Query         gi|255764494|ref|YP_003065050.2| molecular chaperone DnaK [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 652
No_of_seqs    280 out of 4286
Neff          7.6 
Searched_HMMs 39220
Date          Tue May 31 16:11:10 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764494.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR02350 prok_dnaK chaperone  100.0       0       0 1370.6  41.0  596    3-601     1-598 (598)
  2 PRK00290 dnaK molecular chaper 100.0       0       0 1302.5  52.1  630    1-638     1-631 (631)
  3 PRK13411 molecular chaperone D 100.0       0       0 1292.6  50.9  609    1-611     1-611 (655)
  4 PTZ00186 heat shock 70 kDa pre 100.0       0       0 1293.8  48.9  608    1-610    26-634 (657)
  5 CHL00094 dnaK heat shock prote 100.0       0       0 1258.8  49.6  620    1-636     1-622 (622)
  6 PRK13410 molecular chaperone D 100.0       0       0 1258.8  47.6  603    1-607     1-609 (719)
  7 PTZ00009 heat shock 70 kDa pro 100.0       0       0 1213.5  49.4  602    1-607     1-620 (657)
  8 PRK05183 hscA chaperone protei 100.0       0       0 1218.5  45.8  591    4-608    21-613 (621)
  9 KOG0100 consensus              100.0       0       0 1188.4  41.9  599    1-604    35-646 (663)
 10 pfam00012 HSP70 Hsp70 protein. 100.0       0       0 1114.6  46.9  590    4-601     1-598 (598)
 11 PRK01433 hscA chaperone protei 100.0       0       0 1117.4  40.6  566    3-607    20-585 (595)
 12 TIGR01991 HscA Fe-S protein as 100.0       0       0 1105.2  31.6  596    1-609    22-621 (628)
 13 KOG0102 consensus              100.0       0       0 1016.5  34.9  606    3-608    28-634 (640)
 14 KOG0101 consensus              100.0       0       0  991.1  31.6  596    2-602     7-615 (620)
 15 COG0443 DnaK Molecular chapero 100.0       0       0  959.8  35.3  573    2-601     5-578 (579)
 16 KOG0103 consensus              100.0       0       0  859.2  25.3  582    1-592     1-639 (727)
 17 KOG0104 consensus              100.0       0       0  724.5  33.0  597    2-612    22-748 (902)
 18 PRK11678 putative chaperone; P 100.0       0       0  531.1  26.0  360    5-377     3-448 (450)
 19 pfam06723 MreB_Mbl MreB/Mbl pr 100.0       0       0  506.2  20.4  314    2-376     1-321 (327)
 20 PRK13930 rod shape-determining 100.0       0       0  481.8  21.6  316    1-377     8-330 (336)
 21 PRK13929 rod-share determining 100.0       0       0  479.7  21.4  316    1-377     3-327 (335)
 22 PRK13928 rod shape-determining 100.0       0       0  478.0  21.6  313    1-376     2-323 (325)
 23 PRK13927 rod shape-determining 100.0       0       0  441.7  19.1  312    1-375     7-330 (338)
 24 TIGR00904 mreB cell shape dete 100.0 9.8E-32 2.5E-36  259.1  14.5  310    2-373     2-328 (337)
 25 COG1077 MreB Actin-like ATPase 100.0 3.7E-27 9.6E-32  224.4  17.9  315    2-377     6-332 (342)
 26 PRK09472 ftsA cell division pr  99.8 5.7E-17 1.5E-21  147.3  15.5  321    4-375    10-387 (420)
 27 COG0849 ftsA Cell division ATP  99.7 1.3E-15 3.3E-20  137.0  16.9  300    3-357     7-349 (418)
 28 TIGR02529 EutJ ethanolamine ut  99.6 9.3E-16 2.4E-20  138.1   8.8  192  118-369    44-236 (240)
 29 cd00012 ACTIN Actin; An ubiqui  99.3 9.5E-11 2.4E-15  100.1  13.3  303    5-375     2-346 (371)
 30 smart00268 ACTIN Actin. ACTIN   99.3 1.2E-09 3.2E-14   91.7  17.6  296    3-375     2-346 (373)
 31 PTZ00004 actin; Provisional     99.2 1.2E-09 3.2E-14   91.7  16.2  307    4-375     8-348 (375)
 32 pfam06406 StbA StbA protein. T  99.2 3.5E-10 8.9E-15   95.8  13.0  204  132-371    93-316 (318)
 33 pfam00022 Actin Actin.          99.2 1.7E-09 4.4E-14   90.6  15.9  279    4-353     5-311 (369)
 34 COG4820 EutJ Ethanolamine util  99.2 4.9E-11 1.3E-15  102.3   5.9  194  119-372    77-270 (277)
 35 PRK13917 plasmid segregation p  99.0 1.4E-08 3.6E-13   83.7  14.2  179  164-379   155-339 (346)
 36 PTZ00280 actin; Provisional     99.0 5.7E-08 1.4E-12   79.1  16.1  298    1-353     1-337 (416)
 37 PTZ00281 actin; Provisional     98.9 5.3E-08 1.4E-12   79.3  13.3  306    4-375     8-349 (376)
 38 KOG0679 consensus               98.8 7.2E-07 1.8E-11   70.7  16.1  179    4-238    13-202 (426)
 39 TIGR01174 ftsA cell division p  98.6 2.4E-06 6.2E-11   66.7  12.6  179  152-358   169-363 (393)
 40 PRK10331 L-fuculokinase; Provi  98.5 8.3E-06 2.1E-10   62.7  12.9   55  328-383   389-443 (470)
 41 PRK10939 autoinducer-2 (AI-2)   98.5 3.2E-05 8.3E-10   58.2  15.9   58  322-383   407-464 (521)
 42 PTZ00294 glycerol kinase; Prov  98.4   3E-06 7.7E-11   66.0  10.2   65  315-383   403-467 (510)
 43 COG5277 Actin and related prot  98.4 1.2E-05   3E-10   61.5  12.9  192    5-238     9-204 (444)
 44 PRK04123 ribulokinase; Provisi  98.3 3.6E-05 9.3E-10   57.8  13.7   64  316-383   429-493 (542)
 45 pfam02491 FtsA Cell division p  98.3 1.8E-06 4.7E-11   67.6   6.1  140  189-356     1-157 (163)
 46 COG4972 PilM Tfp pilus assembl  98.2 0.00025 6.4E-09   51.5  16.1  204  124-377   108-335 (354)
 47 COG1924 Activator of 2-hydroxy  98.2 0.00011 2.7E-09   54.3  13.4  177  163-375   207-389 (396)
 48 pfam07520 SrfB Virulence facto  98.0 0.00029 7.4E-09   51.0  12.9  317   49-375   332-834 (999)
 49 KOG0676 consensus               98.0 0.00043 1.1E-08   49.7  13.7  280    2-353     7-315 (372)
 50 COG1070 XylB Sugar (pentulose   98.0 0.00046 1.2E-08   49.5  13.6   51  328-379   401-451 (502)
 51 TIGR01312 XylB xylulokinase; I  97.8 1.1E-05 2.8E-10   61.8   2.2  115  255-379   321-449 (494)
 52 PRK13317 pantothenate kinase;   97.7 0.00052 1.3E-08   49.1   9.6   51  325-375   218-272 (273)
 53 TIGR03192 benz_CoA_bzdQ benzoy  97.6 0.00064 1.6E-08   48.4   9.0  173  168-376   107-288 (293)
 54 COG1069 AraB Ribulose kinase [  97.5   0.008   2E-07   40.1  13.5  215  189-422   270-512 (544)
 55 KOG0797 consensus               97.5  0.0019 4.9E-08   44.8   9.9  156  107-276   194-356 (618)
 56 pfam06277 EutA Ethanolamine ut  97.4  0.0034 8.6E-08   42.9  10.7   41  182-227   138-178 (473)
 57 PRK10719 eutA reactivating fac  97.4  0.0066 1.7E-07   40.7  11.9   40  182-226   141-180 (471)
 58 pfam08841 DDR Diol dehydratase  97.1 0.00046 1.2E-08   49.5   3.8  185  162-372   109-327 (332)
 59 pfam02782 FGGY_C FGGY family o  97.1 0.00042 1.1E-08   49.8   3.3   55  318-376   137-191 (193)
 60 pfam01968 Hydantoinase_A Hydan  97.1  0.0015 3.9E-08   45.5   5.9   62  308-372   216-278 (285)
 61 pfam01869 BcrAD_BadFG BadF/Bad  97.0    0.02   5E-07   37.1  11.2   70  298-374   214-288 (288)
 62 TIGR03286 methan_mark_15 putat  96.7  0.0036 9.3E-08   42.7   5.0   46  330-375   357-402 (404)
 63 KOG2517 consensus               96.6    0.02 5.2E-07   37.0   8.6   70  309-382   398-467 (516)
 64 COG4819 EutA Ethanolamine util  96.3   0.086 2.2E-06   32.3  10.2   73  161-240   121-197 (473)
 65 PRK00047 glpK glycerol kinase;  96.2  0.0016 4.2E-08   45.3   0.9   61  320-384   398-458 (498)
 66 smart00842 FtsA Cell division   96.2   0.061 1.6E-06   33.4   8.9  155    4-178     1-186 (187)
 67 PRK00292 glk glucokinase; Prov  95.8    0.15 3.9E-06   30.4   9.6  193  159-374    87-312 (315)
 68 PRK10854 exopolyphosphatase; P  95.2    0.21 5.4E-06   29.3   8.5   54  151-205    99-155 (513)
 69 PRK10640 rhaB rhamnulokinase;   95.0   0.008   2E-07   40.1   0.7   56  327-384   374-429 (471)
 70 KOG2531 consensus               94.9   0.018 4.5E-07   37.5   2.5   54  322-376   436-489 (545)
 71 PRK11031 guanosine pentaphosph  94.9    0.23 5.9E-06   29.0   8.2   51  154-205    97-150 (494)
 72 COG4457 SrfB Uncharacterized p  94.8    0.35 8.9E-06   27.7  12.9   52  326-377   776-847 (1014)
 73 KOG0680 consensus               94.5    0.42 1.1E-05   27.1  11.3  205  136-352    94-341 (400)
 74 COG0248 GppA Exopolyphosphatas  94.3    0.37 9.4E-06   27.5   8.0   82  119-205    57-147 (492)
 75 pfam02541 Ppx-GppA Ppx/GppA ph  94.3     0.4   1E-05   27.2   8.1  105  117-230    41-150 (285)
 76 COG5026 Hexokinase [Carbohydra  93.8    0.31   8E-06   28.0   6.8   30  184-213    72-102 (466)
 77 KOG0681 consensus               93.4     0.3 7.7E-06   28.1   6.1   53  186-245   167-219 (645)
 78 COG0145 HyuA N-methylhydantoin  93.0    0.11 2.9E-06   31.4   3.4   41  164-205   254-296 (674)
 79 TIGR01315 5C_CHO_kinase FGGY-f  92.6   0.079   2E-06   32.6   2.2   62  315-378   457-518 (574)
 80 TIGR00395 leuS_arch leucyl-tRN  92.3   0.078   2E-06   32.6   1.8   88    9-99    305-402 (1109)
 81 pfam03702 UPF0075 Uncharacteri  92.1    0.35 8.9E-06   27.7   5.0   61  312-375   270-335 (363)
 82 PRK09585 anmK anhydro-N-acetyl  92.0    0.25 6.3E-06   28.8   4.1   49  327-375   285-338 (366)
 83 pfam02685 Glucokinase Glucokin  91.6       1 2.7E-05   24.0   7.1  195  159-375    88-314 (316)
 84 PRK00047 glpK glycerol kinase;  89.8    0.36 9.1E-06   27.6   3.3   20    4-23      7-26  (498)
 85 pfam00370 FGGY_N FGGY family o  89.6    0.26 6.7E-06   28.6   2.5   20    4-23      2-21  (245)
 86 TIGR02627 rhamnulo_kin rhamnul  88.1     0.3 7.7E-06   28.1   1.9  309   23-372    77-435 (460)
 87 KOG1385 consensus               87.4     2.1 5.3E-05   21.8   8.3   30  181-210   207-236 (453)
 88 PRK00109 Holliday junction res  86.0    0.98 2.5E-05   24.3   3.6   23    1-23      3-25  (141)
 89 TIGR02628 fuculo_kin_coli L-fu  85.8    0.54 1.4E-05   26.2   2.2  143  228-382   306-454 (473)
 90 COG2377 Predicted molecular ch  84.1       3 7.6E-05   20.6   5.8  180  174-375   150-342 (371)
 91 KOG0681 consensus               83.8    0.58 1.5E-05   26.0   1.6   23    4-26     25-47  (645)
 92 PRK00877 hisD histidinol dehyd  81.7     3.3 8.3E-05   20.3   4.8   49  134-182   151-200 (428)
 93 COG1548 Predicted transcriptio  81.3     3.7 9.4E-05   19.9   9.3   69  121-202    77-145 (330)
 94 COG0554 GlpK Glycerol kinase [  81.3     0.8   2E-05   25.0   1.5   66  310-379   387-452 (499)
 95 pfam00349 Hexokinase_1 Hexokin  80.6     1.6   4E-05   22.7   2.8   31  184-214    59-90  (205)
 96 TIGR01311 glycerol_kin glycero  80.6    0.78   2E-05   25.0   1.3  189  159-379   246-472 (518)
 97 PRK12447 histidinol dehydrogen  80.4     2.2 5.7E-05   21.5   3.6   48  134-182   145-193 (424)
 98 pfam00815 Histidinol_dh Histid  80.2     2.5 6.3E-05   21.2   3.7   49  134-182   137-186 (413)
 99 pfam03652 UPF0081 Uncharacteri  80.1     2.2 5.6E-05   21.6   3.4   20    3-22      2-21  (134)
100 PRK05082 N-acetylmannosamine k  79.6     1.9 4.9E-05   22.1   3.0   21    1-22      1-21  (291)
101 TIGR02668 moaA_archaeal probab  79.6     3.9 9.9E-05   19.7   4.6  116  209-351    62-185 (324)
102 KOG0677 consensus               79.1     3.5   9E-05   20.0   4.2  194  136-352   102-318 (389)
103 KOG0797 consensus               79.0    0.45 1.2E-05   26.8  -0.3   16  187-202   178-193 (618)
104 COG0141 HisD Histidinol dehydr  78.7       2 5.2E-05   21.9   2.9   48  134-182   146-194 (425)
105 COG5185 HEC1 Protein involved   78.5     4.5 0.00011   19.3  11.9   17  225-241   227-243 (622)
106 PRK13770 histidinol dehydrogen  78.2       3 7.6E-05   20.6   3.6   48  134-182   140-188 (416)
107 cd06572 Histidinol_dh Histidin  77.8     4.7 0.00012   19.1   4.9   49  134-182   122-171 (390)
108 KOG1369 consensus               77.6     4.8 0.00012   19.1   5.4   27  184-210    83-109 (474)
109 TIGR00381 cdhD CO dehydrogenas  77.6     1.7 4.3E-05   22.4   2.2  138  190-375    93-245 (401)
110 smart00732 YqgFc Likely ribonu  75.9       3 7.5E-05   20.6   3.1   21    3-23      2-22  (99)
111 COG0403 GcvP Glycine cleavage   74.4     4.4 0.00011   19.4   3.6   73  119-191    62-169 (450)
112 PRK09116 3-oxoacyl-(acyl carri  74.0     3.4 8.7E-05   20.2   3.0   52  304-355   201-254 (336)
113 cd00327 cond_enzymes Condensin  73.5     1.4 3.6E-05   23.0   1.0   50  304-353   140-191 (254)
114 TIGR00069 hisD histidinol dehy  73.4     2.6 6.6E-05   21.1   2.3   48  135-182   148-196 (435)
115 TIGR00114 lumazine-synth 6,7-d  72.2     2.4 6.1E-05   21.3   1.9   97  295-398     5-111 (148)
116 TIGR02927 SucB_Actino 2-oxoglu  72.1     6.1 0.00015   18.3   3.9   67  378-457   451-522 (607)
117 PRK05952 3-oxoacyl-(acyl carri  72.0     3.8 9.6E-05   19.8   2.8   56  308-363   251-309 (379)
118 cd00825 decarbox_cond_enzymes   71.9     3.8 9.7E-05   19.8   2.9   52  303-354   199-252 (332)
119 PRK13329 pantothenate kinase;   71.9     6.2 0.00016   18.2   3.9   23    1-24      1-23  (246)
120 PRK09698 D-allose kinase; Prov  70.0     4.2 0.00011   19.5   2.7   20    4-23      6-25  (302)
121 PRK06501 3-oxoacyl-(acyl carri  69.6     3.9  0.0001   19.7   2.5   50  305-354   285-336 (425)
122 cd00529 RuvC_resolvase Hollida  69.3     3.5 8.9E-05   20.1   2.2   19    3-21      1-19  (154)
123 COG4499 Predicted membrane pro  69.1     7.4 0.00019   17.6   4.4   15  340-354   211-225 (434)
124 COG0816 Predicted endonuclease  68.6     5.5 0.00014   18.6   3.1   22    2-23      2-23  (141)
125 PRK00865 glutamate racemase; P  68.1     3.2 8.3E-05   20.3   1.8   41  328-371   174-214 (262)
126 PRK00061 ribH riboflavin synth  68.0     2.7 6.8E-05   21.0   1.4   78  286-375     8-85  (154)
127 PRK07910 3-oxoacyl-(acyl carri  67.9     3.7 9.5E-05   19.9   2.1   50  305-354   282-333 (418)
128 PRK07103 polyketide beta-ketoa  67.8     4.6 0.00012   19.2   2.5   66  305-370   281-349 (415)
129 PRK07515 3-oxoacyl-(acyl carri  67.1     4.7 0.00012   19.1   2.5   44  308-353   270-313 (372)
130 PRK13359 beta-ketoadipyl CoA t  67.0     8.1 0.00021   17.3  10.3   65  108-172    22-93  (400)
131 COG4012 Uncharacterized protei  67.0     8.1 0.00021   17.3   5.6   57  141-204   185-244 (342)
132 PRK11267 biopolymer transport   66.9     8.1 0.00021   17.3   5.1   66  104-176    75-140 (141)
133 PRK13326 pantothenate kinase;   66.8     8.1 0.00021   17.3   3.6   25    1-25      5-29  (262)
134 COG0074 SucD Succinyl-CoA synt  66.6     8.2 0.00021   17.3   6.0   48  119-173    53-100 (293)
135 TIGR01382 PfpI intracellular p  65.6     3.1   8E-05   20.4   1.3   53  323-380    71-131 (189)
136 COG2069 CdhD CO dehydrogenase/  65.4     8.6 0.00022   17.1   3.7   58  310-374   186-251 (403)
137 COG0054 RibH Riboflavin syntha  65.3     3.7 9.4E-05   19.9   1.7   77  288-376    10-86  (152)
138 TIGR00658 orni_carb_tr ornithi  65.3     8.7 0.00022   17.1   3.6   46   66-120    90-143 (341)
139 pfam02801 Ketoacyl-synt_C Beta  65.1     3.6 9.1E-05   20.0   1.6   52  304-355    20-73  (117)
140 smart00825 PKS_KS Beta-ketoacy  64.6     4.8 0.00012   19.0   2.1   51  304-354   274-326 (424)
141 PRK08142 acetyl-CoA acetyltran  64.5       4  0.0001   19.7   1.7   17  231-247   145-161 (388)
142 pfam08735 DUF1786 Putative pyr  64.5     8.9 0.00023   17.0   8.0   96  101-205    81-183 (252)
143 cd00833 PKS polyketide synthas  64.3     5.7 0.00015   18.5   2.5   52  303-354   273-326 (421)
144 PRK09185 3-oxoacyl-(acyl carri  64.2     6.3 0.00016   18.2   2.7   58  306-363   259-319 (395)
145 COG1521 Pantothenate kinase ty  63.6     8.9 0.00023   17.0   3.4   21    4-24      2-22  (251)
146 PRK13334 consensus              63.5     8.4 0.00022   17.2   3.2   21    3-23      5-25  (262)
147 TIGR00459 aspS_bact aspartyl-t  63.1     4.8 0.00012   19.0   1.9   48  329-376   540-594 (653)
148 TIGR00329 gcp metalloendopepti  63.0     3.4 8.7E-05   20.2   1.1   48  307-354   265-312 (337)
149 COG0332 FabH 3-oxoacyl-[acyl-c  62.9     6.5 0.00017   18.0   2.6   53  295-354   213-265 (323)
150 PRK04457 spermidine synthase;   62.6     4.3 0.00011   19.4   1.6  151  167-355    48-198 (262)
151 PTZ00050 3-oxoacyl-acyl carrie  62.1     6.9 0.00018   17.8   2.6   50  305-354   335-386 (477)
152 PRK00976 hypothetical protein;  62.0     3.6 9.2E-05   20.0   1.1   56  329-386   262-319 (324)
153 PRK12566 glycine dehydrogenase  61.9     9.9 0.00025   16.7   4.2   61  118-178    65-156 (954)
154 PRK13327 pantothenate kinase;   61.9     6.5 0.00017   18.1   2.4   23    1-24      1-23  (242)
155 pfam02075 RuvC Crossover junct  61.1     6.5 0.00016   18.1   2.3   18    4-21      1-18  (148)
156 PRK00039 ruvC Holliday junctio  60.9     7.2 0.00018   17.7   2.5   21    1-21      1-21  (169)
157 PRK06158 thiolase; Provisional  60.9       4  0.0001   19.7   1.1   51  110-166    26-76  (384)
158 PRK13324 pantothenate kinase;   60.5      10 0.00027   16.5   3.4   21    4-24      2-22  (258)
159 PRK12419 riboflavin synthase s  59.7     3.8 9.6E-05   19.8   0.9   72  292-375    12-83  (158)
160 cd00832 CLF Chain-length facto  59.4     8.9 0.00023   17.0   2.7   46  309-354   270-317 (399)
161 TIGR00241 CoA_E_activ CoA-subs  59.2     6.2 0.00016   18.2   1.9   43  330-372   215-258 (259)
162 PRK12879 3-oxoacyl-(acyl carri  59.0     4.7 0.00012   19.1   1.3   45  308-355   225-269 (326)
163 PRK09352 3-oxoacyl-(acyl carri  59.0     4.8 0.00012   19.1   1.3   44  309-355   220-263 (319)
164 TIGR02324 CP_lyasePhnL phospho  58.7     5.7 0.00015   18.4   1.7   65  110-176   105-180 (224)
