.++
T Consensus 172 -------------F----------~~v~PV~qKmA~Iv~~hi~~~~-----v~~~yLVGGac~~~~f~~~F~k~~Pg~~v 223 (240)
T TIGR02529 172 -------------F----------SVVKPVVQKMASIVKKHIEGQK-----VKDLYLVGGACSFSGFEDVFEKELPGLNV 223 (240)
T ss_pred -------------E----------EEECCHHHHHHHHHHHHHCCCC-----CCEEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf -------------8----------7604137778999999851188-----33689824400522467888764278762
Q ss_pred CCCCCCCCHHHHH
Q ss_conf 1135653101111
Q gi|255764494|r 357 SKGVNPDEVVAMG 369 (652)
Q Consensus 357 ~~~~npdeaVa~G 369 (652)
.++.+|-..-=+|
T Consensus 224 ~~P~~P~~vTPLG 236 (240)
T TIGR02529 224 IKPAEPLYVTPLG 236 (240)
T ss_pred CCCCCCEEECHHH
T ss_conf 1689873454133
No 29
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.31 E-value=9.5e-11 Score=100.13 Aligned_cols=303 Identities=18% Similarity=0.202 Sum_probs=159.3
Q ss_pred EEEECCCCEEEEEEEECCEEE-EEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHH
Q ss_conf 998048660699999899559-9756898625627999948998996678986333083511002067549868726787
Q gi|255764494|r 5 IGIDLGTTNSCVAIMDGKNVR-VIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTVA 83 (652)
Q Consensus 5 iGIDlGtt~s~va~~~~~~~~-ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~ 83 (652)
|=||+|+.++++++.....|. ++++.-|++.......-....+.++|.++......+. .+
T Consensus 2 vViD~GS~~~r~G~age~~P~~~ips~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~-------------- 62 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGL-----EL-------------- 62 (371)
T ss_pred EEEECCCCEEEEEECCCCCCCEEECCEEEEECCCCCCCCCCCCCEEECCHHHHCCCCCC-----EE--------------
T ss_conf 89979998599877989998789857379988766556777786587626874678772-----68--------------
Q ss_pred HHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCHHHHHHHHH-HH
Q ss_conf 652019869997599827999579587199999999999999999983884--733698537788740257886344-21
Q gi|255764494|r 84 KDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGET--VSKAVITVPAYFNDAQRQATKDAG-RI 160 (652)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~--v~~~VitVP~~f~~~qR~a~~~Aa-~~ 160 (652)
.+|+ .+| ..... +....++.++.. +++..+ -..+++|.|++++..+|+.+.+.. +-
T Consensus 63 ----~~p~-----~~G--------~i~d~-d~~e~~~~~~~~---~~l~~~~~~~~vll~ep~~~~~~~r~~~~e~lFE~ 121 (371)
T cd00012 63 ----IYPI-----EHG--------IVVDW-DDMEKIWDHLFF---NELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFET 121 (371)
T ss_pred ----ECCC-----CCC--------EECCH-HHHHHHHHHHHH---HCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf ----3775-----178--------65689-999999999964---01688855584477548999899999999999976
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 12222222210247888860344565507998724411454310102314654201332245521344766553678764
Q gi|255764494|r 161 AGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK 240 (652)
Q Consensus 161 AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~ 240 (652)
-|+.-+.++.+|.+|++++|. .+-+|+|+|++.+.|+-+ .+|.. +..+.-...+||++++..|.+.+...
T Consensus 122 ~~vp~v~~~~~~~la~y~~g~-----~tglVVDiG~~~T~v~pV--~dG~~-~~~~~~~~~~gG~~l~~~l~~~l~~~-- 191 (371)
T cd00012 122 FNVPALYVAIQAVLSLYASGR-----TTGLVVDSGDGVTHVVPV--YDGYV-LPHAIKRLDLAGRDLTRYLKELLRER-- 191 (371)
T ss_pred CCCCEEEEECHHHHHHHHCCC-----CEEEEEECCCCCEEEEEE--ECCEE-CHHHEEEEECHHHHHHHHHHHHHHHC--
T ss_conf 699879996505442565499-----628999879994688876--66698-12252998363999999999999973--
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-----------------EEEEEECCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 20134302447899999999998854115565-----------------0358630443467887212687311000012
Q gi|255764494|r 241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTS-----------------QTEINLPFISANSAGAQHLNMKLTRAQFERL 303 (652)
Q Consensus 241 ~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~-----------------~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l 303 (652)
.+..+...+. ..++..|+.++... ...+.+ .+|.. +.+..+.| .+
T Consensus 192 -~~~~~~~~~~-------~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~l-------Pdg~~--i~~~~er~-~~ 253 (371)
T cd00012 192 -GYELNSSDER-------EIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYEL-------PDGRT--IKVGNERF-RA 253 (371)
T ss_pred -CCCCCCHHHH-------HHHHHHHHHCCEECCCHHHHHHHHCCCCCCCCCEEEC-------CCCCE--EEECCHHH-HC
T ss_conf -9998836779-------9999998752321587788886521377767541688-------99978--87373364-18
Q ss_pred CCCCHH---------HHHHCCCCCCHHCC--CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCC-C---------CCCCCC
Q ss_conf 342000---------01100111101013--56311014663078530567788654101111-1---------113565
Q gi|255764494|r 304 VNHLIQ---------KTVEPCKKCLQDAG--LSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKS-P---------SKGVNP 362 (652)
Q Consensus 304 ~~~l~~---------~~~~~i~~~L~~a~--~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~-~---------~~~~np 362 (652)
++.+++ .+.+.|.+++..+. +.+.-...|+|+||+|++|.+.++|...+... + ...-++
T Consensus 254 ~E~lF~P~~~~~~~~gl~~~i~~si~~~~~d~r~~L~~nIvl~GG~S~~~G~~~RL~~eL~~~~p~~~~~~v~~~~~~~~ 333 (371)
T cd00012 254 PEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPER 333 (371)
T ss_pred HHHHCCHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC
T ss_conf 36418943458866778999999998599999987772889955313673789999999996588767824875789988
Q ss_pred CCHHHHHHHHCCC
Q ss_conf 3101111100022
Q gi|255764494|r 363 DEVVAMGAAIQAG 375 (652)
Q Consensus 363 deaVa~GAA~~a~ 375 (652)
..++=+||++.|.
T Consensus 334 ~~~aW~GgSilas 346 (371)
T cd00012 334 KYSVWLGGSILAS 346 (371)
T ss_pred CEEEEHHHHHHHC
T ss_conf 8488430788777
No 30
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.28 E-value=1.2e-09 Score=91.66 Aligned_cols=296 Identities=18% Similarity=0.205 Sum_probs=155.2
Q ss_pred CEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECC--------CCEEECHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 1699804866069999989955997568986256279999489--------98996678986333083511002067549
Q gi|255764494|r 3 KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDE--------GERLVGQPAKRQAVTNPSNTIFAAKRLIG 74 (652)
Q Consensus 3 ~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~--------~~~~vG~~A~~~~~~~p~~ti~~~KrliG 74 (652)
++|=||+|+.++++++..+..|.++ +||+|+.... ...++|..|.... . ...+
T Consensus 2 pavViD~Gs~~~r~G~ag~~~P~~i--------~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~----- 62 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR--G----GLEL----- 62 (373)
T ss_pred CEEEEECCCCEEEEEECCCCCCCEE--------ECCEEEEECCCCCCCCCCCCEEECHHHHHHC--C----CCEE-----
T ss_conf 8299989998599847989987599--------7565489877666657886568764677516--7----8658-----
Q ss_pred CCCCCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCHHH
Q ss_conf 868726787652019869997599827999579587199999999999999999983884--733698537788740257
Q gi|255764494|r 75 RRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGET--VSKAVITVPAYFNDAQRQ 152 (652)
Q Consensus 75 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~--v~~~VitVP~~f~~~qR~ 152 (652)
..|+ .+|.+ .. -+..-.++.++.. ++++.. -..+++|.|++.....|+
T Consensus 63 -------------~~p~-----~~G~i--------~d-~d~~e~i~~~~~~---~~l~~~~~~~pvlltep~~~~~~~r~ 112 (373)
T smart00268 63 -------------KYPI-----EHGIV--------EN-WDDMEKIWDYTFF---NELRVEPEEHPVLLTEPPMNPKSNRE 112 (373)
T ss_pred -------------CCCC-----CCCEE--------CC-HHHHHHHHHHHHH---HHCCCCCCCCCEEEECCCCCCHHHHH
T ss_conf -------------6722-----36986--------78-9999999999978---75088966784477427999999999
Q ss_pred HHHHHH-HHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 886344-2112222222210247888860344565507998724411454310102314654201332245521344766
Q gi|255764494|r 153 ATKDAG-RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCL 231 (652)
Q Consensus 153 a~~~Aa-~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l 231 (652)
.+.+-+ +-.++.-+.+..+|.+|++++|. .+-+|+|+|++.+.|+-+ .+|.. +..+.-...+||+++++.|
T Consensus 113 ~~~e~lFE~~~vp~~~~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV--~dG~~-~~~~~~~~~~gG~~l~~~l 184 (373)
T smart00268 113 KILEIMFETFNFPALYIAIQAVLSLYASGR-----TTGLVIDSGDGVTHVVPV--VDGYV-LPHAIKRIDIAGRDLTDYL 184 (373)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHCCC-----CEEEEEECCCCCEEEEEE--ECCEE-EHHHEEEEECCHHHHHHHH
T ss_conf 999999876699869997517666654389-----429999769994689986--89898-2112499977699999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-------------------CEEEEEECCCCCCCCCCCEEE
Q ss_conf 5536787642013430244789999999999885411556-------------------503586304434678872126
Q gi|255764494|r 232 VEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSST-------------------SQTEINLPFISANSAGAQHLN 292 (652)
Q Consensus 232 ~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~-------------------~~~~i~i~~~~~~~~~g~d~~ 292 (652)
.+.+.... +..+...+. .-.+.+|+.++.- ......+ .+|..+.
T Consensus 185 ~~~l~~~~---~~~~~~~~~-------~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l-------Pdg~~i~ 247 (373)
T smart00268 185 KELLSERG---YQFNSSAEF-------EIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYEL-------PDGNTIK 247 (373)
T ss_pred HHHHHHCC---CCCCCHHHH-------HHHHHHHHHCEEECCCHHHHHHHHHHHCCCCCCCCEEEC-------CCCCEEE
T ss_conf 99998639---998736689-------999997653016528668898776440236677420189-------7996897
Q ss_pred EEECCCCCCCCCCCCHH---------HHHHCCCCCCHHCCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCC------
Q ss_conf 87311000012342000---------011001111010135--6311014663078530567788654101111------
Q gi|255764494|r 293 MKLTRAQFERLVNHLIQ---------KTVEPCKKCLQDAGL--SPSDIDEVVLVGGMTRMPKIQQSVQDFFNKS------ 355 (652)
Q Consensus 293 ~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~~--~~~~I~~V~lvGGssriP~v~~~i~~~fg~~------ 355 (652)
+..+.| ...+.+++ .+.+.|.+++..+.. .+.-...|+|+||+|++|.+.+.|.+.+..-
T Consensus 248 --~~~er~-~~~E~lF~p~~~~~~~~gl~~~i~~si~~~~~d~r~~l~~nIil~GG~s~~~G~~~RL~~eL~~~~p~~~~ 324 (373)
T smart00268 248 --VGNERF-RIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLK 324 (373)
T ss_pred --ECCHHH-HCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf --260453-27286449520235679879999999985999999978738799453136857899999999966899853
Q ss_pred --CCCCCCCCCHHHHHHHHCCC
Q ss_conf --11135653101111100022
Q gi|255764494|r 356 --PSKGVNPDEVVAMGAAIQAG 375 (652)
Q Consensus 356 --~~~~~npdeaVa~GAA~~a~ 375 (652)
+....++.-++=.||++.|.
T Consensus 325 ~~v~~~~~~~~~aW~GgSilas 346 (373)
T smart00268 325 VKVIAPPERKYSVWLGGSILAS 346 (373)
T ss_pred EEEECCCCCCEEEEHHHHHHHC
T ss_conf 8993599888127340657235
No 31
>PTZ00004 actin; Provisional
Probab=99.24 E-value=1.2e-09 Score=91.67 Aligned_cols=307 Identities=15% Similarity=0.160 Sum_probs=153.5
Q ss_pred EEEEECCCCEEEEEEEECCEEEE-EECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHH
Q ss_conf 69980486606999998995599-75689862562799994899899667898633308351100206754986872678
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNVRV-IENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTV 82 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~~i-i~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 82 (652)
.|=||+|+.++++++.....|.+ +++--|+...+....=...+..++|..|.... . ...++
T Consensus 8 aiViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~-----~-~~~~~------------ 69 (375)
T PTZ00004 8 ALVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPQVMVGMAEKDIFVGDEAQSKR-----G-ILTLK------------ 69 (375)
T ss_pred EEEEECCCCEEEEEECCCCCCCEEECCCCEEECCCCCCCCCCCCCEEECHHHHHHC-----C-CCEEC------------
T ss_conf 29999999839987798998877861733026763435686567657462776306-----7-62560------------
Q ss_pred HHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCHHHHHHHH-HH
Q ss_conf 7652019869997599827999579587199999999999999999983884--73369853778874025788634-42
Q gi|255764494|r 83 AKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGET--VSKAVITVPAYFNDAQRQATKDA-GR 159 (652)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~--v~~~VitVP~~f~~~qR~a~~~A-a~ 159 (652)
+|+ .+| ....- +..-.++.++. .+.++.. -..++||-|++-...+|+.+.+- -+
T Consensus 70 ------~p~-----~~g--------~i~d~-d~~e~~~~~~~---~~~L~v~~~e~pvlltE~~~~~~~~r~~~~e~lFE 126 (375)
T PTZ00004 70 ------YPI-----EHG--------IVTNW-DDMEKIWHHTF---YNELRVNPEEHPVLLTEAPMNPKQNREKMTQIMFE 126 (375)
T ss_pred ------CCC-----CCC--------EECCH-HHHHHHHHHHH---HHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf ------577-----589--------67589-99999999996---42148896548559961788878999999999874
Q ss_pred HCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11222222221024788886034456550799872441145431010231465420133224552134476655367876
Q gi|255764494|r 160 IAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTF 239 (652)
Q Consensus 160 ~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~ 239 (652)
.-++.-+.+...|..+++++|. .+-+|+|+|++.+.|+- +-+|..- ....-..++||+++++.|.+.+.+.
T Consensus 127 ~~~vp~~~~~~~~~ls~ya~g~-----~tglVVDiG~~~t~v~P--V~dG~~~-~~~~~~~~~gG~~lt~~l~~ll~~~- 197 (375)
T PTZ00004 127 TFNVPAMYVSIQAVLSLYSSGR-----TTGIVLDSGDGVTHTVP--IYEGYSL-PHAIMRLDMAGRDLTEYLMKILMER- 197 (375)
T ss_pred CCCCCCEEEECHHHHHHHHCCC-----CEEEEEECCCCCEEEEE--EECCEEC-CHHEEEEECHHHHHHHHHHHHHHHC-
T ss_conf 0688827997537641331588-----41699985998368886--3677882-1241896260999999999999965-
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC-----------CCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCH
Q ss_conf 4201343024478999999999988541155-----------65035863044346788721268731100001234200
Q gi|255764494|r 240 KKENGIDLKQDTLALQRLKEAAEKAKIELSS-----------TSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLI 308 (652)
Q Consensus 240 ~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~-----------~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~ 308 (652)
.+..+...... ..+.+|+.++. +.......++.. .+|.. +.+..+.|. ..+.+|
T Consensus 198 --~~~~~~~~~~~-------~v~~iKe~~c~v~~d~~~~~~~~~~~~~~~~y~l---Pdg~~--i~~~~er~~-~~E~lF 262 (375)
T PTZ00004 198 --GHTFTTSAEKE-------IVRNIKEKLCYVALDFDEEMTNSEKSEIEEPYEL---PDGNI--ITVGNERFR-CPEVLF 262 (375)
T ss_pred --CCCCCCHHHHH-------HHHHHHHHEEEECCCHHHHHHHCCCCCCCCCEEC---CCCCE--EEECHHHHC-CCHHHC
T ss_conf --98887367899-------9998675501444687788753324656751699---99978--987757731-869771
Q ss_pred HH---------HHHCCCCCCHHCC--CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCC--------CCCCCCCCHHHHH
Q ss_conf 00---------1100111101013--563110146630785305677886541011111--------1135653101111
Q gi|255764494|r 309 QK---------TVEPCKKCLQDAG--LSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSP--------SKGVNPDEVVAMG 369 (652)
Q Consensus 309 ~~---------~~~~i~~~L~~a~--~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~--------~~~~npdeaVa~G 369 (652)
+. +.+.|.+++..+. +.+.-...|+|+||+|++|.+.++|...+..-. ...-++.-++=.|
T Consensus 263 ~P~~~g~~~~gl~~~i~~si~~~~~d~r~~L~~nIvl~GG~S~~~G~~~RL~~EL~~~~p~~~~v~v~~~~~r~~~aW~G 342 (375)
T PTZ00004 263 QPSLIGLEAPGIHETTFQSINKCDIDIRKDLYGNIVLSGGTTMFEGIGERLTKEISNLAPSSIKIKVVAPPERKYSVWIG 342 (375)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHH
T ss_conf 93325886775368999999869988999876488996542466368999999999768898348997489888315375
Q ss_pred HHHCCC
Q ss_conf 100022
Q gi|255764494|r 370 AAIQAG 375 (652)
Q Consensus 370 AA~~a~ 375 (652)
|++.|.
T Consensus 343 gSilas 348 (375)
T PTZ00004 343 GSILSS 348 (375)
T ss_pred HHHHHC
T ss_conf 899877
No 32
>pfam06406 StbA StbA protein. This family consists of several bacterial StbA plasmid stability proteins.
Probab=99.24 E-value=3.5e-10 Score=95.84 Aligned_cols=204 Identities=17% Similarity=0.253 Sum_probs=113.3
Q ss_pred CCCCCEEEEEECC--CCC-CCHHHHHHHHHHHCCC--------------CCCCCCCCHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 8847336985377--887-4025788634421122--------------2222221024788886034456550799872
Q gi|255764494|r 132 GETVSKAVITVPA--YFN-DAQRQATKDAGRIAGL--------------DVLRIINEPTAAALAYGLDKKDARTVIVFDF 194 (652)
Q Consensus 132 ~~~v~~~VitVP~--~f~-~~qR~a~~~Aa~~AGl--------------~v~~li~EptAAal~Y~~~~~~~~~vlV~D~ 194 (652)
+++| +.|+|-|. ||+ +.||+--.-+-+.+.| ..+.++.|+.||++..-.+..+....||+|+
T Consensus 93 ~~~V-~lvvgLPvseyy~~d~q~n~~nI~rK~~nl~~~v~l~~~~~f~I~~v~V~pEslpA~~d~l~~~~~~~s~LIVDi 171 (318)
T pfam06406 93 PQPV-DLVVTLPLSEYYDANNQPNEENIERKKANVMRPVELNGGDSFTIRSVSVMPESLPAGFSVLKDLDSFESLLIVDL 171 (318)
T ss_pred CCEE-EEEECCCHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 8705-899658469973753231488999999975060210787741577777850542567768874287673389980
Q ss_pred CCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 44114543101023146542013322455213447665536787642013430244789999999999885411556503
Q gi|255764494|r 195 GGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQT 274 (652)
Q Consensus 195 Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~ 274 (652)
||.|+|++++. ++.-.+-+..|++.+|--.+..++...+... ..+.+ +. +.. +-.|..+...---
T Consensus 172 GGtT~Dv~vv~--g~~~~~s~~~g~~~iGvs~v~~~v~~~L~~~-----~~~~s-~~-----iad--~~I~~r~d~~~l~ 236 (318)
T pfam06406 172 GGTTLDVAHVR--GQLEGISKIHGDSRIGVSLVTDAVKSALATA-----STRTS-SF-----IAD--ELIKHRHDNDYLK 236 (318)
T ss_pred CCCEEEEEEEC--CCCCCCCEEECCCCCCHHHHHHHHHHHHHHH-----CCCCC-HH-----HHH--HHHHHHHHHHHHH
T ss_conf 89468899982--6767544010479977689999999999873-----27751-24-----589--9999631255554
Q ss_pred EEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCC-
Q ss_conf 5863044346788721268731100001234200001100111101013563110146630785305677886541011-
Q gi|255764494|r 275 EINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN- 353 (652)
Q Consensus 275 ~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg- 353 (652)
. ...+. + ....-.+..++.++.+.+++ .+.|.+ ..++..|+||||++.+ +...|++.|+
T Consensus 237 ~-----~~~d~----~-~~~~V~~~i~~~~~~L~~~v----~~~l~~----~~~~~~V~lVGGGA~l--i~~air~a~~~ 296 (318)
T pfam06406 237 Q-----RINDE----D-KRDSVMNVINEAVKKLQERV----IRALSR----FSGYTHVMVVGGGAEL--IATAIKKATGV 296 (318)
T ss_pred H-----HCCCH----H-HHHHHHHHHHHHHHHHHHHH----HHHHHC----CCCCCEEEEECCCHHH--HHHHHHHHHCC
T ss_conf 4-----21771----4-77999999999999999999----999852----2787669998787899--89999998469
Q ss_pred --CCCCCCCCCCCHHHHHHH
Q ss_conf --111113565310111110
Q gi|255764494|r 354 --KSPSKGVNPDEVVAMGAA 371 (652)
Q Consensus 354 --~~~~~~~npdeaVa~GAA 371 (652)
..+...-+|.-|-|+|-+
T Consensus 297 p~~~i~~~d~PqFAnarGm~ 316 (318)
T pfam06406 297 PDAKFIMVDNPQFALVLGMA 316 (318)
T ss_pred CCCEEEECCCHHHHHHHHHH
T ss_conf 98808956980677877775
No 33
>pfam00022 Actin Actin.
Probab=99.22 E-value=1.7e-09 Score=90.57 Aligned_cols=279 Identities=19% Similarity=0.247 Sum_probs=147.9
Q ss_pred EEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCC----CEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 6998048660699999899559975689862562799994899----899667898633308351100206754986872
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEG----ERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFND 79 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~----~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 79 (652)
.|=||+|+.++++++.....|.++ +||+|+-..+. +..+|..+... .+. ..+
T Consensus 5 ~vViD~Gs~~~K~G~age~~P~~v--------~ps~vg~~~~~~~~~~~~~g~~~~~~---~~~---~~~---------- 60 (369)
T pfam00022 5 ALVIDNGSGTTKAGFAGEDAPRAV--------IPSVVGRPRGRGVMVKYYVGDEAQSK---RPG---LEV---------- 60 (369)
T ss_pred CEEEECCCCEEEEEECCCCCCCEE--------ECCEEEEECCCCCCCCEEECHHHHCC---CCC---CEE----------
T ss_conf 699999998499847989988778--------81724788898865560468188623---677---378----------
Q ss_pred HHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCHHHHHHHH
Q ss_conf 6787652019869997599827999579587199999999999999999983884--73369853778874025788634
Q gi|255764494|r 80 STVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGET--VSKAVITVPAYFNDAQRQATKDA 157 (652)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~--v~~~VitVP~~f~~~qR~a~~~A 157 (652)
..|+ .+ |..... +..-.++.++. .+.++.. -..++||-|++.+..+|+.+.+-
T Consensus 61 --------~~p~-----~~--------G~i~d~-d~~e~i~~~~~---~~~l~~~~~~~~vlltep~~~~~~~r~~~~ei 115 (369)
T pfam00022 61 --------RYPI-----ED--------GIVENW-DAMEKIWEHTF---FEELRVDPEEHPLLLTEPPLNPPANREKATEI 115 (369)
T ss_pred --------CCCC-----CC--------CEECCH-HHHHHHHHHHH---HHHCCCCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf --------0621-----16--------823689-99999999985---55228896558657863699989999999999
Q ss_pred H-HHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 4-211222222221024788886034456550799872441145431010231465420133224552134476655367
Q gi|255764494|r 158 G-RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHIC 236 (652)
Q Consensus 158 a-~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~ 236 (652)
. +--++.-+.+...|.+|++++|. .+-+|+|+|++.++|+- +-+|.. +....-..++||+++++.|.+.+.
T Consensus 116 lFE~~~vp~~~~~~~~~ls~y~~g~-----~tglVVDiG~~~T~v~p--V~eG~~-~~~~~~~~~~GG~~lt~~l~~~L~ 187 (369)
T pfam00022 116 MFETFGVPALYLAKQAVLSAYASGR-----TTGLVVDSGAGVTSVVP--VYEGYV-LQKAIRRSDLAGDDLTDYLRKLLS 187 (369)
T ss_pred HHHCCCCCEEEEECHHHHHHHHCCC-----CEEEEEECCCCCEEEEE--EECCEE-CHHHHEEEECHHHHHHHHHHHHHH
T ss_conf 9830699759997638666764488-----35999975999668887--568798-013516760749999999999998
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---EEE-------EEECCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 876420134302447899999999998854115565---035-------8630443467887212687311000012342
Q gi|255764494|r 237 DTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTS---QTE-------INLPFISANSAGAQHLNMKLTRAQFERLVNH 306 (652)
Q Consensus 237 ~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~---~~~-------i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~ 306 (652)
.. +...+.+.... ....+..|+.++... ... ...++. ..+|.. +.+..+.| ...+.
T Consensus 188 ~~-----~~~~~~~~~~~---~~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~y~---LPDG~~--i~~~~er~-~~~E~ 253 (369)
T pfam00022 188 SR-----GYVDSFNTYAE---EEVVRDIKESLCYVSDDPFGDTAASSSPPTVSYE---LPDGSV--IILGNERF-RVPEI 253 (369)
T ss_pred HC-----CCCCCCCCHHH---HHHHHHHHHHEEECCCCHHHHHHHCCCCCCCEEE---CCCCEE--EEECHHHH-CCCHH
T ss_conf 55-----99766640778---9999999887142159867887534688773388---999859--87153663-08175
Q ss_pred CHH---------HHHHCCCCCCHHCCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 000---------011001111010135--63110146630785305677886541011
Q gi|255764494|r 307 LIQ---------KTVEPCKKCLQDAGL--SPSDIDEVVLVGGMTRMPKIQQSVQDFFN 353 (652)
Q Consensus 307 l~~---------~~~~~i~~~L~~a~~--~~~~I~~V~lvGGssriP~v~~~i~~~fg 353 (652)
+|+ .+.+.|.+++..+.. .+.-...|+|+||+|++|.+.++|+..+.
T Consensus 254 lF~P~~~~~~~~gl~~~i~~si~~~~~d~r~~l~~nIvl~GG~S~~~Gf~~RL~~el~ 311 (369)
T pfam00022 254 LFNPSLIGSESAGIPELIYDSINACDVDLRPSLLANIVVTGGTTLFPGFTERLEKELA 311 (369)
T ss_pred HCCCHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 3890222887899899999999859999999998270684564678578999999999
No 34
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.17 E-value=4.9e-11 Score=102.31 Aligned_cols=194 Identities=26% Similarity=0.379 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCE
Q ss_conf 99999999999838847336985377887402578863442112222222210247888860344565507998724411
Q gi|255764494|r 119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGT 198 (652)
Q Consensus 119 iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt 198 (652)
+.+++++.+|+.||-.++++--++|+---..-.++..+..+-||++++..++||||||.-.+++ .-.|+|+||||
T Consensus 77 iVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~-----dg~VVDiGGGT 151 (277)
T COG4820 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD-----DGGVVDIGGGT 151 (277)
T ss_pred HHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHCCC-----CCCEEEECCCC
T ss_conf 9999998898863937630234679986689842899842105823465247712677876267-----77279837984
Q ss_pred EEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 45431010231465420133224552134476655367876420134302447899999999998854115565035863
Q gi|255764494|r 199 FDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINL 278 (652)
Q Consensus 199 ~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i 278 (652)
+-+||++- |.+.- .-|.--||..+...|+-+ |++++. +||..|..- ....
T Consensus 152 TGIsi~kk--GkViy---~ADEpTGGtHmtLvlAG~--------ygi~~E-----------eAE~~Kr~~--k~~~---- 201 (277)
T COG4820 152 TGISIVKK--GKVIY---SADEPTGGTHMTLVLAGN--------YGISLE-----------EAEQYKRGH--KKGE---- 201 (277)
T ss_pred CEEEEEEC--CCEEE---ECCCCCCCEEEEEEEECC--------CCCCHH-----------HHHHHHHCC--CCCH----
T ss_conf 12699974--84799---614898962699997135--------686776-----------788764214--4520----
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 04434678872126873110000123420000110011110101356311014663078530567788654101111111
Q gi|255764494|r 279 PFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSK 358 (652)
Q Consensus 279 ~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~ 358 (652)
|.-..+.|.+++..+++.+-++..++ ..+.|+||+|.-|.+.+..++.|+-.+..
T Consensus 202 --------------------Eif~~v~PV~eKMAeIv~~hie~~~i-----~dl~lvGGac~~~g~e~~Fe~~l~l~v~~ 256 (277)
T COG4820 202 --------------------EIFPVVKPVYEKMAEIVARHIEGQGI-----TDLWLVGGACMQPGVEELFEKQLALQVHL 256 (277)
T ss_pred --------------------HCCCCHHHHHHHHHHHHHHHHCCCCC-----CCEEEECCCCCCCCHHHHHHHHHCCCCCC
T ss_conf --------------------11200207999999999998445887-----60588636326702799999874641136
Q ss_pred CCCCCCHHHHHHHH
Q ss_conf 35653101111100
Q gi|255764494|r 359 GVNPDEVVAMGAAI 372 (652)
Q Consensus 359 ~~npdeaVa~GAA~ 372 (652)
.-.|...--+|-|.
T Consensus 257 P~~p~y~TPLgIA~ 270 (277)
T COG4820 257 PQHPLYMTPLGIAS 270 (277)
T ss_pred CCCCCEECHHHHHH
T ss_conf 78840213145221
No 35
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.05 E-value=1.4e-08 Score=83.66 Aligned_cols=179 Identities=16% Similarity=0.256 Sum_probs=103.3
Q ss_pred CCCCCCCCHHHHHHHHHCCC------CCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 22222210247888860344------565507998724411454310102314654201332245521344766553678
Q gi|255764494|r 164 DVLRIINEPTAAALAYGLDK------KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICD 237 (652)
Q Consensus 164 ~v~~li~EptAAal~Y~~~~------~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~ 237 (652)
+-++++.-|.-|.+++-++. ..++++.|+|+|+||+|+.++.... ..+-++++- ..|=.++-.+|++++.+
T Consensus 155 ~~v~ViPQp~Gt~~~~~ld~~~~i~~l~~g~igIIDiG~gTTD~~v~~~~~-~~~~~s~t~--~~G~~~~y~~I~~~I~~ 231 (346)
T PRK13917 155 KGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMK-RVEEESFVI--NKGTIDFYKRIASHVSK 231 (346)
T ss_pred EEEEEECCCCHHHHHHHHCCCCCCHHHCCCCEEEEECCCCCEEEEEECCCE-ECCCCCCCC--HHHHHHHHHHHHHHHHH
T ss_conf 489998056047899885435441232168589997389837899861752-612102560--26899999999998642
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 76420134302447899999999998854115565035863044346788721268731100001234200001100111
Q gi|255764494|r 238 TFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKK 317 (652)
Q Consensus 238 ~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~ 317 (652)
+ .++..+. ..+|...++.-+...+.. .. .|++ ++++...+.+..++...|..
T Consensus 232 ~---~~~~~~~-----~~~l~~~~~~g~i~~~~~--~~-------------idi~-----~~v~~~~~~~a~~Iv~~i~~ 283 (346)
T PRK13917 232 K---SEGASIT-----PRMIEKGLEYKQCKLNQK--TV-------------IDFK-----DEFYKEQDSLIEEVMSNFEI 283 (346)
T ss_pred C---CCCCCCC-----HHHHHHHHHCCCEEECCC--CE-------------EEHH-----HHHHHHHHHHHHHHHHHHHH
T ss_conf 1---5788677-----999999986497687586--42-------------6558-----89999999999999999998
Q ss_pred CCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 10101356311014663078530567788654101111111356531011111000223467
Q gi|255764494|r 318 CLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG 379 (652)
Q Consensus 318 ~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~ 379 (652)
... ..+++|.|+++||++.. +++.+++.|+.-....-||..|.|+|=..+|.++-.
T Consensus 284 ~w~----~~~~~d~IiltGGGa~~--l~~~l~~~~~~v~~~~~d~qfANarGy~k~g~~~~~ 339 (346)
T PRK13917 284 TVG----NINSIDRIIVTGGGANI--HFDSLSHYYSDVFEKADDSQFSNVRGYEKLGELLKN 339 (346)
T ss_pred HHC----CHHHHCEEEEECCCHHH--HHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 737----71232279993784899--999999985543783678156799999999998764
No 36
>PTZ00280 actin; Provisional
Probab=99.01 E-value=5.7e-08 Score=79.11 Aligned_cols=298 Identities=21% Similarity=0.220 Sum_probs=140.8
Q ss_pred CC-CEEEEECCCCEEEEEEEECCEEE-EEECCCCCCCC-CE--EEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 98-16998048660699999899559-97568986256-27--9999489989966789863330835110020675498
Q gi|255764494|r 1 MS-KVIGIDLGTTNSCVAIMDGKNVR-VIENAEGTRTT-PS--MVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGR 75 (652)
Q Consensus 1 Ms-~viGIDlGtt~s~va~~~~~~~~-ii~n~~g~r~~-PS--~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~ 75 (652)
|+ ++|=||+|+.++++++.....|. ++++.-|.+.+ |. --.+ ++.+.++|+++..... ..+++
T Consensus 1 m~~paiViD~GS~~~KaG~aGed~P~~iips~~g~~~~~~~~~~~~~-~~~~~~ig~e~~~~~~------~~~~~----- 68 (416)
T PTZ00280 1 MSYPVVVIDNGTGYTKMGYAGNEEPTYIIPSTYADNETVRRRSNDVF-EDLDFYIGDEAAARAS------SCTLS----- 68 (416)
T ss_pred CCCCEEEEECCCCEEEEEECCCCCCCEEECCEEECCCCCCCCCCCCC-CCCCEEECHHHHHCCC------CCEEC-----
T ss_conf 99998999899983898778899987687553131576664445665-5454442467762266------75465-----
Q ss_pred CCCCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCHHHH
Q ss_conf 68726787652019869997599827999579587199999999999999999983884--7336985377887402578
Q gi|255764494|r 76 RFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGET--VSKAVITVPAYFNDAQRQA 153 (652)
Q Consensus 76 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~--v~~~VitVP~~f~~~qR~a 153 (652)
.|+ .+|. ... -+....++.++- .+.+... -..+++|-|++-...+|+.
T Consensus 69 -------------~Pi-----~~G~--------I~d-wd~~e~iw~~~~---~~~L~i~p~e~~vlltE~~~~~~~~Rek 118 (416)
T PTZ00280 69 -------------YPI-----KHGI--------VED-WDKMERIWQHCI---YKYLRVEPEEHGFILTEPPANPPENREY 118 (416)
T ss_pred -------------CCC-----CCCE--------ECC-HHHHHHHHHHHH---HCCCCCCCCCCCEEEECCCCCCHHHHHH
T ss_conf -------------741-----1698--------678-999999999984---2024768777866842289898899999
Q ss_pred HHHH-HHHCCCCCCCCCCCHHHHHHH-HHCC------CCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCH
Q ss_conf 8634-421122222222102478888-6034------4565507998724411454310102314654201332245521
Q gi|255764494|r 154 TKDA-GRIAGLDVLRIINEPTAAALA-YGLD------KKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGE 225 (652)
Q Consensus 154 ~~~A-a~~AGl~v~~li~EptAAal~-Y~~~------~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~ 225 (652)
+.+. .+.-++.-+-+.+.|.-|+++ |.-. .....+-||+|+|.+.+.| +-+-+|..--.+ .-..++||+
T Consensus 119 ~~eilFE~f~vp~~~~~~~~~Lsl~as~~~~~~~~~~~~G~~tgLVVD~G~~~t~v--vPV~dG~~l~~~-~~r~~iGG~ 195 (416)
T PTZ00280 119 TAEVMFETFGVKQLHIAVQGALALRASWTSGKAKELGLAGKDTGTVIDSGDGVTHV--IPIVDGFVIGSA-IQHIPLAGR 195 (416)
T ss_pred HHHHHHHHCCCCEEEEECCHHHEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE--EEEECCEECHHH-HEECCCHHH
T ss_conf 99998851578769996022320000134444543345898628999808995378--543778983256-411165799
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE--------EEEEEC-----CCCCCCCCCCEEE
Q ss_conf 344766553678764201343024478999999999988541155650--------358630-----4434678872126
Q gi|255764494|r 226 DFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQ--------TEINLP-----FISANSAGAQHLN 292 (652)
Q Consensus 226 d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~--------~~i~i~-----~~~~~~~~g~d~~ 292 (652)
+++..|.+.+.++ +.++..+. . +.-++.+|+.++-... ..-..+ ....+...+.++.
T Consensus 196 ~lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~cyv~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (416)
T PTZ00280 196 DITNFVLERLRER-----GEPVPPDD-A----LLLAQRIKEQYCYIARDIAREFDTYDSDLPKHITKHCAVNSKTGQPYS 265 (416)
T ss_pred HHHHHHHHHHHHC-----CCCCCCHH-H----HHHHHHCCCCCCEECCCHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCE
T ss_conf 9999999999973-----99988378-8----889986210136025707889987640201114334566666788833
Q ss_pred EEECCCCC---CCCCCCCH------HHHHHCCCCCCHHCC--CCCEEEEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 87311000---01234200------001100111101013--563110146630785305677886541011
Q gi|255764494|r 293 MKLTRAQF---ERLVNHLI------QKTVEPCKKCLQDAG--LSPSDIDEVVLVGGMTRMPKIQQSVQDFFN 353 (652)
Q Consensus 293 ~~itR~~f---e~l~~~l~------~~~~~~i~~~L~~a~--~~~~~I~~V~lvGGssriP~v~~~i~~~fg 353 (652)
+.+..+.| |-+..|-+ ..+.++|.+++..+. +.+.-...|+|+||+|.+|.+.++|+.-+.
T Consensus 266 i~lg~Erf~~pE~LF~P~~~~~~~~~~l~~li~~sI~~c~~d~r~~L~~NIvL~GGsSl~~Gf~eRL~~EL~ 337 (416)
T PTZ00280 266 VDVGYEKFLGPEVFFHPEIFSGEWTTPLPEVVDRAVWSCPIDCRRPLYRNIVLSGGTTMFPKFDKRLQKDLR 337 (416)
T ss_pred EECCHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 415523213833314863347766678879999999858888999987488996722477578999999999
No 37
>PTZ00281 actin; Provisional
Probab=98.93 E-value=5.3e-08 Score=79.32 Aligned_cols=306 Identities=17% Similarity=0.185 Sum_probs=147.5
Q ss_pred EEEEECCCCEEEEEEEECCEEEE-EECCCCCC-CCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH
Q ss_conf 69980486606999998995599-75689862-56279999489989966789863330835110020675498687267
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNVRV-IENAEGTR-TTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDST 81 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~~i-i~n~~g~r-~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (652)
.|=||+|+.++++++.....|.+ +++--|+. .....+.... ...++|..+.... . ...+
T Consensus 8 avViD~Gs~~~k~G~aGe~~P~~i~ps~vg~~~~~~~~~~~~~-~~~~~g~~~~~~~---~---~~~~------------ 68 (376)
T PTZ00281 8 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQ-KDSYVGDEAQSKR---G---ILTL------------ 68 (376)
T ss_pred EEEEECCCCEEEEEECCCCCCCEEEECCCEEECCCCCCCCCCC-CCCEECCHHHHCC---C---CEEE------------
T ss_conf 6999999982997479899987775074236876454457666-6744274566127---7---5278------------
Q ss_pred HHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCC--CCCEEEEEECCCCCCCHHHHHHHHH-
Q ss_conf 8765201986999759982799957958719999999999999999998388--4733698537788740257886344-
Q gi|255764494|r 82 VAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGE--TVSKAVITVPAYFNDAQRQATKDAG- 158 (652)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~--~v~~~VitVP~~f~~~qR~a~~~Aa- 158 (652)
.+|+ .+| ....- +..-.++.++. .+.+.. .-..++||-|++-...+|+.+.+..
T Consensus 69 ------~~pi-----~~g--------~i~dw-d~~e~~~~~~~---~~~l~v~p~e~pvllte~~~~~~~~Re~~~eilF 125 (376)
T PTZ00281 69 ------KYPI-----EHG--------IVTNW-DDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125 (376)
T ss_pred ------CCCC-----CCC--------EECCH-HHHHHHHHHHH---HHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf ------0687-----578--------47789-99999999996---3113888343832676269898899999999985
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 21122222222102478888603445655079987244114543101023146542013322455213447665536787
Q gi|255764494|r 159 RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT 238 (652)
Q Consensus 159 ~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~ 238 (652)
+--+...+.+...|..+++++|. .+-+|+|+|++.+.|+- +-+|.. +....-..++||+++++.|.+.+.+.
T Consensus 126 E~~~vp~~~~~~~~~ls~ya~g~-----~tglVVDiG~~~T~v~P--V~dG~~-~~~~~~~~~~gG~~lt~~l~~~l~~~ 197 (376)
T PTZ00281 126 ETFNTPAMYVAIQAVLSLYASGR-----TTGIVMDSGDGVSHTVP--IYEGYA-LPHAILRLDLAGRDLTDYMMKILTER 197 (376)
T ss_pred CCCCCCCEEEECCHHHHHHCCCC-----CEEEEEECCCCCCEEEE--EECCEE-CCHHHEEEECCHHHHHHHHHHHHHHC
T ss_conf 00699807997624210020698-----43899972899616875--267887-11223444273999999999999965
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC---CE---------EEEEECCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 642013430244789999999999885411556---50---------358630443467887212687311000012342
Q gi|255764494|r 239 FKKENGIDLKQDTLALQRLKEAAEKAKIELSST---SQ---------TEINLPFISANSAGAQHLNMKLTRAQFERLVNH 306 (652)
Q Consensus 239 ~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~---~~---------~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~ 306 (652)
+.++..... . .-++.+|+.+... .+ ....-.+. ..+|.. +.+..+.| ...+.
T Consensus 198 -----~~~~~~~~~--~---~~v~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~---LPDg~~--i~~~~er~-~~~E~ 261 (376)
T PTZ00281 198 -----GYSFTTTAE--R---EIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYE---LPDGQV--ITIGNERF-RCPEA 261 (376)
T ss_pred -----CCCCCCHHH--H---HHHHHHHHHCCEECCCHHHHHHHHHCCCCCCEEEE---CCCCCE--EEECHHHH-HCCHH
T ss_conf -----988874788--9---99998565213651677899875005864220159---999978--87462453-08586
Q ss_pred CHHH---------HHHCCCCCCHHCC--CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCC--------CCCCCCCCCHHH
Q ss_conf 0000---------1100111101013--56311014663078530567788654101111--------111356531011
Q gi|255764494|r 307 LIQK---------TVEPCKKCLQDAG--LSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKS--------PSKGVNPDEVVA 367 (652)
Q Consensus 307 l~~~---------~~~~i~~~L~~a~--~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~--------~~~~~npdeaVa 367 (652)
+|+. +.+.|.+++..+. +.+.-...|+|+||+|++|.+.++|...+..- +...-++..++=
T Consensus 262 lF~P~~~g~~~~gl~~~i~~si~~c~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~r~~~aW 341 (376)
T PTZ00281 262 LFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVW 341 (376)
T ss_pred HCCCHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCH
T ss_conf 64903138876770799999998599999997751869646402383589999999996689983589954897774254
Q ss_pred HHHHHCCC
Q ss_conf 11100022
Q gi|255764494|r 368 MGAAIQAG 375 (652)
Q Consensus 368 ~GAA~~a~ 375 (652)
.||++.|.
T Consensus 342 ~GgSilas 349 (376)
T PTZ00281 342 IGGSILAS 349 (376)
T ss_pred HHHHHHHC
T ss_conf 75899885
No 38
>KOG0679 consensus
Probab=98.82 E-value=7.2e-07 Score=70.73 Aligned_cols=179 Identities=18% Similarity=0.199 Sum_probs=102.7
Q ss_pred EEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEE--------ECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 699804866069999989955997568986256279999--------489989966789863330835110020675498
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGF--------TDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGR 75 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~--------~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~ 75 (652)
.|=||.|.-.+.+++....-|.. .+||+++. .+.+..++++.|.. ...|.--+....+- |.
T Consensus 13 alViDpGS~~traGyaged~Pk~--------ilPS~~G~~tk~~~d~~~~~~~y~~~~ai~--~pr~gmEv~~~i~n-Gl 81 (426)
T KOG0679 13 ALVIDPGSHTTRAGYAGEDSPKA--------ILPSVYGKVTKTDGDAEDKKGYYVDENAIH--VPRPGMEVKTPIKN-GL 81 (426)
T ss_pred EEEEECCCCEEECCCCCCCCCCC--------CCCCEEEEEECCCCCCCCCCCEEEECHHCC--CCCCCCEECCCHHC-CC
T ss_conf 59980797157612257778642--------256403342013676455664475031003--78999733040114-77
Q ss_pred CCCCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCC--CCCEEEEEECCCCCCCHHHH
Q ss_conf 6872678765201986999759982799957958719999999999999999998388--47336985377887402578
Q gi|255764494|r 76 RFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGE--TVSKAVITVPAYFNDAQRQA 153 (652)
Q Consensus 76 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~--~v~~~VitVP~~f~~~qR~a 153 (652)
- .| =++.-++.++..+ ..|.. .-.-++||-|++=+..+|+-
T Consensus 82 v-~d---------------------------------WD~~~~~w~~~~~---~~Lk~~p~ehP~litEp~wN~~~~Rek 124 (426)
T KOG0679 82 V-ED---------------------------------WDLFEMQWRYAYK---NQLKVNPEEHPVLITEPPWNTRANREK 124 (426)
T ss_pred C-CC---------------------------------HHHHHHHHHHHHH---HHHHCCCCCCCEEEECCCCCCHHHHHH
T ss_conf 5-34---------------------------------7999999999986---453049432654651388885899999
Q ss_pred HHHHH-HHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 86344-21122222222102478888603445655079987244114543101023146542013322455213447665
Q gi|255764494|r 154 TKDAG-RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLV 232 (652)
Q Consensus 154 ~~~Aa-~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~ 232 (652)
+.+.+ +--.+....|..+|+++|++- ...+-||+|+|++++.||= +.+|.+--.++. -..|||+-++..+.
T Consensus 125 ~~ElmFE~~nvPAf~L~k~~v~~AFA~-----GrstalVvDiGa~~~svsP--V~DG~Vlqk~vv-ks~laGdFl~~~~~ 196 (426)
T KOG0679 125 LTELMFEKLNVPAFYLAKTAVCTAFAN-----GRSTALVVDIGATHTSVSP--VHDGYVLQKGVV-KSPLAGDFLNDQCR 196 (426)
T ss_pred HHHHHHHHCCCCEEEEECHHHHHHHHC-----CCCCEEEEEECCCCCEEEE--EECCEEEEEEEE-ECCCCHHHHHHHHH
T ss_conf 999998644885588844189999865-----8973599972688742433--321367540157-44562578999999
Q ss_pred HHHHHH
Q ss_conf 536787
Q gi|255764494|r 233 EHICDT 238 (652)
Q Consensus 233 ~~~~~~ 238 (652)
++|.++
T Consensus 197 q~l~~~ 202 (426)
T KOG0679 197 QLLEPK 202 (426)
T ss_pred HHHHHC
T ss_conf 987660
No 39
>TIGR01174 ftsA cell division protein FtsA; InterPro: IPR003494 FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains .; GO: 0007049 cell cycle.
Probab=98.58 E-value=2.4e-06 Score=66.74 Aligned_cols=179 Identities=20% Similarity=0.354 Sum_probs=120.6
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 78863442112222222210247888860344565507998724411454310102314654201332245521344766
Q gi|255764494|r 152 QATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCL 231 (652)
Q Consensus 152 ~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l 231 (652)
+.+..+...+|+++..++..+.|++.+.--+...+-.++++|+||||+|+.+..- |.+. ..+...+||..+..-+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~d~g~g~~~~~~~~~--g~~~---~~~~~p~g~~~~~~d~ 243 (393)
T TIGR01174 169 RNLVKCVERCGLEVDDIVLSGLASAIAVLTEDEKELGVLLIDIGGGTTDLAVYTG--GSLR---YTGVLPIGGNHVTKDL 243 (393)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEEEC--CCEE---EEEEEECCCHHHHHHH
T ss_conf 8999999870773123111212212332122211045689961886035677636--8024---4333103421445556
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC--------CCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 55367876420134302447899999999998854115--------5650358630443467887212687311000012
Q gi|255764494|r 232 VEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELS--------STSQTEINLPFISANSAGAQHLNMKLTRAQFERL 303 (652)
Q Consensus 232 ~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS--------~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l 303 (652)
...+.-... .+|+.|.... ......+.++....+ ......+++..+..+
T Consensus 244 ~~~~~~~~~-------------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~ 300 (393)
T TIGR01174 244 AKALRTPLE-------------------EAERIKIKYGCALYPLLEEGPDENVEVPSVGSD----GRPPRSLSRKELAEI 300 (393)
T ss_pred HHHHCCCHH-------------------HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC----CCCCCHHHHHHHHHH
T ss_conf 776248733-------------------556665442011100001465431453145787----654420118899998
Q ss_pred CCCCHHHHHHCCC-------CCCHHCCCCCEE-EEEEEECCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 3420000110011-------110101356311-014663078530567788654101111111
Q gi|255764494|r 304 VNHLIQKTVEPCK-------KCLQDAGLSPSD-IDEVVLVGGMTRMPKIQQSVQDFFNKSPSK 358 (652)
Q Consensus 304 ~~~l~~~~~~~i~-------~~L~~a~~~~~~-I~~V~lvGGssriP~v~~~i~~~fg~~~~~ 358 (652)
+.+.+..+...+. ..+...+..... ...+++.||.+.++.+.+.....|..++..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~g~~~~~~~~~~~~~~~ 363 (393)
T TIGR01174 301 IEARAEELLELVKDELLKLQKELRKSGFPKEELGGGIVLTGGGAQLEGLKELAEEVFDNPVRL 363 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCHHC
T ss_conf 878899999998888999998886405651230364266266022246899998863131000
No 40
>PRK10331 L-fuculokinase; Provisional
Probab=98.47 E-value=8.3e-06 Score=62.68 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=45.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 10146630785305677886541011111113565310111110002234675221
Q gi|255764494|r 328 DIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKD 383 (652)
Q Consensus 328 ~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~ 383 (652)
.++.|.++||.||.|...+++.+.+|+++...-+ .|+.++|||+.|++=.|..++
T Consensus 389 ~~~~i~~~GGgs~s~~w~Qi~ADv~g~pV~~~~~-~e~~alGaA~la~~a~G~~~~ 443 (470)
T PRK10331 389 KATELLLVGGGSRNALWNQIKANMLDIPIKVLDD-AETTVAGAAMFGWYGVGEFSS 443 (470)
T ss_pred CCCEEEEECCHHHCHHHHHHHHHHHCCEEEECCC-CCHHHHHHHHHHHHHCCCCCC
T ss_conf 9787999787133799999999986985894798-854899999999998298899
No 41
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=98.46 E-value=3.2e-05 Score=58.21 Aligned_cols=58 Identities=26% Similarity=0.264 Sum_probs=46.8
Q ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 13563110146630785305677886541011111113565310111110002234675221
Q gi|255764494|r 322 AGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKD 383 (652)
Q Consensus 322 a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~ 383 (652)
++.. ++.|.++||.||.|...+++.+.||.++.. ....|+.++|||+.|++-.|..++
T Consensus 407 ~g~~---~~~i~~~GGgsks~lw~Qi~ADv~g~pV~~-~~~~e~~alGaA~lAa~a~G~~~~ 464 (521)
T PRK10939 407 SGVF---PSSLVFAGGGSKGKLWSQILADVTGLPVKV-PVVKEATALGCAIAAGVGAGIYSS 464 (521)
T ss_pred CCCC---CCEEEEECCCCCCHHHHHHHHHHHCCEEEE-CCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 3999---897999896401799999998866981794-787752999999999998387699
No 42
>PTZ00294 glycerol kinase; Provisional
Probab=98.44 E-value=3e-06 Score=66.01 Aligned_cols=65 Identities=23% Similarity=0.331 Sum_probs=49.7
Q ss_pred CCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 111101013563110146630785305677886541011111113565310111110002234675221
Q gi|255764494|r 315 CKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKD 383 (652)
Q Consensus 315 i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~ 383 (652)
++...+.+|.. ++.|.++||.+|.|...+++.+.||.++... +..|+.++|||+.|++=.|-.++
T Consensus 403 ~e~l~~~~G~~---~~~I~~~GG~a~s~lw~Qi~ADv~g~pV~~~-~~~e~~alGaAilAavg~G~~~s 467 (510)
T PTZ00294 403 VLAMKRDSGIE---LNSLRVDGGLTKNKLLMQIQADILGVKLEVP-EMHETTALGAALCAGLAAGVWTS 467 (510)
T ss_pred HHHHHHHHCCC---CCEEEEECCCHHCHHHHHHHHHHHCCEEEEC-CCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99999860999---7879997783238999999999659847946-88870899999999998198999
No 43
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.42 E-value=1.2e-05 Score=61.50 Aligned_cols=192 Identities=18% Similarity=0.168 Sum_probs=102.5
Q ss_pred EEEECCCCEEEEEEEECCEEE-EEECCCCCCC-CCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHH
Q ss_conf 998048660699999899559-9756898625-62799994899899667898633308351100206754986872678
Q gi|255764494|r 5 IGIDLGTTNSCVAIMDGKNVR-VIENAEGTRT-TPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTV 82 (652)
Q Consensus 5 iGIDlGtt~s~va~~~~~~~~-ii~n~~g~r~-~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 82 (652)
|=||-|+.++++.+..+..|. |.+|..+++. +.++..-...+.+++|..+..-... |...+ ++
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~~~~---~~----------- 73 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SLLEL---RY----------- 73 (444)
T ss_pred EEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC-CCCEE---EC-----------
T ss_conf 8994797307840058888606643201332123432224324665457534430577-65103---04-----------
Q ss_pred HHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCC--CCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 765201986999759982799957958719999999999999999998388--473369853778874025788634421
Q gi|255764494|r 83 AKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGE--TVSKAVITVPAYFNDAQRQATKDAGRI 160 (652)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~--~v~~~VitVP~~f~~~qR~a~~~Aa~~ 160 (652)
+..+|.+ ..+...| .+.+++...- .++.. .-..+++|-|......+|.-+.+.+--
T Consensus 74 ------------p~~~g~i------~~W~~~e---~~w~~~~~~~-~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE 131 (444)
T COG5277 74 ------------PIENGII------LNWDAME---QIWDYTFFNK-GDLLPSPEEHPLLLTEPPLNPPSNREKITELLFE 131 (444)
T ss_pred ------------CCCCCCC------CCCHHHH---HHHHHHHCCH-HHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf ------------6536854------7837899---9998853030-0026887677559852677758899999999998
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 122222222102478888603445655079987244114543101023146542013322455213447665536787
Q gi|255764494|r 161 AGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT 238 (652)
Q Consensus 161 AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~ 238 (652)
.+++-.+..-+.|.+..|...+.. .+.+|+|+|.+.++|+= +-+|.. +.....-..+||++++..|...+...
T Consensus 132 -~~~vp~~~~~~~~~l~~ya~g~~~-~~g~ViD~G~~~t~v~P--V~DG~~-l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 132 -TLNVPALYLAIQAVLSLYASGSSD-ETGLVIDSGDSVTHVIP--VVDGIV-LPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred -HCCCCCEEEEHHHHHHHHHCCCCC-CCEEEEECCCCCEEEEE--EECCCC-CCCCCEEEECCCHHHHHHHHHHHHHC
T ss_conf -508860575277789998537777-73499976898515676--303641-35530466538578999999998632
No 44
>PRK04123 ribulokinase; Provisional
Probab=98.34 E-value=3.6e-05 Score=57.84 Aligned_cols=64 Identities=33% Similarity=0.574 Sum_probs=48.7
Q ss_pred CCCCHHCCCCCEEEEEEEECCCCC-CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 111010135631101466307853-05677886541011111113565310111110002234675221
Q gi|255764494|r 316 KKCLQDAGLSPSDIDEVVLVGGMT-RMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKD 383 (652)
Q Consensus 316 ~~~L~~a~~~~~~I~~V~lvGGss-riP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~ 383 (652)
-++|++.+.. ++.|.++||.+ +.|...+++.++||+++... ...|+.|+|||+.|++-.|-.++
T Consensus 429 ~d~l~~~g~~---~~~i~~~GGga~ks~~w~Qi~ADvlg~pv~~~-~~~e~~alGAA~lAa~a~G~~~d 493 (542)
T PRK04123 429 MECFEDQGVP---VNNVIALGGIARKNPVIMQIYADVLNRPIQVV-ASDQCPALGAAIFAAVAAGAYPD 493 (542)
T ss_pred HHHHHHCCCC---CCEEEEECCCCCCCHHHHHHHHHHHCCEEEEC-CCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9999973989---57699967986608899999999769818966-88860799999999998387799
No 45
>pfam02491 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains. The FtsA protein contains two structurally related actin-like ATPase domains which are also structurally related to the ATPase domains of HSP70 (see PF00012).
Probab=98.29 E-value=1.8e-06 Score=67.64 Aligned_cols=140 Identities=17% Similarity=0.293 Sum_probs=88.0
Q ss_pred EEEEEECCCEEEEEEEEECC-CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79987244114543101023-14654201332245521344766553678764201343024478999999999988541
Q gi|255764494|r 189 VIVFDFGGGTFDVSLLEMGD-GVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIE 267 (652)
Q Consensus 189 vlV~D~Gggt~dvsi~~~~~-~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~ 267 (652)
++++|+|++++++++.+... +...++. +||.++++.++..+ ..-..+||++|+.
T Consensus 1 v~~IDIG~~~t~~~v~~~~~~~~~~~i~------~Gg~~It~dia~~l-------------------~~~~~~AE~ik~~ 55 (163)
T pfam02491 1 VALIDIGSGKTDIAIAKDGSLGYISVIG------VGGGHITDDIAQAL-------------------RTAVEEAERIKIK 55 (163)
T ss_pred CEEEECCCCCEEEEEEECCCEEEEEEEE------CCCHHHHHHHHHHH-------------------HHHHHHHHHHCCC
T ss_conf 9899938993999999999636999983------08438999999986-------------------2359999864667
Q ss_pred CCCCCEEEEEECCCCCC---CC---CCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHC------CCCC----EEEEE
Q ss_conf 15565035863044346---78---872126873110000123420000110011110101------3563----11014
Q gi|255764494|r 268 LSSTSQTEINLPFISAN---SA---GAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDA------GLSP----SDIDE 331 (652)
Q Consensus 268 LS~~~~~~i~i~~~~~~---~~---~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a------~~~~----~~I~~ 331 (652)
.... -+++...... .. ...+-...+++.++.+++++-++.++..+.+-+..- .+.. -..+.
T Consensus 56 ~g~~---~~~~~~~~~~~~~~~~~v~~~~~~~~I~~~~i~~ii~~r~~eIl~~i~~~~~~d~~~~~~p~g~~g~~l~~~~ 132 (163)
T pfam02491 56 IGSV---YVSISGGHIKSDNEKGEVPIVDEDREITREDLSRVIEARLEEILHLIPQEYTVDQKGVKDPIGMSGVRLEVGG 132 (163)
T ss_pred CCEE---EEEECCCCCCCCCCEEEECCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE
T ss_conf 6314---7740466431124304775789983998999999999989879999998860253003363013443131779
Q ss_pred EEECCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 6630785305677886541011111
Q gi|255764494|r 332 VVLVGGMTRMPKIQQSVQDFFNKSP 356 (652)
Q Consensus 332 V~lvGGssriP~v~~~i~~~fg~~~ 356 (652)
++|+||++++|.+.+.+++.||..+
T Consensus 133 ~vltGg~s~l~ni~~~~~~~~~v~v 157 (163)
T pfam02491 133 HVLTGGGSALPNLEELAERAGGVRI 157 (163)
T ss_pred EEEECCHHHHHCHHHHHHHHCCCEE
T ss_conf 9999756466399999999749622
No 46
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.24 E-value=0.00025 Score=51.48 Aligned_cols=204 Identities=20% Similarity=0.283 Sum_probs=114.7
Q ss_pred HHHHHHHHCCCCC-----EEEEEECCCCCC-------CHH----HHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC-----
Q ss_conf 9999998388473-----369853778874-------025----7886344211222222221024788886034-----
Q gi|255764494|r 124 KETAESFLGETVS-----KAVITVPAYFND-------AQR----QATKDAGRIAGLDVLRIINEPTAAALAYGLD----- 182 (652)
Q Consensus 124 k~~ae~~l~~~v~-----~~VitVP~~f~~-------~qR----~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~----- 182 (652)
...|..|+.-|+. -.|++-++.=.. +-| ....+|.++|||++.-+==|.-|.--+|.+-
T Consensus 108 ~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~ 187 (354)
T COG4972 108 ESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFG 187 (354)
T ss_pred HHHHHHCCCCCHHHCCCCEEEECCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHC
T ss_conf 99876348986353243217834655788627999997105666788999997699745885187899999999998757
Q ss_pred C-CCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 4-565507998724411454310102314654201332245521344766553678764201343024478999999999
Q gi|255764494|r 183 K-KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAA 261 (652)
Q Consensus 183 ~-~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~ 261 (652)
. ...-+++|+|+|+..+.++++.=++-.+ .-+..+||+++...+. +.|+.+... +
T Consensus 188 ~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~~g~~Qlt~~i~--------r~~~L~~~~-----------a 243 (354)
T COG4972 188 PEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVPVGTDQLTQEIQ--------RAYSLTEEK-----------A 243 (354)
T ss_pred CCHHHHHHEEEEECCCCEEEEEEECCEEEE-----EEECCCCHHHHHHHHH--------HHHCCCHHH-----------H
T ss_conf 860223320356224533799998790356-----7614574899999999--------985899667-----------6
Q ss_pred HHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHH--CCCCCEEEEEEEECCCCC
Q ss_conf 988541155650358630443467887212687311000012342000011001111010--135631101466307853
Q gi|255764494|r 262 EKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQD--AGLSPSDIDEVVLVGGMT 339 (652)
Q Consensus 262 e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~--a~~~~~~I~~V~lvGGss 339 (652)
+.+|....--+ |+.. +...+++..+.+-|.+.|+- +.-...+|+.++|-||+.
T Consensus 244 ~~~k~~~~~P~-----------------~y~~--------~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA 298 (354)
T COG4972 244 EEIKRGGTLPT-----------------DYGS--------EVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGA 298 (354)
T ss_pred HHHHHCCCCCC-----------------CHHH--------HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
T ss_conf 89872789998-----------------4567--------8888889999999999999987435651454799846961
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 05677886541011111113565310111110002234
Q gi|255764494|r 340 RMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVL 377 (652)
Q Consensus 340 riP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~l 377 (652)
++-.+.+.+.+..+.+ ..-+||-...+.++...+..+
T Consensus 299 ~l~gL~~~i~qrl~~~-t~vanPf~~~~~~~~v~k~~l 335 (354)
T COG4972 299 SLEGLAAAIQQRLSIP-TEVANPFAYMALNVKVNKGYL 335 (354)
T ss_pred CHHHHHHHHHHHHCCC-EEEECHHHHHHHHHCCCCCCC
T ss_conf 0663999999873898-076277898765212333651
No 47
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.20 E-value=0.00011 Score=54.31 Aligned_cols=177 Identities=20% Similarity=0.266 Sum_probs=95.7
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEE-----CCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2222222102478888603445655079987244114543101023146542-----01332245521344766553678
Q gi|255764494|r 163 LDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVK-----ATNGDTFLGGEDFDSCLVEHICD 237 (652)
Q Consensus 163 l~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl-----~~~gd~~lGG~d~D~~l~~~~~~ 237 (652)
|..-..++|.+|-+.+-... .+..=.|+|+|| -|.-++.+.+|.+.-. +.+| -| .|++
T Consensus 207 ~~aD~~~~Ei~ah~kgA~~f--~p~~dtIiDIGG--QD~K~i~i~dG~v~df~mN~~CAAG----tG---------rFLE 269 (396)
T COG1924 207 LGADKVVVEISAHAKGARYF--APDVDTVIDIGG--QDSKVIKLEDGKVDDFTMNDKCAAG----TG---------RFLE 269 (396)
T ss_pred HCCCCCEEEEEHHHHHHHHH--CCCCCEEEEECC--CCEEEEEEECCEEEEEEECCCCCCC----CC---------HHHH
T ss_conf 05774325430367789872--889867998568--5036899718814225764610246----65---------3899
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHH-CCC
Q ss_conf 7642013430244789999999999885411556503586304434678872126873110000123420000110-011
Q gi|255764494|r 238 TFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVE-PCK 316 (652)
Q Consensus 238 ~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~-~i~ 316 (652)
.+-+.-++++.+ |-+-+++++.--+-+....+..++-. ++..=--..-|+++..+...+.. ...
T Consensus 270 ~~A~~Lgv~v~E-------~~~~A~~~~~~v~i~S~CaVF~eSev--------i~~~~~G~~~EdI~AGl~~Sv~~~v~~ 334 (396)
T COG1924 270 VIARRLGVDVEE-------LGKLALKATPPVKINSRCAVFAESEV--------ISALAEGASPEDILAGLAYSVAENVAE 334 (396)
T ss_pred HHHHHHCCCHHH-------HHHHHHCCCCCCCCCCEEEEEEHHHH--------HHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999982997899-------99898558887453772078741788--------999986998899999999999999999
Q ss_pred CCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 11010135631101466307853056778865410111111135653101111100022
Q gi|255764494|r 317 KCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAG 375 (652)
Q Consensus 317 ~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~ 375 (652)
+.++.-.+. + .|+|+||.+..-.+.+.+++++|.++...-+|.-.=|.|||+.|.
T Consensus 335 ~~~~~~~i~--~--~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 335 KVIKRVDIE--E--PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred HHHHCCCCC--C--CEEEECCCHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHH
T ss_conf 985116888--8--879988402579999999998588153489500333888899875
No 48
>pfam07520 SrfB Virulence factor SrfB. This family includes homologues of SsrAB is a two-component regulatory system encoded within the Salmonella pathogenicity island SPI-2. Among the products of genes activated by SsrAB within epithelial and macrophage cells is SrfB. Homologues are found in several other proteobacteria.