165 PRK06567 putative bifunctional  57.9     7.8  0.0002   17.4   2.2   18  185-202   400-417 (1048)
166 PRK13225 phosphoglycolate phos  57.8     2.5 6.5E-05   21.1  -0.3   25  313-340   199-223 (273)
167 TIGR03545 conserved hypothetic  57.7      12 0.00029   16.2   9.5   11  345-355   279-289 (554)
168 pfam00814 Peptidase_M22 Glycop  57.4     6.3 0.00016   18.1   1.7   24  329-352   182-205 (225)
169 PRK13323 consensus              57.2      12  0.0003   16.1   3.4   21    4-24      2-22  (258)
170 PRK09604 putative DNA-binding/  56.9      12  0.0003   16.1  11.5  138  188-353   128-283 (335)
171 TIGR03281 methan_mark_12 putat  56.9     5.3 0.00014   18.7   1.2   55  329-385   263-320 (326)
172 PRK13332 consensus              56.9      12  0.0003   16.1   3.5   21    4-24      2-22  (251)
173 pfam01150 GDA1_CD39 GDA1/CD39   56.8     8.2 0.00021   17.3   2.2   18  186-203   159-176 (424)
174 PRK13330 consensus              56.5      12 0.00031   16.0   3.3   21    4-24      2-22  (257)
175 PRK05963 3-oxoacyl-(acyl carri  56.0     5.2 0.00013   18.8   1.1   51  305-358   224-274 (327)
176 PRK06445 acetyl-CoA acetyltran  55.9      12 0.00031   15.9  10.1   52  108-164    28-83  (394)
177 pfam09726 Macoilin Transmembra  55.5      12 0.00032   15.9   7.3   12  529-540   490-501 (680)
178 TIGR01314 gntK_FGGY gluconate   54.9      11 0.00029   16.2   2.6   56  329-385   403-458 (506)
179 pfam03309 Bvg_acc_factor Borde  54.3      13 0.00033   15.8   3.2   21    4-24      1-21  (206)
180 pfam02347 GDC-P Glycine cleava  54.2      13 0.00033   15.8   4.5   73  119-191    52-159 (429)
181 PRK06840 hypothetical protein;  54.0     6.1 0.00016   18.2   1.2   51  308-361   236-286 (337)
182 PRK05367 glycine dehydrogenase  53.9      13 0.00034   15.7   5.3   59  119-177    67-156 (955)
183 cd00828 elong_cond_enzymes "el  53.6      13 0.00034   15.7   2.9   46  309-354   274-321 (407)
184 PRK06333 3-oxoacyl-(acyl carri  53.6      10 0.00025   16.6   2.2   47  308-354   287-335 (424)
185 TIGR01166 cbiO cobalt ABC tran  53.1      14 0.00034   15.6   3.0  111   45-175    46-157 (190)
186 PRK13311 N-acetyl-D-glucosamin  53.1      13 0.00034   15.7   2.8   20    4-23      2-21  (256)
187 PRK13321 pantothenate kinase;   52.8      14 0.00035   15.6   3.2   21    4-24      2-22  (256)
188 PRK07204 3-oxoacyl-(acyl carri  52.3      11 0.00027   16.4   2.2   45  309-356   230-274 (329)
189 TIGR00461 gcvP glycine dehydro  52.2       5 0.00013   18.9   0.5   46  140-185    91-156 (965)
190 PRK08313 acetyl-CoA acetyltran  52.2     6.8 0.00017   17.9   1.2   39  110-149    23-62  (391)
191 cd00834 KAS_I_II Beta-ketoacyl  52.0     9.7 0.00025   16.7   1.9   46  309-354   275-322 (406)
192 PRK13310 N-acetyl-D-glucosamin  51.6      14 0.00036   15.5   2.8   46  329-374   246-300 (302)
193 TIGR00744 ROK_glcA_fam ROK fam  50.9      12 0.00032   15.9   2.3   47  305-354   236-285 (326)
194 PRK06816 3-oxoacyl-(acyl carri  50.9     6.5 0.00017   18.0   0.9   41  309-349   272-313 (378)
195 KOG2411 consensus               50.9       6 0.00015   18.3   0.7   26  329-354   519-546 (628)
196 cd00830 KAS_III Ketoacyl-acyl   50.6     9.3 0.00024   16.9   1.7   46  309-357   223-268 (320)
197 PRK13318 pantothenate kinase;   50.4      15 0.00038   15.3   3.5   21    4-24      2-22  (258)
198 KOG2525 consensus               50.3      15 0.00038   15.3   9.6  130  102-269   115-253 (496)
199 TIGR01642 U2AF_lg U2 snRNP aux  50.2      15 0.00038   15.3   4.6   17  333-352   338-360 (577)
200 TIGR02074 PBP_1a_fam penicilli  49.7      11 0.00029   16.2   2.0   43  107-163    93-144 (700)
201 TIGR01129 secD protein-export   49.6      15 0.00039   15.2   2.8   10  136-145   132-141 (522)
202 PRK07314 3-oxoacyl-(acyl carri  49.3      13 0.00033   15.8   2.2   46  309-354   276-323 (411)
203 PRK06364 consensus              49.2     7.8  0.0002   17.4   1.1   16  231-246   151-166 (389)
204 PRK12880 3-oxoacyl-(acyl carri  49.1     7.1 0.00018   17.8   0.9   46  307-355   240-285 (353)
205 COG4598 HisP ABC-type histidin  49.0      11 0.00028   16.3   1.8  101  113-214   119-233 (256)
206 cd03141 GATase1_Hsp31_like Typ  48.9     8.5 0.00022   17.1   1.3   60  311-375    73-138 (221)
207 PRK08234 consensus              48.8      16  0.0004   15.2  10.4   65  108-172    22-93  (400)
208 TIGR00956 3a01205 Pleiotropic   48.8      10 0.00026   16.5   1.7   16  361-376   500-515 (1466)
209 PTZ00187 succinyl-CoA syntheta  48.6      16  0.0004   15.1   2.9   49  120-175    69-117 (309)
210 PRK09258 3-oxoacyl-(acyl carri  48.6       7 0.00018   17.8   0.8   44  309-355   240-283 (339)
211 COG0304 FabB 3-oxoacyl-(acyl-c  48.5      12 0.00031   16.0   2.0   49  307-355   274-324 (412)
212 PRK09557 fructokinase; Reviewe  48.3      16  0.0004   15.1   3.6   20    5-24      3-22  (301)
213 pfam00885 DMRL_synthase 6,7-di  48.2     5.5 0.00014   18.6   0.2   73  292-376     5-77  (144)
214 cd00831 CHS_like Chalcone and   47.9     7.5 0.00019   17.6   0.8   48  308-355    86-134 (361)
215 TIGR03031 cas_csx12 CRISPR-ass  47.7      16 0.00041   15.0   2.9   55    5-64      2-61  (802)
216 COG0533 QRI7 Metal-dependent p  47.6     7.7  0.0002   17.5   0.9   40  309-353   247-286 (342)
217 PRK13319 consensus              47.5      16 0.00042   15.0   3.4   21    4-24      2-22  (258)
218 TIGR02666 moaA molybdenum cofa  47.4      16 0.00042   15.0   5.0  104  208-337    61-171 (346)
219 TIGR02982 heterocyst_DevA ABC   47.2      12  0.0003   16.1   1.8  130   19-176    28-172 (220)
220 pfam08904 DUF1849 Domain of un  47.1      13 0.00032   15.8   1.9   20  461-480   209-228 (252)
221 PRK13642 cbiO cobalt transport  46.9       8  0.0002   17.4   0.8   36  141-176   136-171 (277)
222 cd01400 6PGL 6PGL: 6-Phosphogl  46.0      10 0.00027   16.5   1.3   17  332-348    27-43  (219)
223 TIGR03150 fabF 3-oxoacyl-[acyl  45.9      15 0.00037   15.4   2.1   45  310-354   276-322 (407)
224 cd00827 init_cond_enzymes "ini  45.8     8.9 0.00023   17.0   0.9   50  306-355    47-98  (324)
225 PRK13650 cbiO cobalt transport  45.4     8.6 0.00022   17.1   0.8   36  141-176   133-168 (276)
226 PRK07710 acetolactate synthase  45.3      18 0.00045   14.8   7.1   61  137-201    32-93  (571)
227 PRK03011 butyrate kinase; Prov  45.1      12 0.00031   16.0   1.6   44  328-371   296-343 (356)
228 PRK06059 lipid-transfer protei  44.8      13 0.00032   15.8   1.6   15  232-246   147-161 (399)
229 TIGR01935 NOT-MenG RraA family  44.5      11 0.00028   16.3   1.3   19  331-349    60-80  (155)
230 PRK08722 3-oxoacyl-(acyl carri  44.2      13 0.00034   15.7   1.6   44  311-354   280-325 (414)
231 PRK13640 cbiO cobalt transport  44.2     9.4 0.00024   16.8   0.9   38  139-176   138-175 (283)
232 PRK06289 acetyl-CoA acetyltran  43.4     7.2 0.00018   17.7   0.2   16  231-246   152-167 (408)
233 cd06409 PB1_MUG70 The MUG70 pr  43.1      19 0.00048   14.5   3.5   78   89-172     1-86  (86)
234 PRK09605 O-sialoglycoprotein e  42.8     7.9  0.0002   17.4   0.3  132  189-354   127-272 (536)
235 PRK13633 cobalt transporter AT  42.8      11 0.00029   16.2   1.1   35  142-176   142-176 (281)
236 PRK01005 V-type ATP synthase s  42.7      19 0.00049   14.5  10.6   11  508-518    41-51  (208)
237 PRK13639 cbiO cobalt transport  42.7      10 0.00026   16.6   0.8   35  142-176   134-168 (275)
238 pfam08541 ACP_syn_III_C 3-Oxoa  42.5      13 0.00034   15.7   1.4   35  319-356     1-35  (90)
239 TIGR01795 CM_mono_cladeE chori  42.1      19  0.0005   14.4   3.2   41  225-265    13-65  (94)
240 PTZ00340 O-sialoglycoprotein e  41.7      20  0.0005   14.4   8.0   38  312-354   256-293 (348)
241 PRK08768 consensus              41.7      19  0.0005   14.4   2.2   46  309-354   277-324 (411)
242 PRK06064 acetyl-CoA acetyltran  41.4      11 0.00028   16.3   0.9   55  109-165    19-75  (389)
243 pfam05262 Borrelia_P83 Borreli  41.3      20 0.00051   14.4   8.7   66  331-396    68-143 (489)
244 cd03226 ABC_cobalt_CbiO_domain  41.3      11 0.00028   16.3   0.8   36  141-176   122-157 (205)
245 KOG2314 consensus               41.3      20 0.00051   14.3   3.8   26  550-575   596-621 (698)
246 COG5016 Pyruvate/oxaloacetate   41.1     6.5 0.00016   18.1  -0.4   76  187-267    41-137 (472)
247 PRK13631 cbiO cobalt transport  41.0      12 0.00032   15.9   1.1   36  141-176   172-207 (320)
248 PRK08131 acetyl-CoA acetyltran  41.0      20 0.00051   14.3  10.8   64  108-172    22-92  (401)
249 TIGR02845 spore_V_AD stage V s  40.9      11 0.00027   16.4   0.7   44  312-356   207-252 (331)
250 PRK10908 cell division protein  40.9      13 0.00034   15.6   1.2   37  140-176   132-168 (222)
251 PRK13651 cobalt transporter AT  40.7      13 0.00033   15.8   1.1   36  141-176   157-192 (304)
252 PRK10771 thiQ thiamine transpo  40.7      11 0.00027   16.4   0.7   36  141-176   125-160 (233)
253 cd03234 ABCG_White The White s  40.6      13 0.00032   15.9   1.0   35  142-176   140-174 (226)
254 PRK13635 cbiO cobalt transport  40.4      11 0.00029   16.2   0.8   36  141-176   136-171 (279)
255 PRK06157 acetyl-CoA acetyltran  40.4     8.4 0.00021   17.2   0.1   40  234-276   150-189 (400)
256 PRK13769 histidinol dehydrogen  40.1      21 0.00053   14.2   3.1   45  134-181   120-165 (368)
257 TIGR01499 folC FolC bifunction  40.0      21 0.00053   14.2   5.8  136  101-269    64-207 (460)
258 PRK05678 succinyl-CoA syntheta  40.0      20  0.0005   14.4   2.0   50  119-175    53-102 (289)
259 PRK11629 lolD lipoprotein tran  39.9      11 0.00028   16.3   0.7   36  141-176   141-176 (233)
260 COG0072 PheT Phenylalanyl-tRNA  39.8      21 0.00054   14.2   4.2   17  499-515   622-638 (650)
261 TIGR01175 pilM type IV pilus a  39.7      21 0.00054   14.2   5.2  190  154-377   150-363 (381)
262 COG1129 MglA ABC-type sugar tr  39.6      21 0.00052   14.3   2.0   54  121-176   120-176 (500)
263 cd03215 ABC_Carb_Monos_II This  39.4      13 0.00032   15.9   0.9   36  141-176   100-135 (182)
264 COG4172 ABC-type uncharacteriz  38.9      19 0.00049   14.5   1.8   37  140-176   152-188 (534)
265 PRK10846 bifunctional folylpol  38.8      22 0.00055   14.1   2.4   53  172-229   127-183 (416)
266 pfam00480 ROK ROK family.       38.8      22 0.00055   14.1   8.1   35  162-197    94-130 (181)
267 PRK13643 cbiO cobalt transport  38.7      14 0.00037   15.4   1.1   36  141-176   140-175 (288)
268 PRK13636 cbiO cobalt transport  38.6      14 0.00035   15.6   1.0   36  141-176   137-172 (285)
269 cd03235 ABC_Metallic_Cations A  38.6      12  0.0003   16.1   0.6   35  142-176   129-163 (213)
270 TIGR00747 fabH 3-oxoacyl-(acyl  38.1      22 0.00057   14.0   2.9   83  302-388   222-314 (329)
271 PRK13646 cbiO cobalt transport  38.1      15 0.00039   15.3   1.1   36  141-176   141-176 (286)
272 KOG1939 consensus               38.0     9.4 0.00024   16.8   0.1   20  185-204   303-322 (1247)
273 PRK06365 acetyl-CoA acetyltran  37.9      16  0.0004   15.1   1.2   39  231-276   146-184 (415)
274 PRK07855 lipid-transfer protei  37.9      19 0.00047   14.6   1.6   15  233-247   151-165 (386)
275 cd03255 ABC_MJ0796_Lo1CDE_FtsE  37.8      15 0.00038   15.3   1.1   36  141-176   136-171 (218)
276 COG5418 Predicted secreted pro  37.8      17 0.00044   14.8   1.4   72  260-336    30-104 (164)
277 PRK10584 putative ABC transpor  37.4      16 0.00042   15.0   1.2   37  140-176   141-177 (228)
278 PRK08256 lipid-transfer protei  37.3     9.2 0.00023   16.9  -0.1   58  108-167    18-75  (391)
279 PRK11124 artP arginine transpo  37.3      15 0.00037   15.4   1.0   37  140-176   136-172 (242)
280 PRK13637 cbiO cobalt transport  37.2      14 0.00037   15.4   0.9   36  141-176   140-175 (287)
281 PRK07516 acetyl-CoA acetyltran  37.2     9.6 0.00025   16.7   0.0   32  110-142    20-51  (389)
282 cd06151 YjgF_YER057c_UK114_lik  37.0      21 0.00055   14.1   1.8   46  310-355    45-97  (126)
283 cd03261 ABC_Org_Solvent_Resist  36.8      16  0.0004   15.2   1.0   37  140-176   131-167 (235)
284 TIGR02142 modC_ABC molybdate A  36.7      12  0.0003   16.1   0.4   85   70-176    74-162 (361)
285 cd03225 ABC_cobalt_CbiO_domain  36.6      14 0.00035   15.6   0.7   36  141-176   130-165 (211)
286 pfam02970 TBCA Tubulin binding  36.5      23  0.0006   13.8   8.1   68  507-575     9-79  (90)
287 PRK13649 cbiO cobalt transport  36.3      16  0.0004   15.1   1.0   35  142-176   142-176 (280)
288 PRK00409 recombination and DNA  36.2      24  0.0006   13.8  12.7   18  107-124    82-101 (780)
289 COG2192 Predicted carbamoyl tr  36.1      24  0.0006   13.8  11.4   48  329-376   286-335 (555)
290 TIGR01282 nifD nitrogenase mol  36.1       4  0.0001   19.6  -2.1  129  217-351   216-361 (521)
291 COG3426 Butyrate kinase [Energ  36.1      22 0.00057   14.0   1.7  201  140-371   121-343 (358)
292 cd06427 CESA_like_2 CESA_like_  36.0      24 0.00061   13.8   3.7   21  173-193    72-92  (241)
293 pfam01385 Transposase_2 Probab  35.9      24 0.00061   13.8   2.9   11  188-198   124-134 (226)
294 cd03293 ABC_NrtD_SsuB_transpor  35.9      15 0.00038   15.3   0.8   40  137-176   123-162 (220)
295 PRK13644 cbiO cobalt transport  35.8      16 0.00041   15.1   1.0   39  138-176   129-167 (274)
296 PRK09052 acetyl-CoA acetyltran  35.8      24 0.00061   13.7  10.7   72  108-179    27-106 (399)
297 PRK13331 pantothenate kinase;   35.5      24 0.00062   13.7   3.4   21    4-24      9-29  (251)
298 pfam06008 Laminin_I Laminin Do  35.5      24 0.00062   13.7  11.5   74  501-574   118-203 (263)
299 PRK00560 molybdopterin-guanine  35.2      18 0.00046   14.7   1.1   12  327-338     7-18  (196)
300 PRK13361 molybdenum cofactor b  35.1      25 0.00063   13.7   5.4  104  209-338    61-168 (329)
301 PRK09533 bifunctional transald  34.7      19 0.00049   14.4   1.3   45  324-371   450-503 (950)
302 TIGR01198 pgl 6-phosphoglucono  34.7      19 0.00048   14.5   1.2   44  302-350     7-50  (251)
303 pfam09861 DUF2088 Uncharacteri  34.7      12 0.00031   16.0   0.2   61  309-371    71-139 (203)
304 PRK13645 cbiO cobalt transport  34.5      17 0.00044   14.8   1.0   35  142-176   147-181 (289)
305 TIGR02707 butyr_kinase butyrat  34.5      23 0.00058   13.9   1.6  193  140-370   118-341 (353)
306 PRK06065 acetyl-CoA acetyltran  34.4      12 0.00031   16.0   0.2   38  111-149    29-67  (393)
307 PRK09493 glnQ glutamine ABC tr  34.3      19 0.00048   14.6   1.1   41  136-176   127-167 (240)
308 cd03260 ABC_PstB_phosphate_tra  34.3      18 0.00046   14.7   1.1   34  143-176   139-172 (227)
309 PRK13652 cbiO cobalt transport  34.1      15 0.00039   15.2   0.7   35  142-176   134-168 (277)
310 PRK10744 phosphate transporter  34.0      20 0.00051   14.3   1.2   35  142-176   150-184 (257)
311 CHL00203 fabH 3-oxoacyl-acyl-c  33.9      17 0.00043   14.9   0.8   50  305-357   222-271 (327)
312 PRK13634 cbiO cobalt transport  33.8      18 0.00046   14.7   1.0   35  142-176   129-163 (276)
313 PRK13546 teichoic acids export  33.7      19 0.00049   14.5   1.1   35  142-176   140-174 (264)
314 PRK11153 metN DL-methionine tr  33.6      19 0.00048   14.6   1.0   37  140-176   135-171 (343)
315 PRK09580 sufC cysteine desulfu  33.5      20 0.00052   14.3   1.2   35  142-176   142-176 (248)
316 cd03292 ABC_FtsE_transporter F  33.5      16 0.00041   15.0   0.7   37  140-176   131-167 (214)
317 PRK13322 pantothenate kinase;   33.4      26 0.00066   13.5   3.8   20    4-23      2-21  (252)
318 cd03244 ABCC_MRP_domain2 Domai  33.3      20 0.00051   14.4   1.1   38  139-176   133-170 (221)
319 COG0285 FolC Folylpolyglutamat  33.3      26 0.00067   13.5   8.5  130  101-269    86-222 (427)
320 PRK13647 cbiO cobalt transport  33.3      18 0.00046   14.7   0.9   36  141-176   134-169 (273)
321 PRK13648 cbiO cobalt transport  33.2      19 0.00049   14.5   1.0   36  141-176   138-173 (269)
322 pfam05378 Hydant_A_N Hydantoin  33.1      26 0.00067   13.4   2.8   17    5-21      2-18  (175)
323 cd03258 ABC_MetN_methionine_tr  33.0      21 0.00054   14.1   1.2   37  140-176   135-171 (233)
324 PRK08223 hypothetical protein;  32.9      26 0.00067   13.4   5.1   52  137-200   119-170 (287)
325 PRK11701 phnK phosphonates tra  32.9      18 0.00046   14.7   0.8   36  141-176   147-182 (258)
326 PRK04311 selenocysteine syntha  32.7      20 0.00052   14.3   1.1   17  333-349   178-194 (465)
327 PRK08979 acetolactate synthase  32.6      27 0.00068   13.4   4.1   61  137-201    20-82  (572)
328 PRK12578 acetyl-CoA acetyltran  32.6      12 0.00032   15.9  -0.0   54  109-164    18-71  (385)
329 TIGR01137 cysta_beta cystathio  32.5      25 0.00063   13.7   1.5  171  137-347    90-291 (527)
330 PRK13632 cbiO cobalt transport  32.5      19 0.00049   14.5   0.9   37  140-176   138-174 (273)
331 PRK06363 consensus              32.4      13 0.00034   15.6   0.1   52  111-164    21-74  (387)
332 KOG2697 consensus               32.4      27 0.00069   13.4   4.2   20  261-280   221-240 (446)
333 cd03218 ABC_YhbG The ABC trans  32.3      17 0.00044   14.8   0.7   36  141-176   129-164 (232)
334 pfam03841 SelA L-seryl-tRNA se  32.2      27 0.00069   13.3   4.7   41  187-227   170-220 (367)
335 cd03265 ABC_DrrA DrrA is the A  32.1      18 0.00045   14.8   0.7   36  141-176   127-162 (220)
336 cd03147 GATase1_Ydr533c_like T  31.9      27  0.0007   13.3   1.8   60  312-376    78-143 (231)
337 pfam00005 ABC_tran ABC transpo  31.9      22 0.00057   14.0   1.2   33  142-174    87-119 (119)
338 COG0635 HemN Coproporphyrinoge  31.9      27  0.0007   13.3   2.7   16  141-156    96-111 (416)
339 COG0173 AspS Aspartyl-tRNA syn  31.8      28  0.0007   13.3   1.7   26  329-354   477-504 (585)
340 COG1101 PhnK ABC-type uncharac  31.8      26 0.00067   13.4   1.5   30  145-176   148-179 (263)
341 PRK10619 histidine/lysine/argi  31.6      22 0.00057   14.0   1.2   36  141-176   148-183 (257)
342 PRK11231 fecE iron-dicitrate t  31.5      22 0.00057   14.0   1.1   35  142-176   135-169 (255)
343 PRK10575 iron-hydroxamate tran  31.5      19  0.0005   14.4   0.8   35  142-176   144-178 (265)
344 cd03220 ABC_KpsT_Wzt ABC_KpsT_  31.4      22 0.00056   14.0   1.1   33  143-175   140-172 (224)
345 TIGR01068 thioredoxin thioredo  31.3      28 0.00071   13.2   1.8   25   30-55     63-90  (101)
346 TIGR03410 urea_trans_UrtE urea  31.3      20 0.00052   14.3   0.9   34  143-176   129-162 (230)
347 cd06154 YjgF_YER057c_UK114_lik  31.0      26 0.00067   13.4   1.4   45  310-354    48-93  (119)
348 PRK11247 ssuB aliphatic sulfon  30.9      19 0.00049   14.4   0.7   36  141-176   129-164 (257)
349 PRK13328 pantothenate kinase;   30.9      28 0.00072   13.2   4.1   21    4-24      3-23  (255)
350 PTZ00107 hexokinase; Provision  30.9      28 0.00073   13.2   5.4   29  184-212    93-122 (485)
351 PRK11264 putative amino-acid A  30.9      21 0.00055   14.1   1.0   36  141-176   138-173 (248)
352 cd03264 ABC_drug_resistance_li  30.7      22 0.00055   14.1   1.0   34  142-175   127-160 (211)
353 cd03236 ABC_RNaseL_inhibitor_d  30.5      20  0.0005   14.4   0.7   35  142-176   136-170 (255)
354 cd03256 ABC_PhnC_transporter A  30.5      26 0.00065   13.5   1.3   37  140-176   139-175 (241)
355 pfam07066 Phage_Lacto_M3 Lacto  30.4      29 0.00074   13.1   2.8   13    1-13      1-13  (162)
356 PRK11831 putative ABC transpor  30.3      22 0.00057   14.0   1.0   35  141-175   140-174 (269)
357 PRK10253 iron-enterobactin tra  30.2      22 0.00057   14.0   1.0   36  141-176   139-174 (265)
358 cd00829 SCP-x_thiolase Thiolas  30.2      14 0.00035   15.5  -0.1   55  109-165    13-67  (375)
359 CHL00099 ilvB acetohydroxyacid  30.1      29 0.00075   13.1   6.6   65  137-201    25-90  (588)
360 PRK11300 livG leucine/isoleuci  30.1      21 0.00054   14.2   0.8   36  141-176   149-184 (255)
361 cd03257 ABC_NikE_OppD_transpor  30.0      24 0.00061   13.8   1.1   35  142-176   142-176 (228)
362 KOG1504 consensus               30.0      29 0.00075   13.1   5.4   38  331-370   192-235 (346)
363 cd03237 ABC_RNaseL_inhibitor_d  30.0      23 0.00058   13.9   0.9   34  143-176   113-146 (246)
364 cd03214 ABC_Iron-Siderophores_  29.9      21 0.00054   14.2   0.8   35  142-176    94-128 (180)
365 cd03298 ABC_ThiQ_thiamine_tran  29.7      21 0.00053   14.2   0.7   36  141-176   124-159 (211)
366 cd03290 ABCC_SUR1_N The SUR do  29.7      25 0.00064   13.6   1.2   34  143-176   138-171 (218)
367 PRK11308 dppF dipeptide transp  29.6      25 0.00064   13.6   1.1   36  141-176   150-185 (327)
368 COG1123 ATPase components of v  29.6      29 0.00074   13.1   1.5   37  140-176   149-185 (539)
369 pfam00195 Chal_sti_synt_N Chal  29.5      24  0.0006   13.8   1.0   62  311-372   106-171 (228)
370 PRK11614 livF leucine/isoleuci  29.5      24 0.00062   13.7   1.0   34  143-176   135-168 (237)
371 cd03259 ABC_Carb_Solutes_like   29.5      26 0.00066   13.5   1.2   36  141-176   126-161 (213)
372 PRK11178 uridine phosphorylase  29.4      29 0.00074   13.1   1.4   28  323-350     8-38  (251)
373 PRK04262 hypothetical protein;  29.1      25 0.00064   13.6   1.1   44  308-354   208-251 (346)
374 cd03213 ABCG_EPDR ABCG transpo  29.1      22 0.00057   14.0   0.8   30  146-175   112-141 (194)
375 PRK08963 fadI 3-ketoacyl-CoA t  29.1      30 0.00077   13.0   9.7   52  108-164    33-87  (436)
376 KOG2912 consensus               29.1      18 0.00047   14.6   0.4   14  185-198    98-113 (419)
377 PRK11636 mrcA peptidoglycan sy  29.1      30 0.00078   13.0   2.6   41  108-148   152-211 (850)
378 PRK13641 cbiO cobalt transport  28.9      24 0.00061   13.8   0.9   36  141-176   141-176 (286)
379 cd03254 ABCC_Glucan_exporter_l  28.9      25 0.00063   13.6   1.0   36  141-176   135-170 (229)
380 pfam02543 CmcH_NodU Carbamoylt  28.8      18 0.00046   14.7   0.3   48  331-378   166-215 (360)
381 CHL00131 ycf16 sulfate ABC tra  28.6      25 0.00064   13.6   1.0   32  145-176   150-181 (252)
382 cd03222 ABC_RNaseL_inhibitor T  28.6      26 0.00065   13.5   1.0   31  146-176    72-102 (177)
383 PRK09984 phosphonate/organopho  28.5      22 0.00055   14.1   0.6   36  141-176   148-183 (262)
384 PRK13542 consensus              28.5      25 0.00063   13.7   0.9   35  141-175   143-177 (224)
385 KOG1159 consensus               28.4      31 0.00079   12.9   1.4   24  188-216   217-241 (574)
386 PRK01911 ppnK inorganic polyph  28.0      28 0.00072   13.2   1.2   35  373-413   193-227 (290)
387 PRK10247 putative ABC transpor  28.0      26 0.00065   13.5   1.0   37  140-176   131-168 (225)
388 cd03221 ABCF_EF-3 ABCF_EF-3  E  27.9      32 0.00081   12.8   1.5   32  144-175    69-100 (144)
389 cd03266 ABC_NatA_sodium_export  27.8      29 0.00074   13.1   1.2   36  141-176   132-167 (218)
390 PRK11022 dppD dipeptide transp  27.7      22 0.00057   14.0   0.6   36  141-176   149-184 (327)
391 cd03297 ABC_ModC_molybdenum_tr  27.7      22 0.00056   14.0   0.6   36  141-176   127-162 (214)
392 cd03224 ABC_TM1139_LivF_branch  27.6      23 0.00059   13.8   0.7   35  142-176   129-163 (222)
393 PRK05790 acetyl-CoA acetyltran  27.4      22 0.00057   14.0   0.6   55  108-164    22-76  (393)
394 PRK06689 consensus              27.4      32 0.00083   12.8  10.4   53  108-164    22-76  (391)
395 KOG1394 consensus               27.3      16  0.0004   15.2  -0.3   45  310-354   302-348 (440)
396 PRK10895 putative ABC transpor  27.3      23 0.00059   13.9   0.6   36  141-176   133-168 (241)
397 PRK10261 glutathione transport  27.2      27 0.00069   13.4   0.9   37  140-176   163-199 (623)
398 cd00826 nondecarbox_cond_enzym  27.1      17 0.00043   14.9  -0.1   50  110-160    21-73  (393)
399 pfam02803 Thiolase_C Thiolase,  27.1      19 0.00049   14.5   0.2   28  312-339    25-52  (123)
400 PRK09473 oppD oligopeptide tra  27.0      26 0.00065   13.5   0.8   37  140-176   156-192 (330)
401 TIGR03269 met_CoM_red_A2 methy  26.9      25 0.00064   13.6   0.8   37  140-176   163-199 (520)
402 PRK11248 tauB taurine transpor  26.8      25 0.00063   13.7   0.7   36  141-176   124-159 (255)
403 PRK13538 cytochrome c biogenes  26.7      25 0.00065   13.6   0.7   33  143-175   127-159 (204)
404 PRK10418 nikD nickel transport  26.6      27 0.00069   13.3   0.9   36  141-176   136-171 (254)
405 cd03262 ABC_HisP_GlnQ_permease  26.6      28  0.0007   13.3   0.9   37  140-176   130-166 (213)
406 cd03270 ABC_UvrA_I The excisio  26.6      32 0.00081   12.8   1.2   35  142-176   134-170 (226)
407 TIGR00713 hemL glutamate-1-sem  26.6      30 0.00076   13.0   1.1   49  161-210   102-157 (434)
408 cd03296 ABC_CysA_sulfate_impor  26.5      24 0.00062   13.7   0.6   36  141-176   132-167 (239)
409 TIGR02026 BchE magnesium-proto  26.4      15 0.00039   15.2  -0.4   60  255-344   229-288 (506)
410 cd03238 ABC_UvrA The excision   26.4      30 0.00077   13.0   1.1   33  144-176    86-120 (176)
411 TIGR01689 EcbF-BcbF capsule bi  26.3      31 0.00079   12.9   1.1   42   88-129    77-121 (126)
412 smart00035 CLa CLUSTERIN alpha  26.2      34 0.00086   12.6   1.6   25  247-271    61-85  (216)
413 PRK00164 moaA molybdenum cofac  26.2      34 0.00086   12.6   3.9   99  212-336    70-172 (334)
414 TIGR03411 urea_trans_UrtD urea  26.2      27 0.00069   13.4   0.8   35  142-176   140-174 (242)
415 cd03299 ABC_ModC_like Archeal   26.0      26 0.00066   13.5   0.7   36  141-176   125-160 (235)
416 pfam10452 TCO89 TORC1 subunit   26.0      34 0.00087   12.6   1.4   37  160-197    58-95  (457)
417 PRK13541 cytochrome c biogenes  26.0      25 0.00064   13.6   0.6   32  144-175   122-153 (195)
418 PRK07800 consensus              26.0      25 0.00062   13.7   0.5   52  108-164    22-76  (393)
419 PRK10535 macrolide transporter  26.0      27 0.00069   13.3   0.8   38  139-176   138-175 (648)
420 KOG0994 consensus               26.0      34 0.00087   12.6  10.6   12  557-568  1621-1632(1758)
421 COG0309 HypE Hydrogenase matur  25.9      25 0.00063   13.6   0.6   11  155-165   115-125 (339)
422 PRK06845 consensus              25.8      34 0.00088   12.6  11.7   56  108-164    22-77  (392)
423 cd03232 ABC_PDR_domain2 The pl  25.8      28 0.00073   13.2   0.9   31  146-176   109-139 (192)
424 PRK07418 acetolactate synthase  25.8      34 0.00088   12.6   5.5   65  137-201    35-100 (615)
425 cd03263 ABC_subfamily_A The AB  25.8      26 0.00066   13.5   0.6   36  141-176   129-164 (220)
426 cd03250 ABCC_MRP_domain1 Domai  25.8      32 0.00082   12.8   1.1   33  144-176   126-158 (204)
427 KOG0445 consensus               25.8      25 0.00065   13.6   0.6   13  184-196   368-380 (919)
428 COG1134 TagH ABC-type polysacc  25.7      35 0.00088   12.5   2.0   22  498-519   115-136 (249)
429 PRK13540 cytochrome c biogenes  25.7      28 0.00071   13.3   0.8   33  144-176   126-158 (200)
430 PRK06504 acetyl-CoA acetyltran  25.5      24 0.00062   13.7   0.5   64  108-172    22-92  (390)
431 cd03217 ABC_FeS_Assembly ABC-t  25.4      31  0.0008   12.9   1.0   33  144-176   103-135 (200)
432 PRK09050 beta-ketoadipyl CoA t  25.4      35 0.00089   12.5   9.4   71  108-179    22-101 (401)
433 cd03267 ABC_NatA_like Similar   25.3      26 0.00066   13.5   0.6   31  145-175   153-183 (236)
434 PRK12820 bifunctional aspartyl  25.1      35  0.0009   12.5   1.6   18  552-569   628-645 (706)
435 PRK06569 F0F1 ATP synthase sub  25.1      35  0.0009   12.5  11.7   39  508-548    54-92  (157)
436 cd03247 ABCC_cytochrome_bd The  25.1      35 0.00089   12.5   1.2   33  144-176    97-129 (178)
437 TIGR02148 Fibro_Slime fibro-sl  24.9      31 0.00079   12.9   0.9   12  188-199    36-47  (92)
438 PRK07124 consensus              24.8      26 0.00067   13.5   0.5   49  108-157    22-73  (402)
439 pfam08392 FAE1_CUT1_RppA FAE1/  24.8      34 0.00087   12.6   1.1   56  292-354    75-131 (290)
440 TIGR01930 AcCoA-C-Actrans acet  24.8      36 0.00091   12.4   3.6   70  106-179    18-99  (447)
441 pfam04684 BAF1_ABF1 BAF1 / ABF  24.7      29 0.00073   13.2   0.7   10   85-94     65-74  (508)
442 PRK07937 lipid-transfer protei  24.7      18 0.00047   14.6  -0.3   13  184-196   100-112 (352)
443 cd01684 Tet_like_IV EF-G_domai  24.6      29 0.00075   13.1   0.7   51  112-162    53-115 (115)
444 TIGR02902 spore_lonB ATP-depen  24.6      25 0.00064   13.6   0.4  185  120-371    43-276 (532)
445 cd03369 ABCC_NFT1 Domain 2 of   24.6      36 0.00092   12.4   1.3   33  143-175   123-155 (207)
446 TIGR03608 L_ocin_972_ABC putat  24.5      31 0.00079   12.9   0.9   36  141-176   130-165 (206)
447 KOG1002 consensus               24.5      36 0.00092   12.4   1.5   42  503-546   618-659 (791)
448 PRK07850 acetyl-CoA acetyltran  24.3      27  0.0007   13.3   0.5   52  108-164    22-77  (387)
449 TIGR02171 Fb_sc_TIGR02171 Fibr  24.3      37 0.00093   12.4   1.5   15  184-198   525-539 (982)
450 cd03268 ABC_BcrA_bacitracin_re  24.3      31  0.0008   12.9   0.8   33  143-175   124-156 (208)
451 cd03135 GATase1_DJ-1 Type 1 gl  24.2      37 0.00093   12.4   1.7   47  324-375    56-108 (163)
452 cd03233 ABC_PDR_domain1 The pl  24.2      35 0.00089   12.5   1.1   33  144-176   117-149 (202)
453 cd00267 ABC_ATPase ABC (ATP-bi  24.1      33 0.00084   12.7   0.9   31  146-176    81-111 (157)
454 cd03295 ABC_OpuCA_Osmoprotecti  24.0      29 0.00074   13.1   0.6   36  141-176   131-166 (242)
455 PRK13547 hmuV hemin importer A  23.9      33 0.00083   12.7   0.9   34  143-176   143-186 (273)
456 PRK11867 2-oxoglutarate ferred  23.9      37 0.00093   12.4   1.1   32  312-343    28-59  (280)
457 PRK13543 cytochrome c biogenes  23.9      30 0.00076   13.0   0.7   34  142-175   134-167 (214)
458 PRK02726 molybdopterin-guanine  23.8      37 0.00095   12.3   1.4   13  327-339     6-18  (200)
459 pfam08759 DUF1792 Domain of un  23.8      37 0.00095   12.3   2.5   54  140-196   144-198 (225)
460 PRK07801 acetyl-CoA acetyltran  23.8      28 0.00071   13.2   0.5   71  108-179    22-100 (382)
461 COG1117 PstB ABC-type phosphat  23.8      37 0.00095   12.3   1.7   31  145-175   149-179 (253)
462 PRK10851 sulfate/thiosulfate t  23.7      32 0.00081   12.8   0.8   36  141-176   132-167 (352)
463 PRK09536 btuD corrinoid ABC tr  23.5      33 0.00085   12.7   0.8   34  143-176   136-169 (409)
464 cd03248 ABCC_TAP TAP, the Tran  23.4      37 0.00095   12.3   1.1   38  139-176   144-181 (226)
465 cd03231 ABC_CcmA_heme_exporter  23.4      32 0.00083   12.8   0.8   33  144-176   124-156 (201)
466 PRK11607 potG putrescine trans  23.4      31  0.0008   12.9   0.7   36  141-176   145-180 (377)
467 cd03300 ABC_PotA_N PotA is an   23.3      31 0.00078   12.9   0.6   37  140-176   125-161 (232)
468 PRK07491 consensus              23.2      30 0.00075   13.1   0.5   52  108-164    23-77  (392)
469 PRK12330 oxaloacetate decarbox  23.2      38 0.00097   12.2   2.4   74  189-267    42-136 (499)
470 cd03269 ABC_putative_ATPase Th  23.2      29 0.00074   13.1   0.5   35  141-175   124-158 (210)
471 PRK06690 acetyl-CoA acetyltran  23.2      27  0.0007   13.3   0.4   50  108-164    21-70  (361)
472 KOG3179 consensus               23.2      26 0.00067   13.5   0.3   10  366-375    99-108 (245)
473 PRK01231 ppnK inorganic polyph  23.1      38 0.00097   12.2   1.1   24  374-397   195-218 (296)
474 TIGR02247 HAD-1A3-hyp Epoxide   23.1      37 0.00094   12.3   1.0   80  116-201    69-158 (228)
475 PRK11000 maltose/maltodextrin   23.0      33 0.00083   12.7   0.7   36  141-176   129-164 (369)
476 COG4328 Predicted nuclease (RN  23.0      38 0.00096   12.2   1.0   10    1-11      1-10  (266)
477 PRK13320 pantothenate kinase;   22.9      39 0.00099   12.2   3.7   21    4-24      5-25  (245)
478 KOG0612 consensus               22.9      39 0.00099   12.2  10.0   24  212-235   246-270 (1317)
479 cd03246 ABCC_Protease_Secretio  22.9      34 0.00088   12.5   0.8   31  146-176    97-127 (173)
480 TIGR01368 CPSaseIIsmall carbam  22.5      39   0.001   12.1   4.7   56  137-196   135-206 (383)
481 PRK10419 nikE nickel transport  22.5      38 0.00096   12.3   1.0   36  141-176   147-182 (266)
482 PRK09065 glutamine amidotransf  22.3      40   0.001   12.1   1.5   53  325-382    53-112 (238)
483 PRK10818 cell division inhibit  22.2      40   0.001   12.1   1.4   15  186-200    31-47  (270)
484 cd03216 ABC_Carb_Monos_I This   22.1      37 0.00094   12.3   0.8   32  145-176    82-113 (163)
485 COG0796 MurI Glutamate racemas  22.1      40   0.001   12.1   1.3   41  329-372   178-218 (269)
486 TIGR01124 ilvA_2Cterm threonin  22.1      40   0.001   12.1   2.6   47  329-375   169-216 (508)
487 PRK09452 potA putrescine/sperm  22.1      40   0.001   12.1   1.3   36  141-176   143-178 (378)
488 PRK10030 putative peptidoglyca  22.1      40   0.001   12.1   1.6   16  340-355   158-173 (199)
489 PRK08235 acetyl-CoA acetyltran  22.0      28 0.00072   13.2   0.2   20  315-334   297-316 (393)
490 TIGR01234 L-ribulokinase L-rib  21.9      30 0.00076   13.0   0.3   63  313-379   445-508 (563)
491 cd06150 YjgF_YER057c_UK114_lik  21.8      40   0.001   12.0   1.1   52  308-359    31-85  (105)
492 PRK13548 hmuV hemin importer A  21.8      35 0.00088   12.5   0.7   33  143-175   132-170 (257)
493 PRK08947 fadA 3-ketoacyl-CoA t  21.8      26 0.00067   13.4   0.0   20  315-334   288-307 (387)
494 cd00751 thiolase Thiolase are   21.7      25 0.00065   13.6  -0.0   22  313-334    28-49  (386)
495 cd06477 ACD_HspB3_Like Alpha c  21.7      23 0.00058   13.9  -0.3   27  459-485    57-83  (83)
496 PTZ00287 6-phosphofructokinase  21.6      41   0.001   12.0   2.5   98   22-128   980-1080(1439)
497 cd03301 ABC_MalK_N The N-termi  21.6      35 0.00089   12.5   0.6   33  143-175   128-160 (213)
498 cd01680 EFG_like_IV Elongation  21.6      41   0.001   12.0   2.3   51  112-162    53-116 (116)
499 PRK07025 consensus              21.5      22 0.00056   14.0  -0.4   20  315-334   297-316 (393)
500 cd03294 ABC_Pro_Gly_Bertaine T  21.5      33 0.00083   12.7   0.5   33  143-175   158-190 (269)