Probab=98.03 E-value=0.00029 Score=50.98 Aligned_cols=317 Identities=19% Similarity=0.302 Sum_probs=145.6
Q ss_pred EECHHHHHHHHHC----CCHHHHHHHHHCCCCCCCHHHHHHHH---------------CCCEEEEECCCCEEEEEEC---
Q ss_conf 9667898633308----35110020675498687267876520---------------1986999759982799957---
Q gi|255764494|r 49 LVGQPAKRQAVTN----PSNTIFAAKRLIGRRFNDSTVAKDAS---------------LVPFKIVEGKGGDAWIEAQ--- 106 (652)
Q Consensus 49 ~vG~~A~~~~~~~----p~~ti~~~KrliG~~~~d~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~--- 106 (652)
-||.+|.+++... ....+.+-||.+ |++.-.+...+ ..|+.-.-+..|.+.+.+.
T Consensus 332 RvG~EA~rla~~r~gtEg~tGlSSPKRYL---WD~~~~~~~WRF~~~~~~~~~ep~a~~~p~~~lln~~G~~l~~l~~~~ 408 (999)
T pfam07520 332 RVGPEAARLAGRRRGTEGATGLSSPKRYL---WDEEPYAQGWRFNQAHVKSQTEPLATAAPLTNLVNDRGEPLYQLEPED 408 (999)
T ss_pred EECHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCCCCC
T ss_conf 32789999999744887766778873215---479865788411466677777842436889986162777500158121
Q ss_pred ------CEEECHHHHHHHHHHHHHHHHHHHHCC--------------CCCEEEEEECCCCCCCHHHHHHHHHHHC-----
Q ss_conf ------958719999999999999999998388--------------4733698537788740257886344211-----
Q gi|255764494|r 107 ------GKQYSPSQISAIVLQKMKETAESFLGE--------------TVSKAVITVPAYFNDAQRQATKDAGRIA----- 161 (652)
Q Consensus 107 ------~~~~~peei~a~iL~~lk~~ae~~l~~--------------~v~~~VitVP~~f~~~qR~a~~~Aa~~A----- 161 (652)
.-.||-.-+..+.|..|...|-.+.++ ....+++|||+...-.+|+.++.-++-|
T Consensus 409 ~r~p~~~~~ySRSslmtfml~Eil~qAl~qiNspa~R~~~~~~~~PRrLR~iILT~PtAMPk~Er~ifr~r~~~Ai~LvW 488 (999)
T pfam07520 409 ERLPVFSPHYSRSSLMTFMLAEILAQALMQINSPAQRLRMGHADAPRRLRSIILTVPPAMPKPEREIFRQRMQEAIALVW 488 (999)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 45777666514899999999999999998755999883167889873543047879999987999999999999999999
Q ss_pred ---CCCC--------------------CCC-CCCHHHHHHHH---------H---------CCC---C------CC--CE
Q ss_conf ---2222--------------------222-21024788886---------0---------344---5------65--50
Q gi|255764494|r 162 ---GLDV--------------------LRI-INEPTAAALAY---------G---------LDK---K------DA--RT 188 (652)
Q Consensus 162 ---Gl~v--------------------~~l-i~EptAAal~Y---------~---------~~~---~------~~--~~ 188 (652)
|... ++. -+|-|+.=+-| | +-+ . .. -+
T Consensus 489 k~lGw~~~~~~~~~~~~~~~~~~p~P~v~~eWDEATC~QlVyLYnE~~~~fgG~~e~fF~~~~Rp~~~~~~~~~~~~slr 568 (999)
T pfam07520 489 KAMGWHPSDEDFEDAKGREQSRVPLPEVQVEWDEATCGQLVYLYNETQVNFGGRTEEFFAALARPDRPPAPGAVPGRSLR 568 (999)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCEEE
T ss_conf 96189878874002333444458898348897325630123211677887099899999984588888887668887168
Q ss_pred EEEEEECCCEEEEEEEEEC--CC---EEEE----ECCCCCCCCCCHHHHHHHH-HHHHHHHHHH---CCC----------
Q ss_conf 7998724411454310102--31---4654----2013322455213447665-5367876420---134----------
Q gi|255764494|r 189 VIVFDFGGGTFDVSLLEMG--DG---VFEV----KATNGDTFLGGEDFDSCLV-EHICDTFKKE---NGI---------- 245 (652)
Q Consensus 189 vlV~D~Gggt~dvsi~~~~--~~---~~~v----l~~~gd~~lGG~d~D~~l~-~~~~~~~~~~---~~~---------- 245 (652)
|.=+|+||||+|..|.... .| ...+ +-..|- .+-|+|+=..++ .++...++.. .++
T Consensus 569 iASIDIGGGTTDL~It~Y~ld~g~G~nv~I~P~q~FReGF-kvAGDDiL~~vI~~~VlPal~~aL~~aG~~~~~~ll~~L 647 (999)
T pfam07520 569 VASIDIGGGTTDLVITDYYLDDGVGANVKIIPDQLFREGF-KVAGDDILLDVIQRLVLPALQAALRKAGVTDPRSLLSKL 647 (999)
T ss_pred EEEEEECCCCCEEEEEEEEECCCCCCCEEECCCCEECCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9988617986212688887236777713756621421011-014579999999998379999999983555899999997
Q ss_pred ---CHHHHH-HHH-------------HHHHHHHHHHHHHCCCCCEEEEEE--------------CCCCCC----CCCCC-
Q ss_conf ---302447-899-------------999999998854115565035863--------------044346----78872-
Q gi|255764494|r 246 ---DLKQDT-LAL-------------QRLKEAAEKAKIELSSTSQTEINL--------------PFISAN----SAGAQ- 289 (652)
Q Consensus 246 ---d~~~~~-~a~-------------~rL~~~~e~aK~~LS~~~~~~i~i--------------~~~~~~----~~~g~- 289 (652)
+-..+. +.+ .+++.+||..-..- .....+..+ +++... ..+..
T Consensus 648 FG~dg~~~~~~~lRqq~~lQv~~Pl~~~iL~~yE~~dp~~-~~~~~~~~f~dll~~~~Pt~~vl~yv~~~~~~~~~g~~~ 726 (999)
T pfam07520 648 FGGEGRSDQEKILRQQFTLQVFMPLGLAILSAYENYDPLD-GQAEIHLTFGDLLEREMPTENVLDYINEEVRRGPAGAPA 726 (999)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHEEHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 2878710799999999998999999999999864389445-552011058764554488489999998887515688888
Q ss_pred ----EEEEEECCCCCCCCCCC---CHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCC----
Q ss_conf ----12687311000012342---0000110011110101356311014663078530567788654101111111----
Q gi|255764494|r 290 ----HLNMKLTRAQFERLVNH---LIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSK---- 358 (652)
Q Consensus 290 ----d~~~~itR~~fe~l~~~---l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~---- 358 (652)
++...|...++...+-. .+.+.+..+-++ +...+.|-++|.|-.||.|.||.++..+...++.+
T Consensus 727 Fdi~dvpl~i~~~~l~~~fl~~r~~i~~~L~~lcEv-----v~~y~CDVlLLTGRPSrlPgv~al~r~~~pvpp~Riv~l 801 (999)
T pfam07520 727 FSILDVPLEIDLKALHEAFLSGRMNICDVLRALCEV-----VHLYDCDVLLLTGRPSRLPGVQALFRHLQPLPPDRIVPL 801 (999)
T ss_pred CCEECCCEECCHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEC
T ss_conf 521205134149999999871710378999999999-----998589989966986667789999997379994307772
Q ss_pred ----------------CCCCCCHHHHHHHHCCC
Q ss_conf ----------------35653101111100022
Q gi|255764494|r 359 ----------------GVNPDEVVAMGAAIQAG 375 (652)
Q Consensus 359 ----------------~~npdeaVa~GAA~~a~ 375 (652)
--||-..||.||.+.+-
T Consensus 802 ~~Y~tg~WYPF~~~grI~dPKtTaaVGAMLc~L 834 (999)
T pfam07520 802 HGYRTGNWYPFRKQGRIDDPKTTAAVGAMLCLL 834 (999)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 771217704688888769961779999999998
No 49
>KOG0676 consensus
Probab=98.02 E-value=0.00043 Score=49.71 Aligned_cols=280 Identities=20% Similarity=0.281 Sum_probs=131.0
Q ss_pred CCEEEEECCCCEEEEEEEECCEE-EEEECCCCC-CCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 81699804866069999989955-997568986-2562799994899899667898633308351100206754986872
Q gi|255764494|r 2 SKVIGIDLGTTNSCVAIMDGKNV-RVIENAEGT-RTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFND 79 (652)
Q Consensus 2 s~viGIDlGtt~s~va~~~~~~~-~ii~n~~g~-r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 79 (652)
+..|=||.|+.++++++.....| -++++..|+ |..++.++.... +.++|.+|...- ++ +
T Consensus 7 ~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~-~~~vg~~a~~~~------~l---~--------- 67 (372)
T KOG0676 7 IQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQK-DTYVGDEAESKR------TL---K--------- 67 (372)
T ss_pred CCEEEEECCCCEEECCCCCCCCCCEECCEECCCCCCCCCCCCCCCC-CCCCCHHHHCCC------CC---C---------
T ss_conf 6349997898527615678989754652213554445666664556-541352441432------23---5---------
Q ss_pred HHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCC--CCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf 678765201986999759982799957958719999999999999999998388--473369853778874025788634
Q gi|255764494|r 80 STVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGE--TVSKAVITVPAYFNDAQRQATKDA 157 (652)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~--~v~~~VitVP~~f~~~qR~a~~~A 157 (652)
+|. ++|. -.+...+ +.+ ..++. .+.+.. .-..+++|-|+.+..+-|+-+.+.
T Consensus 68 ---------~Pi-----e~Gi---v~~wd~m--e~i----w~~if---~~~L~~~Pee~pvllte~pl~p~~nREk~tqi 121 (372)
T KOG0676 68 ---------YPI-----ERGI---VTDWDDM--EKI----WHHLF---YSELLVAPEEHPVLLTEPPLNPKANREKLTQI 121 (372)
T ss_pred ---------CCC-----CCCC---CCCHHHH--HHH----HHHHH---HHHHCCCCCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf ---------864-----2560---2164889--999----99999---87642386648647543788835768888877
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 42112222222210247888860344565507998724411454310102314654201332245521344766553678
Q gi|255764494|r 158 GRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICD 237 (652)
Q Consensus 158 a~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~ 237 (652)
- .--|+|-.+.-.- .|.+ |.. .-.+=+|+|+|.|-+++ +-+-+|.. +-.......|||+|+..-|...+.+
T Consensus 122 ~-FE~fnvpa~yva~-qavl-ya~---g~ttG~VvD~G~gvt~~--vPI~eG~~-lp~ai~~ldl~G~dlt~~l~~~L~~ 192 (372)
T KOG0676 122 M-FETFNVPALYVAI-QAVL-YAS---GRTTGLVVDSGDGVTHV--VPIYEGYA-LPHAILRLDLAGRDLTDYLLKQLRK 192 (372)
T ss_pred H-HHHCCCCHHHHHH-HHHH-HHC---CCEEEEEEECCCCCEEE--EECCCCCC-CCHHHEEECCCCHHHHHHHHHHHHH
T ss_conf 5-5436863658988-7899-771---67058999868982135--50325631-5203403042112567999999975
Q ss_pred HHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHCCC------------CCEEEEEECCCCCCCCCCCEEEEEECCCCCC---
Q ss_conf 764201343024-478999999999988541155------------6503586304434678872126873110000---
Q gi|255764494|r 238 TFKKENGIDLKQ-DTLALQRLKEAAEKAKIELSS------------TSQTEINLPFISANSAGAQHLNMKLTRAQFE--- 301 (652)
Q Consensus 238 ~~~~~~~~d~~~-~~~a~~rL~~~~e~aK~~LS~------------~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe--- 301 (652)
.+..+.. ..+.. ++.+|+.|+. +.+..+... +... +|.- +.+.-+.|.
T Consensus 193 -----~g~s~~~~~~~eI------v~diKeklCyvald~~~e~~~~~~~~~l~~~--y~lP-Dg~~--i~i~~erf~~pE 256 (372)
T KOG0676 193 -----RGYSFTTSAEFEI------VRDIKEKLCYVALDFEEEEETANTSSSLESS--YELP-DGQK--ITIGNERFRCPE 256 (372)
T ss_pred -----CCCCCCCCCHHHH------HHHHHHHCCCCCCCCCHHHCCCCCCCCCCCC--CCCC-CCCE--EECCCCCCCCCH
T ss_conf -----0656423337999------8876765001202551333035665423444--1189-9987--855873223622
Q ss_pred CCCCC---------CHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 12342---------00001100111101013563110146630785305677886541011
Q gi|255764494|r 302 RLVNH---------LIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN 353 (652)
Q Consensus 302 ~l~~~---------l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg 353 (652)
-+.+| +-+.+...|.++ +..+.+.-...++|+||+|-+|.+.+.+.+...
T Consensus 257 ~lFqP~~~g~e~~gi~~~~~~sI~kc--d~d~rk~L~~nivLsGGtT~~pGl~~Rl~kEl~ 315 (372)
T KOG0676 257 VLFQPSLLGMESPGIHELTVNSIMKC--DIDLRKDLYENIVLSGGTTMFPGLADRLQKELQ 315 (372)
T ss_pred HCCCHHHCCCCCCCHHHHHHHHHHHC--CHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHH
T ss_conf 01785344887786379999998857--854778878536896773454328999998776
No 50
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.00046 Score=49.46 Aligned_cols=51 Identities=27% Similarity=0.250 Sum_probs=38.0
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 1014663078530567788654101111111356531011111000223467
Q gi|255764494|r 328 DIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG 379 (652)
Q Consensus 328 ~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~ 379 (652)
.++.|.++||++|.|...+++.+.||.++.... ..|+-+.|+|+.++...+
T Consensus 401 ~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~-~~e~~a~g~A~~~~~~~~ 451 (502)
T COG1070 401 PPSRVRVVGGGARSPLWLQILADALGLPVVVPE-VEEAGALGGAALAAAALG 451 (502)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEECC-CCCHHHHHHHHHHHHHHC
T ss_conf 977799977631579999999998689667247-510679999999999706
No 51
>TIGR01312 XylB xylulokinase; InterPro: IPR006000 The ability to metabolise xylose, one of the most abundant sugars in nature, is dependent on its conversion to xylulose-5-phosphate, which then enters the non-oxidative pentose phosphate pathway . Xylulose-5-phosphate is produced from xylose by the sequential action of two enzymes; xylose isomerase, which converts xylose to xylulose, and xylulokinase, which subsequently phosphorylates xylulose. This entry represents bacterial xylulokinase. In addition to its role in xylose metabolism this enzyme may also have a biosynthetic role. 1-deoxy-D-xylulose 5-phosphate serves as a precursor for the biosynthesis of the vitamins thiamine and pyridoxal and for the formation of isopentenyl pyrophosphate and dimethylallyl pyrophosphate via the nonmevalonate pathway of terpenoid biosynthesis. Xylulokinase catalyses the phosphorylation of 1-deoxy-D-xylulose at the hydroxy group of C-5 . This reaction therefore constitutes a potential salvage pathway for the generation of 1-deoxy-D-xylulose 5-phosphate from exogenous or endogenous 1-deoxy-D-xylulose as starting material for the biosynthesis of terpenoids, thiamine and pyridoxal. ; GO: 0004856 xylulokinase activity, 0005997 xylulose metabolic process.
Probab=97.79 E-value=1.1e-05 Score=61.76 Aligned_cols=115 Identities=29% Similarity=0.412 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-------CCC--EEE-EEECCCCCCCCCCCCHHHHHHCCCC---CCHH
Q ss_conf 99999999885411556503586304434678-------872--126-8731100001234200001100111---1010
Q gi|255764494|r 255 QRLKEAAEKAKIELSSTSQTEINLPFISANSA-------GAQ--HLN-MKLTRAQFERLVNHLIQKTVEPCKK---CLQD 321 (652)
Q Consensus 255 ~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~-------~g~--d~~-~~itR~~fe~l~~~l~~~~~~~i~~---~L~~ 321 (652)
..|...++++..- | .--+-+|+|.=.-. .|. =++ ..-||.+|-. -.++-+.=-++. +|++
T Consensus 321 ~~l~~~~~~~~~G-a---~Gv~flPYL~GERTP~~DP~aRGsf~GL~~~~~~r~~l~R---Av~EG~~F~l~dsl~~~~~ 393 (494)
T TIGR01312 321 EELNEEAEKSPPG-A---EGVIFLPYLNGERTPHLDPQARGSFIGLTSANTTRADLTR---AVLEGVTFALRDSLDILRE 393 (494)
T ss_pred HHHHHHHHHCCCC-C---CCCEECCCCCCCCCCCCCCCCCCHHEEHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_conf 8999997527778-8---9845333026577889873421124005543148789999---9999999999999999998
Q ss_pred -CCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf -1356311014663078530567788654101111111356531011111000223467
Q gi|255764494|r 322 -AGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG 379 (652)
Q Consensus 322 -a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~ 379 (652)
.+++ |..|.||||++|-|.-++++.++||.++...-+.+|.+|+|||+||++-.+
T Consensus 394 ~~g~~---~~~i~lIGGGakS~~W~Q~~ADI~g~~v~~~~g~~eg~ALGAA~lA~~~~~ 449 (494)
T TIGR01312 394 LNGLP---INEIRLIGGGAKSPVWRQILADIFGLPVVVPEGGEEGAALGAAILAAWGLG 449 (494)
T ss_pred HCCCC---EEEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 15994---005888705644678999999981881575167011001799999998488
No 52
>PRK13317 pantothenate kinase; Provisional
Probab=97.70 E-value=0.00052 Score=49.06 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=39.4
Q ss_pred CCEEEEEEEECCCC-CCHHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 63110146630785-30567788654101---11111135653101111100022
Q gi|255764494|r 325 SPSDIDEVVLVGGM-TRMPKIQQSVQDFF---NKSPSKGVNPDEVVAMGAAIQAG 375 (652)
Q Consensus 325 ~~~~I~~V~lvGGs-sriP~v~~~i~~~f---g~~~~~~~npdeaVa~GAA~~a~ 375 (652)
...++..|+++||. +..|.+++.+.++. +.++...-|+..+.|+||+++|.
T Consensus 218 ~~~~i~~i~f~G~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~y~gAlGA~L~a~ 272 (273)
T PRK13317 218 EEKNTENIVYIGSTLCNNALLQEVIEDYTVLRGCTPIFLENGGFSGAIGALLLAT 272 (273)
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCC
T ss_conf 8749876999898666887899999999986696488616376869999987126
No 53
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.61 E-value=0.00064 Score=48.42 Aligned_cols=173 Identities=15% Similarity=0.200 Sum_probs=88.6
Q ss_pred CCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEE-CCCEEEE-----ECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 221024788886034456550799872441145431010-2314654-----2013322455213447665536787642
Q gi|255764494|r 168 IINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEM-GDGVFEV-----KATNGDTFLGGEDFDSCLVEHICDTFKK 241 (652)
Q Consensus 168 li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~-~~~~~~v-----l~~~gd~~lGG~d~D~~l~~~~~~~~~~ 241 (652)
.|+|-||-|.+- .+-..+..--|+|+||= |.=++.+ .+|.+.- .+.+|. |+ |++.+-+
T Consensus 107 ~itEIt~Ha~GA-~~l~~~~vrTIiDIGGQ--DsK~I~ld~~G~V~dF~MNdkCAAGT----Gr---------FLE~~A~ 170 (293)
T TIGR03192 107 AITEIACHARGA-NYMGGNAVRTILDMGGQ--DCKAIHCDEKGKVTNFLMNDKCAAGT----GR---------GMEVISD 170 (293)
T ss_pred CEEEEHHHHHHH-HHHCCCCCCEEEEECCC--CEEEEEECCCCCEEEEEECCCCCCCC----CH---------HHHHHHH
T ss_conf 567706789999-97478977489993686--04899985899587787256113455----53---------9999999
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHH-HHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCC-CCCCCCCCHHHHHHCCCCCC
Q ss_conf 013430244789999999999885-4115565035863044346788721268731100-00123420000110011110
Q gi|255764494|r 242 ENGIDLKQDTLALQRLKEAAEKAK-IELSSTSQTEINLPFISANSAGAQHLNMKLTRAQ-FERLVNHLIQKTVEPCKKCL 319 (652)
Q Consensus 242 ~~~~d~~~~~~a~~rL~~~~e~aK-~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~-fe~l~~~l~~~~~~~i~~~L 319 (652)
.-++++.+ +..+ +-+++ +-.+-+....+..++-.-. .+..-.++++ ..-++..+..|+.. .+
T Consensus 171 ~L~i~l~e----l~~~---a~~~~~~p~~isS~CtVFaESevis-----~l~~G~~~edI~aGl~~sia~rv~~----l~ 234 (293)
T TIGR03192 171 LMQIPIAD----LGPR---SFDVETEPEAVSSICVVFAKSEALG-----LLKAGYTKNMVIAAYCQAMAERVVS----LL 234 (293)
T ss_pred HCCCCHHH----HHHH---HHHCCCCCCCCCCEEEEEEEHHHHH-----HHHCCCCHHHHHHHHHHHHHHHHHH----HH
T ss_conf 80999999----9999---8754589866377157886176999-----9986998999999999999999999----97
Q ss_pred HHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 10135631101466307853056778865410111-1111356531011111000223
Q gi|255764494|r 320 QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK-SPSKGVNPDEVVAMGAAIQAGV 376 (652)
Q Consensus 320 ~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~-~~~~~~npdeaVa~GAA~~a~~ 376 (652)
++.++. ..|+|.||.++.|.|.+.+++.+|. .+....+|..+=|+|||++|+-
T Consensus 235 ~r~~~~----~~iv~tGGva~N~~vv~ale~~Lg~~~i~~~~~~q~~GAlGAAL~a~~ 288 (293)
T TIGR03192 235 ERIGVE----EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHCCCC----CCEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 633889----988998976054899999999869965737998327669999999899
No 54
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=97.51 E-value=0.008 Score=40.10 Aligned_cols=215 Identities=21% Similarity=0.241 Sum_probs=107.9
Q ss_pred EEEEEECCCEEEEEEEEEC---CCE----EEEECCCCCCCCCCHHHHHHHHHHHHHH---------HHHHCCCCHHHHHH
Q ss_conf 7998724411454310102---314----6542013322455213447665536787---------64201343024478
Q gi|255764494|r 189 VIVFDFGGGTFDVSLLEMG---DGV----FEVKATNGDTFLGGEDFDSCLVEHICDT---------FKKENGIDLKQDTL 252 (652)
Q Consensus 189 vlV~D~Gggt~dvsi~~~~---~~~----~~vl~~~gd~~lGG~d~D~~l~~~~~~~---------~~~~~~~d~~~~~~ 252 (652)
-|++=+|-+|+++.+-.-. .|+ ...+--+.-..=||..=.-.|.+||.+. ...+++.++.. .
T Consensus 270 ~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~--~ 347 (544)
T COG1069 270 SLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYE--S 347 (544)
T ss_pred EEEEEEECCEEEEEECCCCEECCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHH--H
T ss_conf 27999605558997067760158640156543272466640563036589999998387653122214023457889--9
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC--CCCEEEEEECCC----CCCCCCCCCHHHH------HHCCCCCCH
Q ss_conf 9999999999885411556503586304434678--872126873110----0001234200001------100111101
Q gi|255764494|r 253 ALQRLKEAAEKAKIELSSTSQTEINLPFISANSA--GAQHLNMKLTRA----QFERLVNHLIQKT------VEPCKKCLQ 320 (652)
Q Consensus 253 a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~--~g~d~~~~itR~----~fe~l~~~l~~~~------~~~i~~~L~ 320 (652)
-..++..-+++++...+...- -+-++.+.-+-. -.-++.-.|+-. .++.||.-+..-+ ...|-++++
T Consensus 348 ~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~ 426 (544)
T COG1069 348 LAQRLELLTEAAAAIPPLASG-LHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFE 426 (544)
T ss_pred HHHHHHHHHHHHHCCCCCCCC-CEECCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998656516766678-5763532578587789660357855635788077899999999999866999999999
Q ss_pred HCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCCCC
Q ss_conf 01356311014663078530567788654101111111356531011111000223467522100002356653222334
Q gi|255764494|r 321 DAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLG 400 (652)
Q Consensus 321 ~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~~~ 400 (652)
+.|+. |+.+...||-.+-|.+.+++.+..|+++... ..|+|+++|+|+.|+.-.+...++. ...
T Consensus 427 ~~g~~---Id~l~~sGG~~KN~llmql~aDvtg~~v~i~-~s~~a~llGsAm~~avAag~~~dl~------------~A~ 490 (544)
T COG1069 427 DQGIA---IDTLFASGGIRKNPLLMQLYADVTGRPVVIP-ASDQAVLLGAAMFAAVAAGVHPDLP------------AAA 490 (544)
T ss_pred HCCCE---EEEEEECCCCCCCHHHHHHHHHHCCCEEEEE-CCCCHHHHHHHHHHHHHCCCCCCHH------------HHH
T ss_conf 76970---1478871773238999999877409757852-6642025678999998705574469------------999
Q ss_pred CEEEEEECCCCCCCHHHHHHHH
Q ss_conf 2024663389811024566545
Q gi|255764494|r 401 GVFTSIIDRNSTIPTKKSQVFS 422 (652)
Q Consensus 401 ~~~~~ii~~~~~iP~~k~~~f~ 422 (652)
..|.....+..+-|..+...|.
T Consensus 491 ~aMs~~~~~~~~~~~~~~~~y~ 512 (544)
T COG1069 491 QAMSSAVEKTLPPPPERAARYE 512 (544)
T ss_pred HHHCCCCCEECCCHHHHHHHHH
T ss_conf 9840554401698699999999
No 55
>KOG0797 consensus
Probab=97.46 E-value=0.0019 Score=44.75 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=91.5
Q ss_pred CEEECHHHHHHHHHHHHHHHHHHHHCCCCC-----EEEEEECCCCCCCHHHHHHH-HHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 958719999999999999999998388473-----36985377887402578863-442112222222210247888860
Q gi|255764494|r 107 GKQYSPSQISAIVLQKMKETAESFLGETVS-----KAVITVPAYFNDAQRQATKD-AGRIAGLDVLRIINEPTAAALAYG 180 (652)
Q Consensus 107 ~~~~~peei~a~iL~~lk~~ae~~l~~~v~-----~~VitVP~~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAal~Y~ 180 (652)
...+|..++.+.+-+-+.-.-+..|+-+++ .+|+-||--|.-..-+..+. --.--||+-..++.|..||.+.-|
T Consensus 194 ~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaG 273 (618)
T KOG0797 194 PPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAG 273 (618)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCC
T ss_conf 85131999999999999999987617885673544699981532558899999999998725663798712467775277
Q ss_pred CCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 344565507998724411454310102314654201332245521344766553678-7642013430244789999999
Q gi|255764494|r 181 LDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICD-TFKKENGIDLKQDTLALQRLKE 259 (652)
Q Consensus 181 ~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~-~~~~~~~~d~~~~~~a~~rL~~ 259 (652)
+. .-+|+|+|+-++.|++ +++|+.. ..+.=-...||+|++++++-.+.. .|--+ ..++.. +.-+. |
T Consensus 274 ls-----s~CVVdiGAQkTsIaC--VEdGvs~-~ntri~L~YGGdDitr~f~~ll~rs~FPy~-d~~v~~-~~d~l-L-- 340 (618)
T KOG0797 274 LS-----SACVVDIGAQKTSIAC--VEDGVSL-PNTRIILPYGGDDITRCFLWLLRRSGFPYQ-DCDVLA-PIDWL-L-- 340 (618)
T ss_pred CC-----CEEEEECCCCCEEEEE--EECCCCC-CCCEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCCCC-CCCHH-H--
T ss_conf 65-----3047870575114888--5257556-675377336872499999999986699840-244366-11379-9--
Q ss_pred HHHHHHHHCCCCCEEEE
Q ss_conf 99988541155650358
Q gi|255764494|r 260 AAEKAKIELSSTSQTEI 276 (652)
Q Consensus 260 ~~e~aK~~LS~~~~~~i 276 (652)
++.+|+....-..+..
T Consensus 341 -l~~LKe~Fc~l~~a~~ 356 (618)
T KOG0797 341 -LNQLKEKFCHLRAAEL 356 (618)
T ss_pred -HHHHHHHHCCCCHHHH
T ss_conf -9999887446337665
No 56
>pfam06277 EutA Ethanolamine utilisation protein EutA. This family consists of several bacterial EutA ethanolamine utilisation proteins. The EutA protein is thought to protect the lyase (EutBC) from inhibition by CNB12.
Probab=97.43 E-value=0.0034 Score=42.91 Aligned_cols=41 Identities=34% Similarity=0.515 Sum_probs=29.4
Q ss_pred CCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHH
Q ss_conf 4456550799872441145431010231465420133224552134
Q gi|255764494|r 182 DKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDF 227 (652)
Q Consensus 182 ~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~ 227 (652)
.+.....|+=+|+||||+..++ |.+|. |++|+. -++||+-+
T Consensus 138 S~~~~~~VlNiDIGGGTtn~Al--f~~G~--v~~t~c-l~IGGRLi 178 (473)
T pfam06277 138 SKEHHTTVLNIDIGGGTTNLAL--FENGE--VIDTAC-LDIGGRLI 178 (473)
T ss_pred HHCCCCEEEEEEECCCCEEEEE--EECCE--EEEEEE-EEECCEEE
T ss_conf 2324874899886688305799--85888--989875-70534799
No 57
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.39 E-value=0.0066 Score=40.72 Aligned_cols=40 Identities=33% Similarity=0.439 Sum_probs=28.5
Q ss_pred CCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHH
Q ss_conf 445655079987244114543101023146542013322455213
Q gi|255764494|r 182 DKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGED 226 (652)
Q Consensus 182 ~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d 226 (652)
.+.....|+=+|+||||+..+++ .+|. |.+|+. -++||+-
T Consensus 141 S~~~~~~VlNiDIGGGTtn~Alf--~~G~--v~~t~c-l~IGGRL 180 (471)
T PRK10719 141 SKERHCRVLNIDIGGGTSNYALF--DAGE--VIDTAC-LNVGGRL 180 (471)
T ss_pred HHCCCCEEEEEEECCCCEEEEEE--ECCE--EEEEEE-EEECCEE
T ss_conf 23348738998866883058998--4888--988775-7034469
No 58
>pfam08841 DDR Diol dehydratase reactivase ATPase-like domain. Diol dehydratase (DDH, EC:4.2.1.28) and its isofunctional homologue glycerol dehydratase (GDH, EC.4.2.1.30) are enzymes which catalyse the conversion of glycerol 1,2-propanediol, and 1,2-ethanediol to aldehydes. These reactions require coenzyme B12. Cleavage of the Co-C bond of coenzyme B12 by substrates or coenzyme analogues results in inactivation during which coenzyme B12 remains tightly bound to the apoenzyme. This family comprises of the large subunit of the diol dehydratase and glycerol dehydratase reactivating factors whose function is to reactivate the holoenzyme by exchange of a damaged cofactor for intact coenzyme.
Probab=97.15 E-value=0.00046 Score=49.48 Aligned_cols=185 Identities=24% Similarity=0.253 Sum_probs=83.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCC-CCCCCEEEEEEECCCEEEEEEEEECCCEEEE-ECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 222222221024788886034-4565507998724411454310102314654-20133224552134476655367876
Q gi|255764494|r 162 GLDVLRIINEPTAAALAYGLD-KKDARTVIVFDFGGGTFDVSLLEMGDGVFEV-KATNGDTFLGGEDFDSCLVEHICDTF 239 (652)
Q Consensus 162 Gl~v~~li~EptAAal~Y~~~-~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~v-l~~~gd~~lGG~d~D~~l~~~~~~~~ 239 (652)
|.++.-.=-|+.+|++.- +. ...+.-..++|+||||+|.|++.-++.+.-+ +|-+ |+-++..|.
T Consensus 109 g~~v~igg~EaemAi~GA-lTTPGt~~plaIlDlGaGStDasii~~~g~v~a~HlAGA------G~mVTmlI~------- 174 (332)
T pfam08841 109 GVPVEIGGVEAEAAILGA-LTTPGTPKPLAILDLGAGSTDASIINAEGTVTATHLAGA------GEMVTMLIN------- 174 (332)
T ss_pred CCCEEECCCCHHHHHHHC-CCCCCCCCCEEEEECCCCCCCHHHHCCCCCEEEEEECCC------CHHHHHHHH-------
T ss_conf 982697450588887403-369899998389964898533888288984899974386------137599998-------
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC-------CCCCCCCCCCEEE--EEECCCCCCCCCCC-CHH
Q ss_conf 4201343024478999999999988541155650358630-------4434678872126--87311000012342-000
Q gi|255764494|r 240 KKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLP-------FISANSAGAQHLN--MKLTRAQFERLVNH-LIQ 309 (652)
Q Consensus 240 ~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~-------~~~~~~~~g~d~~--~~itR~~fe~l~~~-l~~ 309 (652)
..-+++ .+.+ +|..|+-=-..-+..+++- ++.+ ..+..-|- +.++-+.+.-+-.. -++
T Consensus 175 -seLGl~----d~~L------AE~IKkyPlaKVEslf~irhEDG~v~Ff~~-pl~p~~faRvv~~k~~~lvPi~~~~~~E 242 (332)
T pfam08841 175 -SELGLE----DRAL------AEDIKKYPLAKVESLFHIRHEDGRVQFFEE-PLPPSVFARVVILKEDGLVPLDGDLSIE 242 (332)
T ss_pred -HHHCCC----CHHH------HHHHHHCCHHHHCCCEEEEECCCCEEEECC-CCCHHHHEEEEEECCCCEEECCCCCCHH
T ss_conf -864899----5788------988743624542344268852772697269-8996792578996279514169854489
Q ss_pred HHH------------HCCCCCCHHCC--CCCEEEEEEEECCCCCCHHHHHHHHHHCC-------CC-CCCCCCCCCCHHH
Q ss_conf 011------------00111101013--56311014663078530567788654101-------11-1111356531011
Q gi|255764494|r 310 KTV------------EPCKKCLQDAG--LSPSDIDEVVLVGGMTRMPKIQQSVQDFF-------NK-SPSKGVNPDEVVA 367 (652)
Q Consensus 310 ~~~------------~~i~~~L~~a~--~~~~~I~~V~lvGGssriP~v~~~i~~~f-------g~-~~~~~~npdeaVa 367 (652)
++. .-+-++|+... -+..+|+.|+|||||+.=--|-+++.+.+ |+ .+.-..-|--|||
T Consensus 243 kir~vRr~aK~kVfvtNa~RaL~~vsP~gnir~i~fVVLvGGsALDfEip~~vtdaLs~y~vVaGrgNIrG~eGPRnAVA 322 (332)
T pfam08841 243 KIKSVRRSAKERVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQLVTEALSHYGVVAGRGNIRGVEGPRNAVA 322 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHH
T ss_conf 99999998645645998999998429888867787599955714422378999998750752343256456767368899
Q ss_pred HHHHH
Q ss_conf 11100
Q gi|255764494|r 368 MGAAI 372 (652)
Q Consensus 368 ~GAA~ 372 (652)
.|-.+
T Consensus 323 tGLvl 327 (332)
T pfam08841 323 TGLVL 327 (332)
T ss_pred HHHHH
T ss_conf 99898
No 59
>pfam02782 FGGY_C FGGY family of carbohydrate kinases, C-terminal domain. This domain adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain.
Probab=97.12 E-value=0.00042 Score=49.76 Aligned_cols=55 Identities=33% Similarity=0.517 Sum_probs=44.4
Q ss_pred CCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 10101356311014663078530567788654101111111356531011111000223
Q gi|255764494|r 318 CLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGV 376 (652)
Q Consensus 318 ~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ 376 (652)
.|++.+. .++.|.++||.+|-|...+++.+.+|+++... .+.|+.|+|||+.|++
T Consensus 137 ~l~~~g~---~~~~i~~~GG~sks~~~~Qi~Advlg~~V~~~-~~~e~~alGaA~lA~~ 191 (193)
T pfam02782 137 ALAELGA---PIDRIIASGGGSRNPLLLQLLADALGRPVEVP-EPAEATALGAALLAAV 191 (193)
T ss_pred HHHHHCC---CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEC-CCCCHHHHHHHHHHHH
T ss_conf 9997289---86415875763017899999999969955817-9973689999999973
No 60
>pfam01968 Hydantoinase_A Hydantoinase/oxoprolinase. This family includes the enzymes hydantoinase and oxoprolinase EC:3.5.2.9. Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds.
Probab=97.08 E-value=0.0015 Score=45.54 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=43.2
Q ss_pred HHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHH
Q ss_conf 00011001111010135631101466307853056778865410111-111135653101111100
Q gi|255764494|r 308 IQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK-SPSKGVNPDEVVAMGAAI 372 (652)
Q Consensus 308 ~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~-~~~~~~npdeaVa~GAA~ 372 (652)
.++..+.|++.+...|+++.+. .++.+||+. |.....+.+.+|. .+.....|.-+-|.|||+
T Consensus 216 ~~~m~~ai~~~~~~~g~dp~~~-~lv~~GGag--~~~~~~la~~lg~~~vi~P~~~~v~sA~G~a~ 278 (285)
T pfam01968 216 NETMADAVRLLSVERGLDPRDF-PLVVFGGAG--PLHAPELAEELGIKEVIPPPYPGVANAVGAAL 278 (285)
T ss_pred HHHHHHHHHHHHHHCCCCCCCC-EEEEECCCH--HHHHHHHHHHCCCCEEECCCCCCCHHHHHHHH
T ss_conf 9999999999999849997787-899987829--99999999985999897689987051772744
No 61
>pfam01869 BcrAD_BadFG BadF/BadG/BcrA/BcrD ATPase family. This family includes the BadF and BadG proteins, which are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase. A member from Aquifex aeolicus contains two copies of this region suggesting that the family may structurally dimerize. This family appears to be related to pfam00370.
Probab=97.04 E-value=0.02 Score=37.13 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=44.5
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHHH
Q ss_conf 0000123420000110011110101356311014663078530567788654101-----11111135653101111100
Q gi|255764494|r 298 AQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFF-----NKSPSKGVNPDEVVAMGAAI 372 (652)
Q Consensus 298 ~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~f-----g~~~~~~~npdeaVa~GAA~ 372 (652)
+-++.++..+...+...+++ -+..+ ..|+|+||-.+.+.+.+.+++.+ +.++....+|....|.|||+
T Consensus 214 ~Il~~~~~~la~~~~~~~~~----l~~~~---~~vvl~GGv~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~A~GAal 286 (288)
T pfam01869 214 DILAGAAESIALRVAALIKR----LGPVP---DQVVLTGGVAKNEVLVKALRDELSEKILEVKVNVPPDPQYAGAIGAAL 286 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHH----CCCCC---CCEEEECCHHCCHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHH
T ss_conf 99999999999999999984----38899---979998941315999999999999755799476289866365999997
Q ss_pred CC
Q ss_conf 02
Q gi|255764494|r 373 QA 374 (652)
Q Consensus 373 ~a 374 (652)
.|
T Consensus 287 ~A 288 (288)
T pfam01869 287 LA 288 (288)
T ss_pred CC
T ss_conf 39
No 62
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.66 E-value=0.0036 Score=42.68 Aligned_cols=46 Identities=24% Similarity=0.358 Sum_probs=42.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 1466307853056778865410111111135653101111100022
Q gi|255764494|r 330 DEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAG 375 (652)
Q Consensus 330 ~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~ 375 (652)
..|+++||.++.+.|.+.+++.+|.++...-+|..+=|+|||+.|.
T Consensus 357 ~~VvftGGVA~N~GIv~ALEe~LG~~IiVPp~pQ~~GAiGAALLAs 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHC
T ss_conf 9979989620548999999998599377189734331999999853
No 63
>KOG2517 consensus
Probab=96.62 E-value=0.02 Score=37.00 Aligned_cols=70 Identities=26% Similarity=0.375 Sum_probs=53.1
Q ss_pred HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 00110011110101356311014663078530567788654101111111356531011111000223467522
Q gi|255764494|r 309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVK 382 (652)
Q Consensus 309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~ 382 (652)
-++..+++..-.+.+ ..|+.+.+.||-|+-|.+-+.+.+.+|.++.+..++|. |+.|||+.|+..++...
T Consensus 398 fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~~~ 467 (516)
T KOG2517 398 FQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGKWS 467 (516)
T ss_pred HHHHHHHHHHHHHCC---CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHHHHCCCCC
T ss_conf 889999999987557---78641453464214899999999986885004653348-99999999876527741
No 64
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=96.31 E-value=0.086 Score=32.28 Aligned_cols=73 Identities=30% Similarity=0.340 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHH----HHHHHHH
Q ss_conf 122222222102478888603445655079987244114543101023146542013322455213447----6655367
Q gi|255764494|r 161 AGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDS----CLVEHIC 236 (652)
Q Consensus 161 AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~----~l~~~~~ 236 (652)
||-+...+|----|-|..| ..+....|+=.|+||||+..|+ |+.|. ++.|++ .++||+-+-. .-+.|+.
T Consensus 121 AGPdLESiIAGkGaGA~t~--Se~r~t~v~NlDIGGGTtN~sl--FD~Gk--v~dTaC-LdiGGRLik~drst~~v~Yi~ 193 (473)
T COG4819 121 AGPDLESIIAGKGAGAQTL--SEQRLTRVLNLDIGGGTTNYSL--FDAGK--VSDTAC-LDIGGRLIKTDRSTGRVVYIH 193 (473)
T ss_pred CCCCHHHHHCCCCCCCCCH--HHHHCEEEEEEECCCCCCCEEE--ECCCC--CCCCEE-EECCCEEEEECCCCCEEEEEC
T ss_conf 6888788760678542112--0220337999750697231244--31663--047421-301767888505651699973
Q ss_pred HHHH
Q ss_conf 8764
Q gi|255764494|r 237 DTFK 240 (652)
Q Consensus 237 ~~~~ 240 (652)
++++
T Consensus 194 ~k~q 197 (473)
T COG4819 194 KKGQ 197 (473)
T ss_pred CCHH
T ss_conf 6267
No 65
>PRK00047 glpK glycerol kinase; Provisional
Probab=96.18 E-value=0.0016 Score=45.32 Aligned_cols=61 Identities=30% Similarity=0.359 Sum_probs=48.5
Q ss_pred HHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCH
Q ss_conf 10135631101466307853056778865410111111135653101111100022346752210
Q gi|255764494|r 320 QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDL 384 (652)
Q Consensus 320 ~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~ 384 (652)
+.+|.+ ++.|.++||++|.|...+++.+.+|.++... ...|+.++|||+.|++-.|..+++
T Consensus 398 ~~~G~~---~~~i~~~GGga~s~lw~Qi~ADvlg~pV~~~-~~~e~~alGaAilAava~G~~~~~ 458 (498)
T PRK00047 398 ADSGIR---LKELRVDGGAVANNFLMQFQADILGVDVERP-VVAETTALGAAYLAGLAVGFWKDL 458 (498)
T ss_pred HHHCCC---CCEEEEECCCHHCHHHHHHHHHHHCCEEEEC-CCCCCHHHHHHHHHHHHCCCCCCH
T ss_conf 862989---6779996680347899999999769848946-888617999999999880877999
No 66
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=96.17 E-value=0.061 Score=33.40 Aligned_cols=155 Identities=22% Similarity=0.317 Sum_probs=67.4
Q ss_pred EEEEECCCCEEEEEEEE---CCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf 69980486606999998---995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMD---GKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS 80 (652)
Q Consensus 4 viGIDlGtt~s~va~~~---~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (652)
++|||+||+..++.+.+ +|.+.|+- ....||- ++. +| ..+-..+.... -++++....+..|.+..+.
T Consensus 1 i~alDIGsski~~~v~~~~~~~~l~Ilg----~~~~~s~-Gi~-~G-~I~d~~~~~~~---I~~ai~~aE~~ag~~I~~V 70 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIG----VGEVPSR-GIR-KG-VIVDIEAAARA---IREAVEEAERMAGVKIDSV 70 (187)
T ss_pred CEEEECCCCEEEEEEEEECCCCCEEEEE----EEEEECC-CEE-CC-EEECHHHHHHH---HHHHHHHHHHHCCCCCCEE
T ss_conf 9899847888999999997899899999----9987047-607-89-99828999999---9999999987438742579
Q ss_pred HHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC-C-----------
Q ss_conf 7876520198699975998279995795871999999999999999999838847336985377887-4-----------
Q gi|255764494|r 81 TVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFN-D----------- 148 (652)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~-~----------- 148 (652)
.+.-.-.++ ...+....+.+.++..+.+++ .++.+.|....-.+-..++=.+|..|. |
T Consensus 71 ~v~isg~~~-----~s~~~~~~~~i~~~~It~~DI-----~~~~~~a~~~~~~~~~~ilh~~p~~y~iD~~~~v~nPiGm 140 (187)
T smart00842 71 YVGISGRHL-----KSVNVSGVVAIPDKEITQEDI-----DRVLEAAKAVALPPDREILHVLPQEYILDGQEGIKDPIGM 140 (187)
T ss_pred EEEECCCCE-----EEEEEEEEEECCCCCCCHHHH-----HHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCCCC
T ss_conf 999668857-----999989999889879289999-----9999985632469884699998326799587476886578
Q ss_pred ----------------CHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf ----------------025788634421122222222102478888
Q gi|255764494|r 149 ----------------AQRQATKDAGRIAGLDVLRIINEPTAAALA 178 (652)
Q Consensus 149 ----------------~qR~a~~~Aa~~AGl~v~~li~EptAAal~ 178 (652)
..-+-+..+.+.+||++..++.+|-|+|++
T Consensus 141 ~g~~L~~~~~~i~~~~~~i~ni~~~i~~~~l~v~~~v~~p~Asa~a 186 (187)
T smart00842 141 SGVRLEVDVHVVTAPKSAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred CCCEEEEEEEEEEECHHHHHHHHHHHHHCCCCCHHEEECHHHHEEC
T ss_conf 1587999999999868999999999999599283279705645003
No 67
>PRK00292 glk glucokinase; Provisional
Probab=95.81 E-value=0.15 Score=30.35 Aligned_cols=193 Identities=19% Similarity=0.199 Sum_probs=89.7
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHCCC--------------CCCCEEEEEEECCCE-EEEEEEEECCCEEEEECCC-CCCCC
Q ss_conf 2112222222210247888860344--------------565507998724411-4543101023146542013-32245
Q gi|255764494|r 159 RIAGLDVLRIINEPTAAALAYGLDK--------------KDARTVIVFDFGGGT-FDVSLLEMGDGVFEVKATN-GDTFL 222 (652)
Q Consensus 159 ~~AGl~v~~li~EptAAal~Y~~~~--------------~~~~~vlV~D~Gggt-~dvsi~~~~~~~~~vl~~~-gd~~l 222 (652)
+..|++.+.|||+=.|.| |++.. ......+|+ |.|| +-++.+-..++...+++++ |+..+
T Consensus 87 ~~~g~~~v~liNDf~A~a--~~l~~l~~~~l~~i~~g~~~~~~~~~vi--GpGTGLG~a~l~~~~~~~~~~~sEgGH~~f 162 (315)
T PRK00292 87 AELGLDHLLLINDFTAQA--LAIPRLGEEDLIQVGGGEPVPGAPIAVI--GPGTGLGVAGLVHVDGGWVVLPGEGGHVDF 162 (315)
T ss_pred HHHCCCCEEEEECHHHHH--CCCCCCCHHHEEECCCCCCCCCCCEEEE--ECCCCCCEEEEEECCCEEEECCCCCCCCCC
T ss_conf 863988189984567786--2666699878067079989999957999--468876446789759914872356656567
Q ss_pred C-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCC-
Q ss_conf 5-21344766553678764201343024478999999999988541155650358630443467887212687311000-
Q gi|255764494|r 223 G-GEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF- 300 (652)
Q Consensus 223 G-G~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~f- 300 (652)
. -.+....|.+|+.+++..-...++. +-+.+.+|++..-.....-....+ ...|++.-+
T Consensus 163 ap~~~~e~~l~~~L~~~~g~vs~E~vl-SG~GL~~ly~~l~~~~~~~~~~~~------------------~~~I~~~Al~ 223 (315)
T PRK00292 163 APRSEEEAQILEYLRAEIGHVSAERVL-SGPGLVNLYRALCASDGILPELLT------------------PADITEAALA 223 (315)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEE-CCHHHHHHHHHHHHHCCCCCCCCC------------------HHHHHHHHHC
T ss_conf 989978999999999864987230042-425299999999864288877699------------------8999999863
Q ss_pred --CCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCC--HHHHHH-HHHHCC-CCC---------CCCCCCCCCH
Q ss_conf --0123420000110011110101356311014663078530--567788-654101-111---------1113565310
Q gi|255764494|r 301 --ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTR--MPKIQQ-SVQDFF-NKS---------PSKGVNPDEV 365 (652)
Q Consensus 301 --e~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssr--iP~v~~-~i~~~f-g~~---------~~~~~npdea 365 (652)
+.+|...++.+....-.+..+.-++.---..|.|.||-++ +|.+++ ...+.| .+. |..-+.-+++
T Consensus 224 ~~d~~a~~~~~~F~~~lG~~agdlaL~~~a~GGvylaGGi~~~l~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~~ 303 (315)
T PRK00292 224 GSDPLARRTLSLFCVILGRVAGNLALTLGARGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIPVYVVTHPQP 303 (315)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHCCCEEEECCCCH
T ss_conf 99979999999999999999988899755897599966678878866272889999870673678985695799948974
Q ss_pred HHHHHHHCC
Q ss_conf 111110002
Q gi|255764494|r 366 VAMGAAIQA 374 (652)
Q Consensus 366 Va~GAA~~a 374 (652)
--+|||-++
T Consensus 304 gL~GAA~~~ 312 (315)
T PRK00292 304 GLLGAGAYL 312 (315)
T ss_pred HHHHHHHHH
T ss_conf 288899998
No 68
>PRK10854 exopolyphosphatase; Provisional
Probab=95.18 E-value=0.21 Score=29.32 Aligned_cols=54 Identities=24% Similarity=0.456 Sum_probs=36.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHH-HCCCC--CCCEEEEEEECCCEEEEEEEE
Q ss_conf 57886344211222222221024788886-03445--655079987244114543101
Q gi|255764494|r 151 RQATKDAGRIAGLDVLRIINEPTAAALAY-GLDKK--DARTVIVFDFGGGTFDVSLLE 205 (652)
Q Consensus 151 R~a~~~Aa~~AGl~v~~li~EptAAal~Y-~~~~~--~~~~vlV~D~Gggt~dvsi~~ 205 (652)
...+..+-+..|+++ ++|+...-|-+.| |+... .....||+|+|||++.+.+.+
T Consensus 99 ~~Fl~~v~~~~G~~I-eVIsG~EEArLiylGV~~~~~~~~~~LviDIGGGSTEli~g~ 155 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGE 155 (513)
T ss_pred HHHHHHHHHHHCCCE-EEECHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEC
T ss_conf 999999999849974-995789999999965552387669659999569826889731
No 69
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.95 E-value=0.008 Score=40.10 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=45.5
Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCH
Q ss_conf 1101466307853056778865410111111135653101111100022346752210
Q gi|255764494|r 327 SDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDL 384 (652)
Q Consensus 327 ~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~ 384 (652)
..++.+.++||+||.+...++..+.+|+++.. -|-||-|.|+++.+.+--|.++++
T Consensus 374 ~~~~~l~vvGGGsrn~ll~Q~~ADi~g~pVv~--g~~EaTalGn~~~q~~a~G~~~~l 429 (471)
T PRK10640 374 EPFSQLHIVGGGCQNALLNQLCADACGIRVIA--GPVEASTLGNIGIQLMTLDELNNV 429 (471)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHCCCEEC--CCCHHHHHHHHHHHHHHCCCCCCH
T ss_conf 99676999785766599999989982996652--870587999999999976983899
No 70
>KOG2531 consensus
Probab=94.95 E-value=0.018 Score=37.46 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=44.1
Q ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 1356311014663078530567788654101111111356531011111000223
Q gi|255764494|r 322 AGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGV 376 (652)
Q Consensus 322 a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ 376 (652)
-|.....=+.|+.|||+||--.|-+.|.++||.++..- ...++.|.|+|+.|+.
T Consensus 436 lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531 436 LGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE-CCCCHHHHHHHHHHHH
T ss_conf 35789997469996674323899999999848975764-4873556778999999
No 71
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=94.93 E-value=0.23 Score=29.02 Aligned_cols=51 Identities=27% Similarity=0.412 Sum_probs=34.5
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHH-HCC--CCCCCEEEEEEECCCEEEEEEEE
Q ss_conf 86344211222222221024788886-034--45655079987244114543101
Q gi|255764494|r 154 TKDAGRIAGLDVLRIINEPTAAALAY-GLD--KKDARTVIVFDFGGGTFDVSLLE 205 (652)
Q Consensus 154 ~~~Aa~~AGl~v~~li~EptAAal~Y-~~~--~~~~~~vlV~D~Gggt~dvsi~~ 205 (652)
+..+-...|+++ ++|+...=|.+.| |+- ...+...||+|+|||++.+.+.+
T Consensus 97 l~~v~~~~G~~I-eVIsG~EEArLiy~GV~~~~~~~~~~LvvDIGGGSTEli~g~ 150 (494)
T PRK11031 97 IAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGT 150 (494)
T ss_pred HHHHHHHHCCCE-EEECHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEE
T ss_conf 999999969987-997709999999987665046778859999579836899850
No 72
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=94.82 E-value=0.35 Score=27.65 Aligned_cols=52 Identities=25% Similarity=0.327 Sum_probs=36.9
Q ss_pred CEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCC--------------------CCCCCCHHHHHHHHCCCCC
Q ss_conf 311014663078530567788654101111111--------------------3565310111110002234
Q gi|255764494|r 326 PSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSK--------------------GVNPDEVVAMGAAIQAGVL 377 (652)
Q Consensus 326 ~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~--------------------~~npdeaVa~GAA~~a~~l 377 (652)
.-+-|-++|+|-.||.|.||..+......++.+ --||-...|.||-+.+-.+
T Consensus 776 ~y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~WYPF~k~grIddPKtTAaVGAMLC~Lsl 847 (1014)
T COG4457 776 HYDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTWYPFRKQGRIDDPKTTAAVGAMLCALSL 847 (1014)
T ss_pred HHCCCEEEECCCCCCCCCHHHHHHHCCCCCCCCEEECCCEECCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 314657997388665710899986337899883676266000653013115767996227899999998776
No 73
>KOG0680 consensus
Probab=94.47 E-value=0.42 Score=27.07 Aligned_cols=205 Identities=21% Similarity=0.320 Sum_probs=87.9
Q ss_pred CEEEEEECCC-CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHH-HH---HCCCCC-----CCEEEEEEECCCEEEEEEEE
Q ss_conf 3369853778-87402578863442112222222210247888-86---034456-----55079987244114543101
Q gi|255764494|r 136 SKAVITVPAY-FNDAQRQATKDAGRIAGLDVLRIINEPTAAAL-AY---GLDKKD-----ARTVIVFDFGGGTFDVSLLE 205 (652)
Q Consensus 136 ~~~VitVP~~-f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal-~Y---~~~~~~-----~~~vlV~D~Gggt~dvsi~~ 205 (652)
.+.|+|=|.+ |...|..+..--.+-=+|. . +.-.+||+| ++ ..+..+ +...+|+|-|-+-+.| +-
T Consensus 94 ~~ivlTep~~~~psi~~~t~eilFEey~fd--~-v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThI--ip 168 (400)
T KOG0680 94 HNIVLTEPCMTFPSIQEHTDEILFEEYQFD--A-VLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHI--IP 168 (400)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCC--E-EEECCHHHHCCHHHHCCCCCCCCCCCCCEEEEEECCCCEEEE--EH
T ss_conf 417971565665202566777787874433--5-861587880010111047844455454159999178755897--52
Q ss_pred ECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-C-------HHHHH-HHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 0231465420133224552134476655367876420134-3-------02447-8999999999988541155650358
Q gi|255764494|r 206 MGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGI-D-------LKQDT-LALQRLKEAAEKAKIELSSTSQTEI 276 (652)
Q Consensus 206 ~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~-d-------~~~~~-~a~~rL~~~~e~aK~~LS~~~~~~i 276 (652)
+-+|...-.|.- --++||..+++.|-+++. | +++++ | +.++- -..+.+...-+.+|...- +-.+
T Consensus 169 ~v~g~~~~qaV~-RiDvGGK~LTn~LKE~iS--y-R~lNvmdET~vVNeiKEdvcfVSqnF~~~m~~~~~k~~---~~~~ 241 (400)
T KOG0680 169 VVKGIPYYQAVK-RIDVGGKALTNLLKETIS--Y-RHLNVMDETYVVNEIKEDVCFVSQNFKEDMDIAKTKFQ---ENKV 241 (400)
T ss_pred HHCCCCHHHCEE-EEECCHHHHHHHHHHHHH--H-HHHCCCCHHHHHHHHHHHEEEECHHHHHHHHHHHHCCC---CCEE
T ss_conf 335726422057-860342888888988864--6-55223201333554201117852516888999861222---3515
Q ss_pred EECCCCCCCCCCCE--------------EEEEECCCCC---CCCCCCCHHH-----HHHCCCCCCHHC--CCCCEEEEEE
Q ss_conf 63044346788721--------------2687311000---0123420000-----110011110101--3563110146
Q gi|255764494|r 277 NLPFISANSAGAQH--------------LNMKLTRAQF---ERLVNHLIQK-----TVEPCKKCLQDA--GLSPSDIDEV 332 (652)
Q Consensus 277 ~i~~~~~~~~~g~d--------------~~~~itR~~f---e~l~~~l~~~-----~~~~i~~~L~~a--~~~~~~I~~V 332 (652)
.+++.+.|+...+. -.++++-+.| |-+..|---. +.+.|-+.|... .+.+.-+.-|
T Consensus 242 ~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~NI 321 (400)
T KOG0680 242 MIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLENI 321 (400)
T ss_pred EEEEECCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCHHHCCHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCE
T ss_conf 78986477532231267558889987765146103211162330696443856479169999999869797789987468
Q ss_pred EECCCCCCHHHHHHHHHHCC
Q ss_conf 63078530567788654101
Q gi|255764494|r 333 VLVGGMTRMPKIQQSVQDFF 352 (652)
Q Consensus 333 ~lvGGssriP~v~~~i~~~f 352 (652)
+++||+|..|..++.|....
T Consensus 322 v~iGGn~~fPgF~~RL~~El 341 (400)
T KOG0680 322 VCIGGNSNFPGFRQRLAREL 341 (400)
T ss_pred EEECCCCCCCCHHHHHHHHH
T ss_conf 99347667864689999999
No 74
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.35 E-value=0.37 Score=27.49 Aligned_cols=82 Identities=26% Similarity=0.344 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH------HHHHHHHHCCCCCCCCCCCHHHHHHHH-HCCC-CC-CCEE
Q ss_conf 9999999999983884733698537788740257------886344211222222221024788886-0344-56-5507
Q gi|255764494|r 119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQ------ATKDAGRIAGLDVLRIINEPTAAALAY-GLDK-KD-ARTV 189 (652)
Q Consensus 119 iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~------a~~~Aa~~AGl~v~~li~EptAAal~Y-~~~~-~~-~~~v 189 (652)
.+.-|+..++...+.++..+ ..| -|.+-|. .+..+.+..|+++ .+|+...=|-+.| |.-. -. ....
T Consensus 57 ~~~aL~~f~e~~~~~~~~~v-~~v---ATsA~R~A~N~~eFl~rv~~~~G~~i-evIsGeeEArl~~lGv~~~~~~~~~~ 131 (492)
T COG0248 57 ALSALKRFAELLDGFGAEEV-RVV---ATSALRDAPNGDEFLARVEKELGLPI-EVISGEEEARLIYLGVASTLPRKGDG 131 (492)
T ss_pred HHHHHHHHHHHHHHCCCCEE-EEE---HHHHHHCCCCHHHHHHHHHHHHCCCE-EEECCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 99999999999965898779-985---26887718998999999999869963-87160778899998887247877887
Q ss_pred EEEEECCCEEEEEEEE
Q ss_conf 9987244114543101
Q gi|255764494|r 190 IVFDFGGGTFDVSLLE 205 (652)
Q Consensus 190 lV~D~Gggt~dvsi~~ 205 (652)
+|+|+|||++.+++..
T Consensus 132 lv~DIGGGStEl~~g~ 147 (492)
T COG0248 132 LVIDIGGGSTELVLGD 147 (492)
T ss_pred EEEEECCCEEEEEEEC
T ss_conf 9998068737999713
No 75
>pfam02541 Ppx-GppA Ppx/GppA phosphatase family. This family consists of the N-terminal region of exopolyphosphatase (Ppx) EC:3.6.1.11 and guanosine pentaphosphate phospho-hydrolase (GppA) EC:3.6.1.40.
Probab=94.31 E-value=0.4 Score=27.22 Aligned_cols=105 Identities=21% Similarity=0.271 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEE-EEECCCCCCCHHHHHHHHH-HHCCCCCCCCCCCHHHHHHHH-HCCCC--CCCEEEE
Q ss_conf 99999999999998388473369-8537788740257886344-211222222221024788886-03445--6550799
Q gi|255764494|r 117 AIVLQKMKETAESFLGETVSKAV-ITVPAYFNDAQRQATKDAG-RIAGLDVLRIINEPTAAALAY-GLDKK--DARTVIV 191 (652)
Q Consensus 117 a~iL~~lk~~ae~~l~~~v~~~V-itVP~~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAal~Y-~~~~~--~~~~vlV 191 (652)
-..|+..++.++.+ .++++. ++.-|-=...-++...+.. +..|+++ ++|+.-.=|.+.| |.-.. .....+|
T Consensus 41 ~~~L~~f~~~~~~~---~v~~i~~vATsA~R~A~N~~efl~~i~~~tGi~i-~IIsg~eEA~l~~~gv~~~~~~~~~~lv 116 (285)
T pfam02541 41 ISALKEFAEILQGF---GVENVRAVATSALRDAVNADEFLARVKKETGLPV-EIISGEEEARLIYLGVVSTLPSKGRGLV 116 (285)
T ss_pred HHHHHHHHHHHHHC---CCCEEEEEEHHHHHCCCCHHHHHHHHHHHHCCCE-EEECHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 99999999999867---9977999842997759288999999999859973-9964799999988240304677788899
Q ss_pred EEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHH
Q ss_conf 872441145431010231465420133224552134476
Q gi|255764494|r 192 FDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSC 230 (652)
Q Consensus 192 ~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~ 230 (652)
+|+|||++.++.+. ++.+.- .. .-.||.-.+.+.
T Consensus 117 ~DIGGGStEl~~~~--~~~~~~--~~-Sl~lG~vrl~e~ 150 (285)
T pfam02541 117 IDIGGGSTELVLGE--NKKVRK--LI-SLPMGCVRLTER 150 (285)
T ss_pred EEECCCCEEEEEEE--CCEEEE--EE-EECCCCHHHHHH
T ss_conf 98279827999987--890778--77-724788999998
No 76
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=93.82 E-value=0.31 Score=28.02 Aligned_cols=30 Identities=33% Similarity=0.825 Sum_probs=25.0
Q ss_pred CCCCEEEEEEECCCEEEEEEEEEC-CCEEEE
Q ss_conf 565507998724411454310102-314654
Q gi|255764494|r 184 KDARTVIVFDFGGGTFDVSLLEMG-DGVFEV 213 (652)
Q Consensus 184 ~~~~~vlV~D~Gggt~dvsi~~~~-~~~~~v 213 (652)
++.+.+|++|+||..+-+++|.+. .|.++.
T Consensus 72 ~e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~ 102 (466)
T COG5026 72 NESGSVLAIDLGGTNLRVCLVVLGGDGTFDI 102 (466)
T ss_pred CCCCCEEEEECCCCEEEEEEEEECCCCCCCC
T ss_conf 8778789996289558999999689997210
No 77
>KOG0681 consensus
Probab=93.38 E-value=0.3 Score=28.12 Aligned_cols=53 Identities=11% Similarity=0.163 Sum_probs=32.6
Q ss_pred CCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 550799872441145431010231465420133224552134476655367876420134
Q gi|255764494|r 186 ARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGI 245 (652)
Q Consensus 186 ~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~ 245 (652)
.+.-+|+++|..++.|-. +-+|.. ++....-.++||...- +|+...+..||-.
T Consensus 167 ~~~~liis~g~~~T~vip--vldG~~-il~~~kRiN~GG~qa~----dYL~~Lmq~Kyp~ 219 (645)
T KOG0681 167 NKSGLIISMGHSATHVIP--VLDGRL-ILKDVKRINWGGYQAG----DYLSRLMQLKYPF 219 (645)
T ss_pred CCCEEEEECCCCCCEEEE--EECCCH-HHHCCEEECCCCCHHH----HHHHHHHHCCCCC
T ss_conf 765489963777650588--755712-5311534033761188----9999999601766
No 78
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.96 E-value=0.11 Score=31.38 Aligned_cols=41 Identities=34% Similarity=0.502 Sum_probs=25.7
Q ss_pred CCCCCCCCHHHHHHHHHCC--CCCCCEEEEEEECCCEEEEEEEE
Q ss_conf 2222221024788886034--45655079987244114543101
Q gi|255764494|r 164 DVLRIINEPTAAALAYGLD--KKDARTVIVFDFGGGTFDVSLLE 205 (652)
Q Consensus 164 ~v~~li~EptAAal~Y~~~--~~~~~~vlV~D~Gggt~dvsi~~ 205 (652)
.+..+.+-|.|-.++...- .... ++++|||||.|+|+|++.
T Consensus 254 pv~tI~SGPAagvvGAa~ltg~~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 254 PVETILSGPAAGVVGAAYLTGLKAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred CEEEEEECCHHHHHHHHHHCCCCCC-CEEEEECCCCCEEEEEEE
T ss_conf 8415840537988899985200369-799997577610135663
No 79
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase; InterPro: IPR006003 The enzymes for catabolism of the pentitols D-arabinitol and ribitol include NAD-dependent pentose dehydrogenase (dalD and rbtD), ATP-dependent pentulose kinases (dalK and rbtK) and a pentose-specific ion symporter (dalT and rbtT). Of the two kinases (19.3 0dentity), DalK (487 aa) belongs to the family of short D-xylulokinases and RbtK (D-ribulokinase; 535 aa) to the family of long kinases . .