No 1  
>TIGR02350 prok_dnaK chaperone protein DnaK; InterPro: IPR012725    Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes, the grpE protein is a co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold . DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle.    Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for the Mycoplasma sequence) found clustered with other genes of this systems. This entry excludes DnaK homologues that are not DnaK itself, such as the heat shock cognate protein HscA (IPR010236 from INTERPRO). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of DnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; the lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=100.00  E-value=0  Score=1370.63  Aligned_cols=596  Identities=66%  Similarity=1.026  Sum_probs=586.3

Q ss_pred             CEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHH
Q ss_conf             16998048660699999899559975689862562799994899899667898633308351100206754986872678
Q gi|255764494|r    3 KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTV   82 (652)
Q Consensus         3 ~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~   82 (652)
                      +|||||||||||||||+.+|.|.||+|.+|.|+|||+|+|.++|+++||..|++|++.||.+||+++||+||+.|.  .+
T Consensus         1 KiiGIDLGTTNS~vAV~eGg~p~Vi~n~EG~rTtPS~VAF~~~Ge~lVG~~AkRQAv~NP~~Ti~siKR~~G~~~~--e~   78 (598)
T TIGR02350         1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRKFK--EV   78 (598)
T ss_pred             CEEEEECCCCCEEEEEEECCCCEEECCCCCCCCCCCEEEECCCCCEECCHHHHHHHHHCHHHHHHHHHHHHCCCHH--HH
T ss_conf             9677304741016877866866685078879546617898489877714154134320734799999877377616--88


Q ss_pred             HHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf             76520198699975998279995795871999999999999999999838847336985377887402578863442112
Q gi|255764494|r   83 AKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAG  162 (652)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AG  162 (652)
                      ....+..||+++...++.+.+.+.+|.|+|+||+|+||++||..||.|||.+|+.+||||||||+|+||+||+||++|||
T Consensus        79 ~~~~~~~py~vv~~~~~~~~~~~~~K~y~P~eISA~iL~klk~~AE~yLGe~v~~AVITVPAYFnDaQR~ATKdAG~IAG  158 (598)
T TIGR02350        79 KEEAKRVPYKVVEGDNGDVRVEVRGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAG  158 (598)
T ss_pred             HHHHHHCCEEEEECCCCEEEEEECCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf             98985198478854886489996186107177999999999999998628530225777115677135688986310058


Q ss_pred             CCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             22222221024788886034456550799872441145431010231465420133224552134476655367876420
Q gi|255764494|r  163 LDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKE  242 (652)
Q Consensus       163 l~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~  242 (652)
                      |+|+|+||||||||||||+++..+..|||||+|||||||||+++.+|+|+|+||.||++|||+|||+.|++|+..+|++.
T Consensus       159 L~V~RIINEPTAAALAYGldk~~~~~i~VfDLGGGTFDvSILe~gdG~feV~sT~GDt~LGGdDFD~~Iidwl~~~fk~~  238 (598)
T TIGR02350       159 LEVLRIINEPTAAALAYGLDKKKDEKILVFDLGGGTFDVSILEIGDGVFEVKSTAGDTHLGGDDFDERIIDWLADEFKKE  238 (598)
T ss_pred             CEEEEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             31377417713898860557667867999975888324688875686899985168887875205799999999998876