Probab=92.58 E-value=0.079 Score=32.56 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=50.0
Q ss_pred CCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 1111010135631101466307853056778865410111111135653101111100022346
Q gi|255764494|r 315 CKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQ 378 (652)
Q Consensus 315 i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls 378 (652)
|-+++...|.. -+..|++.||.++-|.+.+.+.+.++.++...-+-.|+|..|||+.+|.=+
T Consensus 457 I~ea~~~~Gr~--~~k~i~~sGg~~qnpl~~q~~Ad~C~~Pvlipr~~~e~Vl~GaA~LGA~A~ 518 (574)
T TIGR01315 457 IVEALTAAGRA--VIKSILISGGLAQNPLLVQLLADICDLPVLIPRDVQEAVLLGAAILGAAAS 518 (574)
T ss_pred HHHHHHHCCCE--EEEEEEECCCCCCCHHHHHHHHHHCCCCEECCHHHCHHHHHHHHHHHHHHC
T ss_conf 99998626860--220113417644525788889634178732441102057776888887631
No 80
>TIGR00395 leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases.; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=92.25 E-value=0.078 Score=32.58 Aligned_cols=88 Identities=23% Similarity=0.417 Sum_probs=49.8
Q ss_pred CCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHH---HHHHCCCHHH------HHHHHHCCCCCCC
Q ss_conf 486606999998995599756898625627999948998996678986---3330835110------0206754986872
Q gi|255764494|r 9 LGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKR---QAVTNPSNTI------FAAKRLIGRRFND 79 (652)
Q Consensus 9 lGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~---~~~~~p~~ti------~~~KrliG~~~~d 79 (652)
||.||+= +.+..--++..-.+...|-+-+-.-++|-.++-..|.. ++.+.|++-+ .+-+.|||+....
T Consensus 305 yG~Tn~w---v~P~~~Yv~~~~~~e~etenGielienGiwi~~~~A~~~L~yq~~~PkrGf~~~~~~v~g~~liG~~v~~ 381 (1109)
T TIGR00395 305 YGVTNVW---VNPDITYVIAEVGGEKETENGIELIENGIWIVSKEAVENLSYQKLKPKRGFLKVIEEVDGKQLIGKKVKN 381 (1109)
T ss_pred HCCEEEE---ECCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECHHHHCCCEEEC
T ss_conf 0755355---5577516899733740012004455422577789999604343458874227886530734241764457
Q ss_pred H-HHHHHHHCCCEEEEECCCC
Q ss_conf 6-7876520198699975998
Q gi|255764494|r 80 S-TVAKDASLVPFKIVEGKGG 99 (652)
Q Consensus 80 ~-~~~~~~~~~~~~~~~~~~~ 99 (652)
| .+.+..+.+|.++|....+
T Consensus 382 Pq~v~~e~pILPa~fV~~~~g 402 (1109)
T TIGR00395 382 PQVVGKEVPILPAEFVDTEKG 402 (1109)
T ss_pred CCCCCCCCCCCCCCCCCCCCC
T ss_conf 732589775477011267888
No 81
>pfam03702 UPF0075 Uncharacterized protein family (UPF0075). The proteins is this family are about 370 amino acids long and have no known function.
Probab=92.09 E-value=0.35 Score=27.66 Aligned_cols=61 Identities=25% Similarity=0.379 Sum_probs=38.4
Q ss_pred HHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC-CCC----CCCCCCCHHHHHHHHCCC
Q ss_conf 1001111010135631101466307853056778865410111-111----135653101111100022
Q gi|255764494|r 312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK-SPS----KGVNPDEVVAMGAAIQAG 375 (652)
Q Consensus 312 ~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~-~~~----~~~npdeaVa~GAA~~a~ 375 (652)
...|-+.+.... ...+.|++.||+.+-|.+-+.|++.|+. .+. ..+++|--=|..-|+.|.
T Consensus 270 a~sIa~~i~~~~---~~~~~iiv~GGG~~N~~L~~~l~~~l~~~~v~~~d~~g~~~~~~EA~~FA~La~ 335 (363)
T pfam03702 270 AVTIVDALLQAG---PDCERLLVCGGGARNPLLMARLAELLPNVDVASTDELGLDPDYMEAMAFAWLAY 335 (363)
T ss_pred HHHHHHHHHHCC---CCCCEEEEECCCCCCHHHHHHHHHHCCCCEEECHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999999999628---997589997887568899999997779998842888399822899999999999
No 82
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=91.97 E-value=0.25 Score=28.79 Aligned_cols=49 Identities=24% Similarity=0.395 Sum_probs=34.5
Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCC-CCC----CCCCCCCHHHHHHHHCCC
Q ss_conf 1101466307853056778865410111-111----135653101111100022
Q gi|255764494|r 327 SDIDEVVLVGGMTRMPKIQQSVQDFFNK-SPS----KGVNPDEVVAMGAAIQAG 375 (652)
Q Consensus 327 ~~I~~V~lvGGssriP~v~~~i~~~fg~-~~~----~~~npdeaVa~GAA~~a~ 375 (652)
...+.|++.||+.+-|.+-+.|++.|.. .+. ..+++|--=|.+-|+.|.
T Consensus 285 ~~~~~i~v~GGG~~N~~L~~~l~~~l~~~~v~~~d~~gi~~d~~EA~~FA~La~ 338 (366)
T PRK09585 285 PGPRELLVCGGGARNPTLMERLAALLPGARVATTDALGIDPDAVEALAFAWLAV 338 (366)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCCEEECHHHHCCCHHHHHHHHHHHHHH
T ss_conf 996689997887557999999997689987844898099904999999999999
No 83
>pfam02685 Glucokinase Glucokinase. This is a family of glucokinases or glucose kinases EC:2.7.1.2. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP.
Probab=91.63 E-value=1 Score=24.05 Aligned_cols=195 Identities=18% Similarity=0.230 Sum_probs=92.0
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHCCC--------------CCCCEEEEEEECCCEEEEEEEEECCCEEEEECCC-CCCCCC
Q ss_conf 2112222222210247888860344--------------5655079987244114543101023146542013-322455
Q gi|255764494|r 159 RIAGLDVLRIINEPTAAALAYGLDK--------------KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATN-GDTFLG 223 (652)
Q Consensus 159 ~~AGl~v~~li~EptAAal~Y~~~~--------------~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~-gd~~lG 223 (652)
+.-|++.+.|||+=+|.| |++.. ......+|+--|-| +-++.+-..++...+++++ |+..+.
T Consensus 88 ~~~g~~~v~liNDf~A~a--~~l~~l~~~~~~~i~~g~~~~~~~~~viGpGTG-LG~a~l~~~~~~~~v~~sEgGH~~fa 164 (316)
T pfam02685 88 AALGLDAVHLINDFEAQA--YAIPRLGADDLVQLGGGKPDPGAPIAVLGPGTG-LGVAGLIPTGGGWIVLPGEGGHVDFA 164 (316)
T ss_pred HHHCCCEEEEECCHHHHH--CCCCCCCHHHCEEECCCCCCCCCCEEEEECCCC-CCEEEEEECCCCEEECCCCCCCCCCC
T ss_conf 972998599972777887--045459987806607998999996799967887-52477898699538555766455679
Q ss_pred -CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCC--
Q ss_conf -21344766553678764201343024478999999999988541155650358630443467887212687311000--
Q gi|255764494|r 224 -GEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF-- 300 (652)
Q Consensus 224 -G~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~f-- 300 (652)
-.+....|.+|+.+++..-.-.++. +-+.+.+|++..-.... +... .+ . ...|++.-.
T Consensus 165 p~~~~e~~l~~~L~~~~g~vs~E~vl-SG~GL~~ly~~l~~~~~-~~~~--------~~-----~----~~~I~~~A~~~ 225 (316)
T pfam02685 165 PRSEREAELLQYLRRRFGHVSAERVL-SGPGLVNLYRALCALDG-LTPE--------LL-----L----PADITAAALAG 225 (316)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEE-CCHHHHHHHHHHHHHCC-CCCC--------CC-----C----HHHHHHHHHHC
T ss_conf 99979999999999864976040022-54539999999985248-9877--------79-----9----99999999809
Q ss_pred -CCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCC--HHHHHH-HHHHCC-CCC---------CCCCCCCCCHH
Q ss_conf -0123420000110011110101356311014663078530--567788-654101-111---------11135653101
Q gi|255764494|r 301 -ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTR--MPKIQQ-SVQDFF-NKS---------PSKGVNPDEVV 366 (652)
Q Consensus 301 -e~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssr--iP~v~~-~i~~~f-g~~---------~~~~~npdeaV 366 (652)
+.+|...++.+....-.++.+.-++.---..|.|.||-++ +|.+++ ...+.| .+. |..-+.-+.+-
T Consensus 226 ~d~~a~~~~~~F~~~lG~~~gdlaL~~~a~GGvylaGGi~~~l~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~~g 305 (316)
T pfam02685 226 DDPLAREALELFCAILGSVAGNLALTLGARGGVYIAGGIAPRILEFLKASGFRARFEDKGRFSALLRDIPVYVITHPQPG 305 (316)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHCCCEEEECCCCHH
T ss_conf 99789999999999999999999997379955999660577778561768999998616617899854957999389741
Q ss_pred HHHHHHCCC
Q ss_conf 111100022
Q gi|255764494|r 367 AMGAAIQAG 375 (652)
Q Consensus 367 a~GAA~~a~ 375 (652)
-+|||.+|.
T Consensus 306 L~GAa~~a~ 314 (316)
T pfam02685 306 LLGAAAAAR 314 (316)
T ss_pred HHHHHHHHH
T ss_conf 888999996
No 84
>PRK00047 glpK glycerol kinase; Provisional
Probab=89.79 E-value=0.36 Score=27.58 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=17.6
Q ss_pred EEEEECCCCEEEEEEEECCE
Q ss_conf 69980486606999998995
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKN 23 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~ 23 (652)
++|||+|||.+++++++..+
T Consensus 7 vlgiD~GTts~Ka~l~d~~G 26 (498)
T PRK00047 7 ILALDQGTTSSRAIIFDHKG 26 (498)
T ss_pred EEEEECCCCEEEEEEECCCC
T ss_conf 99997463303566996999
No 85
>pfam00370 FGGY_N FGGY family of carbohydrate kinases, N-terminal domain. This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain.
Probab=89.60 E-value=0.26 Score=28.58 Aligned_cols=20 Identities=35% Similarity=0.637 Sum_probs=17.0
Q ss_pred EEEEECCCCEEEEEEEECCE
Q ss_conf 69980486606999998995
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKN 23 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~ 23 (652)
++|||+|||+.++++++..+
T Consensus 2 ~lgIDiGTt~iKa~l~d~~g 21 (245)
T pfam00370 2 VLGIDCGTTSTKAIVFNKQG 21 (245)
T ss_pred EEEEEHHHCCEEEEEECCCC
T ss_conf 99998030021000785999
No 86
>TIGR02627 rhamnulo_kin rhamnulokinase; InterPro: IPR013449 Rhamnulokinase (2.7.1.5 from EC) is an enzyme that catalyzes the second step in rhamnose catabolism.; GO: 0008993 rhamnulokinase activity, 0019301 rhamnose catabolic process.
Probab=88.10 E-value=0.3 Score=28.12 Aligned_cols=309 Identities=20% Similarity=0.211 Sum_probs=140.5
Q ss_pred EEE-EEECCCCCCCCCEEEEEECCCCEEECHHHHHH--HHH-----------CCCHHHHHHHHHCCCCCCCHHHHHHHH-
Q ss_conf 559-97568986256279999489989966789863--330-----------835110020675498687267876520-
Q gi|255764494|r 23 NVR-VIENAEGTRTTPSMVGFTDEGERLVGQPAKRQ--AVT-----------NPSNTIFAAKRLIGRRFNDSTVAKDAS- 87 (652)
Q Consensus 23 ~~~-ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~--~~~-----------~p~~ti~~~KrliG~~~~d~~~~~~~~- 87 (652)
+|+ |+++.+|.|..+. |||.+ .|.-|.-+.-+ +.+ -|=||+|.+|=+-- ..|+.-....
T Consensus 77 GVDyVLLD~~G~r~g~p-~sYRD--~RT~G~m~~~~~~lg~e~iY~~TGIQFl~fNTLYQL~Al~~---~~P~ll~~~~~ 150 (460)
T TIGR02627 77 GVDYVLLDKNGERVGDP-VSYRD--SRTDGVMAEVQSELGKEAIYRKTGIQFLPFNTLYQLKALTE---QNPDLLEKVEH 150 (460)
T ss_pred CCCEEEECCCCCEECCC-CCCCC--CHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHCC---CCCHHHHHHHH
T ss_conf 10256716998563472-01466--10445999999730655566631853021016899998514---88325899987
Q ss_pred ------CCCEEEEECCCCEEEEEECCEEE---CHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEEECCCCCCCHHHHHHHH
Q ss_conf ------19869997599827999579587---199999999999999999983884733-69853778874025788634
Q gi|255764494|r 88 ------LVPFKIVEGKGGDAWIEAQGKQY---SPSQISAIVLQKMKETAESFLGETVSK-AVITVPAYFNDAQRQATKDA 157 (652)
Q Consensus 88 ------~~~~~~~~~~~~~~~~~~~~~~~---~peei~a~iL~~lk~~ae~~l~~~v~~-~VitVP~~f~~~qR~a~~~A 157 (652)
++.|.++-..+ .+| |..|++-.--+.-=..--.|+|-+... .-++-|.+.=-.-|......
T Consensus 151 ~LlIPDYl~Y~LTG~~v---------~EYTNAsTTQLlN~~~~~WD~~LL~~lG~~~~~F~~~~~PG~~iG~~~~~~~~~ 221 (460)
T TIGR02627 151 LLLIPDYLNYRLTGKLV---------AEYTNASTTQLLNLETKDWDKDLLDYLGVPAEWFADITHPGNVIGELKEDLWEE 221 (460)
T ss_pred HHCCCCCCCEEECCCEE---------CEECCCHHHHHHHCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHHC
T ss_conf 51164110301327410---------000274356654143443118999870888668478887421104625677731
Q ss_pred HHHCCCCCCCCCCCHHHHH-HHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEE--EECCCC-CCCCCCHHHHH----
Q ss_conf 4211222222221024788-886034456550799872441145431010231465--420133-22455213447----
Q gi|255764494|r 158 GRIAGLDVLRIINEPTAAA-LAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFE--VKATNG-DTFLGGEDFDS---- 229 (652)
Q Consensus 158 a~~AGl~v~~li~EptAAa-l~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~--vl~~~g-d~~lGG~d~D~---- 229 (652)
...-.++|+..=.-=||.| ++ -+. .+.+-++ +-.|| .|++-++...-- -.|-.. -++=||-|=..
T Consensus 222 ~~~~~~pV~~VAtHDTASAVva--~P~-~~~~~aY--LSSGT--WSLmG~E~~tP~~~~~Al~~NiTNEGGa~g~YRvLK 294 (460)
T TIGR02627 222 LDGDQVPVVAVATHDTASAVVA--APL-QDENAAY--LSSGT--WSLMGLESSTPITNEQALAANITNEGGADGRYRVLK 294 (460)
T ss_pred CCCCCCCEEEECCCCCCCCEEE--CCC-CCCCEEE--ECCCH--HHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEH
T ss_conf 5797223363066762202032--576-7687578--71551--334300578896777899608876265465212301
Q ss_pred HHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCC-
Q ss_conf 665-536787642013430244789999999999885411556503586304434678872126873110000123420-
Q gi|255764494|r 230 CLV-EHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHL- 307 (652)
Q Consensus 230 ~l~-~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l- 307 (652)
.|+ =|+..+..+... +...+..| ++.|+..++...-..++=+.+ ++-.=--++....|++-
T Consensus 295 NIMGLWl~qrv~~~~~-----~~~dl~~l---~~~A~~~p~f~~iInpnD~RF---------~nP~~M~~eI~~yCREt~ 357 (460)
T TIGR02627 295 NIMGLWLLQRVCRERD-----DIKDLAAL---IEQAKAEPAFKSIINPNDDRF---------INPENMVEEIQAYCRETN 357 (460)
T ss_pred HHHHHHHHHHHHHHHC-----CHHHHHHH---HHHHHCCCCCEEEECCCHHHC---------CCCHHHHHHHHHHHHHCC
T ss_conf 0445899999853301-----35469999---999713898113006773114---------796547999999754237
Q ss_pred --HHHHHHCCC------------CC-CHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf --000110011------------11-010135631101466307853056778865410111111135653101111100
Q gi|255764494|r 308 --IQKTVEPCK------------KC-LQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAI 372 (652)
Q Consensus 308 --~~~~~~~i~------------~~-L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~ 372 (652)
+.++..-+- ++ .+-+.+.-.+|..+-+|||+|+.-++-+++.+..|+++... |-||-++|=-.
T Consensus 358 Q~vP~s~aeLArCiFdSLAl~Y~~~~~~l~~l~g~~i~~LhIVGGGs~n~~LNQL~AD~cGi~V~AG--PvEAs~lGN~~ 435 (460)
T TIGR02627 358 QPVPESDAELARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADLCGIEVIAG--PVEASTLGNIG 435 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEC--CHHHHHHHHHH
T ss_conf 8899965568887888899999999999873026885514686175144466778888728814415--33678877899
No 87
>KOG1385 consensus
Probab=87.40 E-value=2.1 Score=21.77 Aligned_cols=30 Identities=33% Similarity=0.510 Sum_probs=21.0
Q ss_pred CCCCCCCEEEEEEECCCEEEEEEEEECCCE
Q ss_conf 344565507998724411454310102314
Q gi|255764494|r 181 LDKKDARTVIVFDFGGGTFDVSLLEMGDGV 210 (652)
Q Consensus 181 ~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~ 210 (652)
+......++.|+|+|||+++++..--....
T Consensus 207 L~~~~~~tvgv~DLGGGSTQi~f~p~~e~~ 236 (453)
T KOG1385 207 LGAPGHRTVGVVDLGGGSTQITFLPTFEDT 236 (453)
T ss_pred CCCCCCCCEEEEECCCCEEEEEEECCCCCC
T ss_conf 589987735899727964788970476444
No 88
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=85.99 E-value=0.98 Score=24.26 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=19.2
Q ss_pred CCCEEEEECCCCEEEEEEEECCE
Q ss_conf 98169980486606999998995
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDGKN 23 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~~~ 23 (652)
|+.++|||||+..+-+|+.+...
T Consensus 3 ~griLgiD~G~kriGlAisD~~~ 25 (141)
T PRK00109 3 SGRILGFDVGTKRIGVAIGDPLG 25 (141)
T ss_pred CCCEEEEEECCCEEEEEEECCCC
T ss_conf 88889998189979999946999
No 89
>TIGR02628 fuculo_kin_coli L-fuculokinase; InterPro: IPR013450 Proteins in this entry are L-fuculokinases from the clade that includes the Escherichia coli enzyme P11553 from SWISSPROT. They catalyze the second step in fucose catabolism and belong to the FGGY family of carbohydrate kinases. These enzymes are encoded by the kinase (K) gene of the fucose (fuc) operon.; GO: 0008737 L-fuculokinase activity, 0005975 carbohydrate metabolic process.
Probab=85.82 E-value=0.54 Score=26.22 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC---CCEEEEEECCCCCCCCCCCEEEE---EECCCCCC
Q ss_conf 4766553678764201343024478999999999988541155---65035863044346788721268---73110000
Q gi|255764494|r 228 DSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSS---TSQTEINLPFISANSAGAQHLNM---KLTRAQFE 301 (652)
Q Consensus 228 D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~---~~~~~i~i~~~~~~~~~g~d~~~---~itR~~fe 301 (652)
--..++|+.+.|=... ..+..-+.-|-++++++--.=+. .+.-+.++.++......|.-+.. .|-|+-||
T Consensus 306 ~SgV~EWv~klfftae----~~S~~~y~~mIeEar~~~nga~gvvfkPNf~~~~~~~gqg~i~Gl~l~ttRG~iyraale 381 (473)
T TIGR02628 306 ASGVVEWVAKLFFTAE----TASDELYKVMIEEARKVANGADGVVFKPNFETDLDSLGQGAIEGLSLFTTRGEIYRAALE 381 (473)
T ss_pred HHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHCCCCCCCCEEEECCHHHHHHHHHH
T ss_conf 8889999987753100----341579999999998733556702457762204333065430110220335789999999
Q ss_pred CCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 12342000011001111010135631101466307853056778865410111111135653101111100022346752
Q gi|255764494|r 302 RLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDV 381 (652)
Q Consensus 302 ~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~ 381 (652)
-|...|-.+ ++.++++ +.++. ..+++|||+||--+=-++=.+.+..++ +-++--|+-+.|||+.+-.=+|..
T Consensus 382 gl~~qLk~~-l~~L~~~---~qf~a---~~l~~VGGGskN~LWNQirAn~L~~p~-~vvd~aE~TV~GAAmF~f~GvG~y 453 (473)
T TIGR02628 382 GLAKQLKRR-LDVLEQV---SQFKA---KELVVVGGGSKNVLWNQIRANALDLPV-KVVDDAEATVLGAAMFAFAGVGIY 453 (473)
T ss_pred HHHHHHHHH-HHHHHHH---HHCCC---CCEEEECCCCCCHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999998742-3578776---31137---756896178521146786676650870-001200257899999762246443
Q ss_pred C
Q ss_conf 2
Q gi|255764494|r 382 K 382 (652)
Q Consensus 382 ~ 382 (652)
.
T Consensus 454 ~ 454 (473)
T TIGR02628 454 E 454 (473)
T ss_pred C
T ss_conf 8
No 90
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=84.08 E-value=3 Score=20.63 Aligned_cols=180 Identities=21% Similarity=0.241 Sum_probs=83.1
Q ss_pred HHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEE-CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH--H
Q ss_conf 788886034456550799872441145431010-2314654201332245521344766553678764201343024--4
Q gi|255764494|r 174 AAALAYGLDKKDARTVIVFDFGGGTFDVSLLEM-GDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQ--D 250 (652)
Q Consensus 174 AAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~-~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~--~ 250 (652)
+-|+.-.+......+.+|.++|| |+-+.. ..+. .|++ +|+.-|-.-+|..+-.|..+.|.+.-..--+. +
T Consensus 150 vPA~H~Al~~~~~~~r~vlNiGG----IaNlt~l~~~~-~v~g--~DtGPgN~llD~wi~~~~g~~yD~~g~~A~~G~v~ 222 (371)
T COG2377 150 VPAFHAALARAPRERRAVLNIGG----IANLTYLPPGG-PVLG--FDTGPGNMLLDAWIQAHGGKPYDKDGAWAASGKVD 222 (371)
T ss_pred HHHHHHHHHCCCCCCEEEEECCC----EEEEEECCCCC-CEEE--EECCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCC
T ss_conf 01332676548998769995265----57777617998-3465--30688604899999983288767674522158968
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCC---CCCCCHHHHHHC--CCCCCHHCCCC
Q ss_conf 7899999999998854115565035863044346788721268731100001---234200001100--11110101356
Q gi|255764494|r 251 TLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFER---LVNHLIQKTVEP--CKKCLQDAGLS 325 (652)
Q Consensus 251 ~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~---l~~~l~~~~~~~--i~~~L~~a~~~ 325 (652)
..-+.+|+ .+.-++... ....+-.+|...--...++. +...-+.+++.. ...+.+....-
T Consensus 223 ~~ll~~ll-----~~p~F~~~~----------PkStgRe~F~~~wl~~~~~~~~~l~a~Dv~aTL~eltA~tIv~s~~~~ 287 (371)
T COG2377 223 EALLARLL-----AHPYFALPA----------PKSTGRELFNLQWLEQHLDDTQLLNAEDVQATLVELTAATIVKSVATL 287 (371)
T ss_pred HHHHHHHH-----HCCCCCCCC----------CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 79999985-----287656889----------555784310115689887432688989999999997799999998644
Q ss_pred CEEEEEEEECCCCCCHHHHHHHHHHCC-CCCCC----CCCCCCCHHHHHHHHCCC
Q ss_conf 311014663078530567788654101-11111----135653101111100022
Q gi|255764494|r 326 PSDIDEVVLVGGMTRMPKIQQSVQDFF-NKSPS----KGVNPDEVVAMGAAIQAG 375 (652)
Q Consensus 326 ~~~I~~V~lvGGssriP~v~~~i~~~f-g~~~~----~~~npdeaVa~GAA~~a~ 375 (652)
..+-+..+++||+.+-|.+.+.+...+ |-++. ..+++|..=|.+=|+.|.
T Consensus 288 ~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~ 342 (371)
T COG2377 288 QGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAW 342 (371)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 5788624762487557899999997568986631120487810346789999999
No 91
>KOG0681 consensus
Probab=83.82 E-value=0.58 Score=26.01 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=17.4
Q ss_pred EEEEECCCCEEEEEEEECCEEEE
Q ss_conf 69980486606999998995599
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNVRV 26 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~~i 26 (652)
.|-||.|+..|.+++.....|.+
T Consensus 25 piVIDNGS~~~RaGw~ge~eP~l 47 (645)
T KOG0681 25 PIVIDNGSYECRAGWAGEKEPRL 47 (645)
T ss_pred CEEEECCCEEEEECCCCCCCCCC
T ss_conf 47994786357502269999540
No 92
>PRK00877 hisD histidinol dehydrogenase; Reviewed
Probab=81.74 E-value=3.3 Score=20.32 Aligned_cols=49 Identities=31% Similarity=0.429 Sum_probs=37.7
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHCC
Q ss_conf 47336985377887402578863442112222222210247-88886034
Q gi|255764494|r 134 TVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA-AALAYGLD 182 (652)
Q Consensus 134 ~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA-Aal~Y~~~ 182 (652)
-|.+.|+..|+.-+..=-.+++-||.++|.+.+--+--.-| ||++||..
T Consensus 151 GV~~Iv~~tPp~~~g~i~p~il~aa~~~Gv~~iy~~GGaqAIAAlAyGTe 200 (428)
T PRK00877 151 GVKEIVMVTPPQKDGPINPAILAAAQLAGVDEVYKVGGAQAIAALAYGTE 200 (428)
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCC
T ss_conf 99817998688988963989999998519235012387999999980778
No 93
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=81.34 E-value=3.7 Score=19.89 Aligned_cols=69 Identities=25% Similarity=0.309 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEE
Q ss_conf 99999999983884733698537788740257886344211222222221024788886034456550799872441145
Q gi|255764494|r 121 QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFD 200 (652)
Q Consensus 121 ~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~d 200 (652)
.++++..++.++.++ .|+++-..|... .|..+--.+|--|-. |.| --+-...+...+++|+|..|+|
T Consensus 77 e~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~vAAaNW~-------Ata--~~~~e~~~dsci~VD~GSTTtD 143 (330)
T COG1548 77 EDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPREVAAANWV-------ATA--RFLAEEIKDSCILVDMGSTTTD 143 (330)
T ss_pred HHHHHHHHHHCCCCE--EEEECCCCCCCH--HHHCCHHHHHHHHHH-------HHH--HHHHHHCCCCEEEEECCCCCCC
T ss_conf 999999987428956--999156867676--675388877776469-------999--9999864785699964786332
Q ss_pred EE
Q ss_conf 43
Q gi|255764494|r 201 VS 202 (652)
Q Consensus 201 vs 202 (652)
+-
T Consensus 144 II 145 (330)
T COG1548 144 II 145 (330)
T ss_pred EE
T ss_conf 47
No 94
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=81.25 E-value=0.8 Score=24.95 Aligned_cols=66 Identities=26% Similarity=0.335 Sum_probs=48.3
Q ss_pred HHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 0110011110101356311014663078530567788654101111111356531011111000223467
Q gi|255764494|r 310 KTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG 379 (652)
Q Consensus 310 ~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~ 379 (652)
++.+.++.-=++++. .+..+-.=||.|+..++-+...++.|.++.+..+ .|+-|+|||+.|++-.+
T Consensus 387 Q~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~lAGla~G 452 (499)
T COG0554 387 QTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYLAGLAVG 452 (499)
T ss_pred HHHHHHHHHHHHCCC---CCEEEEECCCCCCCHHHHHHHHHHHCCEEECCCC-CHHHHHHHHHHHHHHHC
T ss_conf 999999999876278---8606997576100457899988872880361465-10368999999765627
No 95
>pfam00349 Hexokinase_1 Hexokinase. Hexokinase (EC:2.7.1.1) contains two structurally similar domains represented by this family and pfam03727. Some members of the family have two copies of each of these domains.
Probab=80.63 E-value=1.6 Score=22.73 Aligned_cols=31 Identities=26% Similarity=0.568 Sum_probs=23.8
Q ss_pred CCCCEEEEEEECCCEEEEEEEEECC-CEEEEE
Q ss_conf 5655079987244114543101023-146542
Q gi|255764494|r 184 KDARTVIVFDFGGGTFDVSLLEMGD-GVFEVK 214 (652)
Q Consensus 184 ~~~~~vlV~D~Gggt~dvsi~~~~~-~~~~vl 214 (652)
.+.+.++.+|+||..|-|..+++.+ +.+++.
T Consensus 59 ~E~G~~lAlDlGGTN~RV~~V~L~g~~~~~~~ 90 (205)
T pfam00349 59 TEKGDFLALDLGGTNFRVLLVKLTGNGKVEMT 90 (205)
T ss_pred CCCCEEEEEEECCCEEEEEEEEECCCCCEEEE
T ss_conf 75523999960685489999997699848999
No 96
>TIGR01311 glycerol_kin glycerol kinase; InterPro: IPR005999 Glycerol kinase (2.7.1.30 from EC) is a bacterial sugar kinase which catalyzes the Mg-ATP-dependent phosphorylation of glycerol to yield glycerol 3-phosphate. The enzyme from Escherichia coli is an allosteric regulatory enzyme whose activity is inhibited by fructose 1,6-bisphosphate (FBP) and the glucose-specific phosphocarrier of the phosphoenolpyruvate:glycose phosphotransferase system, IIA(Glc), structural studies suggest a nucleophilic in-line transfer mechanism for the ATP-dependent phosphorylation of glycerol by glycerol kinase .; GO: 0004370 glycerol kinase activity, 0006072 glycerol-3-phosphate metabolic process.
Probab=80.61 E-value=0.78 Score=25.02 Aligned_cols=189 Identities=20% Similarity=0.277 Sum_probs=104.9
Q ss_pred HHCCCCCCCCCCCHHHHHHHHH-CCCC------CCCEEEEEEECCCEEEEEEEEECCCEEE------------EECCCCC
Q ss_conf 2112222222210247888860-3445------6550799872441145431010231465------------4201332
Q gi|255764494|r 159 RIAGLDVLRIINEPTAAALAYG-LDKK------DARTVIVFDFGGGTFDVSLLEMGDGVFE------------VKATNGD 219 (652)
Q Consensus 159 ~~AGl~v~~li~EptAAal~Y~-~~~~------~~~~vlV~D~Gggt~dvsi~~~~~~~~~------------vl~~~gd 219 (652)
-.+++++..++=+=-||-++-. +... ..+.+|++..|- .++.=..|-+. +-|-+|-
T Consensus 246 ~g~~iPI~G~lGDQQAAL~GQ~C~~~G~aKnTYGTGcFlL~NTG~-----~~~~S~hgLLTTvay~lgg~~p~~YALEGS 320 (518)
T TIGR01311 246 LGAEIPITGVLGDQQAALFGQACFKPGEAKNTYGTGCFLLMNTGE-----KPVISKHGLLTTVAYQLGGKKPTVYALEGS 320 (518)
T ss_pred CCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC-----EEEEECCCCEEEEEEEECCCCCCEEEECCH
T ss_conf 078972575000378999998622102332456310110221487-----621435887157778747988722650124
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC-------CCCCCCEEE
Q ss_conf 2455213447665536787642013430244789999999999885411556503586304434-------678872126
Q gi|255764494|r 220 TFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISA-------NSAGAQHLN 292 (652)
Q Consensus 220 ~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~-------~~~~g~d~~ 292 (652)
-.++| +.++||.+.++- -.++.. +|.+=+....+.-+ ..||-+.= ....|.-+=
T Consensus 321 vfvAG-----AavqWLRD~l~l------i~~a~e-------~E~LA~~V~~~~GV-YFVPAFtGLgAPYWD~~ARG~I~G 381 (518)
T TIGR01311 321 VFVAG-----AAVQWLRDNLKL------IKHAAE-------SEALARSVEDNGGV-YFVPAFTGLGAPYWDPDARGAIFG 381 (518)
T ss_pred HHHHH-----HHHHHHHHHCCC------CCCHHH-------HHHHHHHCCCCCCE-EEEECCCCCCCCCCCCCCCEEEEE
T ss_conf 88888-----899998752363------579889-------99999726899966-886355568787768222759772
Q ss_pred -------EEECCCCCCCCCCCCHHHHHHCCCCCCHHCC----CCCEEEEEEEECCCCCCHHHHHHHHHHCCC-CCCCCCC
Q ss_conf -------8731100001234200001100111101013----563110146630785305677886541011-1111135
Q gi|255764494|r 293 -------MKLTRAQFERLVNHLIQKTVEPCKKCLQDAG----LSPSDIDEVVLVGGMTRMPKIQQSVQDFFN-KSPSKGV 360 (652)
Q Consensus 293 -------~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~----~~~~~I~~V~lvGGssriP~v~~~i~~~fg-~~~~~~~ 360 (652)
..|-|+-+|.+| -.+.++|+.-=+|+| ..... .=.=||.|+--++-+...++.| .++.+..
T Consensus 382 lTr~T~~~Hi~RA~LEaia----fQ~RDv~~AM~~D~gg~~~~~~~~---LrVDGG~~~NnlLMQ~QADilGC~~V~RP~ 454 (518)
T TIGR01311 382 LTRGTTKAHIARAALEAIA----FQTRDVLEAMEKDAGGEEIVELKK---LRVDGGMTNNNLLMQFQADILGCVPVVRPK 454 (518)
T ss_pred CCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHCCCCCCCCCCC---EEECCHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 4656567787898999999----989999999875168851035330---001411230167899887675771200067
Q ss_pred CCCCHHHHHHHHCCCCCCC
Q ss_conf 6531011111000223467
Q gi|255764494|r 361 NPDEVVAMGAAIQAGVLQG 379 (652)
Q Consensus 361 npdeaVa~GAA~~a~~ls~ 379 (652)
. .|+-|+|||+.|++=.|
T Consensus 455 ~-~EtTALGAA~~AGla~G 472 (518)
T TIGR01311 455 V-TETTALGAAYAAGLAVG 472 (518)
T ss_pred C-CCCCHHHHHHHHHHHCC
T ss_conf 4-56218999999875401
No 97
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=80.39 E-value=2.2 Score=21.55 Aligned_cols=48 Identities=29% Similarity=0.421 Sum_probs=37.0
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHCC
Q ss_conf 47336985377887402578863442112222222210247-88886034
Q gi|255764494|r 134 TVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA-AALAYGLD 182 (652)
Q Consensus 134 ~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA-Aal~Y~~~ 182 (652)
-|.++|+..|+. +..--.+++-||.++|.+.+--+--.-| ||++||-.
T Consensus 145 GV~~Ivv~tPp~-~g~i~p~iL~aA~l~Gv~~vy~iGGAqAIAAlAyGTe 193 (424)
T PRK12447 145 GVPRIVACTPPF-PGEPHPAIVAAMHLAGADEIYCLGGVQAVAAMAYGTE 193 (424)
T ss_pred CCCEEEEECCCC-CCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCC
T ss_conf 998589965999-9999989999999809878985587999999980678
No 98
>pfam00815 Histidinol_dh Histidinol dehydrogenase.
Probab=80.23 E-value=2.5 Score=21.24 Aligned_cols=49 Identities=29% Similarity=0.341 Sum_probs=37.7
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHCC
Q ss_conf 47336985377887402578863442112222222210247-88886034
Q gi|255764494|r 134 TVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA-AALAYGLD 182 (652)
Q Consensus 134 ~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA-Aal~Y~~~ 182 (652)
-|.++|+..|+.=+..--.+++-||.++|.+-+--+--.-| ||++||..
T Consensus 137 GV~~Ivv~tPP~~~G~i~p~iLaaA~l~Gv~~vy~iGGAQAIAAlAyGTe 186 (413)
T pfam00815 137 GCKKIVLCSPPPKDGKVNPEILYAAHIAGVDEIYKAGGAQAIAAMAYGTE 186 (413)
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCC
T ss_conf 99858998178878961989999999809888974588999999972778
No 99
>pfam03652 UPF0081 Uncharacterized protein family (UPF0081).
Probab=80.08 E-value=2.2 Score=21.61 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=17.0
Q ss_pred CEEEEECCCCEEEEEEEECC
Q ss_conf 16998048660699999899
Q gi|255764494|r 3 KVIGIDLGTTNSCVAIMDGK 22 (652)
Q Consensus 3 ~viGIDlGtt~s~va~~~~~ 22 (652)
.++|||||+.++-+|+.+..
T Consensus 2 riLgiD~G~kriGvAisd~~ 21 (134)
T pfam03652 2 RILGLDVGTKRIGVAISDPL 21 (134)
T ss_pred CEEEEECCCCEEEEEEECCC
T ss_conf 79999808997999993599
No 100
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=79.65 E-value=1.9 Score=22.08 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=18.3
Q ss_pred CCCEEEEECCCCEEEEEEEECC
Q ss_conf 9816998048660699999899
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDGK 22 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~~ 22 (652)
|. +||||+|-|+.++++++..
T Consensus 1 M~-~lgiDiGGT~ik~~lvd~~ 21 (291)
T PRK05082 1 MT-TLAIDIGGTKIAAALVGED 21 (291)
T ss_pred CC-EEEEEECCCEEEEEEECCC
T ss_conf 96-9999957340999999599
No 101
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=79.64 E-value=3.9 Score=19.73 Aligned_cols=116 Identities=23% Similarity=0.446 Sum_probs=76.5
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 14654201332245521344766553678764201---343024478999999999988541155650358630443467
Q gi|255764494|r 209 GVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKEN---GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANS 285 (652)
Q Consensus 209 ~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~---~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~ 285 (652)
|+=.|+=|+|.+-|= .||+..|.. + +++ .+.+++|-- .|..-|+++|.+ .-..+.|++++
T Consensus 62 GV~kvKlTGGEPlLR-~D~~~Ii~~-~-----~~~~~~~vSmTTNG~---LL~~~A~~Lk~A--GLdRVNVSLdt----- 124 (324)
T TIGR02668 62 GVRKVKLTGGEPLLR-KDLIEIIRR-I-----KDYGIKDVSMTTNGI---LLEKLAKKLKEA--GLDRVNVSLDT----- 124 (324)
T ss_pred CCCEEEECCCCCCHH-HHHHHHHHH-H-----CCCCCEEEECCCCHH---HHHHHHHHHHHH--CCCEEEECCCC-----
T ss_conf 883277517874345-669999986-1-----467503442030314---489899999982--85613120267-----
Q ss_pred CCCCEEEEEECCCCCCCCC---CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCC-CCC-HHHHHHHHHHC
Q ss_conf 8872126873110000123---420000110011110101356311014663078-530-56778865410
Q gi|255764494|r 286 AGAQHLNMKLTRAQFERLV---NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGG-MTR-MPKIQQSVQDF 351 (652)
Q Consensus 286 ~~g~d~~~~itR~~fe~l~---~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGG-ssr-iP~v~~~i~~~ 351 (652)
+.++.|..+. ...++++++-|++|++ +||+|=-|+-|+|=|= ... +|-+-+...+|
T Consensus 125 ---------ld~e~Y~kITG~~~~~~~~Vi~GI~~A~~-~GL~PVKlN~Vvl~G~N~~~~~~~m~~f~~~~ 185 (324)
T TIGR02668 125 ---------LDPEKYKKITGQSRDALDRVIEGIESAVD-AGLTPVKLNMVVLKGINDNEEIPDMVEFAADY 185 (324)
T ss_pred ---------CCHHHHHHHCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf ---------88678886448998607899999999997-28981378888754778850079999999875
No 102
>KOG0677 consensus
Probab=79.06 E-value=3.5 Score=20.03 Aligned_cols=194 Identities=18% Similarity=0.219 Sum_probs=94.5
Q ss_pred CEEEEEECCCCCCCHHHHHHHH-HHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEE
Q ss_conf 3369853778874025788634-421122222222102478888603445655079987244114543101023146542
Q gi|255764494|r 136 SKAVITVPAYFNDAQRQATKDA-GRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVK 214 (652)
Q Consensus 136 ~~~VitVP~~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl 214 (652)
.+..+|-|+---...|+-+.+. .+.-||.-+-+- -.|...-|+ +.--+-+|+|-|.|-+.++-+ -.|. ++
T Consensus 102 ~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyva--iQAVLtLYA---QGL~tGvVvDSGDGVTHi~PV--ye~~--~l 172 (389)
T KOG0677 102 CKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVA--IQAVLTLYA---QGLLTGVVVDSGDGVTHIVPV--YEGF--VL 172 (389)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEH--HHHHHHHHH---HCCCCEEEEECCCCEEEEEEE--ECCE--EH
T ss_conf 74882079989640389999999987188717753--999999997---001011799559980688530--1121--03
Q ss_pred C-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC-----------CCEEEEEECCCC
Q ss_conf 0-1332245521344766553678764201343024478999999999988541155-----------650358630443
Q gi|255764494|r 215 A-TNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSS-----------TSQTEINLPFIS 282 (652)
Q Consensus 215 ~-~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~-----------~~~~~i~i~~~~ 282 (652)
. -....++.|+|++.-|++.+.. +-|..+-+.|-. .....|+.|.- .-++++-+++..
T Consensus 173 ~HLtrRldvAGRdiTryLi~LLl~---rGYafN~tADFE-------TVR~iKEKLCYisYd~e~e~kLalETTvLv~~Yt 242 (389)
T KOG0677 173 PHLTRRLDVAGRDITRYLIKLLLR---RGYAFNHTADFE-------TVREIKEKLCYISYDLELEQKLALETTVLVESYT 242 (389)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHH---HCCCCCCCCCHH-------HHHHHHHHHEEEEECHHHHHHHHHHHEEEEEEEE
T ss_conf 555433012310689999999986---342335543258-------9999876450475024366676345301245444
Q ss_pred CCCCCCCEEEEEECCCCCC---CCCCCCHHHH-----HHCCCCCCHHCCCC--CEEEEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 4678872126873110000---1234200001-----10011110101356--311014663078530567788654101
Q gi|255764494|r 283 ANSAGAQHLNMKLTRAQFE---RLVNHLIQKT-----VEPCKKCLQDAGLS--PSDIDEVVLVGGMTRMPKIQQSVQDFF 352 (652)
Q Consensus 283 ~~~~~g~d~~~~itR~~fe---~l~~~l~~~~-----~~~i~~~L~~a~~~--~~~I~~V~lvGGssriP~v~~~i~~~f 352 (652)
..+|.- +.+--+.|| .+.+|-+-.. .+++=.+++.+.++ .+--..|+|-||||--|.+-..+++.+
T Consensus 243 --LPDGRv--IkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkEl 318 (389)
T KOG0677 243 --LPDGRV--IKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKEL 318 (389)
T ss_pred --CCCCCE--EEECCEECCCCHHHCCCCEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHEEECCCCCCCCCCCHHHHHHH
T ss_conf --699838--9745531358255358644424787689999877777333228888867564388524899737899999
No 103
>KOG0797 consensus
Probab=79.03 E-value=0.45 Score=26.81 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=11.5
Q ss_pred CEEEEEEECCCEEEEE
Q ss_conf 5079987244114543
Q gi|255764494|r 187 RTVIVFDFGGGTFDVS 202 (652)
Q Consensus 187 ~~vlV~D~Gggt~dvs 202 (652)
...+.+-|-+|.|.|+
T Consensus 178 ~y~l~~Pir~G~fNv~ 193 (618)
T KOG0797 178 PYCLYHPIRRGHFNVS 193 (618)
T ss_pred CCEEECCCCCCEECCC
T ss_conf 6336504346520368
No 104
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=78.67 E-value=2 Score=21.89 Aligned_cols=48 Identities=31% Similarity=0.439 Sum_probs=36.7
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHCC
Q ss_conf 47336985377887402578863442112222222210247-88886034
Q gi|255764494|r 134 TVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA-AALAYGLD 182 (652)
Q Consensus 134 ~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA-Aal~Y~~~ 182 (652)
-|.++|++.|+.=+. --.+++-||+++|.+-+-.+--.-| |||+||-.
T Consensus 146 Gv~~Iv~~tPp~~~g-v~p~iL~AA~~~Gv~eIy~vGGAQAIAAlAYGTe 194 (425)
T COG0141 146 GVEEIVVVTPPPKDG-VNPEILAAARLAGVDEVYKVGGAQAIAALAYGTE 194 (425)
T ss_pred CCCEEEEECCCCCCC-CCHHHHHHHHHHCCHHHHHCCCHHHHHHHHCCCC
T ss_conf 886489977999889-8989999999948089887258999999973677
No 105
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=78.52 E-value=4.5 Score=19.26 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 13447665536787642
Q gi|255764494|r 225 EDFDSCLVEHICDTFKK 241 (652)
Q Consensus 225 ~d~D~~l~~~~~~~~~~ 241 (652)
.-+|.+|++||++-|..
T Consensus 227 ~~Vek~lfdY~~~~Y~~ 243 (622)
T COG5185 227 LMVEKLLFDYFTESYKS 243 (622)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 106
>PRK13770 histidinol dehydrogenase; Provisional
Probab=78.19 E-value=3 Score=20.63 Aligned_cols=48 Identities=25% Similarity=0.311 Sum_probs=37.0
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHCC
Q ss_conf 47336985377887402578863442112222222210247-88886034
Q gi|255764494|r 134 TVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA-AALAYGLD 182 (652)
Q Consensus 134 ~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA-Aal~Y~~~ 182 (652)
-|.++|+..|+.-+. --.+++-||+++|.+-+--+--.-| ||++||..
T Consensus 140 GV~~Ivv~tPp~~~g-i~~~~Laaa~l~Gv~~vy~vGGAQAIAAlAyGTe 188 (416)
T PRK13770 140 GVENIVVVTPPQPNG-VSQEVLAACYITQVNQVFQVGGAQSIAALTYGTE 188 (416)
T ss_pred CCCCEEEEECCCCCC-CCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCC
T ss_conf 998138973889899-8989999999839968985588999999980787
No 107
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=77.84 E-value=4.7 Score=19.12 Aligned_cols=49 Identities=31% Similarity=0.443 Sum_probs=38.1
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHCC
Q ss_conf 47336985377887402578863442112222222210247-88886034
Q gi|255764494|r 134 TVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA-AALAYGLD 182 (652)
Q Consensus 134 ~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA-Aal~Y~~~ 182 (652)
-|.++|+..|+.=+..---+++-||+++|.+-+-.+--.-| ||++||..
T Consensus 122 GV~~Ivv~tPP~~~G~i~p~vL~aA~l~Gv~eiy~iGGaQAIAAlAyGTe 171 (390)
T cd06572 122 GVKEIVVVTPPRKDGKINPAILAAAKLAGVDEIYKVGGAQAIAALAYGTE 171 (390)
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCC
T ss_conf 89848998688868981999999999839260430488999999972887
No 108
>KOG1369 consensus
Probab=77.57 E-value=4.8 Score=19.06 Aligned_cols=27 Identities=30% Similarity=0.678 Sum_probs=23.0
Q ss_pred CCCCEEEEEEECCCEEEEEEEEECCCE
Q ss_conf 565507998724411454310102314
Q gi|255764494|r 184 KDARTVIVFDFGGGTFDVSLLEMGDGV 210 (652)
Q Consensus 184 ~~~~~vlV~D~Gggt~dvsi~~~~~~~ 210 (652)
++.+.++.+|+||..|-|..+.+.++.
T Consensus 83 ~E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369 83 TEKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred CCCCCEEEEECCCCCEEEEEEEECCCC
T ss_conf 857877999618983699999966996
No 109
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit; InterPro: IPR004486 This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.; GO: 0006730 one-carbon compound metabolic process.
Probab=77.55 E-value=1.7 Score=22.44 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=70.9
Q ss_pred EEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHH-------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 998724411454310102314654201332245521344-------7665536787642013430244789999999999
Q gi|255764494|r 190 IVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFD-------SCLVEHICDTFKKENGIDLKQDTLALQRLKEAAE 262 (652)
Q Consensus 190 lV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D-------~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e 262 (652)
-++-+||-. ..++.+|+..+-..=..+. |-|| +.++.|| .|+.+||-.+ |.
T Consensus 93 k~V~lGG~r-slAlYrFeePQPnpPvvtf------DvFDiP~PgLpkpiR~hf---------~DVmedP~eW------Ar 150 (401)
T TIGR00381 93 KTVKLGGQR-SLALYRFEEPQPNPPVVTF------DVFDIPMPGLPKPIREHF---------EDVMEDPAEW------AR 150 (401)
T ss_pred CEEEECCEE-EEEEECCCCCCCCCCEEEE------EECCCCCCCCCHHHHHHH---------HHHHCCHHHH------HH
T ss_conf 358866703-3200205783434687787------513687578766777765---------6630283358------88
Q ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCC--
Q ss_conf 885411556503586304434678872126873110000123420000110011110101356311014663078530--
Q gi|255764494|r 263 KAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTR-- 340 (652)
Q Consensus 263 ~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssr-- 340 (652)
||=+..-++- .+|++=|-... +-..--....+.++.+|+-..+. ++||||-.
T Consensus 151 KcVK~fGAdm-vTiHlIsTdPk------------------~~Dksp~EAaK~~EdvLQAVdvP-------~viGGSGnpe 204 (401)
T TIGR00381 151 KCVKEFGADM-VTIHLISTDPK------------------VKDKSPKEAAKVLEDVLQAVDVP-------LVIGGSGNPE 204 (401)
T ss_pred HHHHHHCCCE-EEEEEECCCCC------------------CCCCCHHHHHHHHHHHHHHCCCC-------EEECCCCCCC
T ss_conf 8887627663-88644337885------------------46887224788999876340677-------5774788886
Q ss_pred -HHHHHHHHHHCC-CCCC---CCCCCCCC-HHHHHHHHCCC
Q ss_conf -567788654101-1111---11356531-01111100022
Q gi|255764494|r 341 -MPKIQQSVQDFF-NKSP---SKGVNPDE-VVAMGAAIQAG 375 (652)
Q Consensus 341 -iP~v~~~i~~~f-g~~~---~~~~npde-aVa~GAA~~a~ 375 (652)
=|.|-|.-.+.- |..+ +-+++-|. =||.-|-=|.+
T Consensus 205 KDPlVLEkaAEvAEGeR~lLASAnLdlDy~kia~AA~ky~H 245 (401)
T TIGR00381 205 KDPLVLEKAAEVAEGERCLLASANLDLDYKKIANAALKYDH 245 (401)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 67578998843113621645413513457899999853498
No 110
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=75.90 E-value=3 Score=20.63 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=17.4
Q ss_pred CEEEEECCCCEEEEEEEECCE
Q ss_conf 169980486606999998995
Q gi|255764494|r 3 KVIGIDLGTTNSCVAIMDGKN 23 (652)
Q Consensus 3 ~viGIDlGtt~s~va~~~~~~ 23 (652)
.++|||||+..+-+|+.+..+
T Consensus 2 rvLgiD~G~kriG~Ai~D~~~ 22 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETG 22 (99)
T ss_pred CEEEEEECCCCEEEEEEECCC
T ss_conf 799992178969999998999
No 111
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=74.41 E-value=4.4 Score=19.35 Aligned_cols=73 Identities=30% Similarity=0.533 Sum_probs=44.5
Q ss_pred HHHHHHHHHHH------HHCCC---------CCEEEEEECCCCC---CCHH-------HHHHH----HHHHCCCCCC--C
Q ss_conf 99999999999------83884---------7336985377887---4025-------78863----4421122222--2
Q gi|255764494|r 119 VLQKMKETAES------FLGET---------VSKAVITVPAYFN---DAQR-------QATKD----AGRIAGLDVL--R 167 (652)
Q Consensus 119 iL~~lk~~ae~------~l~~~---------v~~~VitVP~~f~---~~qR-------~a~~~----Aa~~AGl~v~--~ 167 (652)
.|.+|+.+|.+ ++|.- |..-+|.-|.||| +.|- ||+.+ -|.+-||++. .
T Consensus 62 ~l~~l~~ia~kN~~~~sfiG~GyY~~~~P~vI~rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANAS 141 (450)
T COG0403 62 ALAELKEIASKNKVFTSFIGAGYYDTYTPPVILRNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANAS 141 (450)
T ss_pred HHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 99999999870661454256864687182788887643854223678886366657999999899999998588744500
Q ss_pred CCCCHHHHH----HHHHCCCCCCCEEEE
Q ss_conf 221024788----886034456550799
Q gi|255764494|r 168 IINEPTAAA----LAYGLDKKDARTVIV 191 (652)
Q Consensus 168 li~EptAAa----l~Y~~~~~~~~~vlV 191 (652)
+++|.||+| ++|.+.+.....++|
T Consensus 142 m~DeaTAaAEAm~ma~r~~k~k~~~~~V 169 (450)
T COG0403 142 MLDEATAAAEAMLMAKRVTKKKRNKFLV 169 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 2316769999999998741476734996
No 112
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=73.96 E-value=3.4 Score=20.16 Aligned_cols=52 Identities=25% Similarity=0.254 Sum_probs=40.9
Q ss_pred CCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCCC
Q ss_conf 34200001100111101013563110146630785305--67788654101111
Q gi|255764494|r 304 VNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNKS 355 (652)
Q Consensus 304 ~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~~ 355 (652)
..|--+.....++++|+++++.+++|+.|..-|-+|.. |.=-+.|.+.||..
T Consensus 201 t~P~~~~~~~~~~~al~~ag~~~~~i~yI~aHgtgT~~gD~~E~~ai~~~fg~~ 254 (336)
T PRK09116 201 TQPQAETMQIAMELALKDAGLAPEDIGYVNAHGTATDRGDIAESQATAAVFGAR 254 (336)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 897999999999999997098802122899537778888999999999985767
No 113
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=73.50 E-value=1.4 Score=23.05 Aligned_cols=50 Identities=28% Similarity=0.171 Sum_probs=37.3
Q ss_pred CCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCC
Q ss_conf 34200001100111101013563110146630785305--677886541011
Q gi|255764494|r 304 VNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFN 353 (652)
Q Consensus 304 ~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg 353 (652)
..|-.+.....++++|++++++++|||.|+.-|.++|+ +.=.+.+.+.|+
T Consensus 140 ~~p~~~~~~~~i~~al~~agl~~~dId~v~~H~tgt~i~D~iE~~a~~~~~~ 191 (254)
T cd00327 140 PAVSGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPDG 191 (254)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCCCCHHHHHHHCCCCCC
T ss_conf 2788789999999999983998645257997888783545999986534006
No 114
>TIGR00069 hisD histidinol dehydrogenase; InterPro: IPR001692 Histidinol dehydrogenase (1.1.1.23 from EC) (HDH) catalyses the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His . The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules . By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme . A Cys residue has been implicated in the catalytic mechanism of the second oxidative step . In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast .; GO: 0004399 histidinol dehydrogenase activity, 0000105 histidine biosynthetic process.
Probab=73.39 E-value=2.6 Score=21.09 Aligned_cols=48 Identities=27% Similarity=0.372 Sum_probs=37.1
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHCC
Q ss_conf 7336985377887402578863442112222222210247-88886034
Q gi|255764494|r 135 VSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA-AALAYGLD 182 (652)
Q Consensus 135 v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA-Aal~Y~~~ 182 (652)
|+++|++-|+.=+-.=--.++=||.++|+.-+--+=---| ||||||-.
T Consensus 148 vekIV~ctPP~KDG~v~p~~LvaA~~~Gv~~iY~~GGAQAiAA~AYGTE 196 (435)
T TIGR00069 148 VEKIVLCTPPDKDGKVSPEVLVAADLAGVSEIYKVGGAQAIAAMAYGTE 196 (435)
T ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 6789986586998887826777766832688875016999999861776
No 115
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex.
Probab=72.23 E-value=2.4 Score=21.31 Aligned_cols=97 Identities=29% Similarity=0.414 Sum_probs=60.0
Q ss_pred ECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCE-EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 311000012342000011001111010135631-1014663078530567788654101111111356531011111000
Q gi|255764494|r 295 LTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPS-DIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQ 373 (652)
Q Consensus 295 itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~-~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~ 373 (652)
|--.+|+..+.+ +..+...++++..|.+.+ +| .++.|=|+--+|++-+.|-+.= +++.+.+ |=.|++||-+.
T Consensus 5 ~v~ARFN~~It~---~L~~gA~d~~~~~G~~~~~~i-~~~~VPGafElP~~~~kL~~~~-~klGkP~--DAVi~LG~VIr 77 (148)
T TIGR00114 5 IVIARFNRFITD---KLLEGAIDALKRLGAEVDENI-DVIRVPGAFELPLAVKKLAESG-KKLGKPY--DAVIALGAVIR 77 (148)
T ss_pred EEEEHHHHHHHH---HHHHHHHHHHHHCCCCCCCCE-EEEECCCCCCHHHHHHHHHHHH-HHCCCCC--CEEEECCEEEE
T ss_conf 877122068999---899999999996689527863-5897068311268999998500-2017963--35885114773
Q ss_pred CCCCCCC---------CCCHHEECCCCCCCCCCC
Q ss_conf 2234675---------221000023566532223
Q gi|255764494|r 374 AGVLQGD---------VKDLLLLDVTPLSLGIET 398 (652)
Q Consensus 374 a~~ls~~---------~~~~~~~dv~p~slgie~ 398 (652)
++.-+-+ +-++.+.--.|-.+||-|
T Consensus 78 G~T~HfeyV~~~A~~gia~~a~~~~~PV~fGilT 111 (148)
T TIGR00114 78 GGTPHFEYVADEAAKGIADLALDYDVPVIFGILT 111 (148)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 7966557777789999999998659877603328
No 116
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR014276 This entry represents the mainly actinobacterial clade of the E2 component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (IPR001078 from INTERPRO), one or two biotin domains (IPR000089 from INTERPRO) and an E3-component binding domain (IPR004167 from INTERPRO)..
Probab=72.14 E-value=6.1 Score=18.27 Aligned_cols=67 Identities=22% Similarity=0.392 Sum_probs=44.5
Q ss_pred CCCCCCHHEECCCCCCCCCCCCCCEEEEEEC--CCCCCC--HHHHHHH-HHHHHHCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 6752210000235665322233420246633--898110--2456654-5676412221100001222222222334531
Q gi|255764494|r 378 QGDVKDLLLLDVTPLSLGIETLGGVFTSIID--RNSTIP--TKKSQVF-STAADNQSAVSIRIGQGERKMFADNKLLGQF 452 (652)
Q Consensus 378 s~~~~~~~~~dv~p~slgie~~~~~~~~ii~--~~~~iP--~~k~~~f-~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~ 452 (652)
+.+.|++.++|+..++|-+.|..|..+++|. ..-.|| .++...+ -+..||.- -.|.-.=|+|
T Consensus 451 N~etKe~TYhd~eh~giAVDTp~GLL~PVi~NAgDLslpglAkaI~DlAaRaR~nkl-------------kPdeLsGgTF 517 (607)
T TIGR02927 451 NEETKEVTYHDAEHLGIAVDTPRGLLVPVIHNAGDLSLPGLAKAIADLAARARDNKL-------------KPDELSGGTF 517 (607)
T ss_pred CCCCCEEEEEEEEEEEEEEECCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCC-------------CCCCCCCCCE
T ss_conf 468750313431020146547888634623125657736799999889987534787-------------8540258732
Q ss_pred CCCCC
Q ss_conf 02456
Q gi|255764494|r 453 DLVGI 457 (652)
Q Consensus 453 ~i~~i 457 (652)
+|+||
T Consensus 518 TITNi 522 (607)
T TIGR02927 518 TITNI 522 (607)
T ss_pred EEECC
T ss_conf 56400
No 117
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=71.97 E-value=3.8 Score=19.84 Aligned_cols=56 Identities=23% Similarity=0.410 Sum_probs=41.2
Q ss_pred HHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCCCC-CCCCCCC
Q ss_conf 0001100111101013563110146630785305--677886541011111-1135653
Q gi|255764494|r 308 IQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNKSP-SKGVNPD 363 (652)
Q Consensus 308 ~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~~~-~~~~npd 363 (652)
-......++++|++++++++||+.|..-|=+|.. +.=...|++.||..+ ..++.+.
T Consensus 251 g~~~~~am~~al~~agi~~~~Idyi~aHgtgT~~~D~~E~~ai~~vfg~~~~v~s~Ks~ 309 (379)
T PRK05952 251 GKSAILAIQQCLARSGLTPEDIDYIHAHGTATRLNDQREANLIQTLFPHRVAVSSTKGA 309 (379)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 89999999999998499833352899467878776999999999971877887787433
No 118
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=71.89 E-value=3.8 Score=19.79 Aligned_cols=52 Identities=25% Similarity=0.217 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf 234200001100111101013563110146630785305--6778865410111
Q gi|255764494|r 303 LVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK 354 (652)
Q Consensus 303 l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~ 354 (652)
...|--+.....++++|+++++++++|+.|..-|.++.. +.=.+.|.+.|+.
T Consensus 199 ~~~p~~~~~~~ai~~Al~~agi~p~~I~yI~ahgtGt~~~D~~E~~Al~~~fg~ 252 (332)
T cd00825 199 AFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKELKLLRSEFGD 252 (332)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
T ss_conf 879799999999999999849882001479917786855559999999998578
No 119
>PRK13329 pantothenate kinase; Reviewed
Probab=71.85 E-value=6.2 Score=18.22 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.2
Q ss_pred CCCEEEEECCCCEEEEEEEECCEE
Q ss_conf 981699804866069999989955
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDGKNV 24 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~~~~ 24 (652)
|. ++-||.|||+.+.+++++++.
T Consensus 1 Mm-~L~iDIGNT~ik~~~~~~~~~ 23 (246)
T PRK13329 1 MT-FLAIDVGNTRLKWGLYDAAGA 23 (246)
T ss_pred CC-EEEEEECCCEEEEEEEECCCC
T ss_conf 97-999997788059999988997
No 120
>PRK09698 D-allose kinase; Provisional
Probab=70.03 E-value=4.2 Score=19.46 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=17.0
Q ss_pred EEEEECCCCEEEEEEEECCE
Q ss_conf 69980486606999998995
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKN 23 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~ 23 (652)
|||||+|-|+..+++++..+
T Consensus 6 viGIDiGGT~i~~~l~d~~g 25 (302)
T PRK09698 6 VAGIDMGATHIRFCLVDAEG 25 (302)
T ss_pred EEEEEECCCEEEEEEECCCC
T ss_conf 99999873249999996999
No 121
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=69.63 E-value=3.9 Score=19.68 Aligned_cols=50 Identities=20% Similarity=0.186 Sum_probs=39.3
Q ss_pred CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf 4200001100111101013563110146630785305--6778865410111
Q gi|255764494|r 305 NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK 354 (652)
Q Consensus 305 ~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~ 354 (652)
.|--......++++|++|++.+++|+.|..-|-+|+. +.=-+.|++.||.
T Consensus 285 ~p~~~~~~~~~~~al~~Ag~~~~~i~~i~aHgtgT~~~D~~E~~ai~~~fg~ 336 (425)
T PRK06501 285 SPDGSPAIGCVRAALADAGLTEDQIDYINAHGTSTPENDKMEYLGLSAVFGE 336 (425)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
T ss_conf 9886999999999999829882451379805876867679999999998635
No 122
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=69.33 E-value=3.5 Score=20.08 Aligned_cols=19 Identities=26% Similarity=0.693 Sum_probs=16.4
Q ss_pred CEEEEECCCCEEEEEEEEC
Q ss_conf 1699804866069999989
Q gi|255764494|r 3 KVIGIDLGTTNSCVAIMDG 21 (652)
Q Consensus 3 ~viGIDlGtt~s~va~~~~ 21 (652)
.|+|||-|++++-+|+++.
T Consensus 1 RILGIDPGl~~~G~aiie~ 19 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQ 19 (154)
T ss_pred CEEEECCCCCCCEEEEEEE
T ss_conf 9699875668715999995
No 123
>COG4499 Predicted membrane protein [Function unknown]
Probab=69.06 E-value=7.4 Score=17.62 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHCCCC
Q ss_conf 056778865410111
Q gi|255764494|r 340 RMPKIQQSVQDFFNK 354 (652)
Q Consensus 340 riP~v~~~i~~~fg~ 354 (652)
.+|+.+-.+.++||.
T Consensus 211 ~VpK~k~~ifk~~gi 225 (434)
T COG4499 211 FVPKKKYTIFKYFGI 225 (434)
T ss_pred ECCCCCCEEHHHHHH
T ss_conf 603555111146888
No 124
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=68.64 E-value=5.5 Score=18.58 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=17.9
Q ss_pred CCEEEEECCCCEEEEEEEECCE
Q ss_conf 8169980486606999998995
Q gi|255764494|r 2 SKVIGIDLGTTNSCVAIMDGKN 23 (652)
Q Consensus 2 s~viGIDlGtt~s~va~~~~~~ 23 (652)
-.++|+||||..+-||+.+...
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred CEEEEEECCCCEEEEEEECCCC
T ss_conf 6499996278748899764777
No 125
>PRK00865 glutamate racemase; Provisional
Probab=68.07 E-value=3.2 Score=20.33 Aligned_cols=41 Identities=27% Similarity=0.455 Sum_probs=32.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 10146630785305677886541011111113565310111110
Q gi|255764494|r 328 DIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAA 371 (652)
Q Consensus 328 ~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA 371 (652)
++|.++| |+|.-|.+++.|++++|..+ +-+||-++||+-..
T Consensus 174 ~iDtlIL--GCTHYP~l~~~i~~~~~~~v-~iIDpa~~vA~~v~ 214 (262)
T PRK00865 174 GIDTLVL--GCTHYPLLKPEIQQVLGEGV-TLIDSGEAIARRVA 214 (262)
T ss_pred CCCEEEE--CCCCHHHHHHHHHHHCCCCC-EEECCHHHHHHHHH
T ss_conf 9988997--67670778999999759998-99728899999999
No 126
>PRK00061 ribH riboflavin synthase subunit beta; Provisional
Probab=67.98 E-value=2.7 Score=20.98 Aligned_cols=78 Identities=27% Similarity=0.432 Sum_probs=52.9
Q ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 88721268731100001234200001100111101013563110146630785305677886541011111113565310
Q gi|255764494|r 286 AGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEV 365 (652)
Q Consensus 286 ~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdea 365 (652)
.++..+++-|=.+.|++-+ .++..+-..+.|...|...++|+ ++-|-|+--+|..-+.+.+ +-++|-.