Q ss_pred             C-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHH
Q ss_conf             1-343024478999999999988541155650358630443467887212687311000012342000011001111010
Q gi|255764494|r  243 N-GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQD  321 (652)
Q Consensus       243 ~-~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~  321 (652)
                      + ++|++.|..|++||+.+|||||+.||+..++.|++|++..+..|++++..+|||++||+|+.+|++++..||+++|.+
T Consensus       239 ~~GiDL~~D~~ALQRL~eAAEkAKieLS~~~~T~InLPFIT~~~~GP~hL~~~LtRA~fe~l~~dLv~~~~~p~~~aL~D  318 (598)
T TIGR02350       239 EQGIDLSKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADASGPKHLELTLTRAKFEELTADLVERTKEPVRQALKD  318 (598)
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             33888112478988889999886585256636664155364288887013203357789999999999989999999975


Q ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC-CCCHHEECCCCCCCCCCCCC
Q ss_conf             13563110146630785305677886541011111113565310111110002234675-22100002356653222334
Q gi|255764494|r  322 AGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGD-VKDLLLLDVTPLSLGIETLG  400 (652)
Q Consensus       322 a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~-~~~~~~~dv~p~slgie~~~  400 (652)
                      |++++++|+.|+||||+||||.|++.++++||+++.+++||||+||+|||+||++|.|+ ++|++|+||+|+||||||.|
T Consensus       319 A~l~~~~I~~v~LVGG~TRiP~V~~~V~~~~GK~p~~~vNPDEvVAiGAAiQgGVL~Gd~vkDvlLLDVTPLsLGiET~G  398 (598)
T TIGR02350       319 AGLSASDIDEVILVGGSTRIPAVQELVKEFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDEVKDVLLLDVTPLSLGIETLG  398 (598)
T ss_pred             CCCCHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHH
T ss_conf             37884366668985588412489999998729887888880588888788875431787044489861356511013010


Q ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHH
Q ss_conf             20246633898110245665456764122211000012222222223345310245676744353200001001100122
Q gi|255764494|r  401 GVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQ  480 (652)
Q Consensus       401 ~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGil~  480 (652)
                      |+|++||.|||+||++|+++|+|+.|||++|.|+|+||||.++.||+.||+|.|.||||+|||.|||+|||+||+||||+
T Consensus       399 GV~T~lI~RNTTIP~~KsqvFSTA~DnQ~~V~I~VlQGER~~A~DNk~LG~F~L~GI~paPRG~PQIEVTFDIDANGIl~  478 (598)
T TIGR02350       399 GVMTKLIERNTTIPTKKSQVFSTAADNQPAVEIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILH  478 (598)
T ss_pred             HHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEEEEECCHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEEECCCCEEE
T ss_conf             01311102677447534520323056895679998608813344024436621068888956887557876525884488


Q ss_pred             HHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             21023444200000000000112456689999999989998999999999999999999999999872202998999999
Q gi|255764494|r  481 VSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSI  560 (652)
Q Consensus       481 Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~~i  560 (652)
                      |+|.|+.||+++.|+|+.+++||++||+||++||+.|+++|+..|+.+|+||++|+++|++++.|.+.+++++.++++.+
T Consensus       479 V~AkD~~TgK~q~I~I~~~s~Ls~~Ei~rm~~eAe~~~~~D~~~~E~~e~rN~ad~~~y~~e~~l~e~gd~~~~~~k~~~  558 (598)
T TIGR02350       479 VSAKDKATGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEVEARNEADSLIYQAEKTLKEAGDKLPAEEKEKI  558 (598)
T ss_pred             EEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             98865477850047881278988899999999999989863888888875336899999999998742101477889999


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999987248987899999999999999999999998
Q gi|255764494|r  561 RESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYE  601 (652)
Q Consensus       561 ~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~  601 (652)
                      +..++++++++.+.+.... ++.+.++|++..++++..+|+
T Consensus       559 ~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~~~~~~~~~~~  598 (598)
T TIGR02350       559 EKAVAELKEALKGEDVEEK-IKAKTEELQKALQKLAEALYA  598 (598)
T ss_pred             HHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999850464789-999999999999999997349


No 2  
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00  E-value=0  Score=1302.54  Aligned_cols=630  Identities=67%  Similarity=1.043  Sum_probs=605.5

Q ss_pred             CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf             98169980486606999998995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS   80 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~   80 (652)
                      ||+|||||||||||+||++++|.|+||+|.+|+|+|||+|+|.++++++||+.|++++.+||+|||+++|||||+.|+|+
T Consensus         1 M~~VIGIDLGTTnS~VAv~~~g~~~iI~n~~G~r~tPSvV~f~~~g~~lVG~~Ak~~~~~nP~nti~~~KRliG~~~~d~   80 (631)
T PRK00290          1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGKRTTPSVVAFTKDGEILVGQPAKRQAVTNPENTIYSIKRLMGRRFEEE   80 (631)
T ss_pred             CCCEEEEECCHHCEEEEEEECCEEEEEECCCCCEECCEEEEEECCCCEEECHHHHHHHHHCCCCEEHHHHHHHCCCCCCH
T ss_conf             99889998580208999998998899988999973588999989998993489998667684001045488728988737


Q ss_pred             HHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             78765201986999759982799957958719999999999999999998388473369853778874025788634421
Q gi|255764494|r   81 TVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRI  160 (652)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~  160 (652)
                      .++...+.+||+++.. ++.+.+.+.++.|+|+||+||+|++||+.|+.++|.++++||||||+||++.||+|+++||++
T Consensus        81 ~vq~~~~~~p~~v~~~-~~~~~v~~~~k~~sPeEIsA~IL~~Lk~~Ae~~lg~~v~~aVITVPAyFnd~QRqAtk~Aa~i  159 (631)
T PRK00290         81 EVQKDIKLVPYKIVKD-NGDAWVEADGKKYTPQEISAMILQKLKKTAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKI  159 (631)
T ss_pred             HHHHHHHCCCEEEEEC-CCCEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             7876530487489825-992599989989859999999999999999997189878789998999998999999999997


Q ss_pred             CCCCCCCCCCCHHHHHHHHHCCCC-CCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             122222222102478888603445-6550799872441145431010231465420133224552134476655367876
Q gi|255764494|r  161 AGLDVLRIINEPTAAALAYGLDKK-DARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTF  239 (652)
Q Consensus       161 AGl~v~~li~EptAAal~Y~~~~~-~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~  239 (652)
                      |||+|+|||||||||||+||+++. .++++||||||||||||||+++.+|+|+|+++.||++|||+|||++|++||+++|
T Consensus       160 AGL~VlrlInEPTAAAlAYgldk~~~~~~vlVyDlGGGTfDVSIl~~~~g~feVlat~GD~~LGG~DfD~~i~~~l~~~f  239 (631)
T PRK00290        160 AGLEVLRIINEPTAAALAYGLDKKEGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLVDEF  239 (631)
T ss_pred             CCCCEEEEECCHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             59965764246999981640565689748999988986188898993399899999348888382899999999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf             42013430244789999999999885411556503586304434678872126873110000123420000110011110
Q gi|255764494|r  240 KKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCL  319 (652)
Q Consensus       240 ~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L  319 (652)
                      ++++++|++.++++++||+.+||+||+.||++.+++|++|++..+..++.+|+.+|||++||++|.|+++|+..+|+++|
T Consensus       240 k~~~~idl~~d~~al~rL~~aaEkaK~~LS~~~~a~i~l~~i~~~~~g~~~~~~~iTR~~FE~l~~~l~~r~~~~v~~aL  319 (631)
T PRK00290        240 KKEQGIDLRKDKMALQRLKEAAEKAKIELSSSQQTEINLPFITADASGPKHLDLKLTRAKFEELTEDLVERTIEPCRQAL  319 (631)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87618875677999999999999999970658726998402335788865799997899999989999999999999999


Q ss_pred             HHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCCC
Q ss_conf             10135631101466307853056778865410111111135653101111100022346752210000235665322233
Q gi|255764494|r  320 QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETL  399 (652)
Q Consensus       320 ~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~~  399 (652)
                      ++|++++++|+.|+|||||||||+||++|+++||+++++++|||||||+|||+||++|++++++++++||+|+|||||+.
T Consensus       320 ~~A~l~~~dId~ViLVGGsTRiP~Vq~~v~~~Fgk~~~~~inPDeaVA~GAAiqa~iLsg~~~d~~LlDVtPlSLGiet~  399 (631)
T PRK00290        320 KDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAVGAAIQGGVLAGDVKDVLLLDVTPLSLGIETL  399 (631)
T ss_pred             HHHCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEC
T ss_conf             98089822215999917824567999999999688977796912689987999998863876673689603453137863


Q ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHH
Q ss_conf             42024663389811024566545676412221100001222222222334531024567674435320000100110012
Q gi|255764494|r  400 GGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIV  479 (652)
Q Consensus       400 ~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGil  479 (652)
                      ||.|++||||||+||++++++|+|+.|||+.+.|+||||||.++++|++||+|+|.||||+|+|.|+|+|||++|.||||
T Consensus       400 gg~~~~iI~rNt~IP~~~s~~FtT~~D~Q~~v~I~V~qGEr~~~~dN~~Lg~f~l~gippap~G~~~I~Vtf~iD~nGil  479 (631)
T PRK00290        400 GGVMTKLIERNTTIPTKKSQVFSTAEDNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIL  479 (631)
T ss_pred             CCEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEE
T ss_conf             97479963179836821216623404799638999995676546788578899987989788999718999998799559


Q ss_pred             HHHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             22102344420000000000011245668999999998999899999999999999999999999987220299899999
Q gi|255764494|r  480 QVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKS  559 (652)
Q Consensus       480 ~Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~~  559 (652)
                      +|+|.|+.||++++|+|+++++||++||++|+++|+.++++|++.|+++|+||++|+|||++++.|+++++++++++|+.
T Consensus       480 ~VsA~d~~tg~~~~i~i~~~~~ls~~ei~~m~~~a~~~~~~D~~~~~~~e~~n~~e~~i~~~~~~l~~~~~~~~~~~k~~  559 (631)
T PRK00290        480 HVSAKDKGTGKEQKITIKASSGLSEEEIERMVKDAEANAEEDKKRKEEVEARNQADSLIYQTEKQLKELGDKVPADEKEK  559 (631)
T ss_pred             EEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             99999757797126999479998999999999999988998999999999999999999999999986352099999999


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEECCC
Q ss_conf             9999999999872489878999999999999999999999984034455666666655556666786665433562352
Q gi|255764494|r  560 IRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKDD  638 (652)
Q Consensus       560 i~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dad~e~v~~~  638 (652)
                      ++.+++++++||+++  |...++.++++|++.++++++++|+++....+.     ....+.....|+++||||++++++
T Consensus       560 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  631 (631)
T PRK00290        560 IEAAIKELKEALKGE--DKEAIKAKTEELQQASQKLGEAMYQQAAAAAAG-----AAAGASAAKDDDVVDAEFEEVKDK  631 (631)
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCCCCCCCCCCCEECCCEEECCCC
T ss_conf             999999999987558--999999999999999999999999855478999-----998877888898224715874779


No 3  
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00  E-value=0  Score=1292.56  Aligned_cols=609  Identities=58%  Similarity=0.950  Sum_probs=592.2

Q ss_pred             CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf             98169980486606999998995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS   80 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~   80 (652)
                      |++|||||||||||+||++++|.|+||+|.+|+|.|||+|+|.++++++||+.|++++.+||+|||+++||||||+|+|+
T Consensus         1 M~~VIGIDLGTTnS~VAv~~~G~~~iI~n~~G~r~tPSvV~f~~~ge~lVG~~Ak~q~~~nP~nTi~~~KRliGr~~~d~   80 (655)
T PRK13411          1 MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWEDT   80 (655)
T ss_pred             CCCEEEEECCHHHEEEEEEECCEEEEEECCCCCEECCEEEEEECCCCEEECHHHHHHHHHCCCCEEHHHHHHCCCCCCHH
T ss_conf             99869998680338999998998899887999923167999989997994789998657582035046587609996025


Q ss_pred             HHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             78765201986999759982799957958719999999999999999998388473369853778874025788634421
Q gi|255764494|r   81 TVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRI  160 (652)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~  160 (652)
                      ..  ..+++||+++++.++.+.+.+.++.|+|+||+||+|++||+.||.++|.+|++|||||||||++.||+||++||++
T Consensus        81 ~~--~~~~~py~vv~~~~~~v~v~i~~k~~sPeEIsA~IL~~LK~~AE~~lg~~v~~AVITVPAyFnd~QRqAtkdAa~i  158 (655)
T PRK13411         81 EE--ERSRVPYKCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTI  158 (655)
T ss_pred             HH--HHHCCCEEEEECCCCCEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             77--8643983799779983799989989869999999999999999998589988599998999998999999999997


Q ss_pred             CCCCCCCCCCCHHHHHHHHHCCCC-CCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             122222222102478888603445-6550799872441145431010231465420133224552134476655367876
Q gi|255764494|r  161 AGLDVLRIINEPTAAALAYGLDKK-DARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTF  239 (652)
Q Consensus       161 AGl~v~~li~EptAAal~Y~~~~~-~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~  239 (652)
                      |||+|+|||||||||||+||+++. .+++|||||||||||||||+++.+|+|+|++++||++|||+|||++|++||+++|
T Consensus       159 AGL~VlRLINEPTAAALAYGldk~~~~~~vlVyDLGGGTfDVSIl~i~~GvfeVlaT~GD~~LGG~DfD~~Lv~~l~~~f  238 (655)
T PRK13411        159 AGLEVLRIINEPTAAALAYGLDKQDQEQRILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENF  238 (655)
T ss_pred             CCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             59960444354779999961646788737999977996376678872198899999506887584888999999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf             42013430244789999999999885411556503586304434678872126873110000123420000110011110
Q gi|255764494|r  240 KKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCL  319 (652)
Q Consensus       240 ~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L  319 (652)
                      ++++++|++.|+++++||+.+||+||+.||++.++.+++|++..+..++.+|+.+|||++||++|.|+++|++.||+++|
T Consensus       239 ~~~~~iDl~~d~~al~rLr~aaEkAK~~LS~~~~t~i~l~~i~~d~~g~~~l~~~lTR~~FE~L~~~L~~rt~~pv~~aL  318 (655)
T PRK13411        239 QQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELAKDLVEATIEPVQQAL  318 (655)
T ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77415774329999999999999999983766606897312225678873689997099999999999999998899999


Q ss_pred             HHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCC
Q ss_conf             101356311014663078530567788654101-1111113565310111110002234675221000023566532223
Q gi|255764494|r  320 QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFF-NKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIET  398 (652)
Q Consensus       320 ~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~f-g~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~  398 (652)
                      ++|++++++||.|+|||||||||+||+.|+++| |+++.+++|||||||+|||+||++|++++++++++||+|+|||||+
T Consensus       319 ~dA~l~~~dId~ViLVGGSTRIP~Vq~~v~~~F~gk~~~~~iNPDEaVA~GAAiqa~iL~g~~~d~~llDV~PlsLGiet  398 (655)
T PRK13411        319 KDAGLTPEDIDRIILVGGSTRIPAVQEAIQQFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIET  398 (655)
T ss_pred             HHHCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEE
T ss_conf             98099831178999988814657999999998289988889782168988699988875377554389984272368897


Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHH
Q ss_conf             34202466338981102456654567641222110000122222222233453102456767443532000010011001
Q gi|255764494|r  399 LGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGI  478 (652)
Q Consensus       399 ~~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGi  478 (652)
                      .||.|++||||||+||++++++|+|+.|||+.+.|+||||||.++++|++||+|.|.||||+|+|.|+|+|||++|.|||
T Consensus       399 ~gg~~~~iI~rnt~iP~~~~~~ftT~~D~Qt~v~i~V~qGEr~~~~dn~~Lg~f~l~gipp~p~G~~~I~Vtf~id~nGi  478 (655)
T PRK13411        399 LGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGI  478 (655)
T ss_pred             CCCEEEECCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCHHHHHCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCC
T ss_conf             69765304789881571130564604689846999860673124514875669998288977899975999999859986


Q ss_pred             HHHHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             22210234442000000000001124566899999999899989999999999999999999999998722029989999
Q gi|255764494|r  479 VQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQK  558 (652)
Q Consensus       479 l~Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~  558 (652)
                      |+|+|.|+.||++++|+|+++++||++||++|++++++++++|++.|+++++||++|+|+|++++.|+++++++++++|+
T Consensus       479 l~VsA~d~~tg~~~~i~i~~~~~Ls~~ei~~m~~~a~~~~~~D~~~~e~~e~~n~~e~~i~~~~~~l~~~~~~~~~~~k~  558 (655)
T PRK13411        479 LKVSAQDQGTGREQSIRITNTGGLSSSEIERMRQEAEKYAEEDRRRKQLVELKNQADSLLYSYESTLKENGELISEELKQ  558 (655)
T ss_pred             EEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             89999974779834079936999799999999999997598789999999989899999999999988503409999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99999999999872489878999999999999999999999984034455666
Q gi|255764494|r  559 SIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAAD  611 (652)
Q Consensus       559 ~i~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~~~~~  611 (652)
                      .++.+++++++||++++.+..+++.+.++|++.+++++.++|++.+.+....+
T Consensus       559 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~  611 (655)
T PRK13411        559 RAEQKVEQLAAALTDPNISLEELRQQLEEFRQVLLAIGAEVYQQGNSQTDTEQ  611 (655)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999999999976899388999999999999999999999986244533358