T Consensus 8 ~~~~~~rI~IV~s~~n~~I---t~~L~~ga~~~L~~~g~~~~~i~-~~~VPGa~EiP~a~~~l~~--------~~~~Dav 75 (154)
T PRK00061 8 LDAKGLRIGIVVARFNDFI---TDALLEGAIDALKRHGVSEENID-VVRVPGAFEIPLAAKKLAE--------SGKYDAV 75 (154)
T ss_pred CCCCCCEEEEEEECCCHHH---HHHHHHHHHHHHHHCCCCHHHEE-EEECCCHHHHHHHHHHHHH--------CCCCCEE
T ss_conf 2688989999980385899---99999999999998599931269-9987968889999999986--------3998879
Q ss_pred HHHHHHHCCC
Q ss_conf 1111100022
Q gi|255764494|r 366 VAMGAAIQAG 375 (652)
Q Consensus 366 Va~GAA~~a~ 375 (652)
||.||-+.+.
T Consensus 76 IalG~VIkGe 85 (154)
T PRK00061 76 IALGAVIRGE 85 (154)
T ss_pred EEEEEEEECC
T ss_conf 9999998189
No 127
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=67.90 E-value=3.7 Score=19.86 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=40.0
Q ss_pred CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf 4200001100111101013563110146630785305--6778865410111
Q gi|255764494|r 305 NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK 354 (652)
Q Consensus 305 ~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~ 354 (652)
.|--+.....++++|+++++++++|+.|..-|=+|.. |.=-+.|++.||.
T Consensus 282 ~p~g~~~~~am~~Al~~agl~p~~IdyI~aHGTgT~~gD~~E~~Ai~~vfg~ 333 (418)
T PRK07910 282 DPNGERAGHAMTRAIQLAGLTPTDIDHVNAHATGTSVGDVAEGRAINNALGG 333 (418)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
T ss_conf 9980789999999999828995340779956777876699999999998669
No 128
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated
Probab=67.82 E-value=4.6 Score=19.21 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=45.7
Q ss_pred CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCCCC-CCCCCCCCHHHHHH
Q ss_conf 4200001100111101013563110146630785305--677886541011111-11356531011111
Q gi|255764494|r 305 NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNKSP-SKGVNPDEVVAMGA 370 (652)
Q Consensus 305 ~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~~~-~~~~npdeaVa~GA 370 (652)
.|-.+.....++++|+++++++++|+.|..-|=+|+. +.=-+.|++.||..+ ..++.+..--..||
T Consensus 281 ~p~~~g~~~am~~Al~~Agl~~~~IdyI~aHgTgT~~~D~~E~~Al~~~fg~~~~v~S~Ks~~GH~lgA 349 (415)
T PRK07103 281 APSLDGEMAVIRGALRRAGLGPADIDYVNPHGTGSVLGDATELDALRASGLAHARINTTKSLVGHGLSA 349 (415)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCEECCCHHHHHCHHH
T ss_conf 997799999999999982978123077981487676769999999999708998675864432035799
No 129
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=67.14 E-value=4.7 Score=19.12 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=28.2
Q ss_pred HHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 0001100111101013563110146630785305677886541011
Q gi|255764494|r 308 IQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN 353 (652)
Q Consensus 308 ~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg 353 (652)
+..+.+.++++|++++++++|||.+++-=.+-|| ++...++++|
T Consensus 270 v~~~~~~i~~~L~~~gl~~~DId~~v~HQAN~ri--i~~i~k~llg 313 (372)
T PRK07515 270 CPMVAEHIVEHLAENGLTPADVKRLWLHQANINM--NQLIGKKVLG 313 (372)
T ss_pred HHHHHHHHHHHHHHHCCCHHHCCEEEECCCCHHH--HHHHHHHHCC
T ss_conf 9999999999999829898889999867789999--9999998545
No 130
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=67.03 E-value=8.1 Score=17.34 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=34.4
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--ECCC--CCCCHHHHHHHHH---HHCCCCCCCCCCCH
Q ss_conf 5871999999999999999999838847336985--3778--8740257886344---21122222222102
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVIT--VPAY--FNDAQRQATKDAG---RIAGLDVLRIINEP 172 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~Vit--VP~~--f~~~qR~a~~~Aa---~~AGl~v~~li~Ep 172 (652)
+.++|++|.+..++.+.+....--...|+++++. .|+. .-...|++.+.|. ...++.+-|..-..
T Consensus 22 ~~~~~~~L~a~~i~~~l~r~~~i~~~~Id~Vi~G~~~~~g~~g~n~aR~~aL~aGlp~~vpa~TVnr~C~SG 93 (400)
T PRK13359 22 SSVRADDLGAVPLKALVERNRDVDWAAIDDVIYGCANQAGEDNRNVARMSLLLAGLPHGVPGTTINRLCGSG 93 (400)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCHHHHH
T ss_conf 999889999999999997269979899997999827755654576899999976999887626761321149
No 131
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.02 E-value=8.1 Score=17.33 Aligned_cols=57 Identities=25% Similarity=0.409 Sum_probs=29.3
Q ss_pred EECCCCCCCHHHHHHHHHH---HCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEE
Q ss_conf 5377887402578863442---112222222210247888860344565507998724411454310
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGR---IAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLL 204 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~---~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~ 204 (652)
-+|.+|+- ++.|+. -++-.. -+++.--||+..-.++.... ..+|+|+|-|++...++
T Consensus 185 eiPe~FtR-----Mraaa~sal~~~t~a-v~mDskfaav~gal~dpaa~-palvVd~GngHttaalv 244 (342)
T COG4012 185 EIPESFTR-----MRAAAMSALSAGTDA-VAMDSKFAAVMGALVDPAAD-PALVVDYGNGHTTAALV 244 (342)
T ss_pred CCCHHHHH-----HHHHHHHHHHCCCEE-EEECCHHHHHHHCCCCCCCC-CEEEEECCCCCEEEEEE
T ss_conf 68566789-----999999887447248-99715037665400474558-35999806872578885
No 132
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=66.90 E-value=8.1 Score=17.32 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=39.8
Q ss_pred EECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 9579587199999999999999999983884733698537788740257886344211222222221024788
Q gi|255764494|r 104 EAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 104 ~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.++++.++.+++.+. |+.... +.+-..++|..-..-...+--.+.++|+.||+.-+.|+.|++|.|
T Consensus 75 ~~~~~~v~~~~L~~~----l~~~~~---~~~~~~v~i~aD~~~~y~~vv~Vmd~~~~aG~~kv~lvte~~~~~ 140 (141)
T PRK11267 75 FIGNDPVTDETMITA----LDALTE---GKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEETAKA 140 (141)
T ss_pred EECCCCCCHHHHHHH----HHHHHH---CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 877803579999999----999983---289962999758998688999999999986998699984686567
No 133
>PRK13326 pantothenate kinase; Reviewed
Probab=66.77 E-value=8.1 Score=17.32 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCEEEEEEEECCEEE
Q ss_conf 9816998048660699999899559
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDGKNVR 25 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~~~~~ 25 (652)
||.-+-||.|+||.+.++++++...
T Consensus 5 ~~m~L~IDIGNT~ik~g~~~~~~l~ 29 (262)
T PRK13326 5 LSSQLIIDIGNTSISFALYKDNKMQ 29 (262)
T ss_pred CCCEEEEEECCCCEEEEEEECCEEE
T ss_conf 3665899987871599999899999
No 134
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=66.58 E-value=8.2 Score=17.27 Aligned_cols=48 Identities=29% Similarity=0.376 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 9999999999983884733698537788740257886344211222222221024
Q gi|255764494|r 119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPT 173 (652)
Q Consensus 119 iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~Ept 173 (652)
++..+++..+.. ..+-.||.||+.| ...|+++|. -||+..+-+|.|..
T Consensus 53 Vf~tV~EA~~~~---~a~~svI~Vp~~~---aadai~EAi-da~i~liv~ITEgI 100 (293)
T COG0074 53 VFNTVEEAVKET---GANASVIFVPPPF---AADAILEAI-DAGIKLVVIITEGI 100 (293)
T ss_pred HHHHHHHHHHHH---CCCEEEEECCCHH---HHHHHHHHH-HCCCCEEEEEECCC
T ss_conf 789999998702---8977999648177---899999998-57995799995999
No 135
>TIGR01382 PfpI intracellular protease, PfpI family; InterPro: IPR006286 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad . This group of cysteine peptidases belong to MEROPS peptidase family C56 (Pfp1 endopeptidase, clan PC(C)). The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallises as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. This family is contained in a larger one of the thiamine biosynthesis protein ThiJ and its homologs.; GO: 0016798 hydrolase activity acting on glycosyl bonds.
Probab=65.58 E-value=3.1 Score=20.44 Aligned_cols=53 Identities=32% Similarity=0.570 Sum_probs=37.6
Q ss_pred CCCCEEEEEEEECCCCCC------HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC--CCCCCCC
Q ss_conf 356311014663078530------567788654101111111356531011111000--2234675
Q gi|255764494|r 323 GLSPSDIDEVVLVGGMTR------MPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQ--AGVLQGD 380 (652)
Q Consensus 323 ~~~~~~I~~V~lvGGssr------iP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~--a~~ls~~ 380 (652)
++++++-|.+++.||.+. -+.+.+++++++.+. +. --|++.|+-+. |.+|+|+
T Consensus 71 ~v~~~~YDal~ipGG~a~~e~LR~d~~~~~lvR~f~e~g--K~---vaaIChgp~lLi~A~VlrGk 131 (189)
T TIGR01382 71 DVDPEDYDALVIPGGRASPEYLRLDEKVIRLVREFVEKG--KP---VAAICHGPQLLISAGVLRGK 131 (189)
T ss_pred CCCHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC--CE---EEEEECCCEEEEECCEECCC
T ss_conf 478525647897177356000148768999999984178--81---99984530000025510375
No 136
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=65.41 E-value=8.6 Score=17.12 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=31.2
Q ss_pred HHHHCCCCCCHHCCCCCEEEEEEEECCCCCC---HHHHHHHHHHCC-CCC-C--CCCCCCC-CHHHHHHHHCC
Q ss_conf 0110011110101356311014663078530---567788654101-111-1--1135653-10111110002
Q gi|255764494|r 310 KTVEPCKKCLQDAGLSPSDIDEVVLVGGMTR---MPKIQQSVQDFF-NKS-P--SKGVNPD-EVVAMGAAIQA 374 (652)
Q Consensus 310 ~~~~~i~~~L~~a~~~~~~I~~V~lvGGssr---iP~v~~~i~~~f-g~~-~--~~~~npd-eaVa~GAA~~a 374 (652)
.....++.+|+.. +-=+.||||.. =|.|-+.-.+.. |.. . +.++|-| +.||.-|--|.
T Consensus 186 EAak~lEdvLqAV-------dvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSanldlDy~~ia~AA~ky~ 251 (403)
T COG2069 186 EAAKTLEDVLQAV-------DVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASANLDLDYERIAEAALKYD 251 (403)
T ss_pred HHHHHHHHHHHHC-------CCCEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCC
T ss_conf 9999999999754-------86889668999764979999998761576477511555667999999998649
No 137
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=65.34 E-value=3.7 Score=19.90 Aligned_cols=77 Identities=26% Similarity=0.361 Sum_probs=50.8
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 72126873110000123420000110011110101356311014663078530567788654101111111356531011
Q gi|255764494|r 288 AQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVA 367 (652)
Q Consensus 288 g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa 367 (652)
+..+++-|-..+|+..+. +++..-...+|++.|-..++| .|+.|=|+--||.+.+.|.+-- .-|-.|+
T Consensus 10 ~~~~riaIV~arfn~~I~---d~ll~gA~~~l~~~G~~~~~i-~vv~VPGa~EiPl~a~~La~~~--------~yDAvv~ 77 (152)
T COG0054 10 AKGLRIAIVVARFNDDIT---DALLEGAVDALKRHGADVDNI-DVVRVPGAFEIPLAAKKLARTG--------KYDAVVA 77 (152)
T ss_pred CCCCEEEEEEEEHHHHHH---HHHHHHHHHHHHHCCCCCCCC-EEEEECCCCHHHHHHHHHHHCC--------CCCEEEE
T ss_conf 777569999754327999---999999999999829974452-6998287232689999997318--------9566999
Q ss_pred HHHHHCCCC
Q ss_conf 111000223
Q gi|255764494|r 368 MGAAIQAGV 376 (652)
Q Consensus 368 ~GAA~~a~~ 376 (652)
.||-+.+..
T Consensus 78 lG~VIrG~T 86 (152)
T COG0054 78 LGAVIRGET 86 (152)
T ss_pred EEEEEECCC
T ss_conf 646981797
No 138
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase; InterPro: IPR002292 The ornithine carbamoyltransferases are a family of enzymes that catalyse the production of citrulline from carbamoyl-phosphate and ornithine . This reaction is part of the arginine biosynthetic pathway, and in some organisms the reaction is also part of the arginine deaminase pathway . In most prokaryotes, and some lower eukaryotes, the enzyme is found in the cytoplasm, but in higher eukaryotes, such as mammals, the enzyme is found in the mitochondrial matrix and functions as part of the urea cycle. In most organisms analysed to date, the enzyme has been shown to consist of a trimer of identical or nonidentical subunits . Extensive similarity has been found within the ornithine carbamoyltransferase family, some of the conserved areas being important in catalysis . The C-terminal region of these enzymes shows a degree of similarity to the aspartate carbamoyltransferases, which are also known to bind carbamoyl- phosphate . This region contains a highly conserved Cys residue (in a His-Cys-Lys-Pro motif) implicated in ornithine binding . ; GO: 0004585 ornithine carbamoyltransferase activity, 0006520 amino acid metabolic process, 0009348 ornithine carbamoyltransferase complex.
Probab=65.28 E-value=8.7 Score=17.10 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=24.5
Q ss_pred HHHHHHHCC--------CCCCCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHH
Q ss_conf 002067549--------8687267876520198699975998279995795871999999999
Q gi|255764494|r 66 IFAAKRLIG--------RRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVL 120 (652)
Q Consensus 66 i~~~KrliG--------~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL 120 (652)
|.+.-|-|| |.|.+..++...++....| |..-...+.|.|++|.+|
T Consensus 90 i~DTARVLsRyVD~I~~R~~~h~~v~~lA~yasVPV---------INgLtD~~HPcQ~LADll 143 (341)
T TIGR00658 90 IKDTARVLSRYVDGIMARVYKHEDVEELAKYASVPV---------INGLTDLFHPCQALADLL 143 (341)
T ss_pred CCCHHHHHCCEEEEEEEECCCHHHHHHHHHHCCCCE---------ECCCCCCCCHHHHHHHHH
T ss_conf 000110203156567773255378999985489854---------605568552379999988
No 139
>pfam02801 Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain. The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=65.11 E-value=3.6 Score=20.00 Aligned_cols=52 Identities=25% Similarity=0.341 Sum_probs=41.0
Q ss_pred CCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCCC
Q ss_conf 34200001100111101013563110146630785305--67788654101111
Q gi|255764494|r 304 VNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNKS 355 (652)
Q Consensus 304 ~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~~ 355 (652)
..|--......++++|+++++++++|+.|..-|-+|.. |.=-+.|.+.|+..
T Consensus 20 ~~P~~~~~~~~i~~Al~~agi~p~~I~~i~aHgtgT~~gD~~E~~ai~~~f~~~ 73 (117)
T pfam02801 20 TAPNGPAQARAIRAALADAGLDPEDVDYVEAHGTGTPLGDPIEAEALKAVFGPG 73 (117)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCC
T ss_conf 791999999999999999098998979898753768543799999999996637
No 140
>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=64.62 E-value=4.8 Score=19.04 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=40.0
Q ss_pred CCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf 34200001100111101013563110146630785305--6778865410111
Q gi|255764494|r 304 VNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK 354 (652)
Q Consensus 304 ~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~ 354 (652)
..|--......++++|++|++.+++|+.|+.-|-+|.+ +.=-+.|++.|+.
T Consensus 274 ~~P~~~~~~~~~~~Al~~a~i~p~~I~yieaHgtgt~~gD~~E~~al~~~f~~ 326 (424)
T smart00825 274 TAPSGPAQARLIRQALARAGVDPADVDYVEAHGTGTPLGDPIEAEALAAVFGQ 326 (424)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
T ss_conf 89998999999999999829896646879960366877799999999999623
No 141
>PRK08142 acetyl-CoA acetyltransferase; Provisional
Probab=64.50 E-value=4 Score=19.67 Aligned_cols=17 Identities=18% Similarity=0.045 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHCCCCH
Q ss_conf 65536787642013430
Q gi|255764494|r 231 LVEHICDTFKKENGIDL 247 (652)
Q Consensus 231 l~~~~~~~~~~~~~~d~ 247 (652)
++-.+..++-.+|+.+.
T Consensus 145 ~~Al~a~rym~~yG~t~ 161 (388)
T PRK08142 145 LYGMCAMRHMHEYGTTS 161 (388)
T ss_pred HHHHHHHHHHHHHCCCH
T ss_conf 99999999999979699
No 142
>pfam08735 DUF1786 Putative pyruvate format-lyase activating enzyme (DUF1786). This family is annotated as pyruvate formate-lyase activating enzyme (EC:1.97.1.4) in UniProt. It is not clear where this annotation comes from.
Probab=64.50 E-value=8.9 Score=16.99 Aligned_cols=96 Identities=20% Similarity=0.318 Sum_probs=55.0
Q ss_pred EEEEECCEEECHHHHHHHHHHHHHHHHHHHH--CCCCCEEEE--EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 7999579587199999999999999999983--884733698--537788740257886344211222222221024788
Q gi|255764494|r 101 AWIEAQGKQYSPSQISAIVLQKMKETAESFL--GETVSKAVI--TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 101 ~~~~~~~~~~~peei~a~iL~~lk~~ae~~l--~~~v~~~Vi--tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
+.+-++...|.| ..+..+.+.- ..+..| |..+.+.+- ++|.+|+-. +++.++..-+| .++-++-+||
T Consensus 81 vavAvQDHG~~p-~~SnR~~RF~--~~~~~L~~g~~~~~~~~~d~~P~~ftRm--~av~~sl~~~~----~~vmDTg~AA 151 (252)
T pfam08735 81 VAVAVQDHGFAP-GMSNRIFRFE--LIREKLDEGGRPEDFLFRDEVPPTFSRM--KAIADSLKGAG----ALVMDTGPAA 151 (252)
T ss_pred EEEEECCCCCCC-CCCCHHHHHH--HHHHHHHCCCCHHHEEECCCCCHHHHHH--HHHHHHHCCCC----EEEECCHHHH
T ss_conf 899962688898-9741588999--9999986389988806557895142479--99999735488----0777278999
Q ss_pred HHHHCC---CCCCCEEEEEEECCCEEEEEEEE
Q ss_conf 886034---45655079987244114543101
Q gi|255764494|r 177 LAYGLD---KKDARTVIVFDFGGGTFDVSLLE 205 (652)
Q Consensus 177 l~Y~~~---~~~~~~vlV~D~Gggt~dvsi~~ 205 (652)
+.=++. ......++|+|+|-|++-..++.
T Consensus 152 vlGaL~d~~~~~~~~~ivvnvGN~HT~a~lv~ 183 (252)
T pfam08735 152 VLGALEDPKVSAKNPILVVNIGNGHTLAALVD 183 (252)
T ss_pred HHHHCCCHHHHCCCCEEEEEECCCCEEEEEEE
T ss_conf 86320286675659749998078747999996
No 143
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=64.33 E-value=5.7 Score=18.46 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf 234200001100111101013563110146630785305--6778865410111
Q gi|255764494|r 303 LVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK 354 (652)
Q Consensus 303 l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~ 354 (652)
+..|--+.....++++|+++++.+++|+.|..-|-+|.. |.=-+.|.+.|+.
T Consensus 273 ~~~P~~~~~~~~~~~al~~agi~~~~i~yieaHgtgT~~gD~~E~~ai~~~f~~ 326 (421)
T cd00833 273 ITAPSGEAQAALIRRAYARAGVDPSDIDYVEAHGTGTPLGDPIEVEALAKVFGG 326 (421)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 888756689999999999729994412089974476866699999999999612
No 144
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=64.18 E-value=6.3 Score=18.15 Aligned_cols=58 Identities=24% Similarity=0.295 Sum_probs=42.1
Q ss_pred CCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCCC-CCCCCCCC
Q ss_conf 200001100111101013563110146630785305--67788654101111-11135653
Q gi|255764494|r 306 HLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNKS-PSKGVNPD 363 (652)
Q Consensus 306 ~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~~-~~~~~npd 363 (652)
|--......++++|++|++.++||+.|..-|=+|.. +.=...|.+.||.. +..++.+.
T Consensus 259 p~g~g~~~am~~Al~~a~~~~~di~yv~aHgtgT~~~D~~E~~Ai~~vfg~~~pvss~Ks~ 319 (395)
T PRK09185 259 PEGLGARLAMQAALADAGLEAADIGYINLHGTATPLNDAMESRAVAAVFGDTVPCSSTKPL 319 (395)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 8889999999999997399934366699616768665899999999984888624676411
No 145
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=63.58 E-value=8.9 Score=17.00 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.0
Q ss_pred EEEEECCCCEEEEEEEECCEE
Q ss_conf 699804866069999989955
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNV 24 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~ 24 (652)
.+.||.|||++..|++.++.+
T Consensus 2 ~L~iDiGNT~~~~a~~~~~~~ 22 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGGKV 22 (251)
T ss_pred EEEEEECCCEEEEEEECCCEE
T ss_conf 589981797078998039857
No 146
>PRK13334 consensus
Probab=63.54 E-value=8.4 Score=17.18 Aligned_cols=21 Identities=24% Similarity=0.695 Sum_probs=18.3
Q ss_pred CEEEEECCCCEEEEEEEECCE
Q ss_conf 169980486606999998995
Q gi|255764494|r 3 KVIGIDLGTTNSCVAIMDGKN 23 (652)
Q Consensus 3 ~viGIDlGtt~s~va~~~~~~ 23 (652)
.++-||.|||+.+++++++.+
T Consensus 5 ~lL~IDIGNT~i~~glf~~~~ 25 (262)
T PRK13334 5 PLLAVDIGNTSTVLGLADGSE 25 (262)
T ss_pred EEEEEEECCCCEEEEEEECCE
T ss_conf 089999778805999997891
No 147
>TIGR00459 aspS_bact aspartyl-tRNA synthetase; InterPro: IPR004524 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Aspartyl tRNA synthetase 6.1.1.12 from EC is an alpha2 dimer that belongs to class IIb. Structural analysis combined with mutagenesis and enzymology data on the yeast enzyme point to a tRNA binding process that starts by a recognition event between the tRNA anticodon loop and the synthetase anticodon binding module . This family represents aspartyl-tRNA synthetases from the bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). ; GO: 0000166 nucleotide binding, 0004815 aspartate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006422 aspartyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=63.09 E-value=4.8 Score=19.03 Aligned_cols=48 Identities=27% Similarity=0.450 Sum_probs=36.2
Q ss_pred EEEEEECCCCCCH--HHHHHHHHH-CCCCCCCCCC----CCCCHHHHHHHHCCCC
Q ss_conf 0146630785305--677886541-0111111135----6531011111000223
Q gi|255764494|r 329 IDEVVLVGGMTRM--PKIQQSVQD-FFNKSPSKGV----NPDEVVAMGAAIQAGV 376 (652)
Q Consensus 329 I~~V~lvGGssri--P~v~~~i~~-~fg~~~~~~~----npdeaVa~GAA~~a~~ 376 (652)
|++++|=|||.|| |.||+.|-+ .+|..+...- --.||--+||=-||++
T Consensus 540 lNG~ElGGGSiRIh~~~~Q~~~F~d~Lgid~eea~EkFGFLLeA~~yGaPPHgG~ 594 (653)
T TIGR00459 540 LNGVELGGGSIRIHDPEVQEKVFEDILGIDPEEAREKFGFLLEAFKYGAPPHGGL 594 (653)
T ss_pred EEEEEECCCEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 8306988710464287899999987628898998776356875873576851015
No 148
>TIGR00329 gcp metalloendopeptidase, putative, glycoprotease family; InterPro: IPR000905 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues . Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 , . Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion , . Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis . The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region .; GO: 0008450 O-sialoglycoprotein endopeptidase activity, 0006508 proteolysis.
Probab=62.99 E-value=3.4 Score=20.16 Aligned_cols=48 Identities=21% Similarity=0.403 Sum_probs=36.2
Q ss_pred CHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 000011001111010135631101466307853056778865410111
Q gi|255764494|r 307 LIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK 354 (652)
Q Consensus 307 l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~ 354 (652)
.++..++.++++|++..-+..++..++++||-|---.+|+.|+.....
T Consensus 265 ~~~~Li~~~kral~~qPekf~~~~~~~~~GGVsaN~~LR~~l~~~~~~ 312 (337)
T TIGR00329 265 AFDHLIEKTKRALKDQPEKFTGPKELVLVGGVSANKRLREKLETLCQE 312 (337)
T ss_pred HHHHHHHHHHHHHHHCHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 999889999999851505431776699943188888999999999974
No 149
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=62.94 E-value=6.5 Score=18.04 Aligned_cols=53 Identities=25% Similarity=0.304 Sum_probs=33.7
Q ss_pred ECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 311000012342000011001111010135631101466307853056778865410111
Q gi|255764494|r 295 LTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK 354 (652)
Q Consensus 295 itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~ 354 (652)
-.|+.|...+ ......++++|+.++++++|||.+++-=-..|| .+.+.+.+|.
T Consensus 213 ~Gr~vfk~av----~~~~~~~~~~L~~~~l~~~dId~~vpHQan~ri---~~~i~~~l~~ 265 (323)
T COG0332 213 DGREVFKFAV----RAMPKAIEEVLEKAGLTPEDIDWFVPHQANLRI---IEAIAKKLGI 265 (323)
T ss_pred CCHHHHHHHH----HHHHHHHHHHHHHCCCCHHHCCEECCCCCCHHH---HHHHHHHCCC
T ss_conf 4588999999----999999999999849998899887206454999---9999998299
No 150
>PRK04457 spermidine synthase; Provisional
Probab=62.56 E-value=4.3 Score=19.40 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 22210247888860344565507998724411454310102314654201332245521344766553678764201343
Q gi|255764494|r 167 RIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGID 246 (652)
Q Consensus 167 ~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d 246 (652)
.|+.+-|-+.+++-+....+++|+++-+|||++--.+.+.-+. ..+-.-.||...++...+.|.--
T Consensus 48 ~L~l~Ytr~Mm~~LLf~p~Pk~vl~iGLGgGsl~k~~~~~~P~----------~~i~~VEIdp~Vi~vAr~~F~lP---- 113 (262)
T PRK04457 48 ELVLSYSRAMMGFLLFNPRPQHILQIGLGGGSFAKFIDTYLPD----------TRQTAVEINPQVIAVARNHFELP---- 113 (262)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCC----------CEEEEEECCHHHHHHHHHHCCCC----
T ss_conf 0212889999999865899786999925701999999983986----------75899987889999999865799----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCC
Q ss_conf 02447899999999998854115565035863044346788721268731100001234200001100111101013563
Q gi|255764494|r 247 LKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSP 326 (652)
Q Consensus 247 ~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~ 326 (652)
.+++|--.-.-++++=++. ...++++ +.-|..++.-....+...+|-+.|. .+|. +
T Consensus 114 -~dd~Rl~V~~~Dg~~fv~~---~~~~~Dv----I~vD~fd~~g~~~~L~t~~Fy~~c~-----------~~L~-----~ 169 (262)
T PRK04457 114 -FEDEKFEIIEADGAEYIKV---FPASTDV----ILVDGFDGEQIVDALVTQPFFRDCR-----------NALS-----S 169 (262)
T ss_pred -CCCCCEEEEECCHHHHHHH---CCCCCCE----EEEECCCCCCCCCCCCCHHHHHHHH-----------HHCC-----C
T ss_conf -9997269995538999854---8677788----9996889888860008299999999-----------8649-----8
Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf 11014663078530567788654101111
Q gi|255764494|r 327 SDIDEVVLVGGMTRMPKIQQSVQDFFNKS 355 (652)
Q Consensus 327 ~~I~~V~lvGGssriP~v~~~i~~~fg~~ 355 (652)
..|=.+=|-|+..+.+..-+.+...|+..
T Consensus 170 ~Gvlv~Nl~~~~~~~~~~l~~i~~~F~~~ 198 (262)
T PRK04457 170 DGVFVTNLWSGDKRYQRYIERLLSVFEGR 198 (262)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCE
T ss_conf 93999986889986599999999972873
No 151
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Probab=62.12 E-value=6.9 Score=17.83 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=39.3
Q ss_pred CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf 4200001100111101013563110146630785305--6778865410111
Q gi|255764494|r 305 NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK 354 (652)
Q Consensus 305 ~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~ 354 (652)
.|--......++++|++|+++++||+.|..-|-+|.. |.=-+.|.+.||.
T Consensus 335 ~p~g~g~~~am~~AL~~Agl~~~dIdyInaHGTgT~~gD~~E~~Ai~~vfg~ 386 (477)
T PTZ00050 335 EPNGKGLCNSIHKAIKNANININDVKYINAHGTSTNLNDKIETKVFKNVFKD 386 (477)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 9799999999999999717897450089961776887899999999998657
No 152
>PRK00976 hypothetical protein; Provisional
Probab=61.96 E-value=3.6 Score=19.98 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=40.0
Q ss_pred EEEEEECC--CCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHE
Q ss_conf 01466307--85305677886541011111113565310111110002234675221000
Q gi|255764494|r 329 IDEVVLVG--GMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLL 386 (652)
Q Consensus 329 I~~V~lvG--GssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~ 386 (652)
.+.|+|.| |+.+-|-|.+.|.++++.++. .+ +-++.|.|+|..|.-.....++++=
T Consensus 262 ~~~V~LaGS~g~~~~~~v~~~i~~~l~~~~~-vl-~~~saAiG~A~IArDI~~Gkk~ILG 319 (324)
T PRK00976 262 DANVVLAGSVGEMDEPNVAERIKELLDGNVL-VL-GKWSAAIGLALIARDIFNGKKEILG 319 (324)
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHCCCCE-EE-CHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 8887984133345674488999998668838-73-5566665689999998759641600
No 153
>PRK12566 glycine dehydrogenase; Provisional
Probab=61.92 E-value=9.9 Score=16.67 Aligned_cols=61 Identities=30% Similarity=0.482 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHH------HHCC---------CCCEEEEEECCCCC---CCHH---H----HHHH----HHHHCCCCC--C
Q ss_conf 999999999999------8388---------47336985377887---4025---7----8863----442112222--2
Q gi|255764494|r 118 IVLQKMKETAES------FLGE---------TVSKAVITVPAYFN---DAQR---Q----ATKD----AGRIAGLDV--L 166 (652)
Q Consensus 118 ~iL~~lk~~ae~------~l~~---------~v~~~VitVP~~f~---~~qR---~----a~~~----Aa~~AGl~v--~ 166 (652)
.+|.+|+++|.+ ++|. -|.+-|+.-|.||| +.|- | |+.+ -+.+.|+++ .
T Consensus 65 e~l~~l~~ia~kN~~~~sfIG~Gyy~t~tP~vI~Rnvlenp~wyTaYTPYQpEISQGrLeaL~nfQTmi~dLTGm~vaNA 144 (954)
T PRK12566 65 AALARLRGYAEQNQVWTSLIGMGYHGTVTPTVILRNVLENPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLANA 144 (954)
T ss_pred HHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999997378642230177678847567777530488750477998646766999999999999999878760057
Q ss_pred CCCCCHHHHHHH
Q ss_conf 222102478888
Q gi|255764494|r 167 RIINEPTAAALA 178 (652)
Q Consensus 167 ~li~EptAAal~ 178 (652)
.|++|.||||=+
T Consensus 145 SllDeaTAaAEA 156 (954)
T PRK12566 145 SLLDEATAAAEA 156 (954)
T ss_pred CCHHHHHHHHHH
T ss_conf 600089999999
No 154
>PRK13327 pantothenate kinase; Reviewed
Probab=61.85 E-value=6.5 Score=18.06 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=19.3
Q ss_pred CCCEEEEECCCCEEEEEEEECCEE
Q ss_conf 981699804866069999989955
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDGKNV 24 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~~~~ 24 (652)
|+..+ ||.|||+.+.+++.++..
T Consensus 1 M~~ll-iDiGNTriKwa~~~~~~~ 23 (242)
T PRK13327 1 MSEWL-FDLGNSRFKYAPLHGNRA 23 (242)
T ss_pred CCCEE-EEECCCHHEEEEECCCCC
T ss_conf 97278-996676324899708964
No 155
>pfam02075 RuvC Crossover junction endodeoxyribonuclease RuvC.
Probab=61.14 E-value=6.5 Score=18.07 Aligned_cols=18 Identities=22% Similarity=0.564 Sum_probs=15.6
Q ss_pred EEEEECCCCEEEEEEEEC
Q ss_conf 699804866069999989
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDG 21 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~ 21 (652)
|+|||=|+.++-.|+.+.
T Consensus 1 ILGIDPGl~~tG~avi~~ 18 (148)
T pfam02075 1 ILGIDPGSRVTGYGVIEH 18 (148)
T ss_pred CEEECCCCCCEEEEEEEE
T ss_conf 988788868607999997
No 156
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=60.87 E-value=7.2 Score=17.69 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=17.1
Q ss_pred CCCEEEEECCCCEEEEEEEEC
Q ss_conf 981699804866069999989
Q gi|255764494|r 1 MSKVIGIDLGTTNSCVAIMDG 21 (652)
Q Consensus 1 Ms~viGIDlGtt~s~va~~~~ 21 (652)
|=.|+|||=|++++-.|+.+.
T Consensus 1 mMrILGIDPGl~~tG~gvie~ 21 (169)
T PRK00039 1 MMRILGIDPGLRRTGYGVIEV 21 (169)
T ss_pred CCEEEEECCCCCCEEEEEEEE
T ss_conf 958999883668608999997
No 157
>PRK06158 thiolase; Provisional
Probab=60.85 E-value=4 Score=19.68 Aligned_cols=51 Identities=12% Similarity=-0.007 Sum_probs=22.1
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 719999999999999999998388473369853778874025788634421122222
Q gi|255764494|r 110 YSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVL 166 (652)
Q Consensus 110 ~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~ 166 (652)
.++.++...-...-...|- .-...|+.+++.-+..+...+. -++..|+...
T Consensus 26 ~s~~eL~~eA~~~Al~DAG-i~~~dID~~~~g~~~~~~~g~~-----~a~~lGl~~~ 76 (384)
T PRK06158 26 LSAMELLAQAAVRALADAG-LTMADVDGLFTASPDSALWGLS-----VAEYLGIRPR 76 (384)
T ss_pred CCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCCHHHH-----HHHHCCCCCC
T ss_conf 7999999999999999759-9999909899971576653999-----9998299981
No 158
>PRK13324 pantothenate kinase; Reviewed
Probab=60.47 E-value=10 Score=16.49 Aligned_cols=21 Identities=19% Similarity=0.659 Sum_probs=18.2
Q ss_pred EEEEECCCCEEEEEEEECCEE
Q ss_conf 699804866069999989955
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNV 24 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~ 24 (652)
++-||.|+|+.+++++++++.
T Consensus 2 ~L~IDIGNT~ik~g~~~~~~~ 22 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDRI 22 (258)
T ss_pred EEEEEECCCCEEEEEEECCEE
T ss_conf 899998733359999999999
No 159
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=59.67 E-value=3.8 Score=19.82 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=48.1
Q ss_pred EEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 68731100001234200001100111101013563110146630785305677886541011111113565310111110
Q gi|255764494|r 292 NMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAA 371 (652)
Q Consensus 292 ~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA 371 (652)
.+-|-...|++- +.++..+-..+.|.+.|...++|+ |+-|=|+--+|..-+.+.+ +-+.|-.||+||-
T Consensus 12 riaIV~s~~n~~---It~~Ll~ga~~~L~~~gv~~~~i~-v~~VPGAfEiP~aa~~l~~--------~~~~daiIalG~V 79 (158)
T PRK12419 12 RIAFVQARWHAD---IVDQAREGFVAEIAARGGAASQVD-VFEVPGAFEIPLHAKTLAK--------TGRYAAIVAAALV 79 (158)
T ss_pred EEEEEECCCCHH---HHHHHHHHHHHHHHHCCCCHHHEE-EEECCCHHHHHHHHHHHHH--------CCCCCEEEEEEEE
T ss_conf 699997677589---999999999999998599855458-9982867899999999985--------5999889988789
Q ss_pred HCCC
Q ss_conf 0022
Q gi|255764494|r 372 IQAG 375 (652)
Q Consensus 372 ~~a~ 375 (652)
+.+.
T Consensus 80 IrGe 83 (158)
T PRK12419 80 VDGG 83 (158)
T ss_pred ECCC
T ss_conf 8289
No 160
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=59.42 E-value=8.9 Score=17.00 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=36.2
Q ss_pred HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf 001100111101013563110146630785305--6778865410111
Q gi|255764494|r 309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK 354 (652)
Q Consensus 309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~ 354 (652)
......++.+|+++++++++|+.|..-|=+|.. |.=-+.|++.||.
T Consensus 270 ~~~~~a~~~Al~~agi~p~~I~yI~aHgTGT~~gD~~E~~Ai~~~fg~ 317 (399)
T cd00832 270 PGLARAIRLALADAGLTPEDVDVVFADAAGVPELDRAEAAALAAVFGP 317 (399)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 999999999999719996705699983375855699999999999669
No 161
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative; InterPro: IPR008275 This domain is found in a set of closely related proteins including the (R)-2-hydroxyglutaryl-CoA dehydratase activase of Acidaminococcus fermentans, in longer proteins from Methanococcus jannaschii and Methanobacterium thermoautotrophicum that share an additonal N-terminal domain, in a protein described as a subunit of the benzoyl-CoA reductase of Rhodopseudomonas palustris, and in two repeats of an uncharacterised protein of Aquifex aeolicus. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. .
Probab=59.24 E-value=6.2 Score=18.17 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=37.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHH
Q ss_conf 146630785305677886541011-1111135653101111100
Q gi|255764494|r 330 DEVVLVGGMTRMPKIQQSVQDFFN-KSPSKGVNPDEVVAMGAAI 372 (652)
Q Consensus 330 ~~V~lvGGssriP~v~~~i~~~fg-~~~~~~~npdeaVa~GAA~ 372 (652)
..++++||.+....+.+.+++.++ .++...-.|.-+-+.||++
T Consensus 215 ~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~g~~~ 258 (259)
T TIGR00241 215 PPIVLTGGVSKNKGLVKALEKELGGLKVLTPPEPQLVGAVGAAL 258 (259)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
T ss_conf 55022052467789999999874673111575213443222222
No 162
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=59.05 E-value=4.7 Score=19.09 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=29.3
Q ss_pred HHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf 000110011110101356311014663078530567788654101111
Q gi|255764494|r 308 IQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKS 355 (652)
Q Consensus 308 ~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~ 355 (652)
+..+...++++|++++++++|||.+++-=++.++ .+.+.+.+|.+
T Consensus 225 ~~~~~~~i~~~L~~~gl~~~did~~i~Hq~~~~~---~~~i~~~Lgl~ 269 (326)
T PRK12879 225 VRGMPKAAKQVLEKAGLTKDDIDWVIPHQANLRI---IESLCEKLGIP 269 (326)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHH---HHHHHHHCCCC
T ss_conf 8756999999999859997788989986887899---99999980979
No 163
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=59.03 E-value=4.8 Score=19.05 Aligned_cols=44 Identities=23% Similarity=0.344 Sum_probs=29.1
Q ss_pred HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf 00110011110101356311014663078530567788654101111
Q gi|255764494|r 309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKS 355 (652)
Q Consensus 309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~ 355 (652)
..+...++++|++++++++|||.+++-=++.|+ -+.+.+.+|.+
T Consensus 220 ~~~~~~i~~~L~~~gl~~~dId~~i~Hq~~~~~---~~~~~~~lgi~ 263 (319)
T PRK09352 220 REMAKVAREALEAAGLTPEDIDWLVPHQANLRI---IDATAKKLGLP 263 (319)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHH---HHHHHHHCCCC
T ss_conf 854999999998749983238789982676899---99999981979
No 164
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=58.68 E-value=5.7 Score=18.44 Aligned_cols=65 Identities=28% Similarity=0.362 Sum_probs=33.6
Q ss_pred ECHHHHHHHHHHHH-------HHHHHHHHCC-CC--CEEEEEECCCCCCCHHHHHHHH-HHHCCCCCCCCCCCHHHHH
Q ss_conf 71999999999999-------9999998388-47--3369853778874025788634-4211222222221024788
Q gi|255764494|r 110 YSPSQISAIVLQKM-------KETAESFLGE-TV--SKAVITVPAYFNDAQRQATKDA-GRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 110 ~~peei~a~iL~~l-------k~~ae~~l~~-~v--~~~VitVP~~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAa 176 (652)
.+.-||++.=|... ...|+.-|.. +| .=+. ==|+-|+--++|.+==| |-++-..+| |++||||+-
T Consensus 105 vsalevV~ePL~~~G~~~~~A~~~A~~LL~rLniPERLW~-LpPaTFSGGEqQRVNIARg~i~d~PiL-LLdEPTASL 180 (224)
T TIGR02324 105 VSALEVVAEPLLERGVPREAARARARELLARLNIPERLWS-LPPATFSGGEQQRVNIARGFIADYPIL-LLDEPTASL 180 (224)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCC-CCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCC
T ss_conf 6728888787987289589999999999975574024428-878865660589999987652577400-113554024
No 165
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=57.86 E-value=7.8 Score=17.43 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=10.9
Q ss_pred CCCEEEEEEECCCEEEEE
Q ss_conf 655079987244114543
Q gi|255764494|r 185 DARTVIVFDFGGGTFDVS 202 (652)
Q Consensus 185 ~~~~vlV~D~Gggt~dvs 202 (652)
.+++|||+-+|-.-|..|
T Consensus 400 tg~~VLVvGlGPAG~tLs 417 (1048)
T PRK06567 400 TNYNILVTGLGPAGFSLS 417 (1048)
T ss_pred CCCEEEEEECCCCCHHHH
T ss_conf 996489992486520188
No 166
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=57.78 E-value=2.5 Score=21.13 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=15.2
Q ss_pred HCCCCCCHHCCCCCEEEEEEEECCCCCC
Q ss_conf 0011110101356311014663078530
Q gi|255764494|r 313 EPCKKCLQDAGLSPSDIDEVVLVGGMTR 340 (652)
Q Consensus 313 ~~i~~~L~~a~~~~~~I~~V~lvGGssr 340 (652)
..|++.|++.++.+. .|+.||-.+|
T Consensus 199 ~~i~~llk~~~l~p~---~viYVGDEtR 223 (273)
T PRK13225 199 RALSQLVAREGWQPA---AVMYVGDETR 223 (273)
T ss_pred HHHHHHHHHHCCCCC---CEEEECCCCC
T ss_conf 569999998289964---4689666412
No 167
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=57.69 E-value=12 Score=16.16 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=4.3
Q ss_pred HHHHHHCCCCC
Q ss_conf 88654101111
Q gi|255764494|r 345 QQSVQDFFNKS 355 (652)
Q Consensus 345 ~~~i~~~fg~~ 355 (652)
.++...+||.+
T Consensus 279 ~~l~~~L~g~~ 289 (554)
T TIGR03545 279 KNFAVDLFGEE 289 (554)
T ss_pred HHHHHHHHHHH
T ss_conf 99999998699
No 168
>pfam00814 Peptidase_M22 Glycoprotease family. The Peptidase M22 proteins are part of the HSP70-actin superfamily. The region represented here is an insert into the fold and is not found in the rest of the family (beyond the Peptidase M22 family). Included in this family are the Rhizobial NodU proteins and the HypF regulator. This region also contains the histidine dyad believed to coordinate the metal ion and hence provide catalytic activity. Interestingly the histidines are not well conserved, and there is a lack of experimental evidence to support peptidase activity as a general property of this family. There also appear to be instances of this domain outside of the HSP70-actin superfamily.
Probab=57.36 E-value=6.3 Score=18.12 Aligned_cols=24 Identities=17% Similarity=0.538 Sum_probs=18.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 014663078530567788654101
Q gi|255764494|r 329 IDEVVLVGGMTRMPKIQQSVQDFF 352 (652)
Q Consensus 329 I~~V~lvGGssriP~v~~~i~~~f 352 (652)
+..+++.||-+.--.+|+.+.+..
T Consensus 182 ~k~lvv~GGVaaN~~Lr~~~~~~~ 205 (225)
T pfam00814 182 AKELVILGGVAANKRLREALTEMA 205 (225)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHC
T ss_conf 498999894999999999999725
No 169
>PRK13323 consensus
Probab=57.16 E-value=12 Score=16.09 Aligned_cols=21 Identities=38% Similarity=0.814 Sum_probs=18.3
Q ss_pred EEEEECCCCEEEEEEEECCEE
Q ss_conf 699804866069999989955
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNV 24 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~ 24 (652)
++-||.|+|+.++++++++..
T Consensus 2 ~L~iDIGNT~ik~gl~~~~~~ 22 (258)
T PRK13323 2 LLAIDVGNTHTVVGLFDGAKV 22 (258)
T ss_pred EEEEEECCCCEEEEEEECCEE
T ss_conf 899998863039999989999
No 170
>PRK09604 putative DNA-binding/iron metalloprotein/AP endonuclease; Reviewed
Probab=56.92 E-value=12 Score=16.07 Aligned_cols=138 Identities=15% Similarity=0.322 Sum_probs=63.6
Q ss_pred EEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 07998724411454310102314654201332245521344766553678764201343024478999999999988541
Q gi|255764494|r 188 TVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIE 267 (652)
Q Consensus 188 ~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~ 267 (652)
-++..=+-||++.+-.++ ..+.+++++..-|... |+-||+.=. .+ +.....- ..+.+|-...
T Consensus 128 Pfl~LlvSGGhT~l~~~~-~~~~~~ilG~T~Dda~-GeafDKvar-~L--------GL~yPgG-p~ie~lA~~g------ 189 (335)
T PRK09604 128 PFLALLVSGGHTQLVAVK-GVGDYEILGETLDDAA-GEAFDKVAR-LL--------GLGYPGG-PKIDKLAEKG------ 189 (335)
T ss_pred CEEEEEECCCCEEEEEEC-CCCCEEEEEEECCCCH-HHHHHHHHH-HC--------CCCCCCC-HHHHHHHHHC------
T ss_conf 858999806846999984-7974799877615511-778999998-72--------9999986-6999999828------
Q ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEE---------EC-----CCCCCCCCCCCHHHH----HHCCCCCCHHCCCCCEEE
Q ss_conf 155650358630443467887212687---------31-----100001234200001----100111101013563110
Q gi|255764494|r 268 LSSTSQTEINLPFISANSAGAQHLNMK---------LT-----RAQFERLVNHLIQKT----VEPCKKCLQDAGLSPSDI 329 (652)
Q Consensus 268 LS~~~~~~i~i~~~~~~~~~g~d~~~~---------it-----R~~fe~l~~~l~~~~----~~~i~~~L~~a~~~~~~I 329 (652)
+. ..+.+|.-... .++.||+++ +. ......+|..+-+-+ .+.++++++.. .+
T Consensus 190 ---~~-~~~~~P~~~~~-~~~~dfSFSGlkTav~~~i~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~A~~~~-----~~ 259 (335)
T PRK09604 190 ---DP-EAFDFPRPMKG-RPGLDFSFSGLKTAVLNLIEKNKQKEQTKADIAASFQEAVVDVLVEKTKRALKKT-----GV 259 (335)
T ss_pred ---CC-CCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CC
T ss_conf ---92-31277842038-9987561410999999999854445566999999999999999999999999997-----99
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 146630785305677886541011
Q gi|255764494|r 330 DEVVLVGGMTRMPKIQQSVQDFFN 353 (652)
Q Consensus 330 ~~V~lvGGssriP~v~~~i~~~fg 353 (652)
..++++||-+.-..+|+.++++..
T Consensus 260 k~lvv~GGVaaN~~LR~~l~~~~~ 283 (335)
T PRK09604 260 KTLVVAGGVAANSYLREKLAELCK 283 (335)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 879994647777999999999999
No 171
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=56.89 E-value=5.3 Score=18.70 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=38.9
Q ss_pred EEEEEECC--CCCCHH-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 01466307--853056-7788654101111111356531011111000223467522100
Q gi|255764494|r 329 IDEVVLVG--GMTRMP-KIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLL 385 (652)
Q Consensus 329 I~~V~lvG--GssriP-~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~ 385 (652)
...|.|+| ||.+-| .|.+.|.++++.++ ..+ .-++.|.|+|..|.-.....++++
T Consensus 263 ~~~v~lags~Gs~~~p~~~~~~i~~~l~~~~-~vl-~~~saAiG~A~IArDI~~Gkk~IL 320 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKV-LVL-DSESAAIGLALIAEDIFSGKREIL 320 (326)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHCCCC-EEE-CHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 8877986113234781668999999857980-873-666776568999999876974270
No 172
>PRK13332 consensus
Probab=56.86 E-value=12 Score=16.06 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=18.4
Q ss_pred EEEEECCCCEEEEEEEECCEE
Q ss_conf 699804866069999989955
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNV 24 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~ 24 (652)
.+-||.|||+.+++++++++.
T Consensus 2 ~L~IDIGNT~ik~~l~~~~~~ 22 (251)
T PRK13332 2 LLLFDVGNTHTVVGITEDGKT 22 (251)
T ss_pred EEEEEECCCCEEEEEEECCEE
T ss_conf 899998887069999989999
No 173
>pfam01150 GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family.
Probab=56.78 E-value=8.2 Score=17.28 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=15.7
Q ss_pred CCEEEEEEECCCEEEEEE
Q ss_conf 550799872441145431
Q gi|255764494|r 186 ARTVIVFDFGGGTFDVSL 203 (652)
Q Consensus 186 ~~~vlV~D~Gggt~dvsi 203 (652)
..++-|+||||+++.++-
T Consensus 159 ~~T~gvlDlGGaStQIaf 176 (424)
T pfam01150 159 QSTVGVIDLGGASTQIAF 176 (424)
T ss_pred CCCEEEEECCCCEEEEEE
T ss_conf 772699951785367887
No 174
>PRK13330 consensus
Probab=56.50 E-value=12 Score=16.02 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=18.0
Q ss_pred EEEEECCCCEEEEEEEECCEE
Q ss_conf 699804866069999989955
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNV 24 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~ 24 (652)
.+-||.|+||.++++++++..
T Consensus 2 ~L~iDIGNT~i~~glf~~~~~ 22 (257)
T PRK13330 2 LLVVDVGNTNTVFGIFENGKK 22 (257)
T ss_pred EEEEEECCCCEEEEEEECCEE
T ss_conf 799997788069999989979
No 175
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=55.98 E-value=5.2 Score=18.76 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=34.9
Q ss_pred CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 420000110011110101356311014663078530567788654101111111
Q gi|255764494|r 305 NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSK 358 (652)
Q Consensus 305 ~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~ 358 (652)
+..+......++++|++++++++|||.+++-=++-++ .+.+.+.+|.++.+
T Consensus 224 ~~~~~~~~~~~~~~L~~~gl~~~dId~~v~HQ~n~~~---~~~v~~~lgl~~ek 274 (327)
T PRK05963 224 TEAVRMMTGASQNVLASAAMLPQDIDRFFPHQANARI---VDKVCETLGIPRAK 274 (327)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHH---HHHHHHHCCCCHHH
T ss_conf 9999852999999999849982228889986799899---99999982979787
No 176
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=55.88 E-value=12 Score=15.95 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=30.9
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CC--CCCCCHHHHHHHHHHHCCCC
Q ss_conf 58719999999999999999998388473369853--77--88740257886344211222
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PA--YFNDAQRQATKDAGRIAGLD 164 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~--~f~~~qR~a~~~Aa~~AGl~ 164 (652)
+.++|+++.+..++.+.+.+.- -...|+++++.. |+ .+....|++.+ .|||.
T Consensus 28 ~~~~~~~L~a~~~~~~l~r~gi-~~~~Id~vi~G~~~~~g~~~~~~aR~~~l----~aGlp 83 (394)
T PRK06445 28 NDLRPEELAAVLINALIEKTGI-KPEEIGDVITGCALQVGENWLYGGRHVVL----LAKLP 83 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHCCC-CHHHCCEEEEECCCCCCCCCCCHHHHHHH----HCCCC
T ss_conf 7899999999999999987498-98996979996475556566748899999----76999
No 177
>pfam09726 Macoilin Transmembrane protein. This entry is a highly conserved protein present in eukaryotes.
Probab=55.51 E-value=12 Score=15.90 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|255764494|r 529 ETKNHAESLIYS 540 (652)
Q Consensus 529 eakN~lEs~iy~ 540 (652)
++|..+|.-+-+
T Consensus 490 ~~r~~~E~qL~~ 501 (680)
T pfam09726 490 DSRVNAEKQLAE 501 (680)
T ss_pred HHHHHHHHHHHH
T ss_conf 989889999999
No 178
>TIGR01314 gntK_FGGY gluconate kinase; InterPro: IPR006002 Gluconate kinase (2.7.1.12 from EC) is an alpha/beta structure consisting of a twisted parallel beta-sheet surrounded by alpha-helices with overall topology similar to nucleoside monophosphate (NMP) kinases, such as adenylate kinase. Significant conformational changes are induced upon binding of ATP to the enzyme. The largest changes involve a hinge-bending motion of the NMP(bind) part and a motion of the LID with adjacent helices, which opens the cavity to the second substrate, gluconate. The opening of the active site cleft upon ATP binding is the opposite of what has been observed in the NMP kinase family so far, which usually close their active site to prevent fortuitous hydrolysis of ATP. The beta and gamma-phosphate groups of ATP bind in the predicted P-loop. A conserved lysine side-chain interacts with the gamma-phosphate group, and might promote phosphoryl transfer. ATP + D-gluconate = ADP + 6-phospho-D-gluconate. Gluconate-6-phosphate binds with its phosphate group in a similar position as the gamma-phosphate of ATP, consistent with inline phosphoryl transfer. . ; GO: 0019200 carbohydrate kinase activity, 0019521 D-gluconate metabolic process.
Probab=54.93 E-value=11 Score=16.24 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=44.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 014663078530567788654101111111356531011111000223467522100
Q gi|255764494|r 329 IDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLL 385 (652)
Q Consensus 329 I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~ 385 (652)
+..|--+||.++.-.=++++.+.|..++... ..-|+-|+||++.|-.--|.+.++.
T Consensus 403 ~~~I~ATGGFa~SEvW~Q~~sDIFe~~~~VP-ES~EssCLgA~ilg~~A~G~Ied~~ 458 (506)
T TIGR01314 403 LKMIQATGGFAKSEVWRQMLSDIFEQEIVVP-ESYESSCLGACILGLKALGKIEDFS 458 (506)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCHH
T ss_conf 1024415884147899999987624864366-7631478999999886427712257
No 179
>pfam03309 Bvg_acc_factor Bordetella pertussis Bvg accessory factor family.
Probab=54.27 E-value=13 Score=15.76 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=17.8
Q ss_pred EEEEECCCCEEEEEEEECCEE
Q ss_conf 699804866069999989955
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNV 24 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~ 24 (652)
++-||.|||+.++++++++..
T Consensus 1 ~L~IDiGNT~iK~~l~~~~~~ 21 (206)
T pfam03309 1 LLLIDIGNTNIKWGLFDGDKL 21 (206)
T ss_pred CEEEEECCCEEEEEEEECCEE
T ss_conf 989997655069999989999
No 180
>pfam02347 GDC-P Glycine cleavage system P-protein. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is:- Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2
Probab=54.23 E-value=13 Score=15.76 Aligned_cols=73 Identities=27% Similarity=0.486 Sum_probs=40.6
Q ss_pred HHHHHHHHHHH------HHCC---------CCCEEEEEECCCCC---CCH---HHHHHHH--------HHHCCCCCC--C
Q ss_conf 99999999999------8388---------47336985377887---402---5788634--------421122222--2
Q gi|255764494|r 119 VLQKMKETAES------FLGE---------TVSKAVITVPAYFN---DAQ---RQATKDA--------GRIAGLDVL--R 167 (652)
Q Consensus 119 iL~~lk~~ae~------~l~~---------~v~~~VitVP~~f~---~~q---R~a~~~A--------a~~AGl~v~--~ 167 (652)
++++++.++.+ ++|. -|.+.++.-|.|+| +.| -|-+++| |++-|+++. .
T Consensus 52 ~~~~l~~la~kN~~~~sfiG~G~y~h~vP~vi~~~i~~r~efyTaYTPYQpEiSQG~LqalfefQtmi~eLTGmdvaNAS 131 (429)
T pfam02347 52 MLAELEAIASKNKIYKSFIGMGYYDTIIPAVILRNILENPEWYTQYTPYQPEISQGRLEALLNFQTMVCDLTGLDVANAS 131 (429)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999975897663157877797658156465404766430369998154437999999999999998588756876
Q ss_pred CCCCHHHHHH----HHHCCCCCCCEEEE
Q ss_conf 2210247888----86034456550799
Q gi|255764494|r 168 IINEPTAAAL----AYGLDKKDARTVIV 191 (652)
Q Consensus 168 li~EptAAal----~Y~~~~~~~~~vlV 191 (652)
+.++.||+|= +|.+.++....|+|
T Consensus 132 lyD~aTA~aEA~~ma~r~~k~~~~~vlv 159 (429)
T pfam02347 132 LLDEGTAAAEAMALAARISKGKKKKFVV 159 (429)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 6667889999999987651578877998
No 181
>PRK06840 hypothetical protein; Validated
Probab=53.98 E-value=6.1 Score=18.23 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=34.3
Q ss_pred HHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 000110011110101356311014663078530567788654101111111356
Q gi|255764494|r 308 IQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVN 361 (652)
Q Consensus 308 ~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~n 361 (652)
+.+....++++|+++|++++|||.+++.=.+.++ ++. +.+.+|.+..+.++
T Consensus 236 ~~~~~~~i~~~L~~~gl~~~DId~~~~hq~~~~~--~~~-~~~~lgi~~~k~~~ 286 (337)
T PRK06840 236 IPNFYKVIREALRKSGYTPKDIDYLAILHMKRSA--HIA-VLEGLGLTEEQTIY 286 (337)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHH--HHH-HHHHHCCCHHHEEE
T ss_conf 9889999999999849995786888885337999--999-99982997543486
No 182
>PRK05367 glycine dehydrogenase; Provisional
Probab=53.86 E-value=13 Score=15.72 Aligned_cols=59 Identities=29% Similarity=0.538 Sum_probs=33.0
Q ss_pred HHHHHHHHHH------HHHCC----C-----CCEEEEEECCCCC---CCH---HHHHHH--------HHHHCCCCC--CC
Q ss_conf 9999999999------98388----4-----7336985377887---402---578863--------442112222--22
Q gi|255764494|r 119 VLQKMKETAE------SFLGE----T-----VSKAVITVPAYFN---DAQ---RQATKD--------AGRIAGLDV--LR 167 (652)
Q Consensus 119 iL~~lk~~ae------~~l~~----~-----v~~~VitVP~~f~---~~q---R~a~~~--------Aa~~AGl~v--~~ 167 (652)
+|++|+++|. .++|. . |.+-|+.-|.||| +.| -|-.++ -+.+-|+++ ..
T Consensus 67 ~l~~l~~ia~kN~~~~sfIG~Gyy~t~~P~VI~Rnilenp~WYTaYTPYQpEiSQGrLeal~nfQtmi~dLTGm~vaNAS 146 (955)
T PRK05367 67 ALAELRAIASKNKVFRSYIGQGYYGTHTPPVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQTMVCDLTGLPIANAS 146 (955)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999973885301034776687575200204535888645779976577668999999999999998687600432
Q ss_pred CCCCHHHHHH
Q ss_conf 2210247888
Q gi|255764494|r 168 IINEPTAAAL 177 (652)
Q Consensus 168 li~EptAAal 177 (652)
|++|.||||=
T Consensus 147 llDeaTAaaE 156 (955)
T PRK05367 147 LLDEATAAAE 156 (955)
T ss_pred HHHHHHHHHH
T ss_conf 1018999999
No 183
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=53.64 E-value=13 Score=15.69 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=38.8
Q ss_pred HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf 001100111101013563110146630785305--6778865410111
Q gi|255764494|r 309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK 354 (652)
Q Consensus 309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~ 354 (652)
......++++|++|++++++|+.|..-|=+|.. |.=-+.|++.|+.
T Consensus 274 ~~~~~~~~~Al~~A~i~~~~i~yI~aHgtgT~~gD~~E~~Al~~~f~~ 321 (407)
T cd00828 274 KGIARAIRTALAKAGLSLDDLDVISAHGTSTPANDVAESRAIAEVAGA 321 (407)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 678999999999719995456389951676866699999999998621
No 184
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=53.59 E-value=10 Score=16.63 Aligned_cols=47 Identities=13% Similarity=0.221 Sum_probs=37.6
Q ss_pred HHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf 0001100111101013563110146630785305--6778865410111
Q gi|255764494|r 308 IQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK 354 (652)
Q Consensus 308 ~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~ 354 (652)
-......++++|++|++.+++|+.|..-|=+|.. |.=-+.|.+.||.
T Consensus 287 ~~~~~~~m~~Al~~agi~~~~i~yI~aHgtgT~~gD~~E~~al~~~fg~ 335 (424)
T PRK06333 287 GEGARRAMEGALRQAGIPPEQVQHLNAHATSTPVGDLGEVAAIKKVFGH 335 (424)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
T ss_conf 3677999999999849991451879952787866699999999998587
No 185
>TIGR01166 cbiO cobalt ABC transporter, ATP-binding protein; InterPro: IPR005876 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. This superfamily includes two groups, one which catalyses the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drives both the process of uptake and efflux.; GO: 0006824 cobalt ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=53.11 E-value=14 Score=15.63 Aligned_cols=111 Identities=18% Similarity=0.218 Sum_probs=55.9
Q ss_pred CCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHH
Q ss_conf 99899667898633308351100206754986872678765201986999759982799957958719999999999999
Q gi|255764494|r 45 EGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMK 124 (652)
Q Consensus 45 ~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk 124 (652)
.|..+++-.+.. +-+.-.....+-++.-|.||+=|-+.....- ++.|-.-+=-.+++||.+.+=.-|.
T Consensus 46 ~G~v~~dG~~l~----YsrkgL~~~R~~V~~VfQdPDDQlF~a~V~~--------DVaFGPlNLGL~e~Ev~~RV~eAL~ 113 (190)
T TIGR01166 46 SGKVLLDGEPLD----YSRKGLLEVRQRVGLVFQDPDDQLFAADVDQ--------DVAFGPLNLGLSEAEVERRVREALT 113 (190)
T ss_pred CCEEEECCEECC----CCCHHHHHHCCEEEEEEECHHHHCCCCCCCC--------CCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 555876785403----5724467525030037626344202676221--------0033545673371576787899998
Q ss_pred HHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC-CCCCCCCHHHH
Q ss_conf 9999983884733698537788740257886344211222-22222102478
Q gi|255764494|r 125 ETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLD-VLRIINEPTAA 175 (652)
Q Consensus 125 ~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~-v~~li~EptAA 175 (652)
..--..+.+..+++ |+.-||+.+--|+.+| ++ -+=+++||||-
T Consensus 114 ~vg~~~~~~rp~h~-------LS~GekkRvAIAGAvA-M~Pd~l~LDEPTAG 157 (190)
T TIGR01166 114 AVGISGLEERPTHL-------LSGGEKKRVAIAGAVA-MRPDVLLLDEPTAG 157 (190)
T ss_pred HCCHHHHHHCCHHH-------CCCCCHHHHHHHHHHH-HCCCEEEEECCCCC
T ss_conf 60632244122411-------5586135777775886-16634664278889
No 186
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=53.09 E-value=13 Score=15.65 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=16.3
Q ss_pred EEEEECCCCEEEEEEEECCE
Q ss_conf 69980486606999998995
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKN 23 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~ 23 (652)
.+|||+|-|+..+++++...
T Consensus 2 ylGiDIGGTki~~~l~d~~g 21 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENL 21 (256)
T ss_pred EEEEECCCHHEEEEEEECCC
T ss_conf 99999341011028996999
No 187
>PRK13321 pantothenate kinase; Reviewed
Probab=52.79 E-value=14 Score=15.60 Aligned_cols=21 Identities=38% Similarity=0.745 Sum_probs=18.2
Q ss_pred EEEEECCCCEEEEEEEECCEE
Q ss_conf 699804866069999989955
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNV 24 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~ 24 (652)
.+-||.|+|+.++++++++..
T Consensus 2 ~L~IDiGNT~ik~g~~~~~~~ 22 (256)
T PRK13321 2 LLCIDVGNTNIVLGIFDGDQL 22 (256)
T ss_pred EEEEEECCHHEEEEEEECCEE
T ss_conf 899998731519999989999
No 188
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=52.32 E-value=11 Score=16.44 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=31.3
Q ss_pred HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 001100111101013563110146630785305677886541011111
Q gi|255764494|r 309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSP 356 (652)
Q Consensus 309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~ 356 (652)
......|+++|++++++++|||.+++-=++-++ + +.+.+.+|.+.
T Consensus 230 ~~~~~~i~~~L~~~gl~~~DId~~i~HQ~n~~~--~-~~i~~~lgip~ 274 (329)
T PRK07204 230 KYLMKFIDKLLMDTGYSLADIDLIVPHQASGPA--M-RLIRKKLGVDE 274 (329)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEECCCHHH--H-HHHHHHCCCCH
T ss_conf 626999999998719997889989981488899--9-99999809697
No 189
>TIGR00461 gcvP glycine dehydrogenase; InterPro: IPR003437 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T . The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0006544 glycine metabolic process, 0005961 glycine dehydrogenase complex (decarboxylating).
Probab=52.23 E-value=5 Score=18.93 Aligned_cols=46 Identities=33% Similarity=0.564 Sum_probs=28.9
Q ss_pred EEECCCCC---CCH------H-HHHHH----HHHHCCCCC--CCCCCCHHHHH----HHHHCCCCC
Q ss_conf 85377887---402------5-78863----442112222--22221024788----886034456
Q gi|255764494|r 140 ITVPAYFN---DAQ------R-QATKD----AGRIAGLDV--LRIINEPTAAA----LAYGLDKKD 185 (652)
Q Consensus 140 itVP~~f~---~~q------R-~a~~~----Aa~~AGl~v--~~li~EptAAa----l~Y~~~~~~ 185 (652)
+==|.||| +.| | +|+++ ..-+.||++ -.|++|.|||| |+|++.|..
T Consensus 91 LEnPgWYTaYTPYQpEisQGRLEALLNFQtvv~DLTGL~~AnASLLDEgTAAaEAMals~~vSk~K 156 (965)
T TIGR00461 91 LENPGWYTAYTPYQPEISQGRLEALLNFQTVVLDLTGLEVANASLLDEGTAAAEAMALSFRVSKKK 156 (965)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 478784346788650132468999873444543002434654533217889999999987642222
No 190
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=52.22 E-value=6.8 Score=17.90 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=16.8
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-EECCCCCCC
Q ss_conf 7199999999999999999983884733698-537788740
Q gi|255764494|r 110 YSPSQISAIVLQKMKETAESFLGETVSKAVI-TVPAYFNDA 149 (652)
Q Consensus 110 ~~peei~a~iL~~lk~~ae~~l~~~v~~~Vi-tVP~~f~~~ 149 (652)
.+..++...-...-...|-- ....|+.+++ +.|..|...
T Consensus 23 ~s~~~L~~eA~~~Al~DAGl-~~~dID~~~~g~~~~~~~g~ 62 (391)
T PRK08313 23 VSMAGLVREAIDRALADAGL-TFDDIDAVVVGKAPDFFEGV 62 (391)
T ss_pred CCHHHHHHHHHHHHHHHCCC-CHHHCCEEEEECCCCCCCCC
T ss_conf 79999999999999997499-98998999997657645554
No 191
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=52.01 E-value=9.7 Score=16.71 Aligned_cols=46 Identities=28% Similarity=0.474 Sum_probs=36.3
Q ss_pred HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf 001100111101013563110146630785305--6778865410111
Q gi|255764494|r 309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK 354 (652)
Q Consensus 309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~ 354 (652)
......|+++|++|++++++|+.|+.-|=+|.. |.=-+.|++.|+.
T Consensus 275 ~~~~~~i~~al~~agi~~~~I~yIe~HgtGt~~gD~~E~~ai~~~f~~ 322 (406)
T cd00834 275 EGAARAMRAALADAGLSPEDIDYINAHGTSTPLNDAAESKAIKRVFGE 322 (406)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 999999999999858997445289970487867799999999998556
No 192
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=51.62 E-value=14 Score=15.47 Aligned_cols=46 Identities=24% Similarity=0.240 Sum_probs=26.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHCCCC---------CCCCCCCCCCHHHHHHHHCC
Q ss_conf 01466307853056778865410111---------11113565310111110002
Q gi|255764494|r 329 IDEVVLVGGMTRMPKIQQSVQDFFNK---------SPSKGVNPDEVVAMGAAIQA 374 (652)
Q Consensus 329 I~~V~lvGGssriP~v~~~i~~~fg~---------~~~~~~npdeaVa~GAA~~a 374 (652)
-+.|++=||-|..+.+.+.+.+.+.+ ++..+---+.|-.+|||+.+
T Consensus 246 Pe~iviGGGvs~~~~l~~~l~~~~~~~~~~~~~~~~I~~a~lG~~AGliGAA~L~ 300 (302)
T PRK13310 246 PHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (302)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf 8889997862570889999999999872674779848976746879999999863
No 193
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase); InterPro: IPR004654 This family describes one branch of the ROK superfamily of proteins that may have activity as glucokinase although many proteins are as yet uncharacterised.; GO: 0004340 glucokinase activity, 0006096 glycolysis, 0005737 cytoplasm.
Probab=50.92 E-value=12 Score=15.92 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=27.0
Q ss_pred CCCHHHHHHCCCCCCHH--CCCCCEEEEEEEECCCCCCH-HHHHHHHHHCCCC
Q ss_conf 42000011001111010--13563110146630785305-6778865410111
Q gi|255764494|r 305 NHLIQKTVEPCKKCLQD--AGLSPSDIDEVVLVGGMTRM-PKIQQSVQDFFNK 354 (652)
Q Consensus 305 ~~l~~~~~~~i~~~L~~--a~~~~~~I~~V~lvGGssri-P~v~~~i~~~fg~ 354 (652)
-+.++++-+-+--.|.+ +-+.|+ .++|=||-|+- -.|++.|++-|.+
T Consensus 236 ~~~~~~vA~~~g~~l~~las~~nPs---~ivlGGG~S~aG~ll~~~i~k~y~~ 285 (326)
T TIGR00744 236 VEVVEEVAKYLGLVLADLASLLNPS---KIVLGGGLSDAGELLLDKIKKEYKK 285 (326)
T ss_pred EHHHHHHHHHHHHHHHHHHHHCCCC---EEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 0358899999999987787523886---2787673262213556544443431
No 194
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=50.92 E-value=6.5 Score=18.05 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=24.0
Q ss_pred HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH-HHHHHHHH
Q ss_conf 001100111101013563110146630785305-67788654
Q gi|255764494|r 309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM-PKIQQSVQ 349 (652)
Q Consensus 309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri-P~v~~~i~ 349 (652)
......++++|++++++++|||.++.-=.+.|| ..+.+.+.
T Consensus 272 ~~~~~~~~~~L~~~gl~~~dId~~vpHQAn~ri~~~v~~~l~ 313 (378)
T PRK06816 272 VWGVDPYLELVDKRRLDPDAIDHFLPHYSSEYFREKIVELLA 313 (378)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEECCCCHHHHHHHHHHHHH
T ss_conf 999999999999849998998888126105999999999987
No 195
>KOG2411 consensus
Probab=50.91 E-value=6 Score=18.30 Aligned_cols=26 Identities=38% Similarity=0.523 Sum_probs=16.8
Q ss_pred EEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf 0146630785305--6778865410111
Q gi|255764494|r 329 IDEVVLVGGMTRM--PKIQQSVQDFFNK 354 (652)
Q Consensus 329 I~~V~lvGGssri--P~v~~~i~~~fg~ 354 (652)
+++|++=|||.|| |-+|+.+-+-..+
T Consensus 519 ~NGvElGGGSiRIhn~diQr~vLe~iLk 546 (628)
T KOG2411 519 VNGVELGGGSIRIHNPDIQRYVLEDILK 546 (628)
T ss_pred ECCEEECCCEEEECCHHHHHHHHHHHHC
T ss_conf 7147624734675288899999999855
No 196
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=50.64 E-value=9.3 Score=16.88 Aligned_cols=46 Identities=26% Similarity=0.323 Sum_probs=32.3
Q ss_pred HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 0011001111010135631101466307853056778865410111111
Q gi|255764494|r 309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPS 357 (652)
Q Consensus 309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~ 357 (652)
......++++|++++++++|||.+++-=|+- .+.+.+.+.+|.++.
T Consensus 223 ~~~~~~i~~~L~~~g~~~~did~~v~Hq~~~---~~~~~~~~~lgi~~~ 268 (320)
T cd00830 223 RLMPESIEEALEKAGLTPDDIDWFVPHQANL---RIIEAVAKRLGLPEE 268 (320)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEECCCH---HHHHHHHHHHCCCHH
T ss_conf 6569999999998599910165799706878---999999998096989
No 197
>PRK13318 pantothenate kinase; Reviewed
Probab=50.39 E-value=15 Score=15.33 Aligned_cols=21 Identities=33% Similarity=0.767 Sum_probs=18.1
Q ss_pred EEEEECCCCEEEEEEEECCEE
Q ss_conf 699804866069999989955
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNV 24 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~ 24 (652)
++-||.|+|+.++++++++..
T Consensus 2 ~L~IDiGNT~ik~~l~~~~~~ 22 (258)
T PRK13318 2 LLAIDVGNTNTVFGLFDGGKL 22 (258)
T ss_pred EEEEEECCCCEEEEEEECCEE
T ss_conf 899998887149999989999
No 198
>KOG2525 consensus
Probab=50.29 E-value=15 Score=15.32 Aligned_cols=130 Identities=25% Similarity=0.316 Sum_probs=68.5
Q ss_pred EEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 99957958719999999999999999998388473369853778874025788634421122222222102478888603
Q gi|255764494|r 102 WIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGL 181 (652)
Q Consensus 102 ~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~ 181 (652)
.|+++|+..|.| ..+.++-.+.+.-+....+ . ++-|.||- + =+.+|+.+
T Consensus 115 rIriNGqpIS~e-~F~~~f~~v~~~lk~~~~~----~-~~~p~yF~--------------------f-----LT~lAF~~ 163 (496)
T KOG2525 115 RIRINGQPISEE-KFTKYFWEVYERLKSTKLK----E-VSMPTYFE--------------------F-----LTLLAFHV 163 (496)
T ss_pred EEEECCEECCHH-HHHHHHHHHHHHHHHHHCC----C-CCCCCHHH--------------------H-----HHHHHHEE
T ss_conf 588899878999-9999999999988776306----5-67873555--------------------6-----67544201
Q ss_pred CCCCCCEEEEEEEC-CCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-----C---HHHHHH
Q ss_conf 44565507998724-41145431010231465420133224552134476655367876420134-----3---024478
Q gi|255764494|r 182 DKKDARTVIVFDFG-GGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGI-----D---LKQDTL 252 (652)
Q Consensus 182 ~~~~~~~vlV~D~G-ggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~-----d---~~~~~~ 252 (652)
+.+++--++|+-.| ||-+|.+=+ +.+.+. .|-+.||.++.. .|-+-+.+.-..|-|+ . ....+.
T Consensus 164 F~~enVdvaViEvGlGG~~DaTNv-I~kpvv-----cgITslG~DH~~-~LG~tL~eIA~eKAGIfK~gvpaft~~q~~e 236 (496)
T KOG2525 164 FVKENVDVAVIEVGLGGELDATNV-IEKPVV-----CGITSLGLDHTS-FLGNTLSEIAWEKAGIFKEGVPAFTVPQPPE 236 (496)
T ss_pred EEECCCCEEEEEECCCCCCCCCCC-CCCCEE-----EEEEECCCCHHH-HHHHHHHHHHHHHCCCCCCCCCEEECCCCHH
T ss_conf 555588689998435666566533-136458-----998405775288-8865899998874462405885487588578
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999999998854115
Q gi|255764494|r 253 ALQRLKEAAEKAKIELS 269 (652)
Q Consensus 253 a~~rL~~~~e~aK~~LS 269 (652)
++.-|...|+.....|.
T Consensus 237 ~~nvL~~ra~e~~~~L~ 253 (496)
T KOG2525 237 ALNVLKERASELGVPLF 253 (496)
T ss_pred HHHHHHHHHHHCCCCCE
T ss_conf 89999998873378835
No 199
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor; InterPro: IPR006529 These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs. The well-characterised members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (IPR006509 from INTERPRO). Members of this subfamily are found in plants, metazoa and fungi. ; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus.
Probab=50.16 E-value=15 Score=15.31 Aligned_cols=17 Identities=18% Similarity=0.593 Sum_probs=8.7
Q ss_pred EECCCCCCHHH------HHHHHHHCC
Q ss_conf 63078530567------788654101
Q gi|255764494|r 333 VLVGGMTRMPK------IQQSVQDFF 352 (652)
Q Consensus 333 ~lvGGssriP~------v~~~i~~~f 352 (652)
|.||| +|. |+++|+.|-
T Consensus 338 lyi~n---LP~~L~d~Qv~eLL~~FG 360 (577)
T TIGR01642 338 LYIGN---LPLYLKDDQVKELLESFG 360 (577)
T ss_pred EEECC---CCCCCCHHHHHHHHHCCC
T ss_conf 46627---876555178898540457
No 200
>TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family; InterPro: IPR011816 Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (IPR011813 from INTERPRO). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.; GO: 0008233 peptidase activity, 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic.
Probab=49.66 E-value=11 Score=16.25 Aligned_cols=43 Identities=26% Similarity=0.515 Sum_probs=31.9
Q ss_pred CEEECHHHHHHHHHHHH---------HHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 95871999999999999---------9999998388473369853778874025788634421122
Q gi|255764494|r 107 GKQYSPSQISAIVLQKM---------KETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGL 163 (652)
Q Consensus 107 ~~~~~peei~a~iL~~l---------k~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl 163 (652)
.+.||=.||+-++|+++ ...|+.|+|.++.+. |+ -+||-||||
T Consensus 93 E~~~sK~~ILE~YLN~iYfG~G~YG~~~AA~~YFgK~v~~L--tl------------~EaA~LAGl 144 (700)
T TIGR02074 93 EQKLSKDEILELYLNQIYFGNGAYGVEAAAQVYFGKSVNDL--TL------------AEAALLAGL 144 (700)
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHC--CH------------HHHHHHHHH
T ss_conf 53059579997630242116884158899976069776527--88------------899999986
No 201
>TIGR01129 secD protein-export membrane protein SecD; InterPro: IPR005791 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains . Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. This entry describes the SecD family of transport proteins. Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=49.57 E-value=15 Score=15.24 Aligned_cols=10 Identities=20% Similarity=0.587 Sum_probs=6.1
Q ss_pred CEEEEEECCC
Q ss_conf 3369853778
Q gi|255764494|r 136 SKAVITVPAY 145 (652)
Q Consensus 136 ~~~VitVP~~ 145 (652)
+++||-+|..
T Consensus 132 ~rI~VelPG~ 141 (522)
T TIGR01129 132 DRIVVELPGV 141 (522)
T ss_pred CEEEEEECCC
T ss_conf 4689984786
No 202
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=49.31 E-value=13 Score=15.75 Aligned_cols=46 Identities=26% Similarity=0.412 Sum_probs=36.0
Q ss_pred HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf 001100111101013563110146630785305--6778865410111
Q gi|255764494|r 309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK 354 (652)
Q Consensus 309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~ 354 (652)
......++++|+++++++++|+.|+.-|=+|.. +.=-+.|.+.|+.
T Consensus 276 ~g~~~a~~~al~~agi~~~~i~yIe~hgtgt~~~D~~E~~al~~~f~~ 323 (411)
T PRK07314 276 EGAARAMVAALKDAGINPEDIDYINAHGTSTPAGDKAETQAIKRVFGE 323 (411)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 567889999999858996332179973687877798899999998655
No 203
>PRK06364 consensus
Probab=49.21 E-value=7.8 Score=17.43 Aligned_cols=16 Identities=6% Similarity=0.310 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 6553678764201343
Q gi|255764494|r 231 LVEHICDTFKKENGID 246 (652)
Q Consensus 231 l~~~~~~~~~~~~~~d 246 (652)
++.+...++-.+|+..
T Consensus 151 ~~al~a~~y~~~~g~~ 166 (389)
T PRK06364 151 MAAIIARRYMHDFNVE 166 (389)
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999996969
No 204
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=49.07 E-value=7.1 Score=17.75 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=32.5
Q ss_pred CHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf 0000110011110101356311014663078530567788654101111
Q gi|255764494|r 307 LIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKS 355 (652)
Q Consensus 307 l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~ 355 (652)
-+..+...++++|+.++++++|||.+++-=.+-|| -+.+.+.+|.+
T Consensus 240 av~~vp~~i~~~L~~agl~~~DId~~v~HQAN~ri---ie~i~k~Lgl~ 285 (353)
T PRK12880 240 ALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYL---VDCIKEELKLN 285 (353)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHH---HHHHHHHCCCC
T ss_conf 99999999999999839997886568654688999---99999980989
No 205
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=49.02 E-value=11 Score=16.34 Aligned_cols=101 Identities=26% Similarity=0.340 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH---H-HHHC----CC
Q ss_conf 999999999999999998388-4733698537788740257886344211222222221024788---8-8603----44
Q gi|255764494|r 113 SQISAIVLQKMKETAESFLGE-TVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA---L-AYGL----DK 183 (652)
Q Consensus 113 eei~a~iL~~lk~~ae~~l~~-~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa---l-~Y~~----~~ 183 (652)
..+.+.-=...++.|+.+|.. -+.+-.=..|++.+.-|.|..--|-.+|==.-+-|.+|||.|. | .--+ +.
T Consensus 119 vhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~L 198 (256)
T COG4598 119 VHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDL 198 (256)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 67655778899999999999717154430386114741788899999873597668645984327989999999999999
Q ss_pred -CCCCEEEEE--EECCCEEEEE--EEEECCCEEEEE
Q ss_conf -565507998--7244114543--101023146542
Q gi|255764494|r 184 -KDARTVIVF--DFGGGTFDVS--LLEMGDGVFEVK 214 (652)
Q Consensus 184 -~~~~~vlV~--D~Gggt~dvs--i~~~~~~~~~vl 214 (652)
.+.++.+++ .||= .-||| |+-..+|.++.-
T Consensus 199 AeEgrTMv~VTHEM~F-AR~Vss~v~fLh~G~iEE~ 233 (256)
T COG4598 199 AEEGRTMVVVTHEMGF-ARDVSSHVIFLHQGKIEEE 233 (256)
T ss_pred HHHCCEEEEEEEEHHH-HHHHHHHEEEEECCEECCC
T ss_conf 9718748999620467-7753001687554440465
No 206
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=48.92 E-value=8.5 Score=17.14 Aligned_cols=60 Identities=20% Similarity=0.349 Sum_probs=38.4
Q ss_pred HHHCCCCCCHHCCCCCEEEEEEEECCCCC------CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 11001111010135631101466307853------056778865410111111135653101111100022
Q gi|255764494|r 311 TVEPCKKCLQDAGLSPSDIDEVVLVGGMT------RMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAG 375 (652)
Q Consensus 311 ~~~~i~~~L~~a~~~~~~I~~V~lvGGss------riP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~ 375 (652)
....++..+.-+.+.+++.|.|++.||-. .-+.++++++.+.... -|--||+.|.|....
T Consensus 73 ~~~~l~~~~~l~~v~~~~ydai~~pGG~g~m~dl~~~~~l~~l~~~~~~~g-----k~vaaiCHGp~~L~~ 138 (221)
T cd03141 73 FKKKLANTKKLSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENG-----KVVAAVCHGPAALLN 138 (221)
T ss_pred HHHHHHCCCCHHHCCHHHCCEEEECCCCCHHHHHHCCHHHHHHHHHHHHCC-----CEEEEECCHHHHHHH
T ss_conf 999885878967899878838998998545877441699999999999749-----859997630798875
No 207
>PRK08234 consensus
Probab=48.84 E-value=16 Score=15.16 Aligned_cols=65 Identities=23% Similarity=0.324 Sum_probs=34.1
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCC--CCCCHHHHHHHHH---HHCCCCCCCCCCCH
Q ss_conf 58719999999999999999998388473369853--778--8740257886344---21122222222102
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAY--FNDAQRQATKDAG---RIAGLDVLRIINEP 172 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~--f~~~qR~a~~~Aa---~~AGl~v~~li~Ep 172 (652)
+.++|++|.+..++.+.+..-..-...|+++++.+ |+. .....|++.+.|. ...++.+-|..-..
T Consensus 22 ~~~~~~~L~a~~i~~~l~r~~~~~~~~Id~vi~G~v~~~g~~~~n~aR~aaL~aGlp~~vpa~tVnr~C~SG 93 (400)
T PRK08234 22 RDVRPDDLAAVVIRALIERNPNVPVEQIDDVVFGNANQAGEDNRNVARMAALLAGLPVEVAGVTVNRLCGSG 93 (400)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCHHHHH
T ss_conf 889889999999999997468969899898999906765644466999999976999888616771530359
No 208
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=48.83 E-value=10 Score=16.53 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=7.8
Q ss_pred CCCCHHHHHHHHCCCC
Q ss_conf 6531011111000223
Q gi|255764494|r 361 NPDEVVAMGAAIQAGV 376 (652)
Q Consensus 361 npdeaVa~GAA~~a~~ 376 (652)
|.+..-.+|+|++=|+
T Consensus 500 ~ts~~y~RggalfFa~ 515 (1466)
T TIGR00956 500 NTSDFYSRGGALFFAI 515 (1466)
T ss_pred CCCCEEEHHHHHHHHH
T ss_conf 4343020599999999
No 209
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=48.64 E-value=16 Score=15.14 Aligned_cols=49 Identities=22% Similarity=0.292 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 99999999998388473369853778874025788634421122222222102478
Q gi|255764494|r 120 LQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 120 L~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
+..+++..+. .+ ++-.||-||++| ...|.++|.. ||++.+-.|.|-.-.
T Consensus 69 f~tV~eAv~~-~~--~d~SvIfVPp~~---a~dAilEAi~-agI~liV~ITEgIP~ 117 (309)
T PTZ00187 69 FGTVAEAKKA-TG--ADASVIYVPPPH---AAAAIIEAIE-AEIPLVVVITEGIPQ 117 (309)
T ss_pred CCCHHHHHHH-HC--CCEEEEECCCCC---CHHHHHHHHH-CCCCEEEEECCCCCH
T ss_conf 6659999985-68--987999626411---1889999997-799879993389888
No 210
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=48.59 E-value=7 Score=17.82 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=28.5
Q ss_pred HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf 00110011110101356311014663078530567788654101111
Q gi|255764494|r 309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKS 355 (652)
Q Consensus 309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~ 355 (652)
....+.++++|++++++++|||.+++-=.+.++ .+.+.+.+|.+
T Consensus 240 ~~~~~~~~~~L~~~gl~~~dId~~v~HQan~~~---~~~i~~~Lgi~ 283 (339)
T PRK09258 240 ELAVDTWEAFLQQLGWSVEQVDKVVCHQVGAAH---TRAVLKALGID 283 (339)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHH---HHHHHHHCCCC
T ss_conf 999999999999839998998899862576999---99999981968
No 211
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.47 E-value=12 Score=16.03 Aligned_cols=49 Identities=24% Similarity=0.356 Sum_probs=38.5
Q ss_pred CHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHH--HHHHHCCCCC
Q ss_conf 000011001111010135631101466307853056778--8654101111
Q gi|255764494|r 307 LIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQ--QSVQDFFNKS 355 (652)
Q Consensus 307 l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~--~~i~~~fg~~ 355 (652)
.-+.....++.+|+++++++++|+.|-.-|=||..--.. ..|+.+||..
T Consensus 274 ~g~Ga~~am~~AL~~Agl~~~~idYinaHgTsT~~nD~~E~~Ai~~vfg~~ 324 (412)
T COG0304 274 DGEGAIRAMRAALADAGLTPEDIDYINAHGTSTPANDKAESLAIKRVFGEH 324 (412)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHCCEEECCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 875699999999998499976799894787668776599999999984225
No 212
>PRK09557 fructokinase; Reviewed
Probab=48.33 E-value=16 Score=15.11 Aligned_cols=20 Identities=45% Similarity=0.581 Sum_probs=16.8
Q ss_pred EEEECCCCEEEEEEEECCEE
Q ss_conf 99804866069999989955
Q gi|255764494|r 5 IGIDLGTTNSCVAIMDGKNV 24 (652)
Q Consensus 5 iGIDlGtt~s~va~~~~~~~ 24 (652)
||||+|-|+..+++++..+-
T Consensus 3 iGiDIGGT~i~~~lvd~~G~ 22 (301)
T PRK09557 3 IGIDLGGTKIEVIALDDAGE 22 (301)
T ss_pred EEEEECCCEEEEEEEECCCC
T ss_conf 99998732099999979997
No 213
>pfam00885 DMRL_synthase 6,7-dimethyl-8-ribityllumazine synthase. This family includes the beta chain of 6,7-dimethyl-8- ribityllumazine synthase EC:2.5.1.9, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function.
Probab=48.20 E-value=5.5 Score=18.59 Aligned_cols=73 Identities=30% Similarity=0.479 Sum_probs=46.4
Q ss_pred EEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 68731100001234200001100111101013563110146630785305677886541011111113565310111110
Q gi|255764494|r 292 NMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAA 371 (652)
Q Consensus 292 ~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA 371 (652)
++-|=...|.+ ++.++..+-..+.|.+.|.+.++|+ ++-|=|+--+|..-+.+-+ +-+.|-.||.||-
T Consensus 5 kI~IV~s~~n~---~i~~~l~~~a~~~l~~~g~~~~~i~-~~~VPGa~EiP~~~~~l~~--------~~~~d~iIalG~V 72 (144)
T pfam00885 5 RIAIVVARFNA---DITDRLLEGALDALKRHGVSEEDID-VVRVPGAFELPLAAKKLAK--------SGRYDAVVALGAV 72 (144)
T ss_pred EEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCHHHEE-EEECCCHHHHHHHHHHHHH--------CCCCCEEEEEEEE
T ss_conf 89999803759---9999999999999998699931058-9987968899999999986--------4898879999999
Q ss_pred HCCCC
Q ss_conf 00223
Q gi|255764494|r 372 IQAGV 376 (652)
Q Consensus 372 ~~a~~ 376 (652)
+.+..
T Consensus 73 IkGeT 77 (144)
T pfam00885 73 IRGGT 77 (144)
T ss_pred EECCC
T ss_conf 83798
No 214
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=47.92 E-value=7.5 Score=17.59 Aligned_cols=48 Identities=25% Similarity=0.402 Sum_probs=36.3
Q ss_pred HHHHHHCCCCCCHHCCCCCEEEEEEEECCCC-CCHHHHHHHHHHCCCCC
Q ss_conf 0001100111101013563110146630785-30567788654101111
Q gi|255764494|r 308 IQKTVEPCKKCLQDAGLSPSDIDEVVLVGGM-TRMPKIQQSVQDFFNKS 355 (652)
Q Consensus 308 ~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGs-sriP~v~~~i~~~fg~~ 355 (652)
.+-..+..+++|+++|++++|||.|+.+=-+ ...|.+--.|.+.+|-.
T Consensus 86 ~~la~~Aa~~AL~~ag~~~~dId~lI~~Tst~~~~Ps~a~~v~~~LGl~ 134 (361)
T cd00831 86 RELAEEAARGALDEAGLRPSDIDHLVVNTSTGNPTPSLDAMLINRLGLR 134 (361)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999819898999999998659999897699999973899
No 215
>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family. Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to pfam01844, HNH endonuclease.
Probab=47.70 E-value=16 Score=15.04 Aligned_cols=55 Identities=25% Similarity=0.304 Sum_probs=32.8
Q ss_pred EEEECCCCEEEEEEEE--CC-EEEEEECCCCCCCCCEEEEEECCCCE--EECHHHHHHHHHCCCH
Q ss_conf 9980486606999998--99-55997568986256279999489989--9667898633308351
Q gi|255764494|r 5 IGIDLGTTNSCVAIMD--GK-NVRVIENAEGTRTTPSMVGFTDEGER--LVGQPAKRQAVTNPSN 64 (652)
Q Consensus 5 iGIDlGtt~s~va~~~--~~-~~~ii~n~~g~r~~PS~V~~~~~~~~--~vG~~A~~~~~~~p~~ 64 (652)
||||||-.|+.|+.+. .| ..+-+.|..+ +++-+..++-. ..|..|+++..|+..+
T Consensus 2 I~IDLg~KnTGvfs~~~~~~a~l~~ldn~~~-----~v~~~d~~s~~lsq~~Rra~RH~~R~~~R 61 (802)
T TIGR03031 2 IGIDLGGKNTGVFSSHLEAFAELPNLDNTKY-----SVILIDHNSFQLSQAQRRATRHRVRNKKR 61 (802)
T ss_pred CEEECCCCCCEEEHHHHHHCCCCCCCCCCCC-----CEEEEECCCEEEHHCCHHHHHHHHHHHHH
T ss_conf 4341377521212677751266743123456-----55997177553121100456788622378
No 216
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=47.57 E-value=7.7 Score=17.48 Aligned_cols=40 Identities=20% Similarity=0.499 Sum_probs=29.1
Q ss_pred HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 001100111101013563110146630785305677886541011
Q gi|255764494|r 309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN 353 (652)
Q Consensus 309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg 353 (652)
+-..+..+++|+..+. +.++++||-+.--.+|+++++...
T Consensus 247 ~~L~~kt~rAl~~~~~-----~~lvi~GGVaaN~~LR~~l~~~~~ 286 (342)
T COG0533 247 DMLVEKTERALKHTGK-----KELVIAGGVAANSRLREMLEEMCK 286 (342)
T ss_pred HHHHHHHHHHHHHHCC-----CEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 9999999999998099-----989993558775999999999887
No 217
>PRK13319 consensus
Probab=47.47 E-value=16 Score=15.01 Aligned_cols=21 Identities=29% Similarity=0.697 Sum_probs=18.1
Q ss_pred EEEEECCCCEEEEEEEECCEE
Q ss_conf 699804866069999989955
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNV 24 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~ 24 (652)
++-||.|+|+.++++++++..
T Consensus 2 ~L~iDIGNT~ik~gl~~~~~l 22 (258)
T PRK13319 2 ILVLDVGNTNIVLGVYEGKEL 22 (258)
T ss_pred EEEEEECCCCEEEEEEECCEE
T ss_conf 899998744169999989999
No 218
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A; InterPro: IPR013483 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . This entry represents the bacterial form of MoaA (molybdenum cofactor biosynthesis protein A). The MoaA protein is a member of the wider S-adenosylmethionine(SAM)-dependent enzyme family which catalyze the formation of protein and/or substrate radicals by reductive cleavage of SAM via a [4Fe-4S] cluster. Monomeric and homodimeric forms of MoaA have been observed in vivo, and it is not clear what the physiologically relevant form of the enzyme is . The core of each monomer consists of an incomplete TIM barrel, formed by the N-terminal region of the protein, containing a [4Fe-4S] cluster. The C-terminal region of the protein, which also contains a [4Fe-4S] cluster consists of a beta-sheet covering the lateral opening of the barrel, an extended loop and three alpha helices. The N-terminal [4Fe-4S] cluster is coordinated with 3 cysteines and an exchangeable SAM molecule, while the C-terminal [4Fe-4S], also coordinated with 3 cysteines, is the binding and activation site for GTP .; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=47.38 E-value=16 Score=15.00 Aligned_cols=104 Identities=24% Similarity=0.374 Sum_probs=64.9
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 314654201332245521344766553678764201-----343024478999999999988541155650358630443
Q gi|255764494|r 208 DGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKEN-----GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFIS 282 (652)
Q Consensus 208 ~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~-----~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~ 282 (652)
-|+=+|.=|+|.+-| =.|++..+ ..+.+.. .+-+++|-. .|.+.|..+|++ .-+..+|++++
T Consensus 61 ~Gv~KvRlTGGEPLl-R~~l~~lv-----~~~~~~~g~~~~di~lTTNG~---~L~~~a~~L~eA--GL~rvNvSLDs-- 127 (346)
T TIGR02666 61 LGVRKVRLTGGEPLL-RKDLVELV-----ARLAALPGIEIEDIALTTNGL---LLERHAKDLKEA--GLKRVNVSLDS-- 127 (346)
T ss_pred CCCEEEEEECCCCCC-CCCHHHHH-----HHHHHCCCCCCCEEEECCCHH---HHHHHHHHHHHC--CCCCEEEEEEC--
T ss_conf 497168752777441-36758999-----999842785433554100522---358899999971--88803654014--
Q ss_pred CCCCCCCEEEEEECCCCCCCCC-CC-CHHHHHHCCCCCCHHCCCCCEEEEEEEECCC
Q ss_conf 4678872126873110000123-42-0000110011110101356311014663078
Q gi|255764494|r 283 ANSAGAQHLNMKLTRAQFERLV-NH-LIQKTVEPCKKCLQDAGLSPSDIDEVVLVGG 337 (652)
Q Consensus 283 ~~~~~g~d~~~~itR~~fe~l~-~~-l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGG 337 (652)
+.++.|.++. .. -++++++-|+.|++ +|+.+=-|+.|++=|=
T Consensus 128 ------------Ld~~~F~~It~~~~~l~~Vl~Gi~aA~~-~Gl~~vKlN~V~~~G~ 171 (346)
T TIGR02666 128 ------------LDPERFAKITRRGGRLEQVLAGIDAALE-AGLKPVKLNTVVLRGV 171 (346)
T ss_pred ------------CCHHHHHHHHCCCCCHHHHHHHHHHHHH-CCCCCEEEEEEECCCC
T ss_conf ------------8889999985789988899999999996-5998314766762788
No 219
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=47.24 E-value=12 Score=16.05 Aligned_cols=130 Identities=22% Similarity=0.348 Sum_probs=60.9
Q ss_pred EECCEEEEEECCC--CCCCCCEEEEE---ECCCCE-EECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCEE
Q ss_conf 9899559975689--86256279999---489989-96678986333083511002067549868726787652019869
Q gi|255764494|r 19 MDGKNVRVIENAE--GTRTTPSMVGF---TDEGER-LVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTVAKDASLVPFK 92 (652)
Q Consensus 19 ~~~~~~~ii~n~~--g~r~~PS~V~~---~~~~~~-~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~ 92 (652)
+.+|.+.|+.-+. ||.+.=|.++= ..+|.. ++|.+=. .-..+....+.|-||-=|.... .+.|
T Consensus 28 i~~GEiViltGPSGSGKTTLLtLiG~LR~~Q~G~L~vlg~~L~----ga~~~~l~~~RR~iGyIFQ~HN------Ll~~- 96 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELK----GASKKELVQVRRNIGYIFQAHN------LLGF- 96 (220)
T ss_pred ECCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHC----CCCHHHHHHHHHHCCCEECCCH------HCHH-
T ss_conf 7176479843788984688999887625655560478220102----6788899999876391441200------0100-
Q ss_pred EEECCCCEEEEEECCEEECHHH---HHHHHH-----HHHHHHHHHHHCC-CCCEEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9975998279995795871999---999999-----9999999998388-473369853778874025788634421122
Q gi|255764494|r 93 IVEGKGGDAWIEAQGKQYSPSQ---ISAIVL-----QKMKETAESFLGE-TVSKAVITVPAYFNDAQRQATKDAGRIAGL 163 (652)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~pee---i~a~iL-----~~lk~~ae~~l~~-~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl 163 (652)
+|+.| +...+- ...+..|+..|.. -..+=+=-.|..-+.-|||.+-=|=.+..=
T Consensus 97 -----------------LTA~QNVqM~~eL~~~~~~~~~~~~a~~~L~~VGL~~~~~y~P~~LSGGQKQRVAIARALv~~ 159 (220)
T TIGR02982 97 -----------------LTARQNVQMALELQPNLSAQEAREKARAMLEAVGLGDRLDYYPENLSGGQKQRVAIARALVAR 159 (220)
T ss_pred -----------------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCHHHHHHHHHHHCC
T ss_conf -----------------017788864898876116889999999999860601255405243678616899999997338
Q ss_pred CCCCCCCCHHHHH
Q ss_conf 2222221024788
Q gi|255764494|r 164 DVLRIINEPTAAA 176 (652)
Q Consensus 164 ~v~~li~EptAAa 176 (652)
+-+=|=+|||||-
T Consensus 160 P~LvLADEPTAAL 172 (220)
T TIGR02982 160 PKLVLADEPTAAL 172 (220)
T ss_pred CCEEECCCCCHHH
T ss_conf 9767625772332
No 220
>pfam08904 DUF1849 Domain of unknown function (DUF1849). This family of proteins are functionally uncharacterized.
Probab=47.14 E-value=13 Score=15.85 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=16.0
Q ss_pred CCCCCCCCHHHHCCCCHHHH
Q ss_conf 44353200001001100122
Q gi|255764494|r 461 PKGTPQIEVAFDIDANGIVQ 480 (652)
Q Consensus 461 ~~G~~~I~vtf~id~nGil~ 480 (652)
+.+.|..+++|++..||+..
T Consensus 209 ~~~~P~Yeis~~l~eNGV~~ 228 (252)
T pfam08904 209 GDGLPVYRMSFKLYENGVSR 228 (252)
T ss_pred CCCCCCEEEEEEECCCCCEE
T ss_conf 88897289999992788507
No 221
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=46.91 E-value=8 Score=17.38 Aligned_cols=36 Identities=31% Similarity=0.304 Sum_probs=29.2
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|...+--|||.+--|+.+|-=.-+=+++|||++-
T Consensus 136 ~~P~~LSGGqrQRvaIA~aLa~~P~ililDEPTs~L 171 (277)
T PRK13642 136 REPARLSGGQKQRVAVAGIIALRPEIIILDESTSML 171 (277)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 791228999999999999996699999995887658
No 222
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=46.03 E-value=10 Score=16.46 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=7.2
Q ss_pred EEECCCCCCHHHHHHHH
Q ss_conf 66307853056778865
Q gi|255764494|r 332 VVLVGGMTRMPKIQQSV 348 (652)
Q Consensus 332 V~lvGGssriP~v~~~i 348 (652)
+.|-||+|-+|..+.+.
T Consensus 27 l~lsGGstp~~~y~~L~ 43 (219)
T cd01400 27 LALSGGSTPKPLYELLA 43 (219)
T ss_pred EEECCCCCHHHHHHHHH
T ss_conf 99848977999999985
No 223
>TIGR03150 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2. FabB sequences should fall well below the noise cutoff of this model.
Probab=45.90 E-value=15 Score=15.37 Aligned_cols=45 Identities=22% Similarity=0.446 Sum_probs=34.4
Q ss_pred HHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf 01100111101013563110146630785305--6778865410111
Q gi|255764494|r 310 KTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK 354 (652)
Q Consensus 310 ~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~ 354 (652)
.....++++|+++++++++|+.|+.-|=+|.. |.=-+.|++.||.
T Consensus 276 ~~~~~i~~al~~agi~~~~I~yIe~Hgtgt~~~D~~E~~al~~~fg~ 322 (407)
T TIGR03150 276 GAARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRVFGD 322 (407)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 78889999999868998633499973687877699999999998625
No 224
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=45.75 E-value=8.9 Score=17.00 Aligned_cols=50 Identities=16% Similarity=0.347 Sum_probs=36.7
Q ss_pred CCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCC--CHHHHHHHHHHCCCCC
Q ss_conf 2000011001111010135631101466307853--0567788654101111
Q gi|255764494|r 306 HLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMT--RMPKIQQSVQDFFNKS 355 (652)
Q Consensus 306 ~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGss--riP~v~~~i~~~fg~~ 355 (652)
+..+-.....+++|+++++++++||.|+.+.-+. ..|..--.|.+.+|..
T Consensus 47 ~~~~ma~~Aa~~aL~~a~~~~~~Idlli~~s~~~~~~~p~~a~~i~~~Lgl~ 98 (324)
T cd00827 47 DVPTMAVEAARRALERAGIDPDDIGLLIVATESPIDKGKSAATYLAELLGLT 98 (324)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999998498988997999932577867974999999985899
No 225
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=45.40 E-value=8.6 Score=17.13 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=28.5
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
--|...+--|||.+--|..+|-=.-+-+++|||++-
T Consensus 133 r~p~~LSGGQrQRvaIA~aLa~~P~lLilDEPTs~L 168 (276)
T PRK13650 133 REPARLSGGQKQRVAIAGAVAMRPKIIILDEATSML 168 (276)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 890338999999999999997399999983886658
No 226
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=45.27 E-value=18 Score=14.78 Aligned_cols=61 Identities=20% Similarity=0.163 Sum_probs=40.1
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC-EEEEEEECCCEEEE
Q ss_conf 369853778874025788634421122222222102478888603445655-07998724411454
Q gi|255764494|r 137 KAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDAR-TVIVFDFGGGTFDV 201 (652)
Q Consensus 137 ~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~-~vlV~D~Gggt~dv 201 (652)
+.|.++|..+. ..+.+|..-.|+..+..-||-.|+..|-|.-+...+ -+++.-.|-|.+..
T Consensus 32 ~~vFGvpG~~~----~~l~dal~~~~i~~V~~rhE~~A~~mAdgYaR~tg~pgv~~~t~GpG~~N~ 93 (571)
T PRK07710 32 EVIFGYPGGAV----LPLYDALYDCGIPHILTRHEQGAIHAAEGYARITGNPGVVIATSGPGATNV 93 (571)
T ss_pred CEEEECCCCCH----HHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 99998477148----999999986699399338789999999999999799889998167289999
No 227
>PRK03011 butyrate kinase; Provisional
Probab=45.13 E-value=12 Score=15.98 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=33.7
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHH
Q ss_conf 101466307853056778865410111----11113565310111110
Q gi|255764494|r 328 DIDEVVLVGGMTRMPKIQQSVQDFFNK----SPSKGVNPDEVVAMGAA 371 (652)
Q Consensus 328 ~I~~V~lvGGssriP~v~~~i~~~fg~----~~~~~~npdeaVa~GAA 371 (652)
.||.++++||-..-..+.+.|.+..+- .+...-|-.||.|.||-
T Consensus 296 ~vDaiVFTGGIgen~~l~~~i~~~~~~lapv~v~pg~~Em~ala~gal 343 (356)
T PRK03011 296 KVDAIVLTGGLAYSKRLVDWIKERVSWIAPVVVYPGEDEMEALAEGAL 343 (356)
T ss_pred CCCEEEECCCHHCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 678899888510499999999986160200797388499999998699
No 228
>PRK06059 lipid-transfer protein; Provisional
Probab=44.84 E-value=13 Score=15.83 Aligned_cols=15 Identities=7% Similarity=-0.031 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 553678764201343
Q gi|255764494|r 232 VEHICDTFKKENGID 246 (652)
Q Consensus 232 ~~~~~~~~~~~~~~d 246 (652)
+-.+...+-.+|+..
T Consensus 147 ~Al~a~rym~~yG~t 161 (399)
T PRK06059 147 FALLARRRMDLYGAT 161 (399)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999997979
No 229
>TIGR01935 NOT-MenG RraA family; InterPro: IPR010203 This entry includes a number of closely related sequences bacteria and plants. The Escherichia coli member of this family has been characterised as a regulator of RNase E (see IPR004659 from INTERPRO), and its crystal structure has been analysed . E. coli RraA acts as a trans-acting modulator of RNA turnover, binding essential endonuclease RNase E and inhibiting RNA processing . RNase E forms the core of a large RNA-catalysis machine termed the degradosomes. RraA (and RraB) causes remodelling of degradosome composition, which is associated with alterations in RNA decay and global transcript abundance and as such is a bacterial mechanism for the regulation of RNA cleavage .; GO: 0008428 ribonuclease inhibitor activity, 0051252 regulation of RNA metabolic process.
Probab=44.47 E-value=11 Score=16.31 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=8.2
Q ss_pred EEEEC--CCCCCHHHHHHHHH
Q ss_conf 46630--78530567788654
Q gi|255764494|r 331 EVVLV--GGMTRMPKIQQSVQ 349 (652)
Q Consensus 331 ~V~lv--GGssriP~v~~~i~ 349 (652)
.|++| |||.|-=+|=..|.
T Consensus 60 rVLVVDGgGSlr~ALlGd~lA 80 (155)
T TIGR01935 60 RVLVVDGGGSLRRALLGDNLA 80 (155)
T ss_pred CEEEEECCCHHHHHCCCCHHH
T ss_conf 279995885010210167567
No 230
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=44.25 E-value=13 Score=15.72 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=35.1
Q ss_pred HHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf 1100111101013563110146630785305--6778865410111
Q gi|255764494|r 311 TVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK 354 (652)
Q Consensus 311 ~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~ 354 (652)
....++.+|+++++++++|+.|..-|=+|.. |.=-+.|++.||.
T Consensus 280 ~~~~m~~al~~agi~~~~I~yI~aHGTgT~~gD~~E~~ai~~~fg~ 325 (414)
T PRK08722 280 GALAMEAAMRDAGITGEQIGYVNAHGTSTPAGDVAEIKGIKRALGE 325 (414)
T ss_pred HHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 9999999998749998788669863587877599999999999663
No 231
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=44.21 E-value=9.4 Score=16.82 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=29.5
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 98537788740257886344211222222221024788
Q gi|255764494|r 139 VITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 139 VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.=.-|...+--|||.+--|+.+|-=.-+-+++||||+-
T Consensus 138 ~~~~p~~LSGGqkQRvaiA~aLa~~P~iLllDEPTs~L 175 (283)
T PRK13640 138 IDSEPANLSGGQKQRVAIAGILAVEPQIIILDESTSML 175 (283)
T ss_pred HHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 64792229999999999999997199999976874548
No 232
>PRK06289 acetyl-CoA acetyltransferase; Provisional
Probab=43.38 E-value=7.2 Score=17.72 Aligned_cols=16 Identities=19% Similarity=0.673 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 6553678764201343
Q gi|255764494|r 231 LVEHICDTFKKENGID 246 (652)
Q Consensus 231 l~~~~~~~~~~~~~~d 246 (652)
++.....+|-.+|+.+
T Consensus 152 ~~a~~A~~y~~~yg~t 167 (408)
T PRK06289 152 MFGKVADEYDRRYGLD 167 (408)
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999996989
No 233
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=43.11 E-value=19 Score=14.54 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=40.6
Q ss_pred CCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHH-------HHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 9869997599827999579587199999999999999999-------983884733698537788740257886344211
Q gi|255764494|r 89 VPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAE-------SFLGETVSKAVITVPAYFNDAQRQATKDAGRIA 161 (652)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae-------~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~A 161 (652)
++|++....+..-.|.+.. .-+.+++.+.+.++|....+ .|+-.+=..+.||.-... ..-.+-|+.+
T Consensus 1 F~FK~~~~~GR~HRf~~~~-s~~~~~L~~~V~~rLg~d~~~~~~~~L~Y~DDEgD~VliTsD~DL-----~eaV~~aR~~ 74 (86)
T cd06409 1 FAFKFKDPKGRVHRFRLRP-SESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLITSDSDL-----VAAVLVARSA 74 (86)
T ss_pred CCEEECCCCCCEEEEEECC-CCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECHHH-----HHHHHHHHHC
T ss_conf 9513027899806798657-689999999999984885001676127887489998999403669-----9999999984
Q ss_pred CCCCCCC-CCCH
Q ss_conf 2222222-2102
Q gi|255764494|r 162 GLDVLRI-INEP 172 (652)
Q Consensus 162 Gl~v~~l-i~Ep 172 (652)
|.+.++| |+.|
T Consensus 75 g~~~v~L~vh~p 86 (86)
T cd06409 75 GLKKLDLHLHYP 86 (86)
T ss_pred CCCEEEEEECCC
T ss_conf 997689983288
No 234
>PRK09605 O-sialoglycoprotein endopeptidase/protein kinase; Reviewed
Probab=42.84 E-value=7.9 Score=17.38 Aligned_cols=132 Identities=21% Similarity=0.411 Sum_probs=67.2
Q ss_pred EEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 79987244114543101023146542013322455213447665536787642013430244789999999999885411
Q gi|255764494|r 189 VIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIEL 268 (652)
Q Consensus 189 vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~L 268 (652)
++.+ +-||++. |+.+.++.+++++..-|.-+ |+-||.. + +.-++....-+ ...+| |.+-+.
T Consensus 127 l~L~-VSGGhTq--ii~~~~g~y~ilGeTlDdA~-GeafDK~-----A----R~lgL~~PGGp-~Ie~l---A~~G~~-- 187 (536)
T PRK09605 127 VTLY-VSGGNTQ--VLAYLNGRYRVFGETLDIGI-GNALDKF-----A----RHAGLPHPGGP-KIEKL---AKDGSK-- 187 (536)
T ss_pred CEEE-EECCCEE--EEEECCCEEEEECCCCCHHH-HHHHHHH-----H----HHCCCCCCCCH-HHHHH---HHHCCC--
T ss_conf 5699-9768648--99984873798333143677-8989999-----9----98199999978-99999---971886--
Q ss_pred CCCCEEEEEECCCCCCCCCCCEEEEE---------EC-CCCCCCCCCCCHHHHH----HCCCCCCHHCCCCCEEEEEEEE
Q ss_conf 55650358630443467887212687---------31-1000012342000011----0011110101356311014663
Q gi|255764494|r 269 SSTSQTEINLPFISANSAGAQHLNMK---------LT-RAQFERLVNHLIQKTV----EPCKKCLQDAGLSPSDIDEVVL 334 (652)
Q Consensus 269 S~~~~~~i~i~~~~~~~~~g~d~~~~---------it-R~~fe~l~~~l~~~~~----~~i~~~L~~a~~~~~~I~~V~l 334 (652)
.+.+|... .|.||+++ +. ....+.+|..+-+.+. +..++||...+ .+.+++
T Consensus 188 ------~~~lP~~~----kg~DfSFSGLkTa~~~~~~~~~~~~DicaSfQe~i~~~L~e~t~rAl~~~~-----~~~lvv 252 (536)
T PRK09605 188 ------YIELPYVV----KGMDLSFSGLLTAAKEAYDKGEPLEDVCYSLQETAFAMLVEVTERALAHTG-----KDEVLL 252 (536)
T ss_pred ------CCCCCCCC----CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCEEEE
T ss_conf ------68588757----897566177889999999859988999999999999999999999999749-----397999
Q ss_pred CCCCCCHHHHHHHHHHCCCC
Q ss_conf 07853056778865410111
Q gi|255764494|r 335 VGGMTRMPKIQQSVQDFFNK 354 (652)
Q Consensus 335 vGGssriP~v~~~i~~~fg~ 354 (652)
+||-+.-..+|++++.+...
T Consensus 253 ~GGVaaN~~LR~~l~~~~~~ 272 (536)
T PRK09605 253 VGGVAANNRLREMLNVMCEE 272 (536)
T ss_pred ECCHHHHHHHHHHHHHHHHH
T ss_conf 75788739999999999998
No 235
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=42.76 E-value=11 Score=16.24 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=27.7
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-|-..+--|||.+--|+.+|.=.-+-+++||||+-
T Consensus 142 ~p~~LSGGqkQRvaiA~aLa~~P~iLilDEPTs~L 176 (281)
T PRK13633 142 APHLLSGGQKQRVAIAGILAMRPECIIFDEPTAML 176 (281)
T ss_pred CCHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 91008985999999999998599999981873438
No 236
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=42.72 E-value=19 Score=14.50 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999989
Q gi|255764494|r 508 EKMVKDAEMNA 518 (652)
Q Consensus 508 ~~~~~eae~~~ 518 (652)
++++++|+..+
T Consensus 41 ~~Ii~~Ae~eA 51 (208)
T PRK01005 41 KRIIEEAQEEA 51 (208)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 237
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=42.66 E-value=10 Score=16.62 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=28.3
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-|...+--|||.+--|+.+|-=.-+=+++||||+-
T Consensus 134 ~p~~LSGGqkqRVaiA~aLa~~P~iliLDEPTagL 168 (275)
T PRK13639 134 PPHHLSGGQKKRVAIAGILAMNPEIMVLDEPTSGL 168 (275)
T ss_pred CHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 94449999999999988873699899977975548
No 238
>pfam08541 ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal. This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EC:2.3.1.41, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria.
Probab=42.53 E-value=13 Score=15.68 Aligned_cols=35 Identities=37% Similarity=0.526 Sum_probs=19.2
Q ss_pred CHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 01013563110146630785305677886541011111
Q gi|255764494|r 319 LQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSP 356 (652)
Q Consensus 319 L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~ 356 (652)
|+++|++++|||.+++--++-++ + +.+.+.+|.++
T Consensus 1 L~~~g~~~~dId~~i~Hq~~~~~--~-~~i~~~lgi~~ 35 (90)
T pfam08541 1 LEKAGLTPDDIDWFVPHQANLRI--I-DAVAKRLGLPP 35 (90)
T ss_pred CCCCCCCHHHCCEEEECCCCHHH--H-HHHHHHHCCCH
T ss_conf 94404997999999978888899--9-99999819791
No 239
>TIGR01795 CM_mono_cladeE chorismate mutase; InterPro: IPR010951 This entry describes monofunctional (non-fused) chorismate mutases (CM) in the actinobacteridae and alphaproteobacteria..
Probab=42.11 E-value=19 Score=14.43 Aligned_cols=41 Identities=24% Similarity=0.502 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHC---------CC---CHHHHHHHHHHHHHHHHHHH
Q ss_conf 1344766553678764201---------34---30244789999999999885
Q gi|255764494|r 225 EDFDSCLVEHICDTFKKEN---------GI---DLKQDTLALQRLKEAAEKAK 265 (652)
Q Consensus 225 ~d~D~~l~~~~~~~~~~~~---------~~---d~~~~~~a~~rL~~~~e~aK 265 (652)
++||.+++..+++.|+-.. +. |+....+...||+.-+..|+
T Consensus 13 DNIDaAvi~~LAERFk~T~~VG~LKA~~~laP~D~~RE~~Qi~RL~~lA~dA~ 65 (94)
T TIGR01795 13 DNIDAAVIHLLAERFKCTKQVGVLKAEAGLAPADPAREDRQIARLRRLAIDAK 65 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 13899999999878776678755654058779871138999999999875028
No 240
>PTZ00340 O-sialoglycoprotein endopeptidase; Provisional
Probab=41.74 E-value=20 Score=14.39 Aligned_cols=38 Identities=26% Similarity=0.501 Sum_probs=27.3
Q ss_pred HHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 1001111010135631101466307853056778865410111
Q gi|255764494|r 312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK 354 (652)
Q Consensus 312 ~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~ 354 (652)
.+.++++++..+ +..++++||-+.-..+|+.++++...
T Consensus 256 ~~k~~~a~~~~~-----~~~lvv~GGVAaN~~LR~~l~~~~~~ 293 (348)
T PTZ00340 256 VEVTERAMSHCG-----SNEVLIVGGVGCNLRLQEMMQQMAKE 293 (348)
T ss_pred HHHHHHHHHHHC-----CCEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 999999999878-----89599956577769999999999998
No 241
>PRK08768 consensus
Probab=41.66 E-value=19 Score=14.43 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=36.2
Q ss_pred HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf 001100111101013563110146630785305--6778865410111
Q gi|255764494|r 309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK 354 (652)
Q Consensus 309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~ 354 (652)
+.....++.+|.++++.+++|+.|..-|=+|.. |.=-..|.+.||.
T Consensus 277 ~~~~~~~~~al~~a~~~~~~i~yi~aHgtgT~~~D~~E~~ai~~~fg~ 324 (411)
T PRK08768 277 EGAARSMAAAMRDAKLNPEQIGYLNAHGTSTPLGDLAETMAMKRALGD 324 (411)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 999999999999769893102489967566755399999999998567
No 242
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Probab=41.44 E-value=11 Score=16.26 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=29.7
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--ECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 871999999999999999999838847336985--377887402578863442112222
Q gi|255764494|r 109 QYSPSQISAIVLQKMKETAESFLGETVSKAVIT--VPAYFNDAQRQATKDAGRIAGLDV 165 (652)
Q Consensus 109 ~~~peei~a~iL~~lk~~ae~~l~~~v~~~Vit--VP~~f~~~qR~a~~~Aa~~AGl~v 165 (652)
..++.++.+..++...+.+.- -...|+.+++. .|..|......+ +.++..+|+..
T Consensus 19 ~~~~~dL~~~a~~~al~~agl-~~~~ID~vi~G~~~~g~~~~~~~~a-~~~a~~~Gl~~ 75 (389)
T PRK06064 19 DVSLRDLAVEAGLEALEDAGI-DGKDIDAMYVGNMSGGRFVGQEHIA-ALIADYAGLAP 75 (389)
T ss_pred CCCHHHHHHHHHHHHHHHHCC-CHHHCCEEEEEECCCCCCCCCCCHH-HHHHHHCCCCC
T ss_conf 979999999999999998094-9899599999812766434324099-99999759999
No 243
>pfam05262 Borrelia_P83 Borrelia P83/100 protein. This family consists of several Borrelia P83/P100 antigen proteins.
Probab=41.34 E-value=20 Score=14.35 Aligned_cols=66 Identities=14% Similarity=0.256 Sum_probs=29.0
Q ss_pred EEEECCCCCC---HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC-------CCCCHHEECCCCCCCCC
Q ss_conf 4663078530---567788654101111111356531011111000223467-------52210000235665322
Q gi|255764494|r 331 EVVLVGGMTR---MPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG-------DVKDLLLLDVTPLSLGI 396 (652)
Q Consensus 331 ~V~lvGGssr---iP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~-------~~~~~~~~dv~p~slgi 396 (652)
.|+.+|-.|+ |--||+.|..|+-.....+.-.-+..|.=-.+|-|+..+ ...+..+-.++|.++|+
T Consensus 68 DVf~Ig~~s~~dhI~nlrrIlagYl~~~fgY~~~~Ae~lA~~itiYNAvyR~Dl~y~~~~Y~~~v~k~lt~~~~Gl 143 (489)
T pfam05262 68 DIFIIGSKAEVDHILNLRRILAGYLMAAYGYERSDAETIAKFITIYNAVYRGDLDYFKEFYKEVVTKSLTKENAGL 143 (489)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHCCH
T ss_conf 5698626566206888999999999986397733289999999998787726567787777888885158121430
No 244
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=41.31 E-value=11 Score=16.34 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=28.3
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|..++--|||.+.-|+.++.=.-+-|++|||++-
T Consensus 122 ~~~~~LSGGqkQrv~iA~aL~~~P~illLDEPt~gL 157 (205)
T cd03226 122 RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157 (205)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 891128999999999999997599999997997658
No 245
>KOG2314 consensus
Probab=41.27 E-value=20 Score=14.34 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=17.8
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 02998999999999999999872489
Q gi|255764494|r 550 DKIAEAEQKSIRESIDALRTLLNDAD 575 (652)
Q Consensus 550 ~klse~ek~~i~~~l~e~e~wl~~~~ 575 (652)
..+|++++++|++.|.+.....++.|
T Consensus 596 s~LS~e~~KkIkKnLKky~a~FeeqD 621 (698)
T KOG2314 596 SLLSEEKQKKIKKNLKKYSAQFEEQD 621 (698)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 41478899999988999998875531
No 246
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=41.06 E-value=6.5 Score=18.06 Aligned_cols=76 Identities=26% Similarity=0.387 Sum_probs=44.1
Q ss_pred CEEEEEEECCCEEEEEEEEECCC---------------EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH---
Q ss_conf 50799872441145431010231---------------465420133224552134476655367876420134302---
Q gi|255764494|r 187 RTVIVFDFGGGTFDVSLLEMGDG---------------VFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLK--- 248 (652)
Q Consensus 187 ~~vlV~D~Gggt~dvsi~~~~~~---------------~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~--- 248 (652)
+.+-+==|||-|||+|+--.... .++.|. .|-+-||=+..-.-+++.|++++ -++|+|+-
T Consensus 41 G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLl-RGQNlvGYrhyaDDvVe~Fv~ka-~~nGidvfRiF 118 (472)
T COG5016 41 GYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLL-RGQNLVGYRHYADDVVEKFVEKA-AENGIDVFRIF 118 (472)
T ss_pred CEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHH-CCCCCCCCCCCCHHHHHHHHHHH-HHCCCCEEEEC
T ss_conf 80578741770099999986479899999999867885889987-03751365678458999999999-86487579721
Q ss_pred ---HHHHHHHHHHHHHHHHHHH
Q ss_conf ---4478999999999988541
Q gi|255764494|r 249 ---QDTLALQRLKEAAEKAKIE 267 (652)
Q Consensus 249 ---~~~~a~~rL~~~~e~aK~~ 267 (652)
.|.|. |..+++.+|+.
T Consensus 119 DAlND~RN---l~~ai~a~kk~ 137 (472)
T COG5016 119 DALNDVRN---LKTAIKAAKKH 137 (472)
T ss_pred HHCCCHHH---HHHHHHHHHHC
T ss_conf 11046467---99999999961
No 247
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=41.01 E-value=12 Score=15.91 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=27.5
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
--|...+--|||.+--|..+|-=.-+=+++||||+-
T Consensus 172 r~p~~LSGGqkQRVaIA~aLa~~P~iLilDEPTagL 207 (320)
T PRK13631 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGL 207 (320)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 782209999999999999972399999975875559
No 248
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=40.98 E-value=20 Score=14.31 Aligned_cols=64 Identities=22% Similarity=0.376 Sum_probs=35.4
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCCC--CCCHHHHHHHHH---HHCCCCCCCCCCCH
Q ss_conf 58719999999999999999998388473369853--7788--740257886344---21122222222102
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAYF--NDAQRQATKDAG---RIAGLDVLRIINEP 172 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~f--~~~qR~a~~~Aa---~~AGl~v~~li~Ep 172 (652)
+.++|++|.+..++.+.+.+. .-...|+++++.+ |+.. ....|++.+.|. ...|+.+-+..-..
T Consensus 22 ~~~~~~~L~a~~i~~~l~r~~-i~~~~Id~vi~G~v~~~g~~~~n~aR~~al~aGlp~~vp~~tVnr~CaSG 92 (401)
T PRK08131 22 ASVRPDDLAATVIRRLVEKSG-FAGDDIEDVILGCTNQAGEDSRNVARNALLLAGLPVTVPGQTVNRLCASG 92 (401)
T ss_pred CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCHHHHH
T ss_conf 999889999999999999729-89899898999814665654466999999966999888716875253578
No 249
>TIGR02845 spore_V_AD stage V sporulation protein AD; InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation ..
Probab=40.91 E-value=11 Score=16.45 Aligned_cols=44 Identities=16% Similarity=0.399 Sum_probs=26.6
Q ss_pred HHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCCCC
Q ss_conf 100111101013563110146630785305--677886541011111
Q gi|255764494|r 312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNKSP 356 (652)
Q Consensus 312 ~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~~~ 356 (652)
.+.|+.=|++.+.+++|-| +|++|==+|+ +.++++|++.+|..+
T Consensus 207 aDTI~~Hf~dtg~~~~DYD-LIvTGDL~rvG~~I~~~LL~e~yg~~~ 252 (331)
T TIGR02845 207 ADTIEAHFKDTGRSVDDYD-LIVTGDLARVGSEILRKLLKEEYGYDV 252 (331)
T ss_pred HHHHHHHHHHCCCCCCEEE-EEEECCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999987078804013-678733002148999999888608750
No 250
>PRK10908 cell division protein FtsE; Provisional
Probab=40.88 E-value=13 Score=15.64 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=28.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8537788740257886344211222222221024788
Q gi|255764494|r 140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-..|...+.-|||.+--|..++.=.-+-|++||||+-
T Consensus 132 ~~~p~~LSGGq~QRvaiAraL~~~P~iLllDEPt~~L 168 (222)
T PRK10908 132 KNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNL 168 (222)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 4887668968999999999997699999990987667
No 251
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=40.75 E-value=13 Score=15.81 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=27.9
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|...+--|||.+--|+.+|-=.-+-+++||||+-
T Consensus 157 ~~p~~LSGGqkqRVaIA~~La~~P~iLlLDEPTagL 192 (304)
T PRK13651 157 KSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGL 192 (304)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 895428999999999999884599999972986658
No 252
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=40.74 E-value=11 Score=16.42 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=27.8
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
--|...+.-|||.+--|..++.=.-+=|++|||++-
T Consensus 125 ~~~~~LSGGq~QRv~iAraL~~~P~vLllDEPts~L 160 (233)
T PRK10771 125 RLPGELSGGQRQRVALARCLVREQPILLLDEPFSAL 160 (233)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 894559999999999999985599999992877557
No 253
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=40.59 E-value=13 Score=15.89 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=27.7
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-|..++.-|||.+--|..++.=..+-|++|||++-
T Consensus 140 ~~~~LSGGqrqRv~iA~aL~~~P~illLDEPTsgL 174 (226)
T cd03234 140 LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174 (226)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 73328999999999999996599989995886568
No 254
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.40 E-value=11 Score=16.21 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=28.3
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|...+--|||.+--|..+|-=.-+-+++|||++-
T Consensus 136 ~~p~~LSGGQrQRvaIAraL~~~P~iLilDEPTs~L 171 (279)
T PRK13635 136 REPHRLSGGQKQRVAIAGVLALQPDILILDEATSML 171 (279)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 793439999999999999997099989973874548
No 255
>PRK06157 acetyl-CoA acetyltransferase; Validated
Probab=40.39 E-value=8.4 Score=17.19 Aligned_cols=40 Identities=8% Similarity=0.282 Sum_probs=17.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 3678764201343024478999999999988541155650358
Q gi|255764494|r 234 HICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEI 276 (652)
Q Consensus 234 ~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i 276 (652)
.+...+-.+|+.+..+-.+++..+ +.+...-=+.|+.+.+
T Consensus 150 ~~a~~ym~~yG~t~e~l~~~~A~V---Avk~r~nA~~NP~A~~ 189 (400)
T PRK06157 150 QLASAYRAKHGVSREDLKRAMAHV---SVKSHANGARNPKAHL 189 (400)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH---HHHHHHHHHHCCCCCC
T ss_conf 999999999797987899999999---9999999860974125
No 256
>PRK13769 histidinol dehydrogenase; Provisional
Probab=40.06 E-value=21 Score=14.21 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=30.7
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHC
Q ss_conf 47336985377887402578863442112222222210247-8888603
Q gi|255764494|r 134 TVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA-AALAYGL 181 (652)
Q Consensus 134 ~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA-Aal~Y~~ 181 (652)
-|.++|+..|+. .--.+++-||.++|.+.+--+--.-| ||++||.
T Consensus 120 GV~~Ivv~tPP~---~~~~~il~aA~~~Gv~eiy~iGGaQAIAa~A~gt 165 (368)
T PRK13769 120 GVEEIYVVTPPR---GVTGELLAVAKELGVKGVLAIGGPHGLAYAVFHM 165 (368)
T ss_pred CCCEEEEECCCC---CCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCC
T ss_conf 998489967998---9888999999983987652053899999885377
No 257
>TIGR01499 folC FolC bifunctional protein; InterPro: IPR001645 Folylpolyglutamate synthase 6.3.2.17 from EC (FPGS) is responsible for the addition of a polyglutamate tail to folate and folate derivatives, is an ATP-dependent enzyme isolated from eukaryotic and bacterial sources, where it plays a key role in the retention of the intracellular folate pool Its sequence is moderately conserved between prokaryotes (gene folC) and eukaryotes. FPGS belongs to a protein family that contains a number of related peptidoglycan synthetases (Mur) 6.3.2. from EC (see ). A crystal structure of the MgATP complex of the enzyme from Lactobacillus casei reveals that folylpolyglutamate synthetase is a modular protein consisting of two domains, one with a typical mononucleotide-binding fold and the other strikingly similar to the folate-binding enzyme dihydrofolate reductase. The active site of the enzyme is located in a large interdomain cleft adjacent to an ATP-binding P-loop motif. Opposite this site, in the C domain, a cavity likely to be the folate binding site has been identified, and inspection of this cavity and the surrounding protein structure suggests that the glutamate tail of the substrate may project into the active site. A further feature of the structure is a well defined Omega loop, which contributes both to the active site and to interdomain interactions .; GO: 0004326 tetrahydrofolylpolyglutamate synthase activity, 0005524 ATP binding, 0009396 folic acid and derivative biosynthetic process.
Probab=39.99 E-value=21 Score=14.20 Aligned_cols=136 Identities=22% Similarity=0.345 Sum_probs=71.8
Q ss_pred EEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 79995795871999999999999999999838847336985377887402578863442112222222210247888860
Q gi|255764494|r 101 AWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG 180 (652)
Q Consensus 101 ~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~ 180 (652)
-+|.++|+.++.+++ +.+..+++...++.... -...=|.|| ++ -|+.|+.|
T Consensus 64 ERI~~nG~~i~d~~~-~~~~~~~~~~~~~~~~~----~~~~~~t~F------------E~-----------~T~~Af~~- 114 (460)
T TIGR01499 64 ERIRVNGEPISDEEL-AQAFEQVRPILKKLSQE----TEYSQPTFF------------EL-----------LTLLAFLY- 114 (460)
T ss_pred EEEEECCEECCHHHH-HHHHHHHHHHHHHHHCC----CCCCCCCHH------------HH-----------HHHHHHHH-
T ss_conf 347898857688999-99999999987533101----358777789------------99-----------99999999-
Q ss_pred CCCC-CCCEEEEEEEC-CCEEEEEEEEECCCEEEEECCCC---CCCCCCHHHHHHHHHHHHHHHHHHCCCCHH--HHHHH
Q ss_conf 3445-65507998724-41145431010231465420133---224552134476655367876420134302--44789
Q gi|255764494|r 181 LDKK-DARTVIVFDFG-GGTFDVSLLEMGDGVFEVKATNG---DTFLGGEDFDSCLVEHICDTFKKENGIDLK--QDTLA 253 (652)
Q Consensus 181 ~~~~-~~~~vlV~D~G-ggt~dvsi~~~~~~~~~vl~~~g---d~~lGG~d~D~~l~~~~~~~~~~~~~~d~~--~~~~a 253 (652)
+.+ .+--++|+=.| ||-+|.|=| +.+..+.++.+-| -..|| +.+-. |+..=+.-|+..-.+=.. ..+.+
T Consensus 115 -F~~~~~vd~av~EVGlGGrlDaTNv-~~~p~~~~iT~ig~DH~~~LG-~t~~~-IA~eKAGI~k~g~P~v~~~~~~~ea 190 (460)
T TIGR01499 115 -FAQLAQVDVAVLEVGLGGRLDATNV-VEKPLVSVITSIGLDHTEILG-DTLEE-IAWEKAGIIKEGVPIVTGEVQEPEA 190 (460)
T ss_pred -HHHHCCCCEEEEEECCCCCCCCCCC-CCCCEEEEECCCCHHHHHHHC-CCHHH-HHHHHHHHHCCCCCEEEECCCCHHH
T ss_conf -9985088289998737654455441-138637997277768886505-33799-9997457621676568714886689
Q ss_pred HHHHHHHHHHHH-HHCC
Q ss_conf 999999999885-4115
Q gi|255764494|r 254 LQRLKEAAEKAK-IELS 269 (652)
Q Consensus 254 ~~rL~~~~e~aK-~~LS 269 (652)
+.-+.+.|++.. -.|.
T Consensus 191 ~~v~~~~A~~~~~~~l~ 207 (460)
T TIGR01499 191 LEVLKKKAEEKGAAPLQ 207 (460)
T ss_pred HHHHHHHHHHHCCCEEE
T ss_conf 99999999971686046
No 258
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=39.98 E-value=20 Score=14.40 Aligned_cols=50 Identities=32% Similarity=0.428 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 999999999998388473369853778874025788634421122222222102478
Q gi|255764494|r 119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 119 iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
++..+++..+.+ .++-.||-||+.| ...|+.+|+. ||++.+-.|.|-.-.
T Consensus 53 Vf~tV~eAv~~~---~~d~svIfVPp~~---a~dAi~EAi~-agI~~iV~ITEgiP~ 102 (289)
T PRK05678 53 VFNTVKEAVEAT---GATASVIYVPPPF---AADAILEAID-AGIDLIVCITEGIPV 102 (289)
T ss_pred CCCCHHHHHHHC---CCCEEEEEECHHH---HHHHHHHHHH-CCCCEEEEECCCCCH
T ss_conf 306599998612---8886999707899---9999999986-799889994389978
No 259
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=39.89 E-value=11 Score=16.29 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=28.1
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
..|..++.-|||.+--|..++.=.-+=|++|||++-
T Consensus 141 ~~~~~LSGGqkQRvaiAraL~~~P~illlDEPTs~L 176 (233)
T PRK11629 141 HRPSELSGGERQRVAIARALVNNPRLVLADEPTGNL 176 (233)
T ss_pred CCCCEECHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 984663899999999999996599999992888879
No 260
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=39.76 E-value=21 Score=14.18 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=10.1
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 00112456689999999
Q gi|255764494|r 499 SGGLSSEDIEKMVKDAE 515 (652)
Q Consensus 499 ~~~Ls~eei~~~~~eae 515 (652)
...|+++|++.+.+..-
T Consensus 622 ~rTLtdeev~~~~~~~~ 638 (650)
T COG0072 622 ERTLTDEEVNALVNKIV 638 (650)
T ss_pred CCCCCHHHHHHHHHHHH
T ss_conf 88888799999999999
No 261
>TIGR01175 pilM type IV pilus assembly protein PilM; InterPro: IPR005883 The opportunistic pathogen Pseudomonas aeruginosa produces type 4 fimbriae which promote adhesion to epithelial cells and are associated with a form of surface translocation called twitching motility. Four genes, pilM-P, encode the necessary proteins with predicted sizes of 37.9, 22.2, 22.8 and 19.0 kDa, respectively and appear to form an operon. This protein is required for the assembly of the type IV fimbria in P. aeruginosa and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. ; GO: 0006461 protein complex assembly.
Probab=39.69 E-value=21 Score=14.17 Aligned_cols=190 Identities=22% Similarity=0.337 Sum_probs=96.8
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHH--C-----C---------CCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCC
Q ss_conf 863442112222222210247888860--3-----4---------45655079987244114543101023146542013
Q gi|255764494|r 154 TKDAGRIAGLDVLRIINEPTAAALAYG--L-----D---------KKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATN 217 (652)
Q Consensus 154 ~~~Aa~~AGl~v~~li~EptAAal~Y~--~-----~---------~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~ 217 (652)
-.++.+.+|+...-+--+..|..-.|. + . ......++++|+|.....++++.-.... ..
T Consensus 150 ~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-----~~ 224 (381)
T TIGR01175 150 RLDALKLAGLEPKVLDVESFALLRALRGNLLGEQLGSGTLRLTNYTEAGEDALLVDIGATSSTLNLLHGGRPL-----FT 224 (381)
T ss_pred HHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCE-----EE
T ss_conf 8888876176301002457788876620134555521011345532123213454315430000112066310-----00
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 32245521344766553678764201343024478999999999988541155650358630443467887212687311
Q gi|255764494|r 218 GDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTR 297 (652)
Q Consensus 218 gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR 297 (652)
.+..+|++++...+... ++.++.. +..+|.-.+... ++..-.. + -+++.+++
T Consensus 225 ~~~~~g~~~~~~~~~~~--------~~~~~~~-----------~~~~~~g~~~~~-~~~~~~~---~-----~~~~~~~~ 276 (381)
T TIGR01175 225 REVPLGGRQLTSELSRA--------YGLPPEE-----------AGEAKLGYTTPT-TPFDDEE---D-----LLNFDLSQ 276 (381)
T ss_pred ECCCCCHHHHHHHHHHH--------HCCCHHH-----------HHHHHHCCCCCC-CCCCCHH---H-----HHHHCCCC
T ss_conf 01135503556678876--------2687111-----------103340220013-4542145---6-----65300013
Q ss_pred CCCC-----CCCCCCHHHHHHCCCCCCHH--CCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH-
Q ss_conf 0000-----12342000011001111010--135631101466307853056778865410111111135653101111-
Q gi|255764494|r 298 AQFE-----RLVNHLIQKTVEPCKKCLQD--AGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMG- 369 (652)
Q Consensus 298 ~~fe-----~l~~~l~~~~~~~i~~~L~~--a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~G- 369 (652)
..+- +...++...+..-+.+.+.- +.-....++.+.+.||+..+..+...+.+.++.. ....||-..++.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gg~~~~~~l~~~~~~~~~~~-~~~~~p~~~~~~~~ 355 (381)
T TIGR01175 277 GGLPPLYDPEVLRPFLGELVDELRRSLQFFLAQSGDNELDGLLLAGGGAGLSGLDAALGQRLGLP-TEVANPFALLALDQ 355 (381)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCC-CEECCHHHHHHHCH
T ss_conf 56543211578888888999999988887652132001103576067520244588877541443-00002156653010
Q ss_pred HHHCCCCC
Q ss_conf 10002234
Q gi|255764494|r 370 AAIQAGVL 377 (652)
Q Consensus 370 AA~~a~~l 377 (652)
+......+
T Consensus 356 ~~~~~~~~ 363 (381)
T TIGR01175 356 AGVDAGFL 363 (381)
T ss_pred HHHCCCCC
T ss_conf 01002320
No 262
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=39.59 E-value=21 Score=14.26 Aligned_cols=54 Identities=28% Similarity=0.288 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHCCC-CCEEEEEECC-CCCCCHHHHHHHHHHHCCCCC-CCCCCCHHHHH
Q ss_conf 99999999983884-7336985377-887402578863442112222-22221024788
Q gi|255764494|r 121 QKMKETAESFLGET-VSKAVITVPA-YFNDAQRQATKDAGRIAGLDV-LRIINEPTAAA 176 (652)
Q Consensus 121 ~~lk~~ae~~l~~~-v~~~VitVP~-~f~~~qR~a~~~Aa~~AGl~v-~~li~EptAAa 176 (652)
+.++..|...+..- +. .-...|+ ..+-.|||.+.-|-.++. +. +=+++|||||-
T Consensus 120 ~~m~~~A~~~l~~lg~~-~~~~~~v~~LsiaqrQ~VeIArAl~~-~arllIlDEPTaaL 176 (500)
T COG1129 120 KAMRRRARELLARLGLD-IDPDTLVGDLSIAQRQMVEIARALSF-DARVLILDEPTAAL 176 (500)
T ss_pred HHHHHHHHHHHHHCCCC-CCCCCHHHHCCHHHHHHHHHHHHHHC-CCCEEEECCCCCCC
T ss_conf 99999999999973898-87000033089999999999998626-99899973987679
No 263
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=39.37 E-value=13 Score=15.87 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=26.4
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
..|...+--|||.+.-|..++.=.-+-+++|||++-
T Consensus 100 ~~~~~LSGG~~Qrv~lAral~~~p~llllDEPT~gL 135 (182)
T cd03215 100 ALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGV 135 (182)
T ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 185579989999999999997199999986875458
No 264
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=38.95 E-value=19 Score=14.46 Aligned_cols=37 Identities=32% Similarity=0.252 Sum_probs=30.4
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8537788740257886344211222222221024788
Q gi|255764494|r 140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
=..|--++--|||.+.-|-.+|+=.-+-+-+|||-|-
T Consensus 152 ~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTAL 188 (534)
T COG4172 152 DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTAL 188 (534)
T ss_pred HHCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHH
T ss_conf 4387234852365899999973899868616985220
No 265
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=38.84 E-value=22 Score=14.08 Aligned_cols=53 Identities=26% Similarity=0.377 Sum_probs=30.8
Q ss_pred HHHHHHHHHCCCCCCCEEEEEEEC-CCEEEEEEEEECCCEEEEECCCCCC---CCCCHHHHH
Q ss_conf 247888860344565507998724-4114543101023146542013322---455213447
Q gi|255764494|r 172 PTAAALAYGLDKKDARTVIVFDFG-GGTFDVSLLEMGDGVFEVKATNGDT---FLGGEDFDS 229 (652)
Q Consensus 172 ptAAal~Y~~~~~~~~~vlV~D~G-ggt~dvsi~~~~~~~~~vl~~~gd~---~lGG~d~D~ 229 (652)
-||+|+.| +....--++|+-.| ||.+|.+=+ +. ..+.|+.+-|-. .|| +.+..
T Consensus 127 ~T~~A~~~--F~~~~vD~aVlEvGLGGrlDATNv-i~-~~vsvIT~IglDH~~~LG-~Tle~ 183 (416)
T PRK10846 127 GTLSALWL--FKQAQLDVVILEVGLGGRLDATNI-VD-ADVAVITSIALDHTDWLG-PDRES 183 (416)
T ss_pred HHHHHHHH--HHHCCCCEEEEEECCCEEEHHHCC-CC-CCEEEECCCCHHHHHHHC-CCHHH
T ss_conf 99999999--985699989998357513432138-88-877998870476420017-99999
No 266
>pfam00480 ROK ROK family.
Probab=38.81 E-value=22 Score=14.08 Aligned_cols=35 Identities=37% Similarity=0.428 Sum_probs=22.0
Q ss_pred CCCCCCCCCCHHHHHHHHHCC--CCCCCEEEEEEECCC
Q ss_conf 222222221024788886034--456550799872441
Q gi|255764494|r 162 GLDVLRIINEPTAAALAYGLD--KKDARTVIVFDFGGG 197 (652)
Q Consensus 162 Gl~v~~li~EptAAal~Y~~~--~~~~~~vlV~D~Ggg 197 (652)
|++| .+.|+..|||++-.+. .+..++++++-+|-|
T Consensus 94 ~~Pv-~v~NDa~aaalaE~~~G~~~~~~~~~~i~lgtG 130 (181)
T pfam00480 94 NVPV-YIENDANAAALGEKVFGASKDVSNVIYVTIGTG 130 (181)
T ss_pred CCCE-EECCHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 9980-432226499999998298755673899996774
No 267
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.75 E-value=14 Score=15.41 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=27.9
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
--|-..+.-|||.+--|+.+|.=..+-+++||||+-
T Consensus 140 r~p~~LSGGqkqRvaiA~aLa~~P~vLlLDEPTs~L 175 (288)
T PRK13643 140 KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGL 175 (288)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 797639999999999999997499999995885558
No 268
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.59 E-value=14 Score=15.61 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=27.4
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
--|...+.-|||.+--|..+|.=.-+-+++||||+-
T Consensus 137 ~~~~~LSGGqkqRvaIA~aLa~~P~iLlLDEPTagL 172 (285)
T PRK13636 137 KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL 172 (285)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 880019999999999999997499899997875559
No 269
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=38.56 E-value=12 Score=16.09 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=26.7
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-|..++.-|||.+.-|..++.=.-+=|++|||++-
T Consensus 129 ~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPtsgL 163 (213)
T cd03235 129 QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGV 163 (213)
T ss_pred CHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 84657989999999999996699999981886678
No 270
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III; InterPro: IPR004655 Beta-ketoacyl-acyl carrier protein synthase III (FabH), in general, initiates elongation in type II fatty acid synthase systems found in bacteria and plants. It is responsible for producing the multitude of fatty acid structures found in bacterial membranes . The two members of this subfamily from Bacillus subtilis differ from each other, and from FabH from Escherichia coli, in acyl group specificity. Active site residues include Cys112, His244 and Asn274 of Escherichia coli FabH. Cys-112 is the site of acyl group attachment. ; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process.
Probab=38.14 E-value=22 Score=14.00 Aligned_cols=83 Identities=27% Similarity=0.337 Sum_probs=51.5
Q ss_pred CCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC---C----CCC-CCCCCCHHHHHHHHC
Q ss_conf 12342000011001111010135631101466307853056778865410111---1----111-356531011111000
Q gi|255764494|r 302 RLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK---S----PSK-GVNPDEVVAMGAAIQ 373 (652)
Q Consensus 302 ~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~---~----~~~-~~npdeaVa~GAA~~ 373 (652)
++.+-=+.+..+.++++|..++++++|||-.+--=--.|| -+.+.+.|.- . +.+ .=|- .|.+.+.|+-
T Consensus 222 evFk~Av~~m~~~~~~~l~~a~l~~~DiD~lvPHQAN~RI---i~a~ak~L~~~~~~Vv~Tv~khyGNT-SAASiP~AL~ 297 (329)
T TIGR00747 222 EVFKHAVRKMLKVVEETLEAAGLSKEDIDWLVPHQANIRI---IEALAKRLELKESKVVKTVHKHYGNT-SAASIPIALD 297 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHCCEECCCCHHHHH---HHHHHHHHCCCCCCEEEEEECCCCCC-HHHHHHHHHH
T ss_conf 2588999999999999999718783046155554111689---99999970898031686320013463-0434667899
Q ss_pred CCCCCCCCC--CHHEEC
Q ss_conf 223467522--100002
Q gi|255764494|r 374 AGVLQGDVK--DLLLLD 388 (652)
Q Consensus 374 a~~ls~~~~--~~~~~d 388 (652)
..+-.+++| |++|.+
T Consensus 298 E~~~~G~iK~Gd~~LL~ 314 (329)
T TIGR00747 298 ELLETGRIKKGDLLLLV 314 (329)
T ss_pred HHHHCCCCCCCCEEEEE
T ss_conf 98741777724488876
No 271
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.07 E-value=15 Score=15.26 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=26.6
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|...+--|||.+--|..+|-=.-+=+++||||+-
T Consensus 141 ~~p~~LSGGqkqRVaiA~aLa~~P~iLilDEPTagL 176 (286)
T PRK13646 141 QSPFQMSGGQMRKIAIVSILAMNPDIIVVDEPTAGL 176 (286)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 694329999999999999985198999983874438
No 272
>KOG1939 consensus
Probab=37.99 E-value=9.4 Score=16.83 Aligned_cols=20 Identities=45% Similarity=0.707 Sum_probs=15.4
Q ss_pred CCCEEEEEEECCCEEEEEEE
Q ss_conf 65507998724411454310
Q gi|255764494|r 185 DARTVIVFDFGGGTFDVSLL 204 (652)
Q Consensus 185 ~~~~vlV~D~Gggt~dvsi~ 204 (652)
+..-+.=|||||.++|||-.
T Consensus 303 ~~~P~IGFDMGGTSTDVsRY 322 (1247)
T KOG1939 303 DKKPLIGFDMGGTSTDVSRY 322 (1247)
T ss_pred CCCCEEEECCCCCCCCEECC
T ss_conf 67834665478874420024
No 273
>PRK06365 acetyl-CoA acetyltransferase; Provisional
Probab=37.89 E-value=16 Score=15.12 Aligned_cols=39 Identities=8% Similarity=0.024 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 6553678764201343024478999999999988541155650358
Q gi|255764494|r 231 LVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEI 276 (652)
Q Consensus 231 l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i 276 (652)
++-.+..++-.+|+.... . |-.-+.+...-=..|+.+.+
T Consensus 146 ~~Al~a~rym~~yG~t~e----~---lA~Vavk~r~~A~~NP~A~~ 184 (415)
T PRK06365 146 YYAMMAVRHMYEFGTTVE----Q---MAKVSVKNHGNAIHNPYAQS 184 (415)
T ss_pred HHHHHHHHHHHHHCCCHH----H---HHHHHHHHHHHHCCCHHHHC
T ss_conf 999999999998698899----9---99999998775525937648
No 274
>PRK07855 lipid-transfer protein; Provisional
Probab=37.88 E-value=19 Score=14.58 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=8.5
Q ss_pred HHHHHHHHHHCCCCH
Q ss_conf 536787642013430
Q gi|255764494|r 233 EHICDTFKKENGIDL 247 (652)
Q Consensus 233 ~~~~~~~~~~~~~d~ 247 (652)
-.+..++-.+|+.+.
T Consensus 151 Al~a~rym~~yG~t~ 165 (386)
T PRK07855 151 AMIARRYMHEYGATS 165 (386)
T ss_pred HHHHHHHHHHHCCCH
T ss_conf 999999999979599
No 275
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=37.84 E-value=15 Score=15.29 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=26.9
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|..++.-|||.+--|..++.=.-+-|++|||++.
T Consensus 136 ~~~~~LSGG~kQRv~iAraL~~~P~llllDEPTs~L 171 (218)
T cd03255 136 HYPSELSGGQQQRVAIARALANDPKIILADEPTGNL 171 (218)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 887638999999999999985599999981888768
No 276
>COG5418 Predicted secreted protein [Function unknown]
Probab=37.75 E-value=17 Score=14.80 Aligned_cols=72 Identities=21% Similarity=0.397 Sum_probs=38.2
Q ss_pred HHHHHHHHCCCCC-EEEE-EECCCCCCCCCCCEEEEEECCCCCCCCC-CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECC
Q ss_conf 9998854115565-0358-6304434678872126873110000123-42000011001111010135631101466307
Q gi|255764494|r 260 AAEKAKIELSSTS-QTEI-NLPFISANSAGAQHLNMKLTRAQFERLV-NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVG 336 (652)
Q Consensus 260 ~~e~aK~~LS~~~-~~~i-~i~~~~~~~~~g~d~~~~itR~~fe~l~-~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvG 336 (652)
.+..++..|++|+ .+.| .+++-..-..+ .+ .-.+||++|+..- ..+..++.++|-+.|++ ..++.| .+++||
T Consensus 30 ~~~ev~~~l~~npk~~~IiqlPCPE~~yLg-~~-R~~~tke~~d~~~yRr~c~ki~~pi~~~l~e--~k~d~~-kii~IG 104 (164)
T COG5418 30 TAKEVRKALPSNPKDWNIIQLPCPEFEYLG-WP-RPPMTKEVFDHPGYRRVCRKIADPIGRVLEE--EKPDGI-KIIFIG 104 (164)
T ss_pred HHHHHHHHHCCCCCCCCEEECCCCHHHHHC-CC-CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHH--HCCCCC-EEEEEE
T ss_conf 788888764059777855762583677607-89-9874877742553999999999999999998--486770-599995
No 277
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=37.39 E-value=16 Score=15.02 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=28.8
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8537788740257886344211222222221024788
Q gi|255764494|r 140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-..|..++--|||.+--|-.++.=.-+=|++|||++-
T Consensus 141 ~~~p~~LSGGq~QRv~iAraL~~~P~llllDEPT~~L 177 (228)
T PRK10584 141 DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNL 177 (228)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 0887889979999999999987599999984997678
No 278
>PRK08256 lipid-transfer protein; Provisional
Probab=37.34 E-value=9.2 Score=16.89 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=26.2
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 587199999999999999999983884733698537788740257886344211222222
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLR 167 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~ 167 (652)
..++..++.+.-.+...+.|-- -...|+.+++..-- -.....+....++-++|+.+.+
T Consensus 18 ~~~~~~~L~~eA~~~AL~dAGi-~~~~ID~v~~G~~~-~~~~~~~~a~~~~g~~g~P~~t 75 (391)
T PRK08256 18 ASWDYPDMAAEAGRAALADAGI-DYDEVQQAYVGYVY-GDSTSGQRALYEVGMTGIPVVN 75 (391)
T ss_pred CCCCHHHHHHHHHHHHHHHCCC-CHHHCCEEEEEECC-CCCCCHHHHHHHCCCCCCCEEE
T ss_conf 9999999999999999998298-98998999897036-8750059999961336996588
No 279
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=37.33 E-value=15 Score=15.36 Aligned_cols=37 Identities=24% Similarity=0.211 Sum_probs=28.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8537788740257886344211222222221024788
Q gi|255764494|r 140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-.-|..++--|||.+--|..++.=.-+-|++||||+-
T Consensus 136 ~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPTs~L 172 (242)
T PRK11124 136 DRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172 (242)
T ss_pred HCCCHHCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 3873227999989999876433799799976886548
No 280
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.21 E-value=14 Score=15.44 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=27.8
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|...+--|||.+--|+.+|-=.-+=+++||||+-
T Consensus 140 ~~p~~LSGGqkQRvaiA~aL~~~P~iLllDEPTs~L 175 (287)
T PRK13637 140 KSPFELSGGQKRRVAIAGVVAMEPKVLILDEPTAGL 175 (287)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 891129988999999999998399999983886648
No 281
>PRK07516 acetyl-CoA acetyltransferase; Provisional
Probab=37.20 E-value=9.6 Score=16.75 Aligned_cols=32 Identities=9% Similarity=-0.020 Sum_probs=21.5
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 719999999999999999998388473369853
Q gi|255764494|r 110 YSPSQISAIVLQKMKETAESFLGETVSKAVITV 142 (652)
Q Consensus 110 ~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV 142 (652)
.++.++.+..++...+.|-- -...|+.+++..
T Consensus 20 ~s~~~L~~~A~~~Al~dAgl-~~~dID~v~~G~ 51 (389)
T PRK07516 20 ETLESLIVRVAREALADAGI-AAGDVDGIFLGH 51 (389)
T ss_pred CCHHHHHHHHHHHHHHHHCC-CHHHCCEEEEEE
T ss_conf 89999999999999999690-989939999982
No 282
>cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=36.95 E-value=21 Score=14.11 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=32.8
Q ss_pred HHHHCCCCCCHHCCCCCEEEEE--EEEC-----CCCCCHHHHHHHHHHCCCCC
Q ss_conf 0110011110101356311014--6630-----78530567788654101111
Q gi|255764494|r 310 KTVEPCKKCLQDAGLSPSDIDE--VVLV-----GGMTRMPKIQQSVQDFFNKS 355 (652)
Q Consensus 310 ~~~~~i~~~L~~a~~~~~~I~~--V~lv-----GGssriP~v~~~i~~~fg~~ 355 (652)
.+++-|+.+|+.+|.+.+||=. +.|+ .+....+.+.+...++|+..
T Consensus 45 ~v~~ni~~~L~~aG~~~~dVVk~~vylv~~~~~~~~~D~~~~~~~~~~~f~~~ 97 (126)
T cd06151 45 SVLKRIETILQSQGLTMGDVVKMRVFLVADPALDGKMDFAGFMKAYRQFFGTA 97 (126)
T ss_pred HHHHHHHHHHHHCCCCHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999849998998999999952665454366999999999985664
No 283
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.75 E-value=16 Score=15.18 Aligned_cols=37 Identities=24% Similarity=0.176 Sum_probs=28.6
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8537788740257886344211222222221024788
Q gi|255764494|r 140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
=.-|...+--|||.+--|-.++.=..+-|.+|||+|-
T Consensus 131 ~~~p~~LSGGq~QRvaIARALv~~P~illlDEPts~L 167 (235)
T cd03261 131 DLYPAELSGGMKKRVALARALALDPELLLYDEPTAGL 167 (235)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 4784106999999999999985489989980886647
No 284
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=36.70 E-value=12 Score=16.10 Aligned_cols=85 Identities=25% Similarity=0.406 Sum_probs=42.4
Q ss_pred HHHCCCCCCCHHHHHHHHCCC-EEEEEC-CCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 675498687267876520198-699975-998279995795871999999999999999999838847336985377887
Q gi|255764494|r 70 KRLIGRRFNDSTVAKDASLVP-FKIVEG-KGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFN 147 (652)
Q Consensus 70 KrliG~~~~d~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~ 147 (652)
||-+|--| ++.+.+| |.|..| .-|........+..+++.|+.++ | +...+-=.|..-+
T Consensus 74 kRr~GYVF------QeA~LFPHl~Vr~NL~YG~~~~~~~~r~i~~~~v~~lL------------g--i~hLL~R~p~~LS 133 (361)
T TIGR02142 74 KRRIGYVF------QEARLFPHLSVRGNLRYGMKRARPKERRISFERVIELL------------G--IEHLLERLPGRLS 133 (361)
T ss_pred CCEEEEEE------ECCEECCCHHHHHHHHCCCCCCCHHHCCCCHHHHHHHH------------C--CCCCCCCCCCCCC
T ss_conf 11353688------53550785233455125721057412137889999874------------6--7511216788757
Q ss_pred --CCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf --40257886344211222222221024788
Q gi|255764494|r 148 --DAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 148 --~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
+.||=|+=-| -++. .-+=|++||-||-
T Consensus 134 GGEkQRVAIGRA-LLs~-P~LLLMDEPLaaL 162 (361)
T TIGR02142 134 GGEKQRVAIGRA-LLSS-PRLLLMDEPLAAL 162 (361)
T ss_pred CCCHHHHHHHHH-HHCC-CCHHHCCCCHHHC
T ss_conf 840477889988-7418-7411104662340
No 285
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=36.57 E-value=14 Score=15.63 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=28.1
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|..++--|||.+--|..++.=..+-+++|||++-
T Consensus 130 ~~~~~LSGGqkQrv~iAral~~~P~ililDEPTsgL 165 (211)
T cd03225 130 RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGL 165 (211)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 895459998999999999997599999997985558
No 286
>pfam02970 TBCA Tubulin binding cofactor A.
Probab=36.47 E-value=23 Score=13.82 Aligned_cols=68 Identities=13% Similarity=0.296 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 68999999998999899999999999999999999999---9872202998999999999999999872489
Q gi|255764494|r 507 IEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQS---LREHGDKIAEAEQKSIRESIDALRTLLNDAD 575 (652)
Q Consensus 507 i~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~---l~e~~~klse~ek~~i~~~l~e~e~wl~~~~ 575 (652)
+.|++++...+..+-...+.+++..-.-..--|.++++ |++ ...+-++-+..|..++++++.||.+..
T Consensus 9 vkRL~KE~~~Y~kE~~~q~~rvek~k~e~~dey~ikkq~evL~E-t~~miPd~~~Rl~~a~~~L~~~l~~~~ 79 (90)
T pfam02970 9 VKRLIKEEASYEKEVEQQEERVEKLKAEGADEYDLKKQEEVLKE-TQMMLPDCKRRLQKAVADLEEYLEEYE 79 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999999998758988889999999999-999707899999999999999998857
No 287
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.26 E-value=16 Score=15.14 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=26.9
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-|...+--|||.+--|+.+|.=.-+-+++||||+-
T Consensus 142 ~p~~LSGGqkqRvaiA~aL~~~P~iLllDEPTsgL 176 (280)
T PRK13649 142 NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176 (280)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 90009999999999999997499999984875548
No 288
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=36.18 E-value=24 Score=13.79 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=9.1
Q ss_pred CEEECHHHHH--HHHHHHHH
Q ss_conf 9587199999--99999999
Q gi|255764494|r 107 GKQYSPSQIS--AIVLQKMK 124 (652)
Q Consensus 107 ~~~~~peei~--a~iL~~lk 124 (652)
+..++|+|+. +.+|..++
T Consensus 82 g~~L~~~EL~~i~~~L~~~~ 101 (780)
T PRK00409 82 GGVLSGDELLEIAKTLRYFR 101 (780)
T ss_pred CCCCCHHHHHHHHHHHHHHH
T ss_conf 89789999999999999999
No 289
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=36.14 E-value=24 Score=13.78 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=31.6
Q ss_pred EEEEEECCCCCCHHHHH-HHHHHCCCCCCCCCC-CCCCHHHHHHHHCCCC
Q ss_conf 01466307853056778-865410111111135-6531011111000223
Q gi|255764494|r 329 IDEVVLVGGMTRMPKIQ-QSVQDFFNKSPSKGV-NPDEVVAMGAAIQAGV 376 (652)
Q Consensus 329 I~~V~lvGGssriP~v~-~~i~~~fg~~~~~~~-npdeaVa~GAA~~a~~ 376 (652)
++.+.+.||...-=..- +++.+.+..++...- -.|.-.|.|||+++..
T Consensus 286 ~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAAl~~~~ 335 (555)
T COG2192 286 EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAALAVKR 335 (555)
T ss_pred CCCEEECCCEEEEEEEHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 66448715213543112767605667615765788984018999999999
No 290
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain; InterPro: IPR005972 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex.
Probab=36.13 E-value=4 Score=19.62 Aligned_cols=129 Identities=19% Similarity=0.270 Sum_probs=49.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC-----C-----CCCEEEEEECCCCCCCC
Q ss_conf 3322455213447665536787642013430244789999999999885411-----5-----56503586304434678
Q gi|255764494|r 217 NGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIEL-----S-----STSQTEINLPFISANSA 286 (652)
Q Consensus 217 ~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~L-----S-----~~~~~~i~i~~~~~~~~ 286 (652)
-||-|+|||.+-..+ |++++.-+--...+.|.- +. =+..+.+||-.| | ..-+...-||.+.-++.
T Consensus 216 iGdYNIGGDAW~~~~---lLEe~GlrvvA~~sGDgT-~~-~~~~~~~akLnli~CyRSmNYi~~~MEekYGiPW~e~NFf 290 (521)
T TIGR01282 216 IGDYNIGGDAWASRI---LLEEIGLRVVAQWSGDGT-LA-EIENTPKAKLNLIHCYRSMNYISRHMEEKYGIPWMEYNFF 290 (521)
T ss_pred EECCCCCCHHHHHHH---HHHHCCCEEEEEECCCHH-HH-HHHCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCEEEECC
T ss_conf 724477730889999---997369489985026268-99-9860666664689851436688778786508983687334
Q ss_pred CCCEEEEEECC--C-----CCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 87212687311--0-----00012342000011001111010135631101466307853056778865410
Q gi|255764494|r 287 GAQHLNMKLTR--A-----QFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDF 351 (652)
Q Consensus 287 ~g~d~~~~itR--~-----~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~ 351 (652)
|...+..+|.. + ++.+-++..+.+=...++.++.+..-..+.=...+.||| +|--.+..+.+++
T Consensus 291 Gp~~i~~sLR~iA~~FDd~~i~~~~E~VIA~y~~~~~~~i~~yr~rl~Gk~v~L~vGG-lR~rh~~~a~~dL 361 (521)
T TIGR01282 291 GPTKIAESLRKIAEFFDDPEIKEKAEEVIAKYQPQVDAVIAKYRPRLEGKTVMLYVGG-LRPRHVIGAYEDL 361 (521)
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC-CCCCHHHHHHHHC
T ss_conf 8468999999998546966788888899998889999999999874249999997178-9740235446538
No 291
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=36.12 E-value=22 Score=14.00 Aligned_cols=201 Identities=20% Similarity=0.290 Sum_probs=89.4
Q ss_pred EEECCCCCCCH-HHHHHHHHHHCCCCCCC---C---CCCHHHHH--HHHHCCCC-CCCEEEEEEECCCEEEEEEEEECCC
Q ss_conf 85377887402-57886344211222222---2---21024788--88603445-6550799872441145431010231
Q gi|255764494|r 140 ITVPAYFNDAQ-RQATKDAGRIAGLDVLR---I---INEPTAAA--LAYGLDKK-DARTVIVFDFGGGTFDVSLLEMGDG 209 (652)
Q Consensus 140 itVP~~f~~~q-R~a~~~Aa~~AGl~v~~---l---i~EptAAa--l~Y~~~~~-~~~~vlV~D~Gggt~dvsi~~~~~~ 209 (652)
+.||+|--|.+ -..+.+-|++.|+.-++ + +|-- |+| .+|-+.+. ++-+++|..||||+ ||....+|
T Consensus 121 ~gvPayIVDPvvVDEm~~~Ar~SG~p~i~RkSiFHALN~K-AVarr~A~e~gk~yee~n~vVaHmGggi---SV~ah~~G 196 (358)
T COG3426 121 LGVPAYIVDPVVVDEMEDVARFSGIPEIERKSIFHALNQK-AVARRAAKEVGKRYEEMNIVVAHMGGGI---SVGAHKQG 196 (358)
T ss_pred CCCCEEEECCEEHHHCCHHHHHCCCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCHHHHEEEEEECCCCE---EEEEECCC
T ss_conf 0997166675003220545510689662057788886278-9999999985225455337888606843---78871478
Q ss_pred E-EEEECC-CCCCCCC----CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 4-654201-3322455----213447665536787642013430244789999999999885411556503586304434
Q gi|255764494|r 210 V-FEVKAT-NGDTFLG----GEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISA 283 (652)
Q Consensus 210 ~-~~vl~~-~gd~~lG----G~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~ 283 (652)
. ++|-.+ .|+.-++ |.-=...+++.| |..+|. .+.+++.+....- -+.. +
T Consensus 197 rvIDvnnaldgeGPfspersG~lP~~dlv~lc---fSgk~t----------------~~El~k~i~g~gG-~~ay--l-- 252 (358)
T COG3426 197 RVIDVNNALDGEGPFSPERSGTLPTGDLVRLC---FSGKYT----------------EEELLKKITGKGG-LVAY--L-- 252 (358)
T ss_pred CEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH---HCCCCC----------------HHHHHHHHHCCCC-EEEE--E--
T ss_conf 57852688789999882327898758999999---657333----------------9999998506885-5998--3--
Q ss_pred CCCCCCEEEEEECCCC-CCCCCCCCHHHHH-HCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC----CCC
Q ss_conf 6788721268731100-0012342000011-001111010135631101466307853056778865410111----111
Q gi|255764494|r 284 NSAGAQHLNMKLTRAQ-FERLVNHLIQKTV-EPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK----SPS 357 (652)
Q Consensus 284 ~~~~g~d~~~~itR~~-fe~l~~~l~~~~~-~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~----~~~ 357 (652)
+-.|+.-...|.+ =++-++-.++-+. +.++..=..+-.-+..+|.|+|+||-.+--.+-.+|.++..- .+.
T Consensus 253 ---GT~d~~~v~~~~~~Gd~~a~~~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~ 329 (358)
T COG3426 253 ---GTNDAKEVERRIEQGDEKAKLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVY 329 (358)
T ss_pred ---CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCEEEC
T ss_conf ---46409999999971319999999999999999987666430798777997161154799999999988662315761
Q ss_pred CCCCCCCHHHHHHH
Q ss_conf 13565310111110
Q gi|255764494|r 358 KGVNPDEVVAMGAA 371 (652)
Q Consensus 358 ~~~npdeaVa~GAA 371 (652)
-.-|-.+|.|.||-
T Consensus 330 PGE~EleALA~G~l 343 (358)
T COG3426 330 PGEDELEALAEGAL 343 (358)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 78068999986337
No 292
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=35.96 E-value=24 Score=13.76 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=10.4
Q ss_pred HHHHHHHHCCCCCCCEEEEEE
Q ss_conf 478888603445655079987
Q gi|255764494|r 173 TAAALAYGLDKKDARTVIVFD 193 (652)
Q Consensus 173 tAAal~Y~~~~~~~~~vlV~D 193 (652)
-|.||.|++.......++++|
T Consensus 72 K~~alN~al~~a~gd~v~~~D 92 (241)
T cd06427 72 KPKACNYALAFARGEYVVIYD 92 (241)
T ss_pred HHHHHHHHHHHCCCCEEEEEC
T ss_conf 699999999961588599978
No 293
>pfam01385 Transposase_2 Probable transposase. This family includes IS891, IS1136 and IS1341. DUF1225, pfam06774, has now been merged into this family.
Probab=35.95 E-value=24 Score=13.76 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=4.3
Q ss_pred EEEEEEECCCE
Q ss_conf 07998724411
Q gi|255764494|r 188 TVIVFDFGGGT 198 (652)
Q Consensus 188 ~vlV~D~Gggt 198 (652)
.++=+|+|=.+
T Consensus 124 ~~~GIDlGi~~ 134 (226)
T pfam01385 124 KAAGIDLGINN 134 (226)
T ss_pred CEEEEECCCCE
T ss_conf 35899527765
No 294
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.89 E-value=15 Score=15.29 Aligned_cols=40 Identities=20% Similarity=0.129 Sum_probs=29.4
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 3698537788740257886344211222222221024788
Q gi|255764494|r 137 KAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 137 ~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
+.-=.-|..++--|||.+--|..++.=.-+=|++|||++-
T Consensus 123 ~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPts~L 162 (220)
T cd03293 123 GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSAL 162 (220)
T ss_pred HHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 4761893129999999999999986699999980887656
No 295
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.83 E-value=16 Score=15.08 Aligned_cols=39 Identities=21% Similarity=0.086 Sum_probs=29.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 698537788740257886344211222222221024788
Q gi|255764494|r 138 AVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 138 ~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
..-.-|...+--|||.+--|..+|.=.-+-+++||||+-
T Consensus 129 ~~~~~p~~LSGGqkQRvaiA~aLa~~P~iLiLDEPTs~L 167 (274)
T PRK13644 129 YRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSML 167 (274)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 762891109976999999999998299999997986678
No 296
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=35.82 E-value=24 Score=13.75 Aligned_cols=72 Identities=22% Similarity=0.264 Sum_probs=37.0
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--ECC--CCCCCHHHHHHHHH---HHCCCCCCCCCCCH-HHHHHHH
Q ss_conf 5871999999999999999999838847336985--377--88740257886344---21122222222102-4788886
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVIT--VPA--YFNDAQRQATKDAG---RIAGLDVLRIINEP-TAAALAY 179 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~Vit--VP~--~f~~~qR~a~~~Aa---~~AGl~v~~li~Ep-tAAal~Y 179 (652)
+.++|++|.+..++.+...+...-...|+++++. +|. ......|++.+.|+ ...++.+-|..-.. .|..+++
T Consensus 27 ~~~~~~~L~a~~i~~~l~r~~~l~~~~Id~vi~G~~~~~~~~g~n~aR~aal~aGlp~~vp~~tVnr~C~SGl~Ai~~Aa 106 (399)
T PRK09052 27 KNTRPDDLLAHVLRAAVAQVPGLDPKLIEDAIVGCAMPEAEQGLNVARIGALLAGLPNSVGGVTVNRFCASGLQAVAMAA 106 (399)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHH
T ss_conf 88998999999999999865797989989799970644565566899999997599988871578651336899999999
No 297
>PRK13331 pantothenate kinase; Reviewed
Probab=35.54 E-value=24 Score=13.71 Aligned_cols=21 Identities=10% Similarity=0.290 Sum_probs=18.2
Q ss_pred EEEEECCCCEEEEEEEECCEE
Q ss_conf 699804866069999989955
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNV 24 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~ 24 (652)
.+-||.|+|+.+.++++++..
T Consensus 9 ~L~IDIGNT~ik~g~f~~~~l 29 (251)
T PRK13331 9 WLALMIGNSRLHWGYFSGETL 29 (251)
T ss_pred EEEEEECCCCEEEEEEECCEE
T ss_conf 799997644159999989998
No 298
>pfam06008 Laminin_I Laminin Domain I. coiled-coil structure. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure.
Probab=35.53 E-value=24 Score=13.71 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHHHHHHH----C--CCHHHHHHHHHHHHHHH
Q ss_conf 112456689999999989998999-----9999-9999999999999999987220----2--99899999999999999
Q gi|255764494|r 501 GLSSEDIEKMVKDAEMNAEMDKKR-----REAV-ETKNHAESLIYSTEQSLREHGD----K--IAEAEQKSIRESIDALR 568 (652)
Q Consensus 501 ~Ls~eei~~~~~eae~~~~~Dk~~-----re~~-eakN~lEs~iy~~~~~l~e~~~----k--lse~ek~~i~~~l~e~e 568 (652)
.++..++.+++.+|+.+-.+-+.+ +... ....+++.++..+++.+..... . .--+.....+..+.+++
T Consensus 118 ~~~~~~l~~~L~eA~~mL~eir~r~~~~~~~~Ae~el~~A~~LL~~v~~~~~~~~~~n~~l~~~l~~~L~~~~~kL~Dlr 197 (263)
T pfam06008 118 ALPGSALSRMLAEAQRMLGEIRERDFQKQLQNAEAELKAAEELLNRVQTWFQTPQEENEGLFEALRDDLNEYEAKLSDLR 197 (263)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68745599999999999999987585588877899999999999999998876776689999999999999988999999
Q ss_pred HHHHCC
Q ss_conf 987248
Q gi|255764494|r 569 TLLNDA 574 (652)
Q Consensus 569 ~wl~~~ 574 (652)
+||++.
T Consensus 198 ~~l~eA 203 (263)
T pfam06008 198 ELLDEA 203 (263)
T ss_pred HHHHHH
T ss_conf 999999
No 299
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=35.22 E-value=18 Score=14.72 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=6.0
Q ss_pred EEEEEEEECCCC
Q ss_conf 110146630785
Q gi|255764494|r 327 SDIDEVVLVGGM 338 (652)
Q Consensus 327 ~~I~~V~lvGGs 338 (652)
.+|..|+|.||-
T Consensus 7 ~~I~~vILAGGk 18 (196)
T PRK00560 7 DNIPCVILAGGK 18 (196)
T ss_pred CCCCEEEECCCC
T ss_conf 684089973787
No 300
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=35.09 E-value=25 Score=13.66 Aligned_cols=104 Identities=20% Similarity=0.319 Sum_probs=58.3
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 146542013322455213447665536787642013---43024478999999999988541155650358630443467
Q gi|255764494|r 209 GVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENG---IDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANS 285 (652)
Q Consensus 209 ~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~---~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~ 285 (652)
|+=+|.-|+|.+-|= .|+...+. ......+ +.+++|-. .|.+-++.+|.. .-....|++++
T Consensus 61 Gi~kvRlTGGEPLlR-~dl~~li~-----~l~~~~gi~~islTTNG~---lL~~~a~~Lk~a--GL~rvNISLDs----- 124 (329)
T PRK13361 61 GVRKIRLTGGEPLVR-TGCDQLVA-----RLGKLPGLEELSMTTNGS---RLARFAAELADA--GLKRLNISLDT----- 124 (329)
T ss_pred CCEEEEEECCCCCCC-CCHHHHHH-----HHHHCCCCCEEEEECCHH---HHHHHHHHHHHC--CCCEEEEECCC-----
T ss_conf 952899627882235-68899999-----986179977189966477---689999999977--99869973577-----
Q ss_pred CCCCEEEEEECCCCCCCCC-CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCC
Q ss_conf 8872126873110000123-4200001100111101013563110146630785
Q gi|255764494|r 286 AGAQHLNMKLTRAQFERLV-NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGM 338 (652)
Q Consensus 286 ~~g~d~~~~itR~~fe~l~-~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGs 338 (652)
+.++.|.++. .+-+.++.+-|+.|+ ++|+.+--|+.|++=|=.
T Consensus 125 ---------Ld~~~f~~ITr~~~l~~Vl~gI~aA~-~~G~~~VKiN~V~lrg~N 168 (329)
T PRK13361 125 ---------LNPDLFAALTRNGRLERVIAGIDAAK-AAGFERIKLNAVILRGQN 168 (329)
T ss_pred ---------CCHHHHHHHHCCCCHHHHHHHHHHHH-HCCCCEEEEEEEEECCCC
T ss_conf ---------99999997728997699999999999-779973889999836878
No 301
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=34.74 E-value=19 Score=14.44 Aligned_cols=45 Identities=22% Similarity=0.439 Sum_probs=31.0
Q ss_pred CCCEEEEEEEEC--CCCCCHHHHHHHHHHCCCC-----C--CCCCCCCCCHHHHHHH
Q ss_conf 563110146630--7853056778865410111-----1--1113565310111110
Q gi|255764494|r 324 LSPSDIDEVVLV--GGMTRMPKIQQSVQDFFNK-----S--PSKGVNPDEVVAMGAA 371 (652)
Q Consensus 324 ~~~~~I~~V~lv--GGssriP~v~~~i~~~fg~-----~--~~~~~npdeaVa~GAA 371 (652)
+..+.++.|+|. ||||.-| +.|...||+ + +..+.||+..-+..+.
T Consensus 450 vr~~g~t~vvl~GMGGSSLaP---EVia~tf~~~~g~P~L~VLDSTDP~~V~a~~~~ 503 (950)
T PRK09533 450 VKAQGFTDAVVLGMGGSSLGP---EVLAETFGQRDGFPKLHVLDSTDPAQVRALEAA 503 (950)
T ss_pred HHHCCCCEEEEECCCCCHHHH---HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHC
T ss_conf 986698769994787320409---999987233579970799659898999999854
No 302
>TIGR01198 pgl 6-phosphogluconolactonase; InterPro: IPR005900 6-phosphogluconolactonase (3.1.1.31 from EC) is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. 6-phospho-D-glucono-1,5-lactone + H2O = 6-phospho-D-gluconate. ; GO: 0017057 6-phosphogluconolactonase activity, 0006098 pentose-phosphate shunt.
Probab=34.71 E-value=19 Score=14.51 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=33.5
Q ss_pred CCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 1234200001100111101013563110146630785305677886541
Q gi|255764494|r 302 RLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQD 350 (652)
Q Consensus 302 ~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~ 350 (652)
++++.+.+++...+.+||++-+- -.|.|-||+|=+|+.+++-..
T Consensus 7 ~~~~~l~~~~~~~~~~Al~~~~~-----~~~alSGGr~p~~L~~~La~~ 50 (251)
T TIGR01198 7 ELAEALAERIATKLQKALAERGQ-----FLLALSGGRSPIALLEALAAQ 50 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC-----EEEEEECCCCHHHHHHHHHHH
T ss_conf 89999999999999999997689-----689982487457899997786
No 303
>pfam09861 DUF2088 Uncharacterized conserved protein (DUF2088). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.68 E-value=12 Score=15.96 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=39.3
Q ss_pred HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCC--------CCCCCHHHHHHH
Q ss_conf 001100111101013563110146630785305677886541011111113--------565310111110
Q gi|255764494|r 309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKG--------VNPDEVVAMGAA 371 (652)
Q Consensus 309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~--------~npdeaVa~GAA 371 (652)
.+++..+-+.|..+|+..++|. ++++-++.=|.-.+-+..++|.++... .|++..|-+|-.
T Consensus 71 ~~il~~ll~~L~~~Gv~~~~I~--iv~A~G~Hr~~t~eE~~~~lG~~i~~~~~v~~Hd~~d~~~lv~lG~T 139 (203)
T pfam09861 71 DIILPLLLEELNAVGIPDEDIT--ILVATGTHRPMTEEELKKILGEEVVKRIRIVNHDADDPDELVYLGTT 139 (203)
T ss_pred HHHHHHHHHHHHHCCCCCCCEE--EEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHCEEECCC
T ss_conf 7559999999997599812589--99826879999989999986088663868995799985783781207
No 304
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.51 E-value=17 Score=14.82 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=26.6
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-|...+--|||.+--|..+|-=.-+-+++||||.-
T Consensus 147 ~p~~LSGGqkqRVaiA~aLa~~P~iLilDEPTagL 181 (289)
T PRK13645 147 SPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGL 181 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 90109999999999999996399999995887648
No 305
>TIGR02707 butyr_kinase butyrate kinase; InterPro: IPR011245 This group represents bacterial butyrate kinase, an enzyme that facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate . The final steps in butyrate synthesis by anaerobic bacteria can occur via butyrate kinase and phosphotransbutyrylase or via butyryl-CoA:acetate CoA-transferase, the latter providing the dominant route for butyrate formation in human colonic bacteria .; GO: 0005524 ATP binding, 0047761 butyrate kinase activity, 0016310 phosphorylation, 0005737 cytoplasm.
Probab=34.49 E-value=23 Score=13.91 Aligned_cols=193 Identities=20% Similarity=0.337 Sum_probs=90.1
Q ss_pred EE-ECCCCC-CCHHHHHHHHHHHCCCCCCC---C---CCCHHHHHHHHH--CCC-CCCCEEEEEEECCCEEEEEEEEECC
Q ss_conf 85-377887-40257886344211222222---2---210247888860--344-5655079987244114543101023
Q gi|255764494|r 140 IT-VPAYFN-DAQRQATKDAGRIAGLDVLR---I---INEPTAAALAYG--LDK-KDARTVIVFDFGGGTFDVSLLEMGD 208 (652)
Q Consensus 140 it-VP~~f~-~~qR~a~~~Aa~~AGl~v~~---l---i~EptAAal~Y~--~~~-~~~~~vlV~D~Gggt~dvsi~~~~~ 208 (652)
+. ||||== +.==--+-+-||+.|++-+. + +|-- |+|=-|+ +.+ .++-+++|+-|||| +||....+
T Consensus 118 ~~diPafIVDPVVVDEledvARISG~P~i~RkSIfHALNqK-AvARr~A~e~gK~YE~~N~ivaHlGGG---ISvaAH~~ 193 (353)
T TIGR02707 118 LNDIPAFIVDPVVVDELEDVARISGLPEIERKSIFHALNQK-AVARRIAKELGKRYEEMNLIVAHLGGG---ISVAAHRK 193 (353)
T ss_pred CCCCCEEEECCCEECCCCCHHHHCCCCCCCCEEHHHHHHHH-HHHHHHHHHCCCCCCCCCEEEEECCCC---CEEEEECC
T ss_conf 18943588268335055101321388986411044443388-999999997289600445489982887---03414548
Q ss_pred CE-EEEE-CCCCCCCC-----CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 14-6542-01332245-----52134476655367876420134302447899999999998854115565035863044
Q gi|255764494|r 209 GV-FEVK-ATNGDTFL-----GGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFI 281 (652)
Q Consensus 209 ~~-~~vl-~~~gd~~l-----GG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~ 281 (652)
|. ++|- |-.|+--+ |+-=+- -|+++| |..||- -|..|+.++.+-=..- +|
T Consensus 194 Gr~vDVNNALdGeGPFSPERsG~LP~~-dlv~lC---ySGkyT----------------~~E~kKkI~G~GGl~a---yL 250 (353)
T TIGR02707 194 GRVVDVNNALDGEGPFSPERSGTLPLG-DLVDLC---YSGKYT----------------KEEMKKKIVGKGGLVA---YL 250 (353)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCHH-HHHHHH---HCCCHH----------------HHHHHHHHCCCCCCEE---EC
T ss_conf 617997347784329387545656588-899987---276103----------------8899998526745332---54
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCC---CHHHHHHC-CCCCCHH----CCCCCEEEEEEEECCCCCCHHH-HHHHHHHCC
Q ss_conf 3467887212687311000012342---00001100-1111010----1356311014663078530567-788654101
Q gi|255764494|r 282 SANSAGAQHLNMKLTRAQFERLVNH---LIQKTVEP-CKKCLQD----AGLSPSDIDEVVLVGGMTRMPK-IQQSVQDFF 352 (652)
Q Consensus 282 ~~~~~~g~d~~~~itR~~fe~l~~~---l~~~~~~~-i~~~L~~----a~~~~~~I~~V~lvGGssriP~-v~~~i~~~f 352 (652)
.. .|+. +.++.++. -...+.+. +-++=+. |-+=..+||.|+|+||-.+--. +-+.|.+..
T Consensus 251 GT-----nD~r------eV~~~I~~GD~kA~~ildAMaYQiAKeIG~mavVL~G~VDAI~LTGGlAys~~f~v~~I~~~v 319 (353)
T TIGR02707 251 GT-----NDAR------EVEKKIEAGDEKAKLILDAMAYQIAKEIGKMAVVLKGKVDAIILTGGLAYSKYFFVSEIRKRV 319 (353)
T ss_pred CC-----CCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEEEECCCHHCCCCHHHHHHHHCC
T ss_conf 55-----8888------999999731088999998654587567742504003726689854601306204558776133
Q ss_pred C----CCCCCCCCCCCHHHHHH
Q ss_conf 1----11111356531011111
Q gi|255764494|r 353 N----KSPSKGVNPDEVVAMGA 370 (652)
Q Consensus 353 g----~~~~~~~npdeaVa~GA 370 (652)
. ..+.-.-|=++|-+.||
T Consensus 320 ~fIAPv~vYPGEdEm~AL~~Ga 341 (353)
T TIGR02707 320 SFIAPVLVYPGEDEMEALAEGA 341 (353)
T ss_pred CEECCEEEECCCCHHHHHHCCC
T ss_conf 2103668825981899985264
No 306
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=34.40 E-value=12 Score=16.01 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-EECCCCCCC
Q ss_conf 199999999999999999983884733698-537788740
Q gi|255764494|r 111 SPSQISAIVLQKMKETAESFLGETVSKAVI-TVPAYFNDA 149 (652)
Q Consensus 111 ~peei~a~iL~~lk~~ae~~l~~~v~~~Vi-tVP~~f~~~ 149 (652)
++.++...-...-...|-- ....|+.+++ +.|..|...
T Consensus 29 s~~eL~~eA~~~Al~DAGl-~~~dID~~~~g~~~~~~~g~ 67 (393)
T PRK06065 29 TPQELAWEAARQALDEAGL-ELKDIDCVVIGSAPDAFDGV 67 (393)
T ss_pred CHHHHHHHHHHHHHHHCCC-CHHHCCEEEEECCCCCCCCC
T ss_conf 9999999999999998499-98998999995567654543
No 307
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=34.29 E-value=19 Score=14.55 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=30.0
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 33698537788740257886344211222222221024788
Q gi|255764494|r 136 SKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 136 ~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.+..-..|...+.-|||.+--|..++.=.-+=+++|||++-
T Consensus 127 ~~~~~~~~~~LSGGq~QRvaiAraL~~~P~lLllDEPt~~L 167 (240)
T PRK09493 127 AERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSAL 167 (240)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 24662987728999999999998773599999990887668
No 308
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=34.27 E-value=18 Score=14.65 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=25.2
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 7788740257886344211222222221024788
Q gi|255764494|r 143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
|...+--|||.+--|-.+|.=.-+=|++|||++-
T Consensus 139 p~~LSGGq~QRvaIArAL~~~P~iLllDEPTs~L 172 (227)
T cd03260 139 ALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172 (227)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 0228999999999999983599999968987657
No 309
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.13 E-value=15 Score=15.20 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=28.0
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-|..++--|||.+--|..+|.=.-+-+++||||.-
T Consensus 134 ~~~~LSGGqkqRvaiA~aL~~~P~lLlLDEPtagL 168 (277)
T PRK13652 134 VPHHLSGGEKKRVAIAGILAMEPQVLVLDEPTAGL 168 (277)
T ss_pred CHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 95448999999999999998299999983974548
No 310
>PRK10744 phosphate transporter subunit; Provisional
Probab=33.95 E-value=20 Score=14.31 Aligned_cols=35 Identities=23% Similarity=0.127 Sum_probs=25.0
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-|..++--|||.+--|..+|.=.-+-|++|||++-
T Consensus 150 ~~~~LSGGqkQRvaiArAL~~~P~vLllDEPts~L 184 (257)
T PRK10744 150 SGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSAL 184 (257)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 74558988989999987775199988877885536
No 311
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=33.91 E-value=17 Score=14.89 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=34.8
Q ss_pred CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 42000011001111010135631101466307853056778865410111111
Q gi|255764494|r 305 NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPS 357 (652)
Q Consensus 305 ~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~ 357 (652)
+-.+......++++|++++++++|||.+++-=++-+ +.+.+.+.+|.+..
T Consensus 222 ~~~~~~~~~~i~~~l~~~g~~~~did~~v~HQ~~~~---~~~~i~~~lgl~~~ 271 (327)
T CHL00203 222 KFAVFQVPAVIQECLNALNISIDEVDWLLLHQANQR---ILEAVADRLSIPHS 271 (327)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHH---HHHHHHHHHCCCHH
T ss_conf 999999999999999876998111887998868899---99999998197978
No 312
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.84 E-value=18 Score=14.70 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=26.6
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-|...+--|||.+--|..+|.=.-+=+++|||++-
T Consensus 129 ~p~~LSGGqkQRVaIA~aLa~~P~iLllDEPTs~L 163 (276)
T PRK13634 129 SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 163 (276)
T ss_pred CHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 90018999999999999997299989976985427
No 313
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=33.74 E-value=19 Score=14.45 Aligned_cols=35 Identities=11% Similarity=0.030 Sum_probs=26.1
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-|..++.-|||.+--|..++.=.-+-+++|||++.
T Consensus 140 ~~~~LSgGqkqrl~lA~al~~~P~iLiLDEPts~L 174 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 55347999999999999995699999995987548
No 314
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=33.64 E-value=19 Score=14.56 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=28.9
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8537788740257886344211222222221024788
Q gi|255764494|r 140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
=..|...+--|||.+--|-.+|.=.-+-|.+|||+|-
T Consensus 135 ~~~p~~LSGGqkQRV~IArALa~~P~iLl~DEPTsaL 171 (343)
T PRK11153 135 DSYPANLSGGQKQRVAIARALASNPKVLLCDEATSAL 171 (343)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 1975118999999999999986699999992887658
No 315
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=33.53 E-value=20 Score=14.30 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=22.5
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.|..++.-|||.+.-|..++.=..+-+++|||++-
T Consensus 142 ~~~~lSGGqkqRv~iaral~~~P~lllLDEPtsgL 176 (248)
T PRK09580 142 VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGL 176 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 45578988999999999997689989997962239
No 316
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=33.46 E-value=16 Score=15.03 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=27.5
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8537788740257886344211222222221024788
Q gi|255764494|r 140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
=..|...+--|+|.+--|-.++.=..+=|.+||||+-
T Consensus 131 ~~~p~~LSGGqkQRvaIARALv~~P~ill~DEPT~~L 167 (214)
T cd03292 131 RALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167 (214)
T ss_pred CCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 4994248889999999999997299999983987877
No 317
>PRK13322 pantothenate kinase; Reviewed
Probab=33.40 E-value=26 Score=13.47 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=16.7
Q ss_pred EEEEECCCCEEEEEEEECCE
Q ss_conf 69980486606999998995
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKN 23 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~ 23 (652)
++-||.|||+.+.+++.++.
T Consensus 2 ~LlIDiGNT~ik~~l~~~~~ 21 (252)
T PRK13322 2 ILELDCGNSRLKWRVTDNAG 21 (252)
T ss_pred EEEEEECCCCEEEEEEECCC
T ss_conf 89999863612999998996
No 318
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=33.29 E-value=20 Score=14.36 Aligned_cols=38 Identities=21% Similarity=0.111 Sum_probs=25.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 98537788740257886344211222222221024788
Q gi|255764494|r 139 VITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 139 VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
+-.-|..++.-|||.+--|-.++.=.-+-+++|||++-
T Consensus 133 ~~~~~~~LSgGqkQrv~lARal~~~p~ililDEpts~L 170 (221)
T cd03244 133 VEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASV 170 (221)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 03666779999999999999996599999997975679
No 319
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=33.28 E-value=26 Score=13.46 Aligned_cols=130 Identities=27% Similarity=0.397 Sum_probs=64.4
Q ss_pred EEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 79995795871999999999999999999838847336985377887402578863442112222222210247888860
Q gi|255764494|r 101 AWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG 180 (652)
Q Consensus 101 ~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~ 180 (652)
-.|.++|+..+++++...+. .++...... . .+-|.|| ++ -||+|+.|
T Consensus 86 ERI~ing~~Isd~~~~~~~~-~ve~~~~~~---~-----~~~~T~F-----------------E~------~Ta~Af~~- 132 (427)
T COG0285 86 ERIRINGEPISDEELAAAFE-RVEEAAGSL---D-----LISLTYF-----------------EV------LTAMAFLY- 132 (427)
T ss_pred EEEEECCEECCHHHHHHHHH-HHHHHHCCC---C-----CCCCCHH-----------------HH------HHHHHHHH-
T ss_conf 17999999888999999999-999975236---6-----6787479-----------------99------99999999-
Q ss_pred CCCCCCCEEEEEEEC-CCEEEEE-EEEECCCEEEEECCCC---CCCCCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHH
Q ss_conf 344565507998724-4114543-1010231465420133---22455213447665536787642013--430244789
Q gi|255764494|r 181 LDKKDARTVIVFDFG-GGTFDVS-LLEMGDGVFEVKATNG---DTFLGGEDFDSCLVEHICDTFKKENG--IDLKQDTLA 253 (652)
Q Consensus 181 ~~~~~~~~vlV~D~G-ggt~dvs-i~~~~~~~~~vl~~~g---d~~lGG~d~D~~l~~~~~~~~~~~~~--~d~~~~~~a 253 (652)
+.+.+--++|+-.| ||-+|.+ |+. ..+.|+.+-| -..||. .+-. |+.-=+.-|+...- +.-...+.+
T Consensus 133 -F~~~~vD~aIlEVGLGGRlDATNVi~---p~vsvIT~I~lDH~~~LG~-tie~-IA~EKAGI~k~g~P~v~~~~~~p~a 206 (427)
T COG0285 133 -FAEAKVDVAILEVGLGGRLDATNVIE---PDVSVITSIGLDHTAFLGD-TLES-IAREKAGIIKAGKPAVIGEQQPPEA 206 (427)
T ss_pred -HHHCCCCEEEEECCCCCCCCCHHCCC---CCEEEECCCCHHHHHHHCC-CHHH-HHHHHHCCCCCCCCEEECCCCCHHH
T ss_conf -97689998999605566644322168---7668976647257888686-6999-9998640125799579888898789
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 9999999998854115
Q gi|255764494|r 254 LQRLKEAAEKAKIELS 269 (652)
Q Consensus 254 ~~rL~~~~e~aK~~LS 269 (652)
+..+.+.|++....+.
T Consensus 207 ~~vi~~~a~~~~~~~~ 222 (427)
T COG0285 207 LNVIAERAEELGAPLF 222 (427)
T ss_pred HHHHHHHHHHCCCCEE
T ss_conf 9999999875189746
No 320
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.25 E-value=18 Score=14.69 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=28.3
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|...+--|||.+--|+.+|.=.-+-+++||||.-
T Consensus 134 ~~p~~LSGGqkqRvaiA~aL~~~P~lliLDEPtagL 169 (273)
T PRK13647 134 KAPYHLSYGQKKRVAIAGVLAMEPDIIVLDEPMAYL 169 (273)
T ss_pred CCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 793339998999999999998199999997976579
No 321
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.21 E-value=19 Score=14.46 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=27.5
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|...+--|||.+--|..+|-=.-+=+++|||++-
T Consensus 138 ~~p~~LSGGqkQRvaiAraL~~~P~iLilDEPTs~L 173 (269)
T PRK13648 138 YEPNALSGGQKQRVAIASVLALNPSVIILDEATSML 173 (269)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 896438999999999999997598999981875548
No 322
>pfam05378 Hydant_A_N Hydantoinase/oxoprolinase N-terminal region. This family is found at the N-terminus of the pfam01968 family.
Probab=33.12 E-value=26 Score=13.44 Aligned_cols=17 Identities=41% Similarity=0.597 Sum_probs=13.0
Q ss_pred EEEECCCCEEEEEEEEC
Q ss_conf 99804866069999989
Q gi|255764494|r 5 IGIDLGTTNSCVAIMDG 21 (652)
Q Consensus 5 iGIDlGtt~s~va~~~~ 21 (652)
||||.|-||+=+.++++
T Consensus 2 iGIDvGGTfTD~V~~d~ 18 (175)
T pfam05378 2 IGIDVGGTFTDAVALDE 18 (175)
T ss_pred EEEECCCCCEEEEEEEC
T ss_conf 58975757688999979
No 323
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.99 E-value=21 Score=14.15 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=27.9
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8537788740257886344211222222221024788
Q gi|255764494|r 140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
=.-|.-++--|||.+--|-.+|.=.-+=|.+|||++-
T Consensus 135 ~~yP~eLSGGq~QRVaIARAL~~~P~lllaDEPTs~L 171 (233)
T cd03258 135 DAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSAL 171 (233)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 2696526778889999999983399899965976646
No 324
>PRK08223 hypothetical protein; Validated
Probab=32.93 E-value=26 Score=13.42 Aligned_cols=52 Identities=29% Similarity=0.427 Sum_probs=30.9
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEE
Q ss_conf 3698537788740257886344211222222221024788886034456550799872441145
Q gi|255764494|r 137 KAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFD 200 (652)
Q Consensus 137 ~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~d 200 (652)
++||-.--+|.-.-|..+-+||...|...+ +||.+.| +..++||+=||-+|+
T Consensus 119 DvVvDg~DnF~~~tR~ll~~ac~~~giP~v------~~a~l~f------~gq~~vF~P~g~~f~ 170 (287)
T PRK08223 119 DVYVDGLDFFVFDIRRLLFREAQARGIPAL------TAAPLGF------STAWLVFDPGGMSFD 170 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEE------EECCCCC------CCEEEEECCCCCCHH
T ss_conf 999979667883189999999998599849------8315410------306999889997898
No 325
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=32.87 E-value=18 Score=14.68 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=26.8
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|..++--|||.+.-|..++.=.-+=|++|||++-
T Consensus 147 ~~p~~LSGG~~QRv~iAraL~~~P~llllDEPtsgL 182 (258)
T PRK11701 147 DLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGL 182 (258)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 062214789999999999986499999985986568
No 326
>PRK04311 selenocysteine synthase; Provisional
Probab=32.71 E-value=20 Score=14.30 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=11.1
Q ss_pred EECCCCCCHHHHHHHHH
Q ss_conf 63078530567788654
Q gi|255764494|r 333 VLVGGMTRMPKIQQSVQ 349 (652)
Q Consensus 333 ~lvGGssriP~v~~~i~ 349 (652)
+=+|||-|||-|-+.-.
T Consensus 178 vEIGGsFRiPdim~~sG 194 (465)
T PRK04311 178 VEIGGAFRIPDVMRQAG 194 (465)
T ss_pred EEECCCCCCHHHHHHCC
T ss_conf 65267656278998659
No 327
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.63 E-value=27 Score=13.38 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=38.2
Q ss_pred EEEEEECCCCCCCHHHHHHHHH-HHCCCCCCCCCCCHHHHHHHHHCCCCCC-CEEEEEEECCCEEEE
Q ss_conf 3698537788740257886344-2112222222210247888860344565-507998724411454
Q gi|255764494|r 137 KAVITVPAYFNDAQRQATKDAG-RIAGLDVLRIINEPTAAALAYGLDKKDA-RTVIVFDFGGGTFDV 201 (652)
Q Consensus 137 ~~VitVP~~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAal~Y~~~~~~~-~~vlV~D~Gggt~dv 201 (652)
+.|.++|..+. ..+.+|. +..|++.+..-||..|+..|-|.-+... --+++.-.|-|.+..
T Consensus 20 ~~vFGipG~~~----~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~N~ 82 (572)
T PRK08979 20 KHIFGYPGGSV----LDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATNA 82 (572)
T ss_pred CEEEECCCCCH----HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
T ss_conf 99997577137----9999998753898298118689999999999999799889998267379999
No 328
>PRK12578 acetyl-CoA acetyltransferase; Provisional
Probab=32.63 E-value=12 Score=15.90 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=29.1
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 87199999999999999999983884733698537788740257886344211222
Q gi|255764494|r 109 QYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLD 164 (652)
Q Consensus 109 ~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~ 164 (652)
..++.|+.+.-++...+.|-- -...|+.+++.-..+....+- .-...+..+||.
T Consensus 18 ~~s~~eL~~eA~~~Al~dAgl-~~~dVD~v~~G~~~~~g~~~~-~~~~~a~~~Gl~ 71 (385)
T PRK12578 18 DVSIQELAWESIKEALEDAGI-TQKDVDLVVIGSTAYRGVELY-PAPPVSEYSGLT 71 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHCC-CHHHCCEEEEECCCCCCCCCC-HHHHHHHHCCCC
T ss_conf 979999999999999998492-989959999945675552236-289999975998
No 329
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=32.51 E-value=25 Score=13.66 Aligned_cols=171 Identities=23% Similarity=0.312 Sum_probs=77.4
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHH-----HH----CCCCCCCEEEEEEEC------CCEEEE
Q ss_conf 369853778874025788634421122222222102478888-----60----344565507998724------411454
Q gi|255764494|r 137 KAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALA-----YG----LDKKDARTVIVFDFG------GGTFDV 201 (652)
Q Consensus 137 ~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~-----Y~----~~~~~~~~vlV~D~G------ggt~dv 201 (652)
+|||++|-=.+..-+.-|+. -|=+ +|-=||||+.. |+ |.+.-+.-+=+.|== -.+++-
T Consensus 90 k~Iiv~PeKmS~eKv~VL~A----lGAE---ivrtPT~a~~d~PeSh~gVa~rL~~EiPga~KIlDQY~N~~NP~aHY~~ 162 (527)
T TIGR01137 90 KCIIVLPEKMSEEKVDVLKA----LGAE---IVRTPTAAAFDSPESHIGVAKRLVREIPGAHKILDQYANPSNPLAHYDG 162 (527)
T ss_pred EEEEECCCCCCHHHHHHHHH----HCCE---EEECCCCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 39998687546147899998----1980---7787888788848652048885222788843352004788786101341
Q ss_pred E---EEEECCC-----EEE-EECCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3---1010231-----465-420133224552134476655367876420---134302447899999999998854115
Q gi|255764494|r 202 S---LLEMGDG-----VFE-VKATNGDTFLGGEDFDSCLVEHICDTFKKE---NGIDLKQDTLALQRLKEAAEKAKIELS 269 (652)
Q Consensus 202 s---i~~~~~~-----~~~-vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~---~~~d~~~~~~a~~rL~~~~e~aK~~LS 269 (652)
| |.+-.+| .+. +.|+.|. ||. |. =+.+||.++-.-+ -|.|+..+--| + =+.|.
T Consensus 163 Tg~Ei~~q~EGlnlfdk~~~~VAg~GT---GGT-It-Gi~ryLK~~~~~~~~ivGaDP~GSila------~----pE~LN 227 (527)
T TIGR01137 163 TGPEILEQCEGLNLFDKLDMFVAGVGT---GGT-IT-GIARYLKDESNPKVRIVGADPEGSILA------Q----PEELN 227 (527)
T ss_pred CHHHHHHHHCCCCHHCCCCEEEECCCC---CCH-HH-HHHHHHHHCCCCCEEEEEECCCCCEEC------C----CCCCC
T ss_conf 058999860573012121178850578---831-55-455654321389338998769853321------7----64655
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCC----CCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHH
Q ss_conf 565035863044346788721268731100001234----2000011001111010135631101466307853056778
Q gi|255764494|r 270 STSQTEINLPFISANSAGAQHLNMKLTRAQFERLVN----HLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQ 345 (652)
Q Consensus 270 ~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~----~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~ 345 (652)
....++..||++.+|+.. .-+.|.-..++++ +-|.-+..+|. + +=+||||||=+-.+-
T Consensus 228 ~t~~t~Y~VEGiGyDF~P-----~vlDR~v~D~w~k~~D~~SF~maRrLi~----e---------EGlLvGGS~GsAvva 289 (527)
T TIGR01137 228 KTGRTPYKVEGIGYDFIP-----TVLDRKVVDEWIKTDDKESFKMARRLIK----E---------EGLLVGGSSGSAVVA 289 (527)
T ss_pred CCCCCCEEEEEECCCCCC-----CCCCCCCCCEEEEECCHHHHHHHHHHHH----H---------CCEEEECCHHHHHHH
T ss_conf 578983148762147768-----5237652544688088168999999987----4---------472640430358999
Q ss_pred HH
Q ss_conf 86
Q gi|255764494|r 346 QS 347 (652)
Q Consensus 346 ~~ 347 (652)
-+
T Consensus 290 al 291 (527)
T TIGR01137 290 AL 291 (527)
T ss_pred HH
T ss_conf 99
No 330
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.46 E-value=19 Score=14.48 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=27.8
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8537788740257886344211222222221024788
Q gi|255764494|r 140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
=.-|...+--|||.+--|+.+|-=.-+-+++||||+-
T Consensus 138 ~~~p~~LSGGqkQRvaiA~aLa~~P~iliLDEPTs~L 174 (273)
T PRK13632 138 KKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSML 174 (273)
T ss_pred HCCCHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 4782009999999999999997199999980775569
No 331
>PRK06363 consensus
Probab=32.44 E-value=13 Score=15.64 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-CC-CCCCCHHHHHHHHHHHCCCC
Q ss_conf 19999999999999999998388473369853-77-88740257886344211222
Q gi|255764494|r 111 SPSQISAIVLQKMKETAESFLGETVSKAVITV-PA-YFNDAQRQATKDAGRIAGLD 164 (652)
Q Consensus 111 ~peei~a~iL~~lk~~ae~~l~~~v~~~VitV-P~-~f~~~qR~a~~~Aa~~AGl~ 164 (652)
++.++....++.....|.- -...|+.+++.- .. .|.. |...-...+..+||.
T Consensus 21 s~~~L~~ea~~~Al~dAgl-~~~dID~v~~g~~~~~~~~~-~~~~~~~~a~~~Gl~ 74 (387)
T PRK06363 21 SFRDLIVEAGIKAIEDANV-SGEDIDAMYVGNMSGGRFVG-QEHIGALIADYAGLN 74 (387)
T ss_pred CHHHHHHHHHHHHHHHCCC-CHHHCCEEEEEECCCCCCCC-CCCHHHHHHHHCCCC
T ss_conf 9899999999999998097-98999999998257543446-130999999973998
No 332
>KOG2697 consensus
Probab=32.40 E-value=27 Score=13.36 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=12.3
Q ss_pred HHHHHHHCCCCCEEEEEECC
Q ss_conf 99885411556503586304
Q gi|255764494|r 261 AEKAKIELSSTSQTEINLPF 280 (652)
Q Consensus 261 ~e~aK~~LS~~~~~~i~i~~ 280 (652)
.-.||..+-+..++-++|+.
T Consensus 221 VTAAKM~vQNd~~AlvsIDm 240 (446)
T KOG2697 221 VTAAKMIVQNDYEALVSIDM 240 (446)
T ss_pred HHHHHHHEECCCCCEEEECC
T ss_conf 53535412246130478516
No 333
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=32.29 E-value=17 Score=14.84 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=28.8
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|..++--|||.+--|..+++=..+-|++||||.-
T Consensus 129 ~~~~~LSgG~~qrv~iAraL~~~P~illlDEPt~GL 164 (232)
T cd03218 129 SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGV 164 (232)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 942559999999999999996699999988985688
No 334
>pfam03841 SelA L-seryl-tRNA selenium transferase.
Probab=32.16 E-value=27 Score=13.33 Aligned_cols=41 Identities=24% Similarity=0.473 Sum_probs=23.1
Q ss_pred CEEEEEEECCCEE-EEEEEEE--CC-------CEEEEECCCCCCCCCCHHH
Q ss_conf 5079987244114-5431010--23-------1465420133224552134
Q gi|255764494|r 187 RTVIVFDFGGGTF-DVSLLEM--GD-------GVFEVKATNGDTFLGGEDF 227 (652)
Q Consensus 187 ~~vlV~D~Gggt~-dvsi~~~--~~-------~~~~vl~~~gd~~lGG~d~ 227 (652)
+..+++|+|.|++ |.+-..+ ++ .-..+...+||.-|||-.-
T Consensus 170 ~ip~i~DlGSG~l~d~~~~gl~~Ep~v~~~l~~GaDlV~FSGDKLLGGPQA 220 (367)
T pfam03841 170 GLPVYYDLGSGSLVDLSQYGLPKEPTVQELLALGVDLVSFSGDKLLGGPQA 220 (367)
T ss_pred CCCEEEECCCCCEECCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCC
T ss_conf 996799758663112200179999989999973998899867645689853
No 335
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.07 E-value=18 Score=14.78 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=28.5
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-+..++.-|||.+--|..+++=.-+-+++|||+..
T Consensus 127 ~~~~~LS~G~kqrv~ia~Al~~~P~lliLDEPt~gL 162 (220)
T cd03265 127 RLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGL 162 (220)
T ss_pred CHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 704347999999999999985699989980886688
No 336
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=31.93 E-value=27 Score=13.30 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=39.1
Q ss_pred HHCCCCCCHHCCCCCEEEEEEEECCCCCC------HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 10011110101356311014663078530------567788654101111111356531011111000223
Q gi|255764494|r 312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTR------MPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGV 376 (652)
Q Consensus 312 ~~~i~~~L~~a~~~~~~I~~V~lvGGssr------iP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ 376 (652)
...++..+.-+.+.+++-+.|.+.||--- -+.++++|..+.... -|--+|+.|.|..+..
T Consensus 78 ~~~L~~t~~l~~v~~~~YdaVf~pGGhG~m~Dl~~~~~l~~ll~~~~~~g-----k~vaaVCHGpaaLl~~ 143 (231)
T cd03147 78 WKKLKNIKKADEVNPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANG-----GVVAAVCHGPAILANL 143 (231)
T ss_pred HHHHHCCCCHHHCCHHHCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC-----CEEEEECCHHHHHHHC
T ss_conf 99986768956889878259998898853032423999999999999759-----9799980688997616
No 337
>pfam00005 ABC_tran ABC transporter. ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Probab=31.88 E-value=22 Score=14.00 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=24.2
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 377887402578863442112222222210247
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA 174 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA 174 (652)
-|..++--|||.+.-|..+++=.-+-|++||||
T Consensus 87 ~~~~LSGG~~qrv~iAral~~~p~iLilDEPTs 119 (119)
T pfam00005 87 PVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119 (119)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 755499999999999999973999999708999
No 338
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=31.87 E-value=27 Score=13.30 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=6.2
Q ss_pred EECCCCCCCHHHHHHH
Q ss_conf 5377887402578863
Q gi|255764494|r 141 TVPAYFNDAQRQATKD 156 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~ 156 (652)
..|..++..|-..+++
T Consensus 96 GTPslL~~~~l~~ll~ 111 (416)
T COG0635 96 GTPSLLSPEQLERLLK 111 (416)
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 8326779999999999
No 339
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.82 E-value=28 Score=13.29 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=15.1
Q ss_pred EEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf 0146630785305--6778865410111
Q gi|255764494|r 329 IDEVVLVGGMTRM--PKIQQSVQDFFNK 354 (652)
Q Consensus 329 I~~V~lvGGssri--P~v~~~i~~~fg~ 354 (652)
+++++|-|||-|| |-||+.+-+..|.
T Consensus 477 lNG~ElggGSiRIh~~eiQ~~vF~~lg~ 504 (585)
T COG0173 477 LNGYELGGGSIRIHDPEIQEKVFEILGI 504 (585)
T ss_pred ECCEEECCCEEEECCHHHHHHHHHHCCC
T ss_conf 6027513543640788999999998199
No 340
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=31.75 E-value=26 Score=13.43 Aligned_cols=30 Identities=33% Similarity=0.369 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHCCCC--CCCCCCCHHHHH
Q ss_conf 88740257886344211222--222221024788
Q gi|255764494|r 145 YFNDAQRQATKDAGRIAGLD--VLRIINEPTAAA 176 (652)
Q Consensus 145 ~f~~~qR~a~~~Aa~~AGl~--v~~li~EptAAa 176 (652)
.|+--||||+.-+ +|.+. -+-|++|.|||-
T Consensus 148 lLSGGQRQalsL~--MAtl~~pkiLLLDEHTAAL 179 (263)
T COG1101 148 LLSGGQRQALSLL--MATLHPPKILLLDEHTAAL 179 (263)
T ss_pred HCCCHHHHHHHHH--HHHCCCCCEEEECCHHHCC
T ss_conf 2365189999999--9854798488760112117
No 341
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=31.64 E-value=22 Score=13.99 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=27.3
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-.|...+--|||.+.-|-.+|.=.-+=+++|||++-
T Consensus 148 ~~p~~LSGGq~QRv~IAraL~~~P~lLllDEPts~L 183 (257)
T PRK10619 148 KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSAL 183 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 587558999999999999986399899976886658
No 342
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=31.52 E-value=22 Score=13.97 Aligned_cols=35 Identities=23% Similarity=0.133 Sum_probs=26.0
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-|...+--|||.+.-|..++.=..+-|++|||++-
T Consensus 135 ~~~~LSGGqkQRv~iAraL~~~p~lllLDEPtsgL 169 (255)
T PRK11231 135 RLTELSGGQRQRAFLAMVLAQDTPVVLLDEPTTYL 169 (255)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 74529999999999999995399979983886448
No 343
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=31.49 E-value=19 Score=14.43 Aligned_cols=35 Identities=23% Similarity=0.182 Sum_probs=25.8
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.|...+.-|||.+.-|..++.=.-+-|++|||++-
T Consensus 144 ~~~~LSGGq~QRv~iAraL~~~P~lLlLDEPts~L 178 (265)
T PRK10575 144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSAL 178 (265)
T ss_pred CHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 83338999999999999875699989981776558
No 344
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=31.44 E-value=22 Score=14.02 Aligned_cols=33 Identities=15% Similarity=-0.013 Sum_probs=23.2
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 778874025788634421122222222102478
Q gi|255764494|r 143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
|..++--|||.+.-|..++.=.-+-+++|||++
T Consensus 140 ~~~LSgG~kqRl~iA~al~~~P~illLDEPt~g 172 (224)
T cd03220 140 VKTYSSGMKARLAFAIATALEPDILLIDEVLAV 172 (224)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 654699999999999999669999999188665
No 345
>TIGR01068 thioredoxin thioredoxin; InterPro: IPR005746 Thioredoxins , , , are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. TR-S_2 + NADPH + H^+ -> TR-(SH)_2 + NADP^+ (1) trx-S_2 + TR-(SH)_2 -> trx-(SH)_2 + TR-S_2 (2) Protein-S_2 + trx-(SH)_2 -> Protein-(SH)_2 + trx-S_2 (3) In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide (steps 1 and 2). Reduced thioredoxin then directly reduces the disulphide in the substrate protein (step 3) . Protein disulphide isomerase (PDI), a resident foldase of the endoplasmic recticulum, is a multi-functional protein that catalyses the formation and isomerisation of disulphide bonds during protein folding , . PDI contains 2 redox active domains, near the N- and C-termini, that are similar to thioredoxin: both contribute to disulphide isomerase activity, but are functionally non-equivalent . Interestingly, a mutant PDI, with all 4 of the active cysteines replaced by serine, displays a low but detectable level of disulphide isomerase activity . Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity . A number of endoplasmic reticulum proteins that differ from the PDI major isozyme contain 2 (ERp60, ERp5) or 3 (ERp72 ) thioredoxin domains; all of them seem to be PDIs. 3D-structures have been determined for a number of thioredoxins . The molecule has a doubly-wound alternating alpha/beta fold, consisting of a 5-stranded parallel beta-sheet core, enclosed by 4 alpha-helices. The active site disulphide is located at the N-terminus of helix 2 in a short segment that is separated from the rest of the helix by a kink caused by a conserved proline. The 4-membered disulphide ring is located on the surface of the protein. A flat hydrophobic surface lies adjacent to the disulphide, which presumably facilitates interaction with other proteins. One invariant feature of all thioredoxins is a cis-proline located in a loop preceding beta-strand 4. This residue is positioned in van der Waals contact with the active site cysteines and is important both for stability and function . Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase . Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0006662 glycerol ether metabolic process, 0045454 cell redox homeostasis.
Probab=31.30 E-value=28 Score=13.23 Aligned_cols=25 Identities=36% Similarity=0.630 Sum_probs=13.9
Q ss_pred CCCCCCCCEEEEEECCCC---EEECHHHH
Q ss_conf 898625627999948998---99667898
Q gi|255764494|r 30 AEGTRTTPSMVGFTDEGE---RLVGQPAK 55 (652)
Q Consensus 30 ~~g~r~~PS~V~~~~~~~---~~vG~~A~ 55 (652)
..|=|.+||++-|. +|+ |.||..-+
T Consensus 63 ~ygi~SIPTl~lFK-~G~~V~~~vGa~pK 90 (101)
T TIGR01068 63 KYGIRSIPTLLLFK-NGKVVDRSVGALPK 90 (101)
T ss_pred HCCCCCCCEEEEEC-CCEEEEEEECCCCH
T ss_conf 52854056377751-98252006135697
No 346
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=31.27 E-value=20 Score=14.26 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=26.3
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 7788740257886344211222222221024788
Q gi|255764494|r 143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
|...+--|||.+--|..++.=.-+=|++||||+-
T Consensus 129 ~~~LSGGq~Qrv~iAraL~~~P~lLlLDEPt~gL 162 (230)
T TIGR03410 129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGI 162 (230)
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 1119999999999999996299889993852269
No 347
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=30.96 E-value=26 Score=13.43 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=26.6
Q ss_pred HHHHCCCCCCHHCCCCCEEEEEE-EECCCCCCHHHHHHHHHHCCCC
Q ss_conf 01100111101013563110146-6307853056778865410111
Q gi|255764494|r 310 KTVEPCKKCLQDAGLSPSDIDEV-VLVGGMTRMPKIQQSVQDFFNK 354 (652)
Q Consensus 310 ~~~~~i~~~L~~a~~~~~~I~~V-~lvGGssriP~v~~~i~~~fg~ 354 (652)
.+++-|..+|+.+|.+++||-.+ +.+-.....|.+.+...++|+.
T Consensus 48 ~~l~ni~~iL~~aG~~~~dvvk~tvyltd~~~~~~~~~v~~~~f~~ 93 (119)
T cd06154 48 QCLEIIEAALAEAGASLEDVVRTRMYVTDIADFEAVGRAHGEVFGD 93 (119)
T ss_pred HHHHHHHHHHHHCCCCHHHHEEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 9999999999986998778156667856888999999999987699
No 348
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=30.95 E-value=19 Score=14.45 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=26.9
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|..++--|||.+--|..++.=.-+-|++|||++-
T Consensus 129 ~~p~~LSGGqkQRvaiAraL~~~P~lLlLDEPtsgL 164 (257)
T PRK11247 129 EWPAALSGGQKQRVALARALIHRPRLLLLDEPLGAL 164 (257)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 694448999999999999984599999980987657
No 349
>PRK13328 pantothenate kinase; Reviewed
Probab=30.91 E-value=28 Score=13.18 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=17.9
Q ss_pred EEEEECCCCEEEEEEEECCEE
Q ss_conf 699804866069999989955
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNV 24 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~ 24 (652)
++=||.|||+.++++++++..
T Consensus 3 ~L~IDiGNT~ik~~~~~~~~~ 23 (255)
T PRK13328 3 ILLIDAGNSRIKWAWADAGRP 23 (255)
T ss_pred EEEEEECCCCEEEEEEECCEE
T ss_conf 999997624159999979987
No 350
>PTZ00107 hexokinase; Provisional
Probab=30.87 E-value=28 Score=13.18 Aligned_cols=29 Identities=31% Similarity=0.634 Sum_probs=22.1
Q ss_pred CCCCEEEEEEECCCEEEEEEEEEC-CCEEE
Q ss_conf 565507998724411454310102-31465
Q gi|255764494|r 184 KDARTVIVFDFGGGTFDVSLLEMG-DGVFE 212 (652)
Q Consensus 184 ~~~~~vlV~D~Gggt~dvsi~~~~-~~~~~ 212 (652)
.+.+.++-+|+||..|-|..+.+. +|.++
T Consensus 93 ~E~G~fLALDLGGTNfRV~~V~L~G~g~~~ 122 (485)
T PTZ00107 93 KEKGSYYAIDFGGSNFRAVRISIDGDGKME 122 (485)
T ss_pred CEEEEEEEECCCCCCEEEEEEEEECCCCEE
T ss_conf 635799999248884799999995898436
No 351
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=30.86 E-value=21 Score=14.10 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=27.1
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|..++--|||.+--|-.++.=.-+=|++|||++-
T Consensus 138 ~~p~~LSGGq~QRvaiAraL~~~P~iLllDEPTs~L 173 (248)
T PRK11264 138 SYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSAL 173 (248)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 780108999988999876314799999987987658
No 352
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.69 E-value=22 Score=14.08 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=27.1
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 3778874025788634421122222222102478
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
-|..++--|||.+--|+.+++=.-+-+++|||+.
T Consensus 127 ~~~~LSgG~kqrv~ia~al~~~P~lliLDEPt~g 160 (211)
T cd03264 127 KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAG 160 (211)
T ss_pred CHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 5445898899999999998289999999489767
No 353
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=30.53 E-value=20 Score=14.39 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=26.1
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-|...+--|||.+.-|..++.=.-+-|++|||++-
T Consensus 136 ~~~~LSGGq~QRvaIAraL~~~P~iLlLDEPTs~L 170 (255)
T cd03236 136 NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYL 170 (255)
T ss_pred CHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 85558999999999999736899999997987658
No 354
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.46 E-value=26 Score=13.53 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=26.9
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8537788740257886344211222222221024788
Q gi|255764494|r 140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
=.-|...+--|||.+.-|-.+|.=.-+=|.+|||++-
T Consensus 139 ~~~~~~LSGGq~QRVaIARAL~~~P~ill~DEPts~L 175 (241)
T cd03256 139 YQRADQLSGGQQQRVAIARALMQQPKLILADEPVASL 175 (241)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 6784414802899999999985599989962876658
No 355
>pfam07066 Phage_Lacto_M3 Lactococcus phage M3 protein. This family consists of several Lactococcus phage middle-3 (M3) proteins of around 160 residues in length. The function of this family is unknown.
Probab=30.44 E-value=29 Score=13.13 Aligned_cols=13 Identities=46% Similarity=0.744 Sum_probs=11.9
Q ss_pred CCCEEEEECCCCE
Q ss_conf 9816998048660
Q gi|255764494|r 1 MSKVIGIDLGTTN 13 (652)
Q Consensus 1 Ms~viGIDlGtt~ 13 (652)
|++++.|||-|.+
T Consensus 1 mkk~laidfstan 13 (162)
T pfam07066 1 MKKALAIDFSTAN 13 (162)
T ss_pred CCCEEEEEEECCC
T ss_conf 9713888631256
No 356
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=30.30 E-value=22 Score=13.97 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=27.9
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 53778874025788634421122222222102478
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
..|...+--|||.+.-|..+|.=.-+-|++|||++
T Consensus 140 ~~~~~LSGGq~QRv~iAraL~~~P~iLlLDEPtsg 174 (269)
T PRK11831 140 LMPSELSGGMARRAALARAIALEPDLIMFDEPFVG 174 (269)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 88231899999999999999759999998287567
No 357
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=30.19 E-value=22 Score=13.98 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=26.4
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
--|...+.-|||.+.-|..+|.=.-+-|++||||+-
T Consensus 139 ~~~~~LSGGq~QRv~iAraL~~~P~illLDEPts~L 174 (265)
T PRK10253 139 QSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWL 174 (265)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 881019988999999999985699989981887668
No 358
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=30.19 E-value=14 Score=15.54 Aligned_cols=55 Identities=16% Similarity=-0.003 Sum_probs=33.0
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 871999999999999999999838847336985377887402578863442112222
Q gi|255764494|r 109 QYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDV 165 (652)
Q Consensus 109 ~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v 165 (652)
..+|.|+.+..++...+.+-- -...|+.++++....+.. +..--+.++..+|+..
T Consensus 13 ~~s~~eL~~~a~~~Al~dagi-~~~~ID~v~~g~~~~~~~-~~~~~~~~a~~~G~~~ 67 (375)
T cd00829 13 DRSPLELAAEAARAALDDAGL-EPADIDAVVVGNAAGGRF-QSFPGALIAEYLGLLG 67 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHCC-CHHHHCEEEEEECCCCCC-CCHHHHHHHHHCCCCC
T ss_conf 969999999999999998391-989949999991287553-4769999999829999
No 359
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=30.15 E-value=29 Score=13.09 Aligned_cols=65 Identities=14% Similarity=0.056 Sum_probs=40.1
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC-EEEEEEECCCEEEE
Q ss_conf 369853778874025788634421122222222102478888603445655-07998724411454
Q gi|255764494|r 137 KAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDAR-TVIVFDFGGGTFDV 201 (652)
Q Consensus 137 ~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~-~vlV~D~Gggt~dv 201 (652)
+.|.+||..+.-.=-.++..+-+..+++.+..-||-.|+..|-|.-+...+ -+++.-.|-|.+..
T Consensus 25 ~~vFGvPG~~~l~l~d~l~~~~~~~~i~~v~~rhE~~A~~aAdgYAR~tGk~gv~~~t~GpG~~Na 90 (588)
T CHL00099 25 KHIFGYPGGAILPIYDELYAWEKQGLIKHILVRHEQGAAHAADAYARSTGKVGVCFATSGPGATNL 90 (588)
T ss_pred CEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
T ss_conf 899982786548999999843536896287129789999999999999699989998037789999
No 360
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=30.07 E-value=21 Score=14.17 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=27.1
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|..++--|||.+.-|..++.=.-+-+++||||+-
T Consensus 149 ~~~~~LSgGq~Qrv~iAraL~~~P~lLlLDEPt~gL 184 (255)
T PRK11300 149 RQAGNLAYGQQRRLEIARCMVTQPRILMLDEPAAGL 184 (255)
T ss_pred CCHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 884667948899999999997299969981875469
No 361
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=30.03 E-value=24 Score=13.76 Aligned_cols=35 Identities=34% Similarity=0.299 Sum_probs=24.8
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-|...+.-|||.+--|..++.=.-+=|++|||++-
T Consensus 142 ~p~~LSGGq~QRv~iAraL~~~P~iLllDEPTs~L 176 (228)
T cd03257 142 YPHELSGGQRQRVAIARALALNPKLLIADEPTSAL 176 (228)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 86327988999999821104799999994887647
No 362
>KOG1504 consensus
Probab=29.97 E-value=29 Score=13.07 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHH--HHCCCCCC----CCCCCCCCHHHHHH
Q ss_conf 466307853056778865--41011111----11356531011111
Q gi|255764494|r 331 EVVLVGGMTRMPKIQQSV--QDFFNKSP----SKGVNPDEVVAMGA 370 (652)
Q Consensus 331 ~V~lvGGssriP~v~~~i--~~~fg~~~----~~~~npdeaVa~GA 370 (652)
.|.-||-+-.+ +..++ ...||... -+.++||.-+..-|
T Consensus 192 kvawiGD~NNv--lhs~mia~ak~gih~s~atPkg~e~d~div~~a 235 (346)
T KOG1504 192 KVAWIGDGNNV--LHSWMIAAAKFGIHFSCATPKGYEPDKDIVSKA 235 (346)
T ss_pred EEEEECCCCHH--HHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHH
T ss_conf 79997265088--999999863314378852899988566899999
No 363
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=29.95 E-value=23 Score=13.95 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=23.8
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 7788740257886344211222222221024788
Q gi|255764494|r 143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
|...+--|||.+.-|..+|.=.-+-|++||||+-
T Consensus 113 ~~~LSGGqkQRv~iA~aL~~~p~ilLLDEPts~L 146 (246)
T cd03237 113 VPELSGGELQRVAIAACLSKDADIYLLDEPSAYL 146 (246)
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 0028985999999999984199999984898768
No 364
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=29.87 E-value=21 Score=14.15 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=24.7
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-|...+--|||.+.-|-.++.=.-+-+++||||+.
T Consensus 94 ~~~~LSGGqkQrv~iA~aL~~~P~ililDEPts~L 128 (180)
T cd03214 94 PFNELSGGERQRVLLARALAQEPPILLLDEPTSHL 128 (180)
T ss_pred CHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 91037999999999999998689647885875447
No 365
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.72 E-value=21 Score=14.22 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=24.5
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
--|...+--|||.+--|-.++.=..+=|++||||+-
T Consensus 124 ~~p~~LSGGqkQRvaiARAL~~~P~ilLlDEPts~L 159 (211)
T cd03298 124 RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAAL 159 (211)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 894558989999999999986599999971887655
No 366
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=29.67 E-value=25 Score=13.58 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 7788740257886344211222222221024788
Q gi|255764494|r 143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
+..++.-|||.+--|-.++-=..+-+++|||+|-
T Consensus 138 g~~LSGGQ~QRi~iARal~~~~~illlDEptsaL 171 (218)
T cd03290 138 GINLSGGQRQRICVARALYQNTNIVFLDDPFSAL 171 (218)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 8877989999999999984489999998965578
No 367
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=29.64 E-value=25 Score=13.58 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=26.7
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
..|.-++--|||.+.-|-.++.=.-+=+.+|||+|-
T Consensus 150 ryP~eLSGGq~QRv~IArAL~~~P~lLi~DEPTsaL 185 (327)
T PRK11308 150 RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSAL 185 (327)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 576447999999999999984289899984786546
No 368
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=29.63 E-value=29 Score=13.11 Aligned_cols=37 Identities=30% Similarity=0.195 Sum_probs=31.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8537788740257886344211222222221024788
Q gi|255764494|r 140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
=..|--|+--|||.+.-|..+|.=.-+-+.+|||.|.
T Consensus 149 ~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaL 185 (539)
T COG1123 149 DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTAL 185 (539)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 2487226704999999999983799989977985410
No 369
>pfam00195 Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain. The C-terminal domain of Chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in this N-terminal domain.
Probab=29.53 E-value=24 Score=13.79 Aligned_cols=62 Identities=19% Similarity=0.268 Sum_probs=42.0
Q ss_pred HHHCCCCCCHHCCCCCEEEEEEEECCCC-CCHHHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHH
Q ss_conf 1100111101013563110146630785-3056778865410111111---135653101111100
Q gi|255764494|r 311 TVEPCKKCLQDAGLSPSDIDEVVLVGGM-TRMPKIQQSVQDFFNKSPS---KGVNPDEVVAMGAAI 372 (652)
Q Consensus 311 ~~~~i~~~L~~a~~~~~~I~~V~lvGGs-sriP~v~~~i~~~fg~~~~---~~~npdeaVa~GAA~ 372 (652)
..+.+.++|+++|+.++||+.++.|-=+ ...|.+--.|.+.+|-.+. ..++..=|.+-.+++
T Consensus 106 a~~Aa~~AL~~aG~~~~dIthlv~vt~TG~~~Pg~d~~l~~~LGL~~~v~R~~i~~~GC~gg~~gL 171 (228)
T pfam00195 106 GKEAALKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRVMLYQQGCFAGGTVL 171 (228)
T ss_pred HHHHHHHHHHHHCCCHHHCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCHHEEEECCCCHHHHHHH
T ss_conf 999999999995889889999999947999887478999998298987211141145416489999
No 370
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=29.52 E-value=24 Score=13.72 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=26.0
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 7788740257886344211222222221024788
Q gi|255764494|r 143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
|..++--|||.+.-|..++.=.-+-|++|||++.
T Consensus 135 ~~~LSgG~~Qrv~iAraL~~~P~lLlLDEPt~gL 168 (237)
T PRK11614 135 AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168 (237)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 2348998859999999985699999995975579
No 371
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.52 E-value=26 Score=13.47 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=26.9
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
--|...+--|||.+.-|..++.=.-+-+++|||++-
T Consensus 126 ~~~~~LSGG~kQrv~iAraL~~~P~illlDEPt~gL 161 (213)
T cd03259 126 RYPHELSGGQQQRVALARALAREPSLLLLDEPLSAL 161 (213)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 770338989999999987622799999983986437
No 372
>PRK11178 uridine phosphorylase; Provisional
Probab=29.41 E-value=29 Score=13.09 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=17.1
Q ss_pred CCCCEEE---EEEEECCCCCCHHHHHHHHHH
Q ss_conf 3563110---146630785305677886541
Q gi|255764494|r 323 GLSPSDI---DEVVLVGGMTRMPKIQQSVQD 350 (652)
Q Consensus 323 ~~~~~~I---~~V~lvGGssriP~v~~~i~~ 350 (652)
+++++|| +.|+|+|-.-|...|.+.+.+
T Consensus 8 ~~~~~di~~a~~vil~GDP~Rv~~iA~~ld~ 38 (251)
T PRK11178 8 GLTKNDLQGATLAIVPGDPERVEKIAELMDN 38 (251)
T ss_pred CCCHHHCCCCCEEEECCCHHHHHHHHHHCCC
T ss_conf 7884442688889967998999999996189
No 373
>PRK04262 hypothetical protein; Provisional
Probab=29.15 E-value=25 Score=13.57 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=33.6
Q ss_pred HHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 00011001111010135631101466307853056778865410111
Q gi|255764494|r 308 IQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK 354 (652)
Q Consensus 308 ~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~ 354 (652)
+..+...++++|++++++++|||.+++--...||+ +.+.+.+|.
T Consensus 208 ~~~~~~~~~~~l~~~g~~~~did~~v~HQAn~rii---~~~~k~Lgi 251 (346)
T PRK04262 208 FKHIISAAKGLMEKLGTKPSDYDYAVFHQPNGKFP---LRAAKMLGF 251 (346)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEECCCCCHHHH---HHHHHHCCC
T ss_conf 99999999999998299978858895167657899---999998299
No 374
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=29.13 E-value=22 Score=14.00 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 874025788634421122222222102478
Q gi|255764494|r 146 FNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 146 f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
.+--|||.+--|..++.=..+-+++|||++
T Consensus 112 LSgGqrqRv~iA~aL~~~P~illlDEPTsg 141 (194)
T cd03213 112 LSGGERKRVSIALELVSNPSLLFLDEPTSG 141 (194)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 888999999999999639988999489878
No 375
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=29.09 E-value=30 Score=12.97 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=30.8
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCC-CCCCHHHHHHHHHHHCCCC
Q ss_conf 58719999999999999999998388473369853--778-8740257886344211222
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAY-FNDAQRQATKDAGRIAGLD 164 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~-f~~~qR~a~~~Aa~~AGl~ 164 (652)
+.++|.+|.+..++.+.+.+. .-...|+++++.+ |.. -....|++ +-.|||.
T Consensus 33 ~~~~~~~L~a~~ik~~l~r~~-i~p~~Id~Vi~G~v~~~~~g~n~AR~a----aL~aGlp 87 (436)
T PRK08963 33 HGVPAVDLGKMVVGELLARSE-IDPKLIEQLVFGQVVQMPEAPNIAREI----VLGTGMN 87 (436)
T ss_pred CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCCCCCHHHHHH----HHHCCCC
T ss_conf 889989999999999999829-898999989998367567677299999----9975999
No 376
>KOG2912 consensus
Probab=29.08 E-value=18 Score=14.61 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=8.3
Q ss_pred CCCEEE--EEEECCCE
Q ss_conf 655079--98724411
Q gi|255764494|r 185 DARTVI--VFDFGGGT 198 (652)
Q Consensus 185 ~~~~vl--V~D~Gggt 198 (652)
.++..+ =+|+|-|+
T Consensus 98 ~~k~~i~~GiDIgtga 113 (419)
T KOG2912 98 SDKSTIRRGIDIGTGA 113 (419)
T ss_pred CCCCCEEEEEECCCCH
T ss_conf 7876166302026753
No 377
>PRK11636 mrcA peptidoglycan synthetase; Provisional
Probab=29.06 E-value=30 Score=12.96 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=28.8
Q ss_pred EEECHHHHHHHHHHHH---------HHHHHHHHCCCCCEE----------EEEECCCCCC
Q ss_conf 5871999999999999---------999999838847336----------9853778874
Q gi|255764494|r 108 KQYSPSQISAIVLQKM---------KETAESFLGETVSKA----------VITVPAYFND 148 (652)
Q Consensus 108 ~~~~peei~a~iL~~l---------k~~ae~~l~~~v~~~----------VitVP~~f~~ 148 (652)
+.||-+||+.++|+.+ ...|+.|+|.++.+. .+--|..|++
T Consensus 152 ~~~sK~eILe~YLN~iyfG~~ayGV~aAA~~YFgK~~~eLtl~EaA~LAgl~qaPs~y~P 211 (850)
T PRK11636 152 QLLTKDEILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLSEMAVIAGLPKAPSTFNP 211 (850)
T ss_pred HHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 865999999998545367896288999999986888010999999999844679877896
No 378
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.92 E-value=24 Score=13.78 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=26.9
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
--|...+--|||.+--|+.+|.=.-+=+++||||.-
T Consensus 141 ~~p~~LSGGqkqRvaiA~aLa~~P~iLlLDEPTsgL 176 (286)
T PRK13641 141 KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGL 176 (286)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 291329999999999999997499999973973438
No 379
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.91 E-value=25 Score=13.64 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=24.2
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-+..++.-|||.+--|-.+..=..+-+++||||+-
T Consensus 135 ~~g~~LSgGq~Qri~lARal~~~~~illlDEpts~L 170 (229)
T cd03254 135 ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNI 170 (229)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 786449999999999999995189989998977789
No 380
>pfam02543 CmcH_NodU Carbamoyltransferase. This family consists of NodU from Rhizobium and CmcH from Nocardia lactamdurans. NodU a Rhizobium nodulation protein involved in the synthesis of nodulation factors has 6-O-carbamoyltransferase-like activity. CmcH is involved in cephamycin (antibiotic) biosynthesis and has 3-hydroxymethylcephem carbamoyltransferase activity, EC:2.1.3.7 catalysing the reaction: Carbamoyl phosphate + 3-hydroxymethylceph-3-EM-4-carboxylate <= phosphate + 3-carbamoyloxymethylcephem.
Probab=28.84 E-value=18 Score=14.68 Aligned_cols=48 Identities=21% Similarity=0.129 Sum_probs=29.8
Q ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCCCCC-CCCHHHHHHHHCCCCCC
Q ss_conf 46630785305677886541011-11111356-53101111100022346
Q gi|255764494|r 331 EVVLVGGMTRMPKIQQSVQDFFN-KSPSKGVN-PDEVVAMGAAIQAGVLQ 378 (652)
Q Consensus 331 ~V~lvGGssriP~v~~~i~~~fg-~~~~~~~n-pdeaVa~GAA~~a~~ls 378 (652)
.+.|.||...-=..-..|.+..+ +.+...-+ .|.-.|.|||+++....
T Consensus 166 nlclaGGvaLN~~aN~~i~~~~~~~~ifV~Pa~~D~G~aiGAA~~~~~~~ 215 (360)
T pfam02543 166 NLCIAGGVALNVKWNSKLRRRGLFDDVWVPPAMNDSGSALGAALLAKVQL 215 (360)
T ss_pred EEEEECHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 18970709999999998886177766031789885156799999999985
No 381
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=28.62 E-value=25 Score=13.59 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 88740257886344211222222221024788
Q gi|255764494|r 145 YFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 145 ~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.++.-|||.+.-|..++.=.-+-|++|||++-
T Consensus 150 ~LSGGqkqRv~iaral~~~P~iLiLDEPTsgL 181 (252)
T CHL00131 150 GFSGGEKKRNEILQMALLDSKLAILDETDSGL 181 (252)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 57899999999999996399999997987669
No 382
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=28.61 E-value=26 Score=13.54 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8740257886344211222222221024788
Q gi|255764494|r 146 FNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 146 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.+.-|||.+.-|..++.=..+-|++||||+-
T Consensus 72 LSGGqrQRv~iAral~~~p~lllLDEPts~L 102 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 7989999999999982399999974886538
No 383
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=28.53 E-value=22 Score=14.10 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=26.2
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
..|...+.-|||.+.-|..+|.=.-+=|++||||+-
T Consensus 148 ~~~~~LSGGqkQRv~IArAL~~~P~iLllDEPta~L 183 (262)
T PRK09984 148 QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASL 183 (262)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 985348999999999999997199999983886779
No 384
>PRK13542 consensus
Probab=28.52 E-value=25 Score=13.66 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=21.3
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 53778874025788634421122222222102478
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
.-+..++.-|||.+.-|+.++.=..+-|++||||.
T Consensus 143 ~~~~~LSgGqrqRv~lA~al~~~p~illLDEPtag 177 (224)
T PRK13542 143 APARTLSQGQRRRVALARLALTPRALWLLDEPLTS 177 (224)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 88124999999999999998079988997385354
No 385
>KOG1159 consensus
Probab=28.42 E-value=31 Score=12.90 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=10.8
Q ss_pred EEEEEEECCCEEEEEEEEECCC-EEEEECC
Q ss_conf 0799872441145431010231-4654201
Q gi|255764494|r 188 TVIVFDFGGGTFDVSLLEMGDG-VFEVKAT 216 (652)
Q Consensus 188 ~vlV~D~Gggt~dvsi~~~~~~-~~~vl~~ 216 (652)
..+.||+-. |-.++..| ++.++-.
T Consensus 217 R~~~F~i~~-----s~~~~epGDvl~l~P~ 241 (574)
T KOG1159 217 RLFEFDIPD-----SYEEFEPGDVLSLLPS 241 (574)
T ss_pred EEEEEECCC-----CCCCCCCCCEEEEECC
T ss_conf 589985588-----6553268877998158
No 386
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.02 E-value=28 Score=13.23 Aligned_cols=35 Identities=14% Similarity=0.372 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCHHEECCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 02234675221000023566532223342024663389811
Q gi|255764494|r 373 QAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTI 413 (652)
Q Consensus 373 ~a~~ls~~~~~~~~~dv~p~slgie~~~~~~~~ii~~~~~i 413 (652)
-+.++.|.++-+.++.++||+|...- .++|.++.+
T Consensus 193 GGPIv~P~~~~~~ltPI~PhsL~~Rp------lVl~~~s~I 227 (290)
T PRK01911 193 GGPIIVPHSNNFVITPIAPHSLNVRP------LVIPDDTEI 227 (290)
T ss_pred CCCEECCCCCCEEEEECCCCCCCCCC------EEECCCCEE
T ss_conf 99555698760899755766467998------898999879
No 387
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=28.01 E-value=26 Score=13.52 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=25.1
Q ss_pred EEECC-CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 85377-88740257886344211222222221024788
Q gi|255764494|r 140 ITVPA-YFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 140 itVP~-~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
+.-|+ ..+.-|||.+--|-.++.=..+-|++|||++-
T Consensus 131 ~~~~~~~LSGGqkQRv~iARaL~~~p~iLllDEPts~L 168 (225)
T PRK10247 131 LTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSAL 168 (225)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 61881118999999999999986099999995976668
No 388
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=27.85 E-value=32 Score=12.82 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 78874025788634421122222222102478
Q gi|255764494|r 144 AYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 144 ~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
+.++.-|||.+.-|..++.=..+-+++|||+.
T Consensus 69 ~QLSgGqkqr~~la~al~~~p~iliLDEPt~~ 100 (144)
T cd03221 69 EQLSGGEKMRLALAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 00799999999999997259989999577555
No 389
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=27.85 E-value=29 Score=13.12 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=27.8
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|..++.-|||.+.-|..+++=.-+-+++|||+.-
T Consensus 132 ~~~~~LS~G~kqrv~la~al~~~P~lliLDEPt~gL 167 (218)
T cd03266 132 RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGL 167 (218)
T ss_pred CCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 443227826889999999986699899997987676
No 390
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=27.69 E-value=22 Score=13.97 Aligned_cols=36 Identities=31% Similarity=0.224 Sum_probs=27.0
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
..|.-++--|||.+.-|..++.=.-+=+.+|||+|-
T Consensus 149 ~yP~eLSGGq~QRV~IArAL~~~P~lLIaDEPTsaL 184 (327)
T PRK11022 149 VYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTAL 184 (327)
T ss_pred CCHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 285546999999999999997099999983887657
No 391
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.66 E-value=22 Score=14.01 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=23.8
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
--|...+.-|||.+--|-.++.=.-+-|++|||+|-
T Consensus 127 ~~P~~LSGGq~QRVaiARAL~~~P~llLlDEP~saL 162 (214)
T cd03297 127 RYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 897779929999999999987199999980887666
No 392
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=27.61 E-value=23 Score=13.84 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=26.1
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-|..++--|||.+.-|..++.=.-+-|++||||+-
T Consensus 129 ~~~~LSgG~~Qrv~iAraL~~~P~lllLDEPt~gL 163 (222)
T cd03224 129 LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL 163 (222)
T ss_pred CHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 45448999999999999996499999993865479
No 393
>PRK05790 acetyl-CoA acetyltransferase; Provisional
Probab=27.38 E-value=22 Score=13.96 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=33.2
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 587199999999999999999983884733698537788740257886344211222
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLD 164 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~ 164 (652)
+.++|++|.+..++.+.+.+. .-...|.++++..=......+ ..-+.++..|||.
T Consensus 22 ~~~~~~~L~~~ai~~~l~r~g-i~~~~Id~vi~G~~~~~g~g~-n~aR~~~l~aGlp 76 (393)
T PRK05790 22 KDVSAVELGAIVIKAALERAG-VPPEQVDEVIMGQVLQAGAGQ-NPARQAAIKAGLP 76 (393)
T ss_pred CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCCCCC-HHHHHHHHHCCCC
T ss_conf 889999999999999999829-898999989999336566555-4999999967999
No 394
>PRK06689 consensus
Probab=27.37 E-value=32 Score=12.76 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=30.7
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--ECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 5871999999999999999999838847336985--37788740257886344211222
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVIT--VPAYFNDAQRQATKDAGRIAGLD 164 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~Vit--VP~~f~~~qR~a~~~Aa~~AGl~ 164 (652)
+.++|++|.+..++.+.+... .-...|+++++. +|.- + +-.--|.|+-.|||.
T Consensus 22 ~~~~~~~L~a~~i~~~l~r~g-i~p~~Id~vi~G~~~~~g--~-~~n~AR~aaL~aGlp 76 (391)
T PRK06689 22 KNVTPVELAVPVLQEAVKRGG-VEPHEVDEVILGHCIQRT--D-EANTARTAALAAGFP 76 (391)
T ss_pred CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCC--C-CCCHHHHHHHHCCCC
T ss_conf 889889999999999998749-997998989998066766--6-660999999976999
No 395
>KOG1394 consensus
Probab=27.29 E-value=16 Score=15.15 Aligned_cols=45 Identities=31% Similarity=0.460 Sum_probs=31.1
Q ss_pred HHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHH--HHHHHCCCC
Q ss_conf 011001111010135631101466307853056778--865410111
Q gi|255764494|r 310 KTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQ--QSVQDFFNK 354 (652)
Q Consensus 310 ~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~--~~i~~~fg~ 354 (652)
...-.++++|++|++.|+||+.|-----||-.--.. +.|...|+.
T Consensus 302 Ga~~am~raL~~Agl~pe~i~YvNAHATST~~GD~aE~~Ai~~vf~~ 348 (440)
T KOG1394 302 GAVLAMERALKDAGLSPEDIDYVNAHATSTPLGDAAEAEAIKRVFGE 348 (440)
T ss_pred HHHHHHHHHHHHCCCCHHHCCEEECCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 58999999998749995655705303335767308999999998414
No 396
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=27.26 E-value=23 Score=13.87 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=27.3
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
..|..++--|||.+.-|..++.=.-+-|++||||+-
T Consensus 133 ~~~~~LSgG~kqrv~iAraL~~~P~illLDEPt~gL 168 (241)
T PRK10895 133 SMGQSLSGGERRRVEIARALAANPKFILLDEPFAGV 168 (241)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 106668988899999999996699889995875479
No 397
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=27.21 E-value=27 Score=13.35 Aligned_cols=37 Identities=24% Similarity=0.218 Sum_probs=27.9
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8537788740257886344211222222221024788
Q gi|255764494|r 140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-.-|..++--|||.+.-|..+|.=.-+-+.+|||++.
T Consensus 163 ~r~p~~LSGGqrQRV~IA~ALa~~P~lLIlDEPTs~L 199 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTAL 199 (623)
T ss_pred HCCCHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 3281113699999999999874188658855774343
No 398
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=27.15 E-value=17 Score=14.90 Aligned_cols=50 Identities=20% Similarity=0.135 Sum_probs=27.2
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCCCC-CCHHHHHHHHHHH
Q ss_conf 719999999999999999998388473369853--77887-4025788634421
Q gi|255764494|r 110 YSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAYFN-DAQRQATKDAGRI 160 (652)
Q Consensus 110 ~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~f~-~~qR~a~~~Aa~~ 160 (652)
..+.|+.+..++.+.+.+.- -...|+.+|+.. |.... ...|++.+.|.-.
T Consensus 21 ~~a~eL~~~ai~~al~~agi-~~~~Id~vi~G~~~~~g~g~n~ar~~~l~ag~~ 73 (393)
T cd00826 21 DLAHEAGAKAIAAALEPAGV-AAGAVEEACLGQVLGAGEGQNCAQQAAMHAGGL 73 (393)
T ss_pred CCHHHHHHHHHHHHHHHHCC-CHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCC
T ss_conf 99999999999999998296-989989899992587555541999999975999
No 399
>pfam02803 Thiolase_C Thiolase, C-terminal domain. Thiolase is reported to be structurally related to beta-ketoacyl synthase (pfam00109), and also chalcone synthase.
Probab=27.06 E-value=19 Score=14.46 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=18.9
Q ss_pred HHCCCCCCHHCCCCCEEEEEEEECCCCC
Q ss_conf 1001111010135631101466307853
Q gi|255764494|r 312 VEPCKKCLQDAGLSPSDIDEVVLVGGMT 339 (652)
Q Consensus 312 ~~~i~~~L~~a~~~~~~I~~V~lvGGss 339 (652)
...++++|++++++.+|||.+++-=-.+
T Consensus 25 ~~A~~~lL~r~gl~~~Did~~EinEAFA 52 (123)
T pfam02803 25 AYAIPKALKKAGLTVNDIDLFEINEAFA 52 (123)
T ss_pred HHHHHHHHHHCCCCHHHCCEEEECHHHH
T ss_conf 9999999998299855466456414567
No 400
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=27.01 E-value=26 Score=13.52 Aligned_cols=37 Identities=30% Similarity=0.231 Sum_probs=27.6
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8537788740257886344211222222221024788
Q gi|255764494|r 140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-..|..++--|||.+.-|-.++.=.-+=+.+|||+|-
T Consensus 156 ~~yP~eLSGGq~QRV~IArAL~~~P~lLI~DEPTsaL 192 (330)
T PRK09473 156 KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTAL 192 (330)
T ss_pred HCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 3481533988999999999997099999973875547
No 401
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=26.91 E-value=25 Score=13.58 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=26.6
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8537788740257886344211222222221024788
Q gi|255764494|r 140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-.-|..++--|||.+.-|..+|-=.-+=+++||||+-
T Consensus 163 ~~~~~~LSgGqkQrv~IA~aL~~~P~lLilDEPTa~L 199 (520)
T TIGR03269 163 THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTL 199 (520)
T ss_pred CCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 0073559999978899999984599899970763357
No 402
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=26.78 E-value=25 Score=13.66 Aligned_cols=36 Identities=25% Similarity=0.192 Sum_probs=27.5
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|...+--|||.+--|..+|.=.-+-|++|||++-
T Consensus 124 ~~p~~LSGGqkQRVaiArAL~~~P~iLllDEPt~~L 159 (255)
T PRK11248 124 RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL 159 (255)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 893349999999999999997299999980887779
No 403
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=26.70 E-value=25 Score=13.56 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=23.4
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 778874025788634421122222222102478
Q gi|255764494|r 143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
|..++.-|||.+.-|..++.=..+-+++|||++
T Consensus 127 ~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~ 159 (204)
T PRK13538 127 ARQLSAGQQRRVALARLWLTRAPLWILDEPFTA 159 (204)
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 224899999999999999609998999788657
No 404
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=26.65 E-value=27 Score=13.33 Aligned_cols=36 Identities=19% Similarity=0.061 Sum_probs=25.6
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|...+.-|+|.+--|..+|.=..+=+++|||++-
T Consensus 136 ~~P~qLSGGq~QRvaiArAL~~~P~lLilDEPTs~L 171 (254)
T PRK10418 136 LYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDL 171 (254)
T ss_pred HCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 192634879999999999985499989855875437
No 405
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=26.63 E-value=28 Score=13.28 Aligned_cols=37 Identities=27% Similarity=0.261 Sum_probs=25.8
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8537788740257886344211222222221024788
Q gi|255764494|r 140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
=.-|...+--|+|.+--|-.+|.=.-+=|.+|||++-
T Consensus 130 ~~~P~~LSGGqqQRVAIARALa~~P~ilL~DEPts~L 166 (213)
T cd03262 130 DAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSAL 166 (213)
T ss_pred CCCHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 4994446929999999999963799999970888877
No 406
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=26.61 E-value=32 Score=12.81 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=22.1
Q ss_pred ECCCCCCCHHHHHHHHHHHC-CCCC-CCCCCCHHHHH
Q ss_conf 37788740257886344211-2222-22221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIA-GLDV-LRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~A-Gl~v-~~li~EptAAa 176 (652)
-|..++--|||.+.-|..++ ..+. +-+++||||+-
T Consensus 134 ~~~~LSGGq~QRv~iAraL~~~~~~~lliLDEPTsgL 170 (226)
T cd03270 134 SAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGL 170 (226)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 3786899999999999999738987168832873337
No 407
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase; InterPro: IPR004639 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamate-1-semialdehyde (GSA) aminotransferase (5.4.3.8 from EC), which catalyse a transamination reaction to produce 5-aminoaevulinic acid during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme has a high degree of similarity to amino acid transaminases, and is classed as a class III aminotransferase.; GO: 0042286 glutamate-1-semialdehyde 21-aminomutase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=26.57 E-value=30 Score=13.01 Aligned_cols=49 Identities=27% Similarity=0.415 Sum_probs=23.1
Q ss_pred CCC--CCCCCCCCHHHH---H--HHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCE
Q ss_conf 122--222222102478---8--8860344565507998724411454310102314
Q gi|255764494|r 161 AGL--DVLRIINEPTAA---A--LAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGV 210 (652)
Q Consensus 161 AGl--~v~~li~EptAA---a--l~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~ 210 (652)
... +-+|+||..|=| | ||-|+. ..++.|=|-=+=||+-|.=+++-..|.
T Consensus 102 ~~~t~e~vRfVnSGTEATMsAvRLARG~T-GR~~IiKFeGcYHGh~D~lLv~AGSGa 157 (434)
T TIGR00713 102 PSVTEEMVRFVNSGTEATMSAVRLARGFT-GRDKIIKFEGCYHGHHDALLVKAGSGA 157 (434)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCC-CCCCEEEECCCCCCCHHHHCCCCCCHH
T ss_conf 55546516862176488999999863105-887278861764101232003545210
No 408
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.50 E-value=24 Score=13.71 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=25.0
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
--|...+--|||.+--|-.+|-=.-+-|++||||+-
T Consensus 132 ~~p~eLSGGq~QRVaiARAl~~~P~vlllDEP~s~L 167 (239)
T cd03296 132 RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 167 (239)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 896669998989999999876499989973886646
No 409
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772 This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=26.43 E-value=15 Score=15.20 Aligned_cols=60 Identities=22% Similarity=0.270 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEE
Q ss_conf 99999999885411556503586304434678872126873110000123420000110011110101356311014663
Q gi|255764494|r 255 QRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVL 334 (652)
Q Consensus 255 ~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~l 334 (652)
.|+.++.|++-..-. +.+.+ .. |=+-||+|..|.++|+.++.+-+ . -=+-
T Consensus 229 kKfvdEI~~L~r~hg----VgfF~---LA------DEePT~Nr~~f~efCEe~Iar~l------------~-----~~v~ 278 (506)
T TIGR02026 229 KKFVDEIEKLVREHG----VGFFI---LA------DEEPTVNRKKFQEFCEELIARNL------------Q-----IKVT 278 (506)
T ss_pred CHHHHHHHHHHHHCC----CCEEE---EC------CCCCCCCHHHHHHHHHHHHHCCC------------C-----EEEE
T ss_conf 138999999986318----53366---32------78873016899999999985789------------5-----6999
Q ss_pred CCCCCCHHHH
Q ss_conf 0785305677
Q gi|255764494|r 335 VGGMTRMPKI 344 (652)
Q Consensus 335 vGGssriP~v 344 (652)
.||+||+-=|
T Consensus 279 ~ginTRv~Di 288 (506)
T TIGR02026 279 WGINTRVTDI 288 (506)
T ss_pred EEEEECCCHH
T ss_conf 9651113042
No 410
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=26.40 E-value=30 Score=12.99 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHCCCCC--CCCCCCHHHHH
Q ss_conf 7887402578863442112222--22221024788
Q gi|255764494|r 144 AYFNDAQRQATKDAGRIAGLDV--LRIINEPTAAA 176 (652)
Q Consensus 144 ~~f~~~qR~a~~~Aa~~AGl~v--~~li~EptAAa 176 (652)
...+--|||.+--|..++.-.- +-+++|||++-
T Consensus 86 ~~LSGGqkQRvaiAraL~~~p~~~ililDEPtsgL 120 (176)
T cd03238 86 STLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 86899999999999999868998689971774458
No 411
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase; InterPro: IPR010039 This entry describes a small family of highly conserved proteins (>60 0dentity). Two of these, BcbF and EcbF of Pasteurella multocida are believed to be part of the capsule polysaccharide biosynthesis machinery because they are co-transcribed from a locus devoted to that purpose . In P. multocida there are six different variant capsules (A-F), and these proteins are found only in B and E. The other two species in which this gene is (currently) found are both also pathogenic. These proteins are also members of the IIIC subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. All of the characterised enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in this subfamily..
Probab=26.33 E-value=31 Score=12.88 Aligned_cols=42 Identities=14% Similarity=0.284 Sum_probs=28.6
Q ss_pred CCCEEEEE--CC-CCEEEEEECCEEECHHHHHHHHHHHHHHHHHH
Q ss_conf 19869997--59-98279995795871999999999999999999
Q gi|255764494|r 88 LVPFKIVE--GK-GGDAWIEAQGKQYSPSQISAIVLQKMKETAES 129 (652)
Q Consensus 88 ~~~~~~~~--~~-~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~ 129 (652)
..||+-+- .+ .|.-+|-++.+...|+|-+++-+..++...+.
T Consensus 77 ~VPyDEI~vGKPWCG~dGFYvDDRAiRP~EF~~L~~d~I~~l~~~ 121 (126)
T TIGR01689 77 NVPYDEIYVGKPWCGHDGFYVDDRAIRPEEFSSLTYDEIKKLTKI 121 (126)
T ss_pred CCCCCEEEECCCCCCCCCCEECCCCCCCHHHHCCCHHHHHHHHHH
T ss_conf 998452664487418888355253338212201577899888753
No 412
>smart00035 CLa CLUSTERIN alpha chain.
Probab=26.24 E-value=34 Score=12.61 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 0244789999999999885411556
Q gi|255764494|r 247 LKQDTLALQRLKEAAEKAKIELSST 271 (652)
Q Consensus 247 ~~~~~~a~~rL~~~~e~aK~~LS~~ 271 (652)
++.|.....++...|||++..||.-
T Consensus 61 iR~NSsgClk~~~~CeKCqeiL~~D 85 (216)
T smart00035 61 IRHNSTGCLKMKDQCEKCQEILSVD 85 (216)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 7206235567898999999998875
No 413
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=26.23 E-value=34 Score=12.61 Aligned_cols=99 Identities=18% Similarity=0.391 Sum_probs=54.9
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
Q ss_conf 542013322455213447665536787642013---43024478999999999988541155650358630443467887
Q gi|255764494|r 212 EVKATNGDTFLGGEDFDSCLVEHICDTFKKENG---IDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGA 288 (652)
Q Consensus 212 ~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~---~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g 288 (652)
+|.=|+|.+-| =.|+...+ +..+...+ +.+++|-. .|.+.++++|.. .-....|+++++
T Consensus 70 kiRlTGGEPLl-R~di~~li-----~~l~~~~gi~~v~lTTNG~---lL~~~a~~Lk~a--GL~riNISLDsL------- 131 (334)
T PRK00164 70 KIRLTGGEPLL-RKDLEDII-----ARLAALPGIRDLALTTNGY---LLARRAAALKDA--GLTRVNVSLDSL------- 131 (334)
T ss_pred EEEECCCCCCC-CCCHHHHH-----HHHHHCCCCCCEEEECCHH---HHHHHHHHHHHC--CCCEEEEEEEEC-------
T ss_conf 79860788432-35789999-----9986327975178844488---999999999985--998699711318-------
Q ss_pred CEEEEEECCCCCCCCCC-CCHHHHHHCCCCCCHHCCCCCEEEEEEEECC
Q ss_conf 21268731100001234-2000011001111010135631101466307
Q gi|255764494|r 289 QHLNMKLTRAQFERLVN-HLIQKTVEPCKKCLQDAGLSPSDIDEVVLVG 336 (652)
Q Consensus 289 ~d~~~~itR~~fe~l~~-~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvG 336 (652)
.++.|.++.. ..+.++..-|+.|++ +|+++--|+.|++=|
T Consensus 132 -------d~~~f~~IT~~~~l~~Vl~gI~~A~~-~G~~~vKiN~V~~~g 172 (334)
T PRK00164 132 -------DPERFKAITGRDRLDQVLAGIDAALA-AGLEPVKVNAVLMKG 172 (334)
T ss_pred -------CHHHHHHHHCCCCHHHHHHHHHHHHH-CCCCCEEEEEEEECC
T ss_conf -------99999998489975999999999995-898761689996379
No 414
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=26.18 E-value=27 Score=13.36 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=25.6
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 37788740257886344211222222221024788
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-|...+--|||.+--|..++.=..+-|++||||.-
T Consensus 140 ~~~~LSgGqkqrv~iA~aL~~~P~lllLDEPt~gL 174 (242)
T TIGR03411 140 LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174 (242)
T ss_pred CHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 63459978999999999997389989991864369
No 415
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.01 E-value=26 Score=13.47 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=25.9
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
--|...+.-|||.+--|-.++.=.-+-|++|||++-
T Consensus 125 ~~p~~LSGGq~QRVaiARAl~~~P~llllDEP~s~L 160 (235)
T cd03299 125 RKPETLSGGEQQRVAIARALVVNPKILLLDEPFSAL 160 (235)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 894458999999999999997389989992887646
No 416
>pfam10452 TCO89 TORC1 subunit TCO89. TC089 is a component of the TORC1 complex. TORC1 is responsible for a wide range of rapamycin-sensitive cellular activities.
Probab=26.01 E-value=34 Score=12.58 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=17.6
Q ss_pred HCCCCCCCCCCCHHHHHHHHHCC-CCCCCEEEEEEECCC
Q ss_conf 11222222221024788886034-456550799872441
Q gi|255764494|r 160 IAGLDVLRIINEPTAAALAYGLD-KKDARTVIVFDFGGG 197 (652)
Q Consensus 160 ~AGl~v~~li~EptAAal~Y~~~-~~~~~~vlV~D~Ggg 197 (652)
+.||+-..|..-|+-.+ +.|+. .....+-.|.|+-++
T Consensus 58 iSgLnMTAL~~~p~h~g-~~GL~p~r~~st~sVl~Lh~~ 95 (457)
T pfam10452 58 LSGLNMTALSSGPVHTG-GNGLIPRRGRSTHSVLDLHDA 95 (457)
T ss_pred HCCCCEEEECCCCCCCC-CCCCCCCCCCCCCEEEEECCC
T ss_conf 31463132025776568-888677889866146775257
No 417
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=26.00 E-value=25 Score=13.59 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 78874025788634421122222222102478
Q gi|255764494|r 144 AYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 144 ~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
..++.-|||.+.-|..+|.=.-+-+++||||.
T Consensus 122 ~~LS~G~kqrv~iAral~~~p~llllDEPt~~ 153 (195)
T PRK13541 122 YSLSSGMQKVVALARLIACQSDLWLLDEVETN 153 (195)
T ss_pred HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 45999999999999999709999999787655
No 418
>PRK07800 consensus
Probab=25.97 E-value=25 Score=13.67 Aligned_cols=52 Identities=25% Similarity=0.288 Sum_probs=30.4
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCC-CCCCHHHHHHHHHHHCCCC
Q ss_conf 58719999999999999999998388473369853--778-8740257886344211222
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAY-FNDAQRQATKDAGRIAGLD 164 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~-f~~~qR~a~~~Aa~~AGl~ 164 (652)
+.++|++|.+..++.+.+.+. .-...|.++++.. |.. .....|++ +-.+|+.
T Consensus 22 ~~~~~~~L~~~~i~~~l~~~g-l~p~~Id~vi~G~v~~~g~g~n~aR~~----~l~aglp 76 (393)
T PRK07800 22 KDFSASDLGGIAIKAALEKAG-VAADQVDYVIMGQVLQAGAGQIPARQA----AVAAGIP 76 (393)
T ss_pred CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCCCCCCHHHHH----HHHCCCC
T ss_conf 999889999999999999749-998998989999247667665099999----9976989
No 419
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=25.96 E-value=27 Score=13.33 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=28.9
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 98537788740257886344211222222221024788
Q gi|255764494|r 139 VITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 139 VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.=.-|...+--|||.+--|..++.=..+=|++|||++-
T Consensus 138 ~~~~p~~LSgGq~QRvaiAral~~~p~vlllDEPT~~L 175 (648)
T PRK10535 138 VEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGAL 175 (648)
T ss_pred HCCCHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 55782338999999999999997289899956885557
No 420
>KOG0994 consensus
Probab=25.96 E-value=34 Score=12.58 Aligned_cols=12 Identities=8% Similarity=0.343 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|255764494|r 557 QKSIRESIDALR 568 (652)
Q Consensus 557 k~~i~~~l~e~e 568 (652)
..+|...+++++
T Consensus 1621 ~~eL~~~~e~lk 1632 (1758)
T KOG0994 1621 LGELETRMEELK 1632 (1758)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 421
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=25.90 E-value=25 Score=13.64 Aligned_cols=11 Identities=18% Similarity=0.480 Sum_probs=4.4
Q ss_pred HHHHHHCCCCC
Q ss_conf 63442112222
Q gi|255764494|r 155 KDAGRIAGLDV 165 (652)
Q Consensus 155 ~~Aa~~AGl~v 165 (652)
.++|+.+|..+
T Consensus 115 ~e~a~~~Gv~I 125 (339)
T COG0309 115 DEEAEEAGVSI 125 (339)
T ss_pred HHHHHHCCCEE
T ss_conf 99999839749
No 422
>PRK06845 consensus
Probab=25.84 E-value=34 Score=12.56 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=31.3
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 587199999999999999999983884733698537788740257886344211222
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLD 164 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~ 164 (652)
+.++|++|.+..++.+.+.+. --...|..+++..=..-...+-...+.++-.|||.
T Consensus 22 ~~~~~~~L~~~a~~~al~~~g-i~~~~Id~vi~G~~~~~g~~~~~~aR~~aL~aGlp 77 (392)
T PRK06845 22 KDLSATDLGVAAAKAALEQAG-VSPEDIGHVVFGNVIQTGKDAIYLARHIGLKAGLP 77 (392)
T ss_pred CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCC
T ss_conf 889999999999999998719-79899798999815645654334999999976999
No 423
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.84 E-value=28 Score=13.18 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8740257886344211222222221024788
Q gi|255764494|r 146 FNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 146 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.+..|||.+--|..++.=..+-|++|||++-
T Consensus 109 LS~gqrqrv~iA~aL~~~P~lllLDEPt~gL 139 (192)
T cd03232 109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGL 139 (192)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 7976765899999984499889984887688
No 424
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=25.81 E-value=34 Score=12.56 Aligned_cols=65 Identities=20% Similarity=0.080 Sum_probs=38.8
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC-CEEEEEEECCCEEEE
Q ss_conf 36985377887402578863442112222222210247888860344565-507998724411454
Q gi|255764494|r 137 KAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDA-RTVIVFDFGGGTFDV 201 (652)
Q Consensus 137 ~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~-~~vlV~D~Gggt~dv 201 (652)
+.|.++|..+...=-.++..+-...+++.+..-||-.|+..|-|.-+... --+++.-.|-|.+..
T Consensus 35 ~~iFG~PG~~~lpl~dal~~~~~~~~i~~I~~rhE~~A~~aAdGYAR~tGk~gv~~~T~GPG~~N~ 100 (615)
T PRK07418 35 KHIFGYPGGAILPIYDALYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTSGPGATNL 100 (615)
T ss_pred CEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
T ss_conf 899980797537999999845546896186229789999999999999799989996456079999
No 425
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=25.80 E-value=26 Score=13.51 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=27.5
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|..++.-|||.+--|..+++=..+-+++|||+.-
T Consensus 129 ~~~~~LSgG~kqrv~ia~al~~~P~lliLDEPt~gL 164 (220)
T cd03263 129 KRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 757678999999999999995699999995887688
No 426
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=25.77 E-value=32 Score=12.77 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=20.4
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 788740257886344211222222221024788
Q gi|255764494|r 144 AYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 144 ~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
..++.-|||.+--|-.++.=..+-|++|||++.
T Consensus 126 ~~LSgGQkQRvalARal~~~~~illlDEPts~L 158 (204)
T cd03250 126 INLSGGQKQRISLARAVYSDADIYLLDDPLSAV 158 (204)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 757999999999999995399999996987666
No 427
>KOG0445 consensus
Probab=25.76 E-value=25 Score=13.56 Aligned_cols=13 Identities=46% Similarity=0.948 Sum_probs=10.8
Q ss_pred CCCCEEEEEEECC
Q ss_conf 5655079987244
Q gi|255764494|r 184 KDARTVIVFDFGG 196 (652)
Q Consensus 184 ~~~~~vlV~D~Gg 196 (652)
-+++.|||||||.
T Consensus 368 l~p~eVLvFDFGS 380 (919)
T KOG0445 368 LQPKEVLVFDFGS 380 (919)
T ss_pred CCCCEEEEEECCC
T ss_conf 4763589996475
No 428
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=25.73 E-value=35 Score=12.55 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=10.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0001124566899999999899
Q gi|255764494|r 498 ASGGLSSEDIEKMVKDAEMNAE 519 (652)
Q Consensus 498 ~~~~Ls~eei~~~~~eae~~~~ 519 (652)
.-.|++.+||+.+.++-..+++
T Consensus 115 ~~lG~~~~ei~~~~~eIieFaE 136 (249)
T COG1134 115 LILGLTRKEIDEKVDEIIEFAE 136 (249)
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9846669999988899999987
No 429
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=25.68 E-value=28 Score=13.26 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 788740257886344211222222221024788
Q gi|255764494|r 144 AYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 144 ~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
..++.-|||.+.-|.-++.=..+-+++||||.-
T Consensus 126 ~~LSgGqkqrv~lar~l~~~p~illLDEPt~gL 158 (200)
T PRK13540 126 GLLSSGQKRQVALLRLWMSKAKLWLLDEPLVAL 158 (200)
T ss_pred HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 249999999999999998399989991776438
No 430
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=25.49 E-value=24 Score=13.71 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=34.7
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCCC--CCCHHHHHHHHHH---HCCCCCCCCCCCH
Q ss_conf 58719999999999999999998388473369853--7788--7402578863442---1122222222102
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAYF--NDAQRQATKDAGR---IAGLDVLRIINEP 172 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~f--~~~qR~a~~~Aa~---~AGl~v~~li~Ep 172 (652)
+.++|++|.+..++.+...+. .-...|.++|+.. ++.- ....|++.+.|.- ..++.+-+..-..
T Consensus 22 ~~~~~~~L~~~a~~~~l~r~~-v~~~~Id~vi~G~v~~~g~~~~n~aR~~~l~aglp~~vpa~tvn~~C~SG 92 (390)
T PRK06504 22 AGWHPADLAAQVLDALVDRSG-ADPAQIEDVIMGCVSQAGEQAMNVARNAVLASKLPESVPGTSIDRQCGSS 92 (390)
T ss_pred CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCH
T ss_conf 999899999999999998809-89899898999917874533240999999977999767547773467858
No 431
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=25.37 E-value=31 Score=12.87 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=23.5
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 788740257886344211222222221024788
Q gi|255764494|r 144 AYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 144 ~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
..|+--|||.+.-|..++.=.-+-+++|||++-
T Consensus 103 ~~LSGGekqrv~iaral~~~P~lllLDEPtsgL 135 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGL 135 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 367999999999999996099999996962269
No 432
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=25.36 E-value=35 Score=12.50 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=35.5
Q ss_pred EEECHHHHHHHHHHHHHHH-HHHHHCCCCCEEEEE--ECCC--CCCCHHHHHHHHH---HHCCCCCCCCCCCHH-HHHHH
Q ss_conf 5871999999999999999-999838847336985--3778--8740257886344---211222222221024-78888
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKET-AESFLGETVSKAVIT--VPAY--FNDAQRQATKDAG---RIAGLDVLRIINEPT-AAALA 178 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~-ae~~l~~~v~~~Vit--VP~~--f~~~qR~a~~~Aa---~~AGl~v~~li~Ept-AAal~ 178 (652)
+.++|++|.+..++.+.+. +. .-...|+++++. .|+- .....|++.+.|. ...++.+-|..-... |..++
T Consensus 22 ~~~~~~~L~a~~i~~~l~r~~~-l~~~~Id~vi~G~~~~~g~~g~n~aR~aal~aGlp~~vpa~TVnr~C~SGl~Ai~~A 100 (401)
T PRK09050 22 SSVRADDLGAVPLKALMERNPG-VDWEAVDDVIYGCANQAGEDNRNVARMSALLAGLPVSVPGTTINRLCGSGMDAVGTA 100 (401)
T ss_pred CCCCHHHHHHHHHHHHHHHCCC-CCHHHCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHH
T ss_conf 9998899999999999973589-698998959996377657455769999999779998885578601307899999999
Q ss_pred H
Q ss_conf 6
Q gi|255764494|r 179 Y 179 (652)
Q Consensus 179 Y 179 (652)
+
T Consensus 101 a 101 (401)
T PRK09050 101 A 101 (401)
T ss_pred H
T ss_conf 9
No 433
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=25.30 E-value=26 Score=13.51 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=18.7
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 8874025788634421122222222102478
Q gi|255764494|r 145 YFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 145 ~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
.++.-|||.+.-|..+++=.-+-+++|||+.
T Consensus 153 ~LSgG~rqrv~ia~aL~~~P~lllLDEPt~g 183 (236)
T cd03267 153 QLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183 (236)
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 6999999999999999679999999798768
No 434
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=25.15 E-value=35 Score=12.47 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 998999999999999999
Q gi|255764494|r 552 IAEAEQKSIRESIDALRT 569 (652)
Q Consensus 552 lse~ek~~i~~~l~e~e~ 569 (652)
++++|+..+...++++++
T Consensus 628 ~~~~~~~~~~~~~~~~~~ 645 (706)
T PRK12820 628 FAEAERAAIESALADAEE 645 (706)
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 785677889999999999
No 435
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=25.13 E-value=35 Score=12.47 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999989998999999999999999999999999872
Q gi|255764494|r 508 EKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREH 548 (652)
Q Consensus 508 ~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~ 548 (652)
+++..+++... ....+...++|+++...+.+.++.+...
T Consensus 54 ~~~k~eae~~~--~~ye~~l~~Ak~eA~~i~~ea~~~l~~e 92 (157)
T PRK06569 54 DTLTLEVEKLN--KYYNEEIDKTNTEIDRLKKEKIDSLESE 92 (157)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999--9999999999999999999999999999
No 436
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=25.06 E-value=35 Score=12.53 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 788740257886344211222222221024788
Q gi|255764494|r 144 AYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 144 ~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
..++.-|||.+--|..++.=..+-+++||||+.
T Consensus 97 ~~LSgGqkqRv~iAral~~~p~ililDEpts~L 129 (178)
T cd03247 97 RRFSGGERQRLALARILLQDAPIVLLDEPTVGL 129 (178)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 888999999999999996497976722865569
No 437
>TIGR02148 Fibro_Slime fibro-slime domain; InterPro: IPR011874 This entry represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far..
Probab=24.86 E-value=31 Score=12.89 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=8.3
Q ss_pred EEEEEEECCCEE
Q ss_conf 079987244114
Q gi|255764494|r 188 TVIVFDFGGGTF 199 (652)
Q Consensus 188 ~vlV~D~Gggt~ 199 (652)
+=||+|+||-+.
T Consensus 36 nkLvVD~GG~H~ 47 (92)
T TIGR02148 36 NKLVVDLGGLHP 47 (92)
T ss_pred CEEEEEECCCCC
T ss_conf 988870088555
No 438
>PRK07124 consensus
Probab=24.85 E-value=26 Score=13.45 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=29.4
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCC-CCCCHHHHHHHH
Q ss_conf 58719999999999999999998388473369853--778-874025788634
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAY-FNDAQRQATKDA 157 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~-f~~~qR~a~~~A 157 (652)
+.++|.+|.+..++.+.+.+. .-...|+.+|+.. |.. .....|++.+.+
T Consensus 22 ~~~~~~~L~~~ai~~al~~~~-i~~~~Id~vi~G~v~~~g~g~n~ar~~al~a 73 (402)
T PRK07124 22 KSVPAGELAGVAIKGALEQAK-VSPEAIDEVIVGNVVSAGQGMGPGRQAAIFA 73 (402)
T ss_pred CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCCCCCCHHHHHHHHC
T ss_conf 899999999999999999839-8989999899993475555667999999976
No 439
>pfam08392 FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein. The members of this family are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region featured in this family contains the active site residues, as well as motifs involved in substrate binding.
Probab=24.81 E-value=34 Score=12.58 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=40.4
Q ss_pred EEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEE-ECCCCCCHHHHHHHHHHCCCC
Q ss_conf 687311000012342000011001111010135631101466-307853056778865410111
Q gi|255764494|r 292 NMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVV-LVGGMTRMPKIQQSVQDFFNK 354 (652)
Q Consensus 292 ~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~-lvGGssriP~v~~~i~~~fg~ 354 (652)
+..-.|+|.|..+ ...|++.|++.|++|.|||-++ =+...+-.|-+-.+|-+.|+-
T Consensus 75 s~~~ar~Eae~v~-------f~avd~Lf~ktgv~P~dIdiLVvNcSlf~PtPSLsamivNrykm 131 (290)
T pfam08392 75 TMAEAREEAEEVM-------FGAVDELFAKTGVRPRDIGILVVNCSLFNPTPSLSAMIVNRYKM 131 (290)
T ss_pred CHHHHHHHHHHHH-------HHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCHHHHHHHHHCC
T ss_conf 7999999999999-------99999999973998768999999677888885289999886068
No 440
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases; InterPro: IPR002155 Two different types of thiolase , , are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases ..
Probab=24.80 E-value=36 Score=12.43 Aligned_cols=70 Identities=26% Similarity=0.274 Sum_probs=41.2
Q ss_pred CCEEECHHHHHHHHHHHHHHHH-H---HHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCC-------CCCCCCCCH-H
Q ss_conf 7958719999999999999999-9---98388473369853778874025788634421122-------222222102-4
Q gi|255764494|r 106 QGKQYSPSQISAIVLQKMKETA-E---SFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGL-------DVLRIINEP-T 173 (652)
Q Consensus 106 ~~~~~~peei~a~iL~~lk~~a-e---~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl-------~v~~li~Ep-t 173 (652)
--+.++|++|.+.+++.+.+.. . +....-|-.+|+..........|++. -.||| .|-|+.-.. +
T Consensus 18 ~~~~~~a~dL~~~~i~~ll~r~p~l~~~~iD~vi~G~V~~~g~~g~~~aR~aa----L~AGl~~~vpa~tvnr~CaSGl~ 93 (447)
T TIGR01930 18 SLKDLSAEDLGAAVIKELLERNPGLDPELIDDVILGNVLQAGEQGQNIARQAA----LAAGLPESVPALTVNRQCASGLQ 93 (447)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEEEECCCCCCHHHHHHHH----HHCCCCCCCCEEEECHHHHHHHH
T ss_conf 45787879999999999998536888467281776100057764414899999----87068987873442023242799
Q ss_pred HHHHHH
Q ss_conf 788886
Q gi|255764494|r 174 AAALAY 179 (652)
Q Consensus 174 AAal~Y 179 (652)
|..+++
T Consensus 94 Av~~aa 99 (447)
T TIGR01930 94 AVALAA 99 (447)
T ss_pred HHHHHH
T ss_conf 999999
No 441
>pfam04684 BAF1_ABF1 BAF1 / ABF1 chromatin reorganising factor. ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication. ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 S. cerevisiae ). The N-terminal two thirds of the protein are necessary for DNA binding, and the N-terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilize the protein structure.
Probab=24.70 E-value=29 Score=13.16 Aligned_cols=10 Identities=40% Similarity=0.693 Sum_probs=5.5
Q ss_pred HHHCCCEEEE
Q ss_conf 5201986999
Q gi|255764494|r 85 DASLVPFKIV 94 (652)
Q Consensus 85 ~~~~~~~~~~ 94 (652)
.++.+||+|.
T Consensus 65 HLKsCPFKIL 74 (508)
T pfam04684 65 HLKSCPFKIL 74 (508)
T ss_pred ECCCCCCEEE
T ss_conf 4268862247
No 442
>PRK07937 lipid-transfer protein; Provisional
Probab=24.69 E-value=18 Score=14.61 Aligned_cols=13 Identities=31% Similarity=0.716 Sum_probs=7.3
Q ss_pred CCCCEEEEEEECC
Q ss_conf 5655079987244
Q gi|255764494|r 184 KDARTVIVFDFGG 196 (652)
Q Consensus 184 ~~~~~vlV~D~Gg 196 (652)
..-..+||+-++-
T Consensus 100 G~~d~vLvvG~ek 112 (352)
T PRK07937 100 GEVDTALVYGFGK 112 (352)
T ss_pred CCCCEEEEEEECC
T ss_conf 8999899987336
No 443
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=24.62 E-value=29 Score=13.07 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHH-HHCCCCCEEEEEE-----------CCCCCCCHHHHHHHHHHHCC
Q ss_conf 999999999999999999-8388473369853-----------77887402578863442112
Q gi|255764494|r 112 PSQISAIVLQKMKETAES-FLGETVSKAVITV-----------PAYFNDAQRQATKDAGRIAG 162 (652)
Q Consensus 112 peei~a~iL~~lk~~ae~-~l~~~v~~~VitV-----------P~~f~~~qR~a~~~Aa~~AG 162 (652)
|.+-...+-+-+++.... .+|.+++++-+|+ +..|.-+-+.|+++|++.||
T Consensus 53 P~~f~~ave~Gv~eal~~Gv~Gypv~DvkVtL~dG~~h~vdSs~~aF~~Aa~~A~r~Al~~AG 115 (115)
T cd01684 53 PRSFQNAVEETVRETLQQGLYGWEVTDCKVTLTYGRYHSPVSTAADFRELTPRVLRQALKKAG 115 (115)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 988999999999999952988887745899998163048878888999999999999999767
No 444
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=24.61 E-value=25 Score=13.60 Aligned_cols=185 Identities=25% Similarity=0.354 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCC--HH---HHHHHHHHHCCCCCCC-CCCCH-----HHHH---HHHHCCCCC
Q ss_conf 999999999983884733698537788740--25---7886344211222222-22102-----4788---886034456
Q gi|255764494|r 120 LQKMKETAESFLGETVSKAVITVPAYFNDA--QR---QATKDAGRIAGLDVLR-IINEP-----TAAA---LAYGLDKKD 185 (652)
Q Consensus 120 L~~lk~~ae~~l~~~v~~~VitVP~~f~~~--qR---~a~~~Aa~~AGl~v~~-li~Ep-----tAAa---l~Y~~~~~~ 185 (652)
|++||.+ .|-.|.+. =|.|..|++. |- +||+ |.+.|=|... +|+-| |||| |.|+.....
T Consensus 43 Ln~mR~I---~Lt~PL~E--k~RP~SF~EIiGQe~GI~ALK--AALCGPNPQHVIiYGPPGVGKTAAARLVLeeAKk~~~ 115 (532)
T TIGR02902 43 LNKMRAI---RLTEPLSE--KTRPKSFDEIIGQEEGIKALK--AALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPA 115 (532)
T ss_pred HHCCCEE---ECCCCCCC--CCCCCCCCCCCCCHHHHHHHH--HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 6111434---16788774--667776332567355689999--8606868963898788696178999999998650875
Q ss_pred ---CCEEEEEEECCCEEEEEEEEECCC-EEEE-ECCCCCC-----------------------CCCCHHHHHHHHHHHHH
Q ss_conf ---550799872441145431010231-4654-2013322-----------------------45521344766553678
Q gi|255764494|r 186 ---ARTVIVFDFGGGTFDVSLLEMGDG-VFEV-KATNGDT-----------------------FLGGEDFDSCLVEHICD 237 (652)
Q Consensus 186 ---~~~vlV~D~Gggt~dvsi~~~~~~-~~~v-l~~~gd~-----------------------~lGG~d~D~~l~~~~~~ 237 (652)
...-.|+ -.|+|.++|++. .-+- +++.+|+ -=||-- |++
T Consensus 116 SPFke~A~FV-----EiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGGvL--------FID 182 (532)
T TIGR02902 116 SPFKEEAAFV-----EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVL--------FID 182 (532)
T ss_pred CCCCCCCEEE-----EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE--------EEC
T ss_conf 3789886689-----850510360214666656776158533376545788557587776320258655--------121
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 76420134302447899999999998854115565035863044346788721268731100001234200001100111
Q gi|255764494|r 238 TFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKK 317 (652)
Q Consensus 238 ~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~ 317 (652)
++.+ .+|-.|.||++--|-=|-=|-+ |-. .++ |=++. +-+.++|+.
T Consensus 183 EIGE-------LHP~~MNKLLKVLEDRKVFLdS---AYY-----~s~-----~pniP-------~hI~dIFqn------- 228 (532)
T TIGR02902 183 EIGE-------LHPVQMNKLLKVLEDRKVFLDS---AYY-----SSE-----DPNIP-------SHIRDIFQN------- 228 (532)
T ss_pred CCCC-------CCHHHHHHHHHHHHCCCCHHHC---CCC-----CCC-----CCCCC-------HHHHHHHCC-------
T ss_conf 2466-------5824353141133022200001---235-----877-----78654-------278997206-------
Q ss_pred CCHHCCCCCEEEEEEEECCCCCCH-----HHHHHHHHHCCCCCCCCCCCCCCH--HHHHHH
Q ss_conf 101013563110146630785305-----677886541011111113565310--111110
Q gi|255764494|r 318 CLQDAGLSPSDIDEVVLVGGMTRM-----PKIQQSVQDFFNKSPSKGVNPDEV--VAMGAA 371 (652)
Q Consensus 318 ~L~~a~~~~~~I~~V~lvGGssri-----P~v~~~i~~~fg~~~~~~~npdea--Va~GAA 371 (652)
|+..+ .=|||-+||. |.+|.+--+.| .+.|.++|. ||+=||
T Consensus 229 -----GlPAD----FRLiGATTR~PeEIpPAlRSRC~EIF----FR~L~~EEi~~iAk~Aa 276 (532)
T TIGR02902 229 -----GLPAD----FRLIGATTRNPEEIPPALRSRCVEIF----FRPLLKEEIKEIAKNAA 276 (532)
T ss_pred -----CCCCC----EECCCCCCCCCCCCCHHHHCCCEEEE----ECCCCHHHHHHHHHHHH
T ss_conf -----78734----01213336987767834650522677----16888789999987656
No 445
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=24.57 E-value=36 Score=12.39 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=21.0
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 778874025788634421122222222102478
Q gi|255764494|r 143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
+..++.-|||.+--|-.++.=..+-+++|||++
T Consensus 123 g~~LSgGqkQrl~iARal~~~p~ililDEpts~ 155 (207)
T cd03369 123 GLNLSQGQRQLLCLARALLKRPRVLVLDEATAS 155 (207)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 888698999999999999708999998163444
No 446
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=24.52 E-value=31 Score=12.90 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=23.2
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|...+--|+|.+--|-.++.=.-+=|.+||||+-
T Consensus 130 ~~p~~LSGGe~QRVAIARAL~~~P~illaDEPT~~L 165 (206)
T TIGR03608 130 QKIYELSGGEQQRVALARAILKPSELILADEPTGSL 165 (206)
T ss_pred CCCHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 992444869999999999982499999963998778
No 447
>KOG1002 consensus
Probab=24.50 E-value=36 Score=12.39 Aligned_cols=42 Identities=26% Similarity=0.258 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 24566899999999899989999999999999999999999998
Q gi|255764494|r 503 SSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLR 546 (652)
Q Consensus 503 s~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~ 546 (652)
|...|+.++++.-.+-+.|+-.+..+= -++-+++.-+.-.|.
T Consensus 618 sSTKIEAL~EEl~~l~~rd~t~KsIVF--SQFTSmLDLi~~rL~ 659 (791)
T KOG1002 618 SSTKIEALVEELYFLRERDRTAKSIVF--SQFTSMLDLIEWRLG 659 (791)
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHHHHHHHHH
T ss_conf 015799999999999971552542049--877889999998861
No 448
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=24.35 E-value=27 Score=13.32 Aligned_cols=52 Identities=19% Similarity=0.121 Sum_probs=30.3
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC----CCCCHHHHHHHHHHHCCCC
Q ss_conf 58719999999999999999998388473369853778----8740257886344211222
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAY----FNDAQRQATKDAGRIAGLD 164 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~----f~~~qR~a~~~Aa~~AGl~ 164 (652)
+.++|.+|.+..++.+.+.+. .-...|+++++.+=.. .....|++. -.|||.
T Consensus 22 ~~~~~~~L~a~~ik~~l~r~~-l~~~~id~Vi~G~v~~~g~~g~n~aR~aa----L~aGlp 77 (387)
T PRK07850 22 SGLHAAELLGAVQRAVVERAG-IDPGDVEQVIGGCVTQAGEQSNNITRVAW----LTAGLP 77 (387)
T ss_pred CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEECCCCCCCCCCCHHHHHH----HHCCCC
T ss_conf 999889999999999998729-89899798999878676554568999999----977999
No 449
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171.
Probab=24.31 E-value=37 Score=12.36 Aligned_cols=15 Identities=33% Similarity=0.820 Sum_probs=9.1
Q ss_pred CCCCEEEEEEECCCE
Q ss_conf 565507998724411
Q gi|255764494|r 184 KDARTVIVFDFGGGT 198 (652)
Q Consensus 184 ~~~~~vlV~D~Gggt 198 (652)
...+.-||.||||.|
T Consensus 525 DGs~RTLFLDFGG~T 539 (982)
T TIGR02171 525 DGSKRTLFLDFGGST 539 (982)
T ss_pred CCCCCEEEEECCCCC
T ss_conf 776732688568861
No 450
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=24.27 E-value=31 Score=12.88 Aligned_cols=33 Identities=27% Similarity=0.199 Sum_probs=25.4
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 778874025788634421122222222102478
Q gi|255764494|r 143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
+..++--|||.+.-|..+++=.-+-+++|||+.
T Consensus 124 ~~~LS~G~kqrl~la~al~~~p~lliLDEPt~G 156 (208)
T cd03268 124 VKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 356999999999999998569999999388768
No 451
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=24.23 E-value=37 Score=12.35 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=30.7
Q ss_pred CCCEEEEEEEECCCC--CC----HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 563110146630785--30----56778865410111111135653101111100022
Q gi|255764494|r 324 LSPSDIDEVVLVGGM--TR----MPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAG 375 (652)
Q Consensus 324 ~~~~~I~~V~lvGGs--sr----iP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~ 375 (652)
+.+.+.|.+++.||- ++ -|.+.+.|++++.... +--+|+.|+.+.|.
T Consensus 56 ~~~~~~D~liipGG~~~~~~l~~~~~~~~~i~~~~~~~k-----~i~aiC~G~~~La~ 108 (163)
T cd03135 56 VNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGK-----LIAAICAAPAVLAK 108 (163)
T ss_pred CCCCCCCEEEECCCCCHHHHHHHCHHHHHHHHHHHHHCC-----EEEEECHHHHHHHH
T ss_conf 782017989986898217677669999999999998299-----47986454899998
No 452
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.23 E-value=35 Score=12.52 Aligned_cols=33 Identities=9% Similarity=0.040 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 788740257886344211222222221024788
Q gi|255764494|r 144 AYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 144 ~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
..++--|||.+--|..+++=.-+-|++|||+.-
T Consensus 117 ~~LSgGqkqRv~iA~aL~~~P~illlDEPt~gL 149 (202)
T cd03233 117 RGISGGERKRVSIAEALVSRASVLCWDNSTRGL 149 (202)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 458999999999999995299889983876568
No 453
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.13 E-value=33 Score=12.70 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8740257886344211222222221024788
Q gi|255764494|r 146 FNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 146 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.+.-|||.+--|..++.=..+-+++|||++.
T Consensus 81 LSgGqkqrv~iA~al~~~p~ililDEPtsgL 111 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGL 111 (157)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 8869999999999997099999996987668
No 454
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.99 E-value=29 Score=13.13 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=26.0
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-.|...+--|||.+--|-.+|.=.-+-|++|||+|-
T Consensus 131 ~~p~~LSGGqkQRvaiARAl~~~P~ilLlDEP~saL 166 (242)
T cd03295 131 RYPHELSGGQQQRVGVARALAADPPLLLMDEPFGAL 166 (242)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 795668999999999999996299999981876546
No 455
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=23.93 E-value=33 Score=12.74 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=19.1
Q ss_pred CCCCCCCHHHHHHHHHHHCC----------CCCCCCCCCHHHHH
Q ss_conf 77887402578863442112----------22222221024788
Q gi|255764494|r 143 PAYFNDAQRQATKDAGRIAG----------LDVLRIINEPTAAA 176 (652)
Q Consensus 143 P~~f~~~qR~a~~~Aa~~AG----------l~v~~li~EptAAa 176 (652)
|...+.-|||.+.-|..+|- =.-+=|++||||+-
T Consensus 143 ~~~LSGGq~qRv~iAraL~~l~~~~~al~~~P~lLlLDEPts~L 186 (273)
T PRK13547 143 VTTLSGGELARVQFARVLAQLWPPDPGAAQPPRYLLLDEPTAAL 186 (273)
T ss_pred CHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC
T ss_conf 11269999999999999985101110136898689972874448
No 456
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=23.90 E-value=37 Score=12.36 Aligned_cols=32 Identities=25% Similarity=0.536 Sum_probs=17.4
Q ss_pred HHCCCCCCHHCCCCCEEEEEEEECCCCCCHHH
Q ss_conf 10011110101356311014663078530567
Q gi|255764494|r 312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPK 343 (652)
Q Consensus 312 ~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~ 343 (652)
+..+.++|.+-++.++++--|-=+|=|+|+|.
T Consensus 28 l~~~~~al~elg~~~~~~v~vsGIGCs~r~~~ 59 (280)
T PRK11867 28 LAALQRALAELGLDPENVAVVSGIGCSSRLPY 59 (280)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCCHH
T ss_conf 99999999983999021899963157732241
No 457
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=23.87 E-value=30 Score=13.01 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=23.8
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 3778874025788634421122222222102478
Q gi|255764494|r 142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
.|..++.-|||.+.-|..++.=..+-|++|||+.
T Consensus 134 ~~~~LSgGqkqRv~lA~al~~~p~illLDEPt~~ 167 (214)
T PRK13543 134 LVRQLSAGQRKRLALARLWLSPAPLWLLDEPYAN 167 (214)
T ss_pred CHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 8234899999999999998579999998099888
No 458
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=23.85 E-value=37 Score=12.30 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=6.2
Q ss_pred EEEEEEEECCCCC
Q ss_conf 1101466307853
Q gi|255764494|r 327 SDIDEVVLVGGMT 339 (652)
Q Consensus 327 ~~I~~V~lvGGss 339 (652)
.+|..|+|.||-|
T Consensus 6 ~~i~~vILAGG~S 18 (200)
T PRK02726 6 NNLVALILAGGKS 18 (200)
T ss_pred CCCEEEEECCCCH
T ss_conf 7717999857654
No 459
>pfam08759 DUF1792 Domain of unknown function (DUF1792). This putative domain is probably missannotated as a glycosyl transferase 8 family member. This domain is found at the C-terminus of proteins that also contain the glycosyl transferase domain at the N-terminus.
Probab=23.81 E-value=37 Score=12.29 Aligned_cols=54 Identities=28% Similarity=0.263 Sum_probs=25.6
Q ss_pred EEECCCCCCCHHHHHHHHHH-HCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 85377887402578863442-1122222222102478888603445655079987244
Q gi|255764494|r 140 ITVPAYFNDAQRQATKDAGR-IAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGG 196 (652)
Q Consensus 140 itVP~~f~~~qR~a~~~Aa~-~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gg 196 (652)
|-||+-=.-..-..++++++ .+.=..+-+.--|||..|+|-+.+.. .=++|+|+
T Consensus 144 IicPsknAy~~yd~I~e~i~~~~k~~LiLlaLGPTAkVLayDL~~~G---yQaiDIGH 198 (225)
T pfam08759 144 IICPSKNAYSKYDEIEEAIRKNAKDRLILLALGPTAKVLAYDLFKLG---YQAIDIGH 198 (225)
T ss_pred EECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCC---CCEEECCC
T ss_conf 95787747999999999999846787999860861365499998557---80776376
No 460
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=23.78 E-value=28 Score=13.25 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=39.2
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCC--CCCCHHHHHHHHHH---HCCCCCCCCCCCHHHH-HHHH
Q ss_conf 58719999999999999999998388473369853--778--87402578863442---1122222222102478-8886
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAY--FNDAQRQATKDAGR---IAGLDVLRIINEPTAA-ALAY 179 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~--f~~~qR~a~~~Aa~---~AGl~v~~li~EptAA-al~Y 179 (652)
+.++|++|.++.++.+.+.+. .-...|.++++.+ +.. -....|++.+.|.- ..++.|-+..-....| .++|
T Consensus 22 ~~~~~~~L~a~ai~~~l~r~~-i~p~~Id~vi~G~v~~~g~~~~n~aR~~~L~aGlp~~vpa~tVn~~CaSGl~Av~~A~ 100 (382)
T PRK07801 22 AGVHPADLGAHVLRGLVDRND-IDPAAVDDVIFGCVDAIGPQAGNIARTSWLAAGYPEEVPGVTVDRQCGSSQQAIHFAA 100 (382)
T ss_pred CCCCHHHHHHHHHHHHHHHHC-CCHHHCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 999999999999999999809-7989989899971666566556799999997699988864888412158999999999
No 461
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.75 E-value=37 Score=12.29 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=13.8
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 8874025788634421122222222102478
Q gi|255764494|r 145 YFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 145 ~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
..+.-|+|.+--|-.+|==.-+-|++|||.|
T Consensus 149 ~LSGGQQQRLcIARalAv~PeVlLmDEPtSA 179 (253)
T COG1117 149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179 (253)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 7873467899999987269867874486422
No 462
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=23.67 E-value=32 Score=12.81 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=25.1
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
--|...+.-|||.+--|-.++.=.-+-|++|||++-
T Consensus 132 r~p~~LSGGqrQRVaiARAL~~~P~vLLLDEPts~L 167 (352)
T PRK10851 132 RYPAQLSGGQKQRVALARALAVEPQILLLDEPFGAL 167 (352)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 993149999999999999986599999990887668
No 463
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=23.47 E-value=33 Score=12.67 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=26.3
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 7788740257886344211222222221024788
Q gi|255764494|r 143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
|...+.-|||.+.-|-.+|.=..+-|++|||++-
T Consensus 136 ~~~LSGGqrQRV~IARALaq~P~ILLLDEPTs~L 169 (409)
T PRK09536 136 VTSLSGGERQRVLLARALAQATPVLLLDEPTASL 169 (409)
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 0028999999999999996799989995876679
No 464
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=23.43 E-value=37 Score=12.31 Aligned_cols=38 Identities=21% Similarity=0.139 Sum_probs=22.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 98537788740257886344211222222221024788
Q gi|255764494|r 139 VITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 139 VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
+---+..++.-|||.+--|=.++.=..+-+++|||+|.
T Consensus 144 i~~~g~~LSgGqkQRialARal~~~p~ililDEptSaL 181 (226)
T cd03248 144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSAL 181 (226)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 16848876999999999999997599999997976688
No 465
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=23.40 E-value=32 Score=12.76 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=24.5
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 788740257886344211222222221024788
Q gi|255764494|r 144 AYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 144 ~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
..++.-|||.+.-|-.++.=..+-|++|||++-
T Consensus 124 ~~LSgGqkqRv~lA~al~~~p~llllDEPt~gL 156 (201)
T cd03231 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 347999999999999997499999980886557
No 466
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=23.38 E-value=31 Score=12.85 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=25.3
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|...+--|||.+--|-.++.=.-+-|++|||++-
T Consensus 145 ~~p~~LSGGqrQRVaiArAL~~~P~lLllDEPts~L 180 (377)
T PRK11607 145 RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGAL 180 (377)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 896578986878999999874499789964875447
No 467
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.29 E-value=31 Score=12.95 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=26.4
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8537788740257886344211222222221024788
Q gi|255764494|r 140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
=--|...+.-|||.+--|-.+|-=.-+-|++||+++-
T Consensus 125 ~~~p~~LSGGqkQRVaiARAl~~~P~llllDEP~s~L 161 (232)
T cd03300 125 NRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGAL 161 (232)
T ss_pred CCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 1996669989999999999986599999980887646
No 468
>PRK07491 consensus
Probab=23.23 E-value=30 Score=13.05 Aligned_cols=52 Identities=23% Similarity=0.236 Sum_probs=31.0
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCC-CCCCHHHHHHHHHHHCCCC
Q ss_conf 58719999999999999999998388473369853--778-8740257886344211222
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAY-FNDAQRQATKDAGRIAGLD 164 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~-f~~~qR~a~~~Aa~~AGl~ 164 (652)
+.++|++|.+..++.+.+.+. .-...|+++|+.. |+. -....|++ +-.|||.
T Consensus 23 ~~~~~~~L~~~~i~~~l~r~~-l~~~~Id~Vi~G~v~~~g~g~n~aR~~----~L~aGlp 77 (392)
T PRK07491 23 ANTPAHELGAVAIKAALERAG-VDAADVSEVILGQVLTAGQGQNPARQA----SIKAGLP 77 (392)
T ss_pred CCCCHHHHHHHHHHHHHHHHC-CCHHHCCEEEEEECCCCCCCCCHHHHH----HHHCCCC
T ss_conf 999999999999999998719-798998989999457556556199999----9976989
No 469
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=23.22 E-value=38 Score=12.21 Aligned_cols=74 Identities=23% Similarity=0.396 Sum_probs=43.4
Q ss_pred EEEEEECCCEEEEEEEEECC---------------CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH-----
Q ss_conf 79987244114543101023---------------1465420133224552134476655367876420134302-----
Q gi|255764494|r 189 VIVFDFGGGTFDVSLLEMGD---------------GVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLK----- 248 (652)
Q Consensus 189 vlV~D~Gggt~dvsi~~~~~---------------~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~----- 248 (652)
.-+==+||.|||+++--... -.++.|. .|-+-+|=+..-..+++.|++.+ .++|+|+-
T Consensus 42 ~s~E~wGGAtFd~~~Rfl~EdPWerLr~lr~~~pnt~lQmLl-RG~N~vGy~~ypddvv~~fv~~~-~~~GidifRiFDa 119 (499)
T PRK12330 42 WSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSKLQMLL-RGQNLLGYRHYEDEVVDRFVEKS-AENGMDVFRVFDA 119 (499)
T ss_pred EEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCCCHHHHHHHHHHH-HHCCCCEEEEECC
T ss_conf 079803770299999874769899999999867797323131-33550564258879999999999-9769988997244
Q ss_pred -HHHHHHHHHHHHHHHHHHH
Q ss_conf -4478999999999988541
Q gi|255764494|r 249 -QDTLALQRLKEAAEKAKIE 267 (652)
Q Consensus 249 -~~~~a~~rL~~~~e~aK~~ 267 (652)
.+.+. |..+.+.+|+.
T Consensus 120 LNdv~N---m~~ai~~vk~~ 136 (499)
T PRK12330 120 LNDLRN---LETSIKAVKKT 136 (499)
T ss_pred CCCHHH---HHHHHHHHHHC
T ss_conf 445777---89999999971
No 470
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.19 E-value=29 Score=13.11 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=26.3
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 53778874025788634421122222222102478
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
.-+..++--|||.+.-|+.++.=.-+-+++|||+.
T Consensus 124 ~~~~~LSgG~kqrv~la~al~~~p~lllLDEPt~g 158 (210)
T cd03269 124 KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSG 158 (210)
T ss_pred CHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 80577899899999999999579989999288667
No 471
>PRK06690 acetyl-CoA acetyltransferase; Provisional
Probab=23.17 E-value=27 Score=13.31 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=31.8
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 587199999999999999999983884733698537788740257886344211222
Q gi|255764494|r 108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLD 164 (652)
Q Consensus 108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~ 164 (652)
+.++|++|.+..++.+.+. ....|+++++..-. ...| +.-|.|+-.|||.
T Consensus 21 ~~~~~~~L~~~~i~~l~~~----~~~~Id~vi~G~v~--~~g~-n~aR~aaL~aGlp 70 (361)
T PRK06690 21 KDYEVQQLAAPLLTFLSKG----MERAIDDVILGNVV--GPGG-NVARLSALEAGLG 70 (361)
T ss_pred CCCCHHHHHHHHHHHHHHC----CCCCCCEEEEEECC--CCCC-HHHHHHHHHCCCC
T ss_conf 8998899999999999727----91116859999567--7675-0999999975999
No 472
>KOG3179 consensus
Probab=23.17 E-value=26 Score=13.46 Aligned_cols=10 Identities=30% Similarity=0.478 Sum_probs=3.4
Q ss_pred HHHHHHHCCC
Q ss_conf 1111100022
Q gi|255764494|r 366 VAMGAAIQAG 375 (652)
Q Consensus 366 Va~GAA~~a~ 375 (652)
+++|--+.|.
T Consensus 99 ICFGHQiiar 108 (245)
T KOG3179 99 ICFGHQIIAR 108 (245)
T ss_pred EECCHHHHHH
T ss_conf 8211799988
No 473
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.12 E-value=38 Score=12.23 Aligned_cols=24 Identities=13% Similarity=0.369 Sum_probs=20.0
Q ss_pred CCCCCCCCCCHHEECCCCCCCCCC
Q ss_conf 223467522100002356653222
Q gi|255764494|r 374 AGVLQGDVKDLLLLDVTPLSLGIE 397 (652)
Q Consensus 374 a~~ls~~~~~~~~~dv~p~slgie 397 (652)
+.++.|+++-+.++.++||+|...
T Consensus 195 GPIv~P~~~~i~itPI~PHsL~~R 218 (296)
T PRK01231 195 GPIMHPKLDAIVLVPMYPHTLSSR 218 (296)
T ss_pred CCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 954079987499943687646799
No 474
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase; InterPro: IPR011945 This entry represents a small clade of sequences from the metazoa and bacteria. In eukaryotes, this domain exists as an N-terminal fusion to the soluble epoxide hydrolase enzyme and has recently been shown to be an active phosphatase, although the nature of the biological substrate is unclear . These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain indicate membership in subfamily IA..
Probab=23.05 E-value=37 Score=12.34 Aligned_cols=80 Identities=13% Similarity=0.091 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCC--EEEEEECCCCCCC----HH---HHHHHHHHHCCCCCCCCCCC-HHHHHHHHHCCCCC
Q ss_conf 999999999999998388473--3698537788740----25---78863442112222222210-24788886034456
Q gi|255764494|r 116 SAIVLQKMKETAESFLGETVS--KAVITVPAYFNDA----QR---QATKDAGRIAGLDVLRIINE-PTAAALAYGLDKKD 185 (652)
Q Consensus 116 ~a~iL~~lk~~ae~~l~~~v~--~~VitVP~~f~~~----qR---~a~~~Aa~~AGl~v~~li~E-ptAAal~Y~~~~~~ 185 (652)
++.++.++++.+...++..|. ...--+ .++. ++ .++...++.+||++.-|=|= +|-- .-|+-...
T Consensus 69 ~~~f~~~f~~~~~~~~~~~v~~~~~~~~l---~s~~q~tkl~p~m~~~i~~~~~~Gfkt~~lTNN~~l~~--GPGmaq~~ 143 (228)
T TIGR02247 69 AEAFDELFKHKYSLKLKDDVRIKPVFELL---SSEIQVTKLLPEMVKAIKSLRAKGFKTALLTNNFYLDK--GPGMAQEA 143 (228)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEE---ECCEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC--CCCHHHHC
T ss_conf 77888999998634405733431023343---06400025687899999999757775888616730567--76401220
Q ss_pred CCEEEEEEECCCEEEE
Q ss_conf 5507998724411454
Q gi|255764494|r 186 ARTVIVFDFGGGTFDV 201 (652)
Q Consensus 186 ~~~vlV~D~Gggt~dv 201 (652)
.+..++.|+|. .||.
T Consensus 144 ~~~~~p~~~~~-~FD~ 158 (228)
T TIGR02247 144 EEALLPSDVMA-LFDE 158 (228)
T ss_pred CCCCCHHHHHH-HCCH
T ss_conf 46611366764-4106
No 475
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=23.05 E-value=33 Score=12.73 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=26.9
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|...+.-|||.+--|-.++.=.-+-|++|||++-
T Consensus 129 r~p~~LSGGq~QRvaiARAL~~~P~illlDEP~s~L 164 (369)
T PRK11000 129 RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 164 (369)
T ss_pred CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 887466942779999998862599858843666788
No 476
>COG4328 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=22.99 E-value=38 Score=12.25 Aligned_cols=10 Identities=50% Similarity=0.797 Sum_probs=8.5
Q ss_pred CCCEEEEECCC
Q ss_conf 98169980486
Q gi|255764494|r 1 MSKVIGIDLGT 11 (652)
Q Consensus 1 Ms~viGIDlGt 11 (652)
|+ .||||+|=
T Consensus 1 m~-fvGiDlaW 10 (266)
T COG4328 1 MK-FVGIDLAW 10 (266)
T ss_pred CC-EEEEEEEC
T ss_conf 91-57754202
No 477
>PRK13320 pantothenate kinase; Reviewed
Probab=22.91 E-value=39 Score=12.17 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=17.9
Q ss_pred EEEEECCCCEEEEEEEECCEE
Q ss_conf 699804866069999989955
Q gi|255764494|r 4 VIGIDLGTTNSCVAIMDGKNV 24 (652)
Q Consensus 4 viGIDlGtt~s~va~~~~~~~ 24 (652)
.+=||.|+|+.++++++++..
T Consensus 5 ~LliDiGNT~iK~~l~~~~~~ 25 (245)
T PRK13320 5 NLVIDIGNTTTKIAVFQGDSV 25 (245)
T ss_pred EEEEEECCCCEEEEEEECCEE
T ss_conf 999998743139999989999
No 478
>KOG0612 consensus
Probab=22.87 E-value=39 Score=12.16 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=10.5
Q ss_pred EEECCCCCC-CCCCHHHHHHHHHHH
Q ss_conf 542013322-455213447665536
Q gi|255764494|r 212 EVKATNGDT-FLGGEDFDSCLVEHI 235 (652)
Q Consensus 212 ~vl~~~gd~-~lGG~d~D~~l~~~~ 235 (652)
+||-+-|+. .-=|..-|+.=+..|
T Consensus 246 EvLqs~~~~~g~yG~ecDwWSlGV~ 270 (1317)
T KOG0612 246 EVLQSQGDGKGEYGRECDWWSLGVF 270 (1317)
T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 9998634776554876532456789
No 479
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=22.86 E-value=34 Score=12.55 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 8740257886344211222222221024788
Q gi|255764494|r 146 FNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 146 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.+.-|||.+--|-.++.=..+-+++||||+.
T Consensus 97 LSGGQkQRvalARal~~~p~ililDEpts~L 127 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHL 127 (173)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 7699999999999982799999996876689
No 480
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=22.55 E-value=39 Score=12.12 Aligned_cols=56 Identities=25% Similarity=0.479 Sum_probs=31.0
Q ss_pred EEEEEECCCCCCCHHHHHH-HHHHHCCCCCCCCCCCHHHHHHHHHCC------------CCCCC---EEEEEEECC
Q ss_conf 3698537788740257886-344211222222221024788886034------------45655---079987244
Q gi|255764494|r 137 KAVITVPAYFNDAQRQATK-DAGRIAGLDVLRIINEPTAAALAYGLD------------KKDAR---TVIVFDFGG 196 (652)
Q Consensus 137 ~~VitVP~~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAal~Y~~~------------~~~~~---~vlV~D~Gg 196 (652)
.+||+.=..=.+...+..+ ..-.+.|+| |+.|.++... |.+. +.+++ +|+|+|||-
T Consensus 135 ~g~I~~~~~~~~~~~~~~~f~~p~~~~~n---Lv~~Vst~~~-~~~~~~~~~~~~~~~~~~~g~~~~~Vv~~DfG~ 206 (383)
T TIGR01368 135 KGVISTEDSNDEELVEKAKFESPDIDGIN---LVAEVSTKEP-YTWGQGTWNLWKFFVAKRNGKKPLRVVVIDFGV 206 (383)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCCCC---CCCCEECCCC-EEECCCCCHHHHHHHHCCCCCCCEEEEEEECCC
T ss_conf 78996067670356778654246757765---2010011465-560688641664322113689735999985588
No 481
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=22.54 E-value=38 Score=12.26 Aligned_cols=36 Identities=22% Similarity=0.145 Sum_probs=26.0
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
..|.-.+.-|||.+--|-.+|.=.-+=+.+|||+|-
T Consensus 147 ~yP~eLSGGq~QRVaIArAL~~~P~lLi~DEPtsaL 182 (266)
T PRK10419 147 KRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNL 182 (266)
T ss_pred CCHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 784337927877789866640698789996886536
No 482
>PRK09065 glutamine amidotransferase; Provisional
Probab=22.29 E-value=40 Score=12.08 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=33.7
Q ss_pred CCEEEEEEEECCCCCC-------HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 6311014663078530-------567788654101111111356531011111000223467522
Q gi|255764494|r 325 SPSDIDEVVLVGGMTR-------MPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVK 382 (652)
Q Consensus 325 ~~~~I~~V~lvGGssr-------iP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~ 382 (652)
.+++.|.+++.||..- |+.+++.|++.+... -|--.|++|+=+.|..|-+++.
T Consensus 53 ~~~~~dg~iitGS~~~v~d~~pWi~~l~~~ir~~~~~~-----~PilGICfGhQllA~AlGG~V~ 112 (238)
T PRK09065 53 APEDFAGVLITGSHAMVTDRAPWSERTADWLRQAAAAG-----MPLLGICYGHQLLAHALGGEVG 112 (238)
T ss_pred CHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC-----CCEEEEEHHHHHHHHHHCCEEE
T ss_conf 95784889997985205799888999999999998779-----9999981778999998498797
No 483
>PRK10818 cell division inhibitor MinD; Provisional
Probab=22.22 E-value=40 Score=12.07 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=5.5
Q ss_pred CCEEEEEE--ECCCEEE
Q ss_conf 55079987--2441145
Q gi|255764494|r 186 ARTVIVFD--FGGGTFD 200 (652)
Q Consensus 186 ~~~vlV~D--~Gggt~d 200 (652)
++.++++| +|+++++
T Consensus 31 G~kVlliD~D~~~~n~~ 47 (270)
T PRK10818 31 GKKTVVIDFDIGLRNLD 47 (270)
T ss_pred CCCEEEEECCCCCCCCC
T ss_conf 99689996899998887
No 484
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=22.14 E-value=37 Score=12.34 Aligned_cols=32 Identities=34% Similarity=0.339 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 88740257886344211222222221024788
Q gi|255764494|r 145 YFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 145 ~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
-++--|||.+.-|..++.=.-+-+++|||++-
T Consensus 82 qLSgG~~Qrv~iaral~~~p~llilDEPt~gL 113 (163)
T cd03216 82 QLSVGERQMVEIARALARNARLLILDEPTAAL 113 (163)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 69989999999999997299999990975579
No 485
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=22.14 E-value=40 Score=12.06 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=29.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 01466307853056778865410111111135653101111100
Q gi|255764494|r 329 IDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAI 372 (652)
Q Consensus 329 I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~ 372 (652)
+|. ||=|+|.-|+++..|++++|.. ..-++|-+++|+..+.
T Consensus 178 ~Dt--lVLGCTHyPll~~~i~~~~~~~-v~lids~~~~a~~~~~ 218 (269)
T COG0796 178 PDT--LVLGCTHYPLLKPEIQQVLGEH-VALIDSGAETARRLAR 218 (269)
T ss_pred CCE--EEEECCCCHHHHHHHHHHHCCC-CEEECCHHHHHHHHHH
T ss_conf 988--9991748087899999982789-5687789999999999
No 486
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=22.09 E-value=40 Score=12.06 Aligned_cols=47 Identities=30% Similarity=0.466 Sum_probs=19.3
Q ss_pred EEEE-EECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 0146-6307853056778865410111111135653101111100022
Q gi|255764494|r 329 IDEV-VLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAG 375 (652)
Q Consensus 329 I~~V-~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~ 375 (652)
||.| +-|||+--|=.|--.|+.+...--...+.|+-+-|+=+|+.|+
T Consensus 169 ~davFVpvGGGGLiAGVA~~~K~l~P~IkvIGVEp~DS~am~~sL~AG 216 (508)
T TIGR01124 169 LDAVFVPVGGGGLIAGVAALVKQLMPEIKVIGVEPTDSDAMKQSLEAG 216 (508)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCC
T ss_conf 768887117736899999999722896189974786599999998568
No 487
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=22.07 E-value=40 Score=12.05 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=24.2
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 537788740257886344211222222221024788
Q gi|255764494|r 141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 (652)
Q Consensus 141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa 176 (652)
.-|...+.-|||.+--|-.++.=.-+-|++|||++-
T Consensus 143 r~p~~LSGGqqQRVaiARAL~~~P~vLLLDEPts~L 178 (378)
T PRK09452 143 RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSAL 178 (378)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 683549988999999999862399899957864447
No 488
>PRK10030 putative peptidoglycan peptidase; Provisional
Probab=22.06 E-value=40 Score=12.05 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHCCCCC
Q ss_conf 0567788654101111
Q gi|255764494|r 340 RMPKIQQSVQDFFNKS 355 (652)
Q Consensus 340 riP~v~~~i~~~fg~~ 355 (652)
+.|.++..+++.+|..
T Consensus 158 ~~P~~k~~~k~ryg~~ 173 (199)
T PRK10030 158 SNPLVQAKLKERYGKN 173 (199)
T ss_pred CCHHHHHHHHHHCCCC
T ss_conf 4846889999970799
No 489
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=22.01 E-value=28 Score=13.23 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=0.0
Q ss_pred CCCCCHHCCCCCEEEEEEEE
Q ss_conf 11110101356311014663
Q gi|255764494|r 315 CKKCLQDAGLSPSDIDEVVL 334 (652)
Q Consensus 315 i~~~L~~a~~~~~~I~~V~l 334 (652)
+.++|+++|++++|||.+++
T Consensus 297 ~~~~l~~agl~~~Did~~Ei 316 (393)
T PRK08235 297 INALLEKTGKTIEDIDLFEI 316 (393)
T ss_pred HHHHHHHCCCCHHHCCEEEE
T ss_conf 99999984998321673241
No 490
>TIGR01234 L-ribulokinase L-ribulokinase; InterPro: IPR005929 L-ribulokinase (2.7.1.16 from EC) catalyzes the second step in arabinose catabolism. ATP + L-ribulose = ADP + L-ribulose 5-phosphate ; GO: 0008741 ribulokinase activity, 0019572 L-arabinose catabolic process.
Probab=21.86 E-value=30 Score=13.03 Aligned_cols=63 Identities=27% Similarity=0.411 Sum_probs=0.0
Q ss_pred HCCCCCCHHCCCCCEEEEEEEECCCC-CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 00111101013563110146630785-30567788654101111111356531011111000223467
Q gi|255764494|r 313 EPCKKCLQDAGLSPSDIDEVVLVGGM-TRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG 379 (652)
Q Consensus 313 ~~i~~~L~~a~~~~~~I~~V~lvGGs-sriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~ 379 (652)
..+-++..+.++. ++.++..||- .+-|.+.+...+..+.++. .+..+.+-+.|++++++...+
T Consensus 445 ~~~~~~~~~~g~~---~~~~~~~gg~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~g~~~~~~~~~~ 508 (563)
T TIGR01234 445 RAIVETFTDSGVP---VEELFAAGGLARKNPLLLQIYADVTNLPLK-IVGSPQAPALGAAIFAALAAG 508 (563)
T ss_pred HHHHHHHHHCCCC---HHHHHHHCCHHHHHHHHHHHHHHHHCCCEE-EECCCCCHHHHHHHHHHHHHC
T ss_conf 7888776422651---456554323011004677766544067503-421631003445677665410
No 491
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=21.85 E-value=40 Score=12.02 Aligned_cols=52 Identities=13% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCHHCCCCCEEEEEE-EECCCCCCHHHHHHHHHHCCCC--CCCCC
Q ss_conf 0001100111101013563110146-6307853056778865410111--11113
Q gi|255764494|r 308 IQKTVEPCKKCLQDAGLSPSDIDEV-VLVGGMTRMPKIQQSVQDFFNK--SPSKG 359 (652)
Q Consensus 308 ~~~~~~~i~~~L~~a~~~~~~I~~V-~lvGGssriP~v~~~i~~~fg~--~~~~~ 359 (652)
...+++-|+.+|+.+|.+.++|-.+ +.+-.-+-.|.+.+.-.++|+. .|.++
T Consensus 31 t~~~l~ni~~iL~~aG~~~~dVvk~tvyltd~~d~~~~n~v~~~~f~~~~~Part 85 (105)
T cd06150 31 TRQVLAKIDALLAEAGSDKSRILSATIWLADMADFAAMNAVWDAWVPPGHAPARA 85 (105)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 9999999999999859998996164578259999999999999975899999658
No 492
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=21.81 E-value=35 Score=12.54 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHC------CCCCCCCCCCHHHH
Q ss_conf 7788740257886344211------22222222102478
Q gi|255764494|r 143 PAYFNDAQRQATKDAGRIA------GLDVLRIINEPTAA 175 (652)
Q Consensus 143 P~~f~~~qR~a~~~Aa~~A------Gl~v~~li~EptAA 175 (652)
|...+.-|||.+.-|..++ .=.-+-|++|||++
T Consensus 132 ~~~LSGGq~QRv~iAraL~q~~~~~~~P~lLlLDEPtsg 170 (257)
T PRK13548 132 YPTLSGGEQQRVQLARVLAQLWEPGGGPRWLLLDEPTSA 170 (257)
T ss_pred HHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCC
T ss_conf 166999999999999999620010479988998898766
No 493
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed
Probab=21.79 E-value=26 Score=13.43 Aligned_cols=20 Identities=50% Similarity=0.622 Sum_probs=0.0
Q ss_pred CCCCCHHCCCCCEEEEEEEE
Q ss_conf 11110101356311014663
Q gi|255764494|r 315 CKKCLQDAGLSPSDIDEVVL 334 (652)
Q Consensus 315 i~~~L~~a~~~~~~I~~V~l 334 (652)
++++|+++|++++|||.+++
T Consensus 288 ~~~~L~~agl~~~Did~~Ei 307 (387)
T PRK08947 288 TQKALKRAGLSIADIDVFEL 307 (387)
T ss_pred HHHHHHHCCCCHHHCCEEEE
T ss_conf 99999984998655784221
No 494
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=21.68 E-value=25 Score=13.55 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=0.0
Q ss_pred HCCCCCCHHCCCCCEEEEEEEE
Q ss_conf 0011110101356311014663
Q gi|255764494|r 313 EPCKKCLQDAGLSPSDIDEVVL 334 (652)
Q Consensus 313 ~~i~~~L~~a~~~~~~I~~V~l 334 (652)
..++.+|+++++.+++||.|++
T Consensus 28 ~ai~~al~~agl~~~~Id~vi~ 49 (386)
T cd00751 28 AVIKALLERAGLDPEEVDDVIM 49 (386)
T ss_pred HHHHHHHHHCCCCHHHCCEEEE
T ss_conf 9999999984989899998999
No 495
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=21.68 E-value=23 Score=13.93 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHHHHCCCCHHHHHHCCC
Q ss_conf 674435320000100110012221023
Q gi|255764494|r 459 PAPKGTPQIEVAFDIDANGIVQVSALD 485 (652)
Q Consensus 459 ~~~~G~~~I~vtf~id~nGil~Vsa~~ 485 (652)
..|.|...-.|+-+++.+|+|+|.|.+
T Consensus 57 ~LP~~vd~~~v~S~Ls~DGvLtIEak~ 83 (83)
T cd06477 57 QLPDGVEHKDLSAMLCHDGILVVETKD 83 (83)
T ss_pred CCCCCCCHHHEEEEECCCCEEEEEECC
T ss_conf 598996966918986799339998559
No 496
>PTZ00287 6-phosphofructokinase; Provisional
Probab=21.64 E-value=41 Score=11.99 Aligned_cols=98 Identities=12% Similarity=0.077 Sum_probs=0.0
Q ss_pred CEEEEEECCCCCCCCCEEEEEECCCCEE---ECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 9559975689862562799994899899---6678986333083511002067549868726787652019869997599
Q gi|255764494|r 22 KNVRVIENAEGTRTTPSMVGFTDEGERL---VGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKG 98 (652)
Q Consensus 22 ~~~~ii~n~~g~r~~PS~V~~~~~~~~~---vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~~~ 98 (652)
|-|..+-|.-....++++|+|+...+.+ +|.-....+...- .|.|-|||||.-++..++--....|.-++-.+
T Consensus 980 GVP~TidndLk~~~IEtcvGFDT~tKvyasLIGNvltDA~Sa~K---YwhFIRLMGR~aSHivLECALQTHPNvViI~E- 1055 (1439)
T PTZ00287 980 GIPLTGSNNLIHELIETCVGFDSSTKVYASLIGNVLTDAVSMPK---YWHFIRLMGRSPSHEVLECALQTHPNMVIISE- 1055 (1439)
T ss_pred EEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCC---EEEEEEECCCCCHHHHHHHHHHCCCCEEEEHH-
T ss_conf 64332478767762101105422788999999888876412662---27986200465047788775514896898638-
Q ss_pred CEEEEEECCEEECHHHHHHHHHHHHHHHHH
Q ss_conf 827999579587199999999999999999
Q gi|255764494|r 99 GDAWIEAQGKQYSPSQISAIVLQKMKETAE 128 (652)
Q Consensus 99 ~~~~~~~~~~~~~peei~a~iL~~lk~~ae 128 (652)
++..+..+.-+|+..|-.-+-..|+
T Consensus 1056 -----Ev~~~k~TL~~Iv~~IaD~VckRAe 1080 (1439)
T PTZ00287 1056 -----EYGAADKTLWRVVQDIADVVCARAD 1080 (1439)
T ss_pred -----HHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf -----8554316599999999999998875
No 497
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=21.61 E-value=35 Score=12.52 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 778874025788634421122222222102478
Q gi|255764494|r 143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
|...+.-|||.+--|-.++.=.-+-|++||++|
T Consensus 128 P~~LSGGqkQRVaiARAl~~~P~lLLlDEP~sa 160 (213)
T cd03301 128 PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 556999999999999998759998998388764
No 498
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=21.58 E-value=41 Score=11.98 Aligned_cols=51 Identities=25% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HCCCCCEEEEEE-----------CCCCCCCHHHHHHHHHHHCC
Q ss_conf 9999999999999999998--388473369853-----------77887402578863442112
Q gi|255764494|r 112 PSQISAIVLQKMKETAESF--LGETVSKAVITV-----------PAYFNDAQRQATKDAGRIAG 162 (652)
Q Consensus 112 peei~a~iL~~lk~~ae~~--l~~~v~~~VitV-----------P~~f~~~qR~a~~~Aa~~AG 162 (652)
|.+....+-+-+++....- .|.++.++-+++ |..|-.+.++|+++|++.||
T Consensus 53 p~~~~~ave~gv~~~~~~G~l~G~Pv~dvkV~L~~g~~h~~dSse~aF~~Aa~~A~r~a~~~AG 116 (116)
T cd01680 53 PAELKEAVEEGIRDACASGPLTGYPLTDVRVTVLDVPYHEGVSTEAGFRAAAGRAFESAAQKAG 116 (116)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999759815882660799999458878988999999999999999999767
No 499
>PRK07025 consensus
Probab=21.54 E-value=22 Score=14.04 Aligned_cols=20 Identities=30% Similarity=0.712 Sum_probs=0.0
Q ss_pred CCCCCHHCCCCCEEEEEEEE
Q ss_conf 11110101356311014663
Q gi|255764494|r 315 CKKCLQDAGLSPSDIDEVVL 334 (652)
Q Consensus 315 i~~~L~~a~~~~~~I~~V~l 334 (652)
++++|+++|++++|||-+++
T Consensus 297 ~~k~l~~agl~~~Did~~Ei 316 (393)
T PRK07025 297 SRRCLERAGWTVGDLDLMEI 316 (393)
T ss_pred HHHHHHHCCCCCCCCCHHHH
T ss_conf 99999985998334660201
No 500
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.50 E-value=33 Score=12.73 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 778874025788634421122222222102478
Q gi|255764494|r 143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 (652)
Q Consensus 143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA 175 (652)
|...+--|||.+--|=.+|-=.-+-|++|||+|
T Consensus 158 P~qLSGGq~QRVaIARALa~~P~iLLlDEPtsa 190 (269)
T cd03294 158 PDELSGGMQQRVGLARALAVDPDILLMDEAFSA 190 (269)
T ss_pred HHHHCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 678494888899999998639989997587542
Done!