No 4  
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00  E-value=0  Score=1293.76  Aligned_cols=608  Identities=59%  Similarity=0.958  Sum_probs=589.5

Q ss_pred             CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf             98169980486606999998995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS   80 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~   80 (652)
                      +++|||||||||||+||++++|.|+||+|+.|+|.|||+|+|.+ ++++||+.|++++.+||.|||+++||||||.|+|+
T Consensus        26 ~g~VIGIDLGTTnS~VAv~~~g~~~II~N~~G~r~tPSvV~f~~-~e~lVG~~Ak~~~~~nP~nTi~~~KRliGr~f~d~  104 (657)
T PTZ00186         26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKG-SEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDE  104 (657)
T ss_pred             CCCEEEEECCCCCEEEEEEECCEEEEEECCCCCCCCCEEEEECC-CCEEEHHHHHHHHHHCCHHHHHHHHHHHCCCCCCH
T ss_conf             88789996386447899998998899888999944165999889-98885599998778682504999998708988867


Q ss_pred             HHHHHHHCCCEEEEECCCCEEEEEE-CCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             7876520198699975998279995-795871999999999999999999838847336985377887402578863442
Q gi|255764494|r   81 TVAKDASLVPFKIVEGKGGDAWIEA-QGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGR  159 (652)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~  159 (652)
                      .++.+.+++||+++...++.+.+.. .++.|+|+||+||+|++||+.||.++|.+|++|||||||||++.||+||++||+
T Consensus       105 ~vq~~~k~~py~i~~~~~g~~~v~~~~gk~~sPeeIsA~IL~kLK~~AE~~lg~~V~~AVITVPAyFnd~QR~AtkdAa~  184 (657)
T PTZ00186        105 HIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGT  184 (657)
T ss_pred             HHHHHHHCCCEEEEECCCCCEEEEECCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             88876524984899879996468958976884999999999999999999858997719999589899899999999999


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             11222222221024788886034456550799872441145431010231465420133224552134476655367876
Q gi|255764494|r  160 IAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTF  239 (652)
Q Consensus       160 ~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~  239 (652)
                      +|||+|+|||||||||||+||+++..+++|||||||||||||||+++.+|+|+|+++.||++|||+|||.+|++||+++|
T Consensus       185 iAGL~VlrlInEPTAAALAYGl~~~~~~~vlVyDLGGGTfDVSIl~~~~g~feVlat~GD~~LGG~DfD~~i~~~~~~~f  264 (657)
T PTZ00186        185 IAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEF  264 (657)
T ss_pred             HCCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             84994110005577999982566678847999987996178899999788689984468877676899999999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf             42013430244789999999999885411556503586304434678872126873110000123420000110011110
Q gi|255764494|r  240 KKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCL  319 (652)
Q Consensus       240 ~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L  319 (652)
                      ++++++|++.++++++||+.+||+||+.||++.++++++++++.+..++.++.++|||++||++|.|+++|++.+|+++|
T Consensus       265 ~~~~~id~~~~~~al~rL~~aaEkaK~~LS~~~~~~i~l~~i~~~~dg~~~~~~~iTR~eFE~L~~~Ll~rt~~~v~~aL  344 (657)
T PTZ00186        265 RKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCM  344 (657)
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88639985306999999999999999970766222456540014789872469997599998688999999999999999


Q ss_pred             HHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCCC
Q ss_conf             10135631101466307853056778865410111111135653101111100022346752210000235665322233
Q gi|255764494|r  320 QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETL  399 (652)
Q Consensus       320 ~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~~  399 (652)
                      ++|++++++||.|+|||||||||.||++|+++||+++++++|||||||+|||+||++|++++++++++||+|+|||||+.
T Consensus       345 ~dAgl~~~dId~VILVGGSTRIP~Vq~~l~~~Fgkep~~~iNPDEaVA~GAAiqa~iL~g~~~~~~LlDVtPlSLGiet~  424 (657)
T PTZ00186        345 KDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETL  424 (657)
T ss_pred             HHHCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEEC
T ss_conf             98189987800899957841547999999998589977797911899998999888763875534899855551799971


Q ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHH
Q ss_conf             42024663389811024566545676412221100001222222222334531024567674435320000100110012
Q gi|255764494|r  400 GGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIV  479 (652)
Q Consensus       400 ~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGil  479 (652)
                      ||.|++||||||+||++++++|+|+.|||+.+.|+||||||.++.+|+.||+|.|.||||+|+|.|+|+|+|++|+||||
T Consensus       425 gg~~~~iI~RNT~IP~~ks~~FtT~~DnQt~v~I~V~QGEr~~~~dN~~LG~F~L~gIppap~G~p~IeVtF~iD~nGiL  504 (657)
T PTZ00186        425 GGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGIC  504 (657)
T ss_pred             CCEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCE
T ss_conf             86688623699815721268778647895078999957987211578378899981889888999849999995598725


Q ss_pred             HHHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             22102344420000000000011245668999999998999899999999999999999999999987220299899999
Q gi|255764494|r  480 QVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKS  559 (652)
Q Consensus       480 ~Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~~  559 (652)
                      +|+|.|+.||++++|+|+++++||++||++|+++|++|+++|++.|+++|+||++|+|||++|++|++. +++++++|+.
T Consensus       505 ~VsA~d~~Tgk~~~i~I~~~~gLs~~ei~~mi~ea~~~~~~D~~~re~~e~kn~~e~~i~~~~~~l~~~-~~~~~~~k~~  583 (657)
T PTZ00186        505 HVTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW-KYVSDAEKEN  583 (657)
T ss_pred             EEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHH
T ss_conf             889998688975148980799979999999999999889988999999998888999999999764020-3599889999


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             999999999987248987899999999999999999999998403445566
Q gi|255764494|r  560 IRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAA  610 (652)
Q Consensus       560 i~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~~~~  610 (652)
                      ++.+++++++|+.+.+.....++.+.++|++.++++++++|++.+.+.+..
T Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~  634 (657)
T PTZ00186        584 VKTLVAELRKAMENPNVAKDDLAAATDKLQKAVMECGRTEYQQAAAANSGS  634 (657)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             999999999997489847899999999999999999999998611678999


No 5  
>CHL00094 dnaK heat shock protein 70
Probab=100.00  E-value=0  Score=1258.82  Aligned_cols=620  Identities=59%  Similarity=0.919  Sum_probs=597.1

Q ss_pred             CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf             98169980486606999998995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS   80 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~   80 (652)
                      |++|||||||||||+||++++|+|+||+|++|+|.|||+|+|.++++++||..|++++.+||+|||+++|||||++|++ 
T Consensus         1 M~~VIGIDlGTTnS~VAv~~~g~~~iI~n~~g~r~tPSvV~f~~~~~~lvG~~Ak~~~~~np~nti~~~KRliGr~~~d-   79 (622)
T CHL00094          1 MGKVVGIDLGTTNSVVAVMEGGKPTVITNAEGFRTTPSVVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFEE-   79 (622)
T ss_pred             CCCEEEEECCHHCEEEEEEECCEEEEEECCCCCEEECEEEEEECCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCCHHH-
T ss_conf             9988999758020899999899889998899995205799998999899459999877768402525889874898177-


Q ss_pred             HHHHHHHCCCEEEEECCCCEEEEEE--CCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             7876520198699975998279995--79587199999999999999999983884733698537788740257886344
Q gi|255764494|r   81 TVAKDASLVPFKIVEGKGGDAWIEA--QGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAG  158 (652)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa  158 (652)
                       ++...+.+||++..+.++.+.+..  .++.|+|+||+||+|++||+.|+.++|.+|++||||||+||++.||+|+++||
T Consensus        80 -v~~~~~~~p~~v~~~~~g~~~v~~~~~~k~~speeisA~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~d~QR~At~~Aa  158 (622)
T CHL00094         80 -ISDESKQVPYKVKKDQNGNIKIECPALNKEFAPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAG  158 (622)
T ss_pred             -HHHHHHHCCCEEEECCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             -7888874994799779994799975788189699999999999999999984898676899989989979999999999


Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             21122222222102478888603445655079987244114543101023146542013322455213447665536787
Q gi|255764494|r  159 RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT  238 (652)
Q Consensus       159 ~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~  238 (652)
                      ++|||+|+|||||||||||+||+++..+++|||||||||||||||+++.+|+|+|+++.||++|||+|||.+|++||+++
T Consensus       159 ~iAGl~vlrlInEPTAAAlaYg~~~~~~~~vlVyDlGGGTfDvSil~~~~g~~eVlat~GD~~LGG~DfD~~i~~~l~~~  238 (622)
T CHL00094        159 KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVDWLIDE  238 (622)
T ss_pred             HHCCCCEEEEECCHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             87197425541616899999604457897699998898648877788618839999941798757789999999999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             64201343024478999999999988541155650358630443467887212687311000012342000011001111
Q gi|255764494|r  239 FKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKC  318 (652)
Q Consensus       239 ~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~  318 (652)
                      |+++|++|++.|+++++||+.+||++|+.||++.++++++|++..+..++.+|+.+|||++||++|+|+++|+..+|+++
T Consensus       239 f~~k~~id~~~d~~a~~rL~~aaEkaK~~LS~~~~~~i~l~~i~~~~dg~~~~~~~itR~~FE~l~~~l~~r~~~~v~~~  318 (622)
T CHL00094        239 FKKKEGIDLKKDRQALQRLTEAAEKAKIELSNVTQTEINLPFITATPTGPKHLEKTLTRAKFEELCSDLIDRCRIPVENA  318 (622)
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             86642134344799999999999999997588765047731332577887045789739999989999999999999999


Q ss_pred             CHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCC
Q ss_conf             01013563110146630785305677886541011111113565310111110002234675221000023566532223
Q gi|255764494|r  319 LQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIET  398 (652)
Q Consensus       319 L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~  398 (652)
                      |++|++++++|+.|+|||||||||+||++|+++||+++.+++|||||||+|||+||++|++++++++++||+|+|||||+
T Consensus       319 L~~a~l~~~dId~ViLVGGstRiP~V~~~l~~~fgk~~~~~inpDeaVA~GAAiqa~~ls~~~~~~~l~Dv~PlslGie~  398 (622)
T CHL00094        319 LKDAKLDKSDIDEVVLVGGSTRIPAIQELVKSLLGKDPNQSVNPDEVVAIGAAIQAGVLAGEVKDILLLDVTPLSLGVET  398 (622)
T ss_pred             HHHCCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEE
T ss_conf             99819998894399993881256789999999858996779681589999899986765486553599998445178897


Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHH
Q ss_conf             34202466338981102456654567641222110000122222222233453102456767443532000010011001
Q gi|255764494|r  399 LGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGI  478 (652)
Q Consensus       399 ~~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGi  478 (652)
                      .||.|++||||||+||++++++|+|+.|||+.+.|+||||||.++.+|++||+|+|.||||+|+|.|+|+|||++|.|||
T Consensus       399 ~gg~~~~ii~rnt~iP~~~~~~ftt~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gipp~p~G~~~I~Vtf~id~nGi  478 (622)
T CHL00094        399 LGGVMTKIIPRNTTIPTKKSEIFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGI  478 (622)
T ss_pred             CCCEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCC
T ss_conf             29835776238986786554011565889844899972365010044857859999288978899984999999758886


Q ss_pred             HHHHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             22210234442000000000001124566899999999899989999999999999999999999998722029989999
Q gi|255764494|r  479 VQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQK  558 (652)
Q Consensus       479 l~Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~  558 (652)
                      |+|+|.++.||++++++|+++++||+++|++|++++++|+++|++.|+++++||++|+|||+++++|+++++++++++|+
T Consensus       479 l~VsA~d~~tg~~~~i~i~~~~~ls~~ei~~~~~ea~~~~~~D~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~ek~  558 (622)
T CHL00094        479 LSVTAKDKGTGKEQSITITGASTLSEDEVERMVKEAEKNAAEDKEKRENIDLKNQAESLCYQSEKQLKEFEDKIDEEKKQ  558 (622)
T ss_pred             CCCCEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             25503216888530379888999899999999999998899899999989988899999999999999735509999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEC
Q ss_conf             999999999998724898789999999999999999999999840344556666666555566667866654335623
Q gi|255764494|r  559 SIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIK  636 (652)
Q Consensus       559 ~i~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dad~e~v~  636 (652)
                      .++..++++++||++++.  +.++.++++|++.++++++++|+++...            ......|+++||||++++
T Consensus       559 ~i~~~l~~~~~~l~~~~~--~~~~~~~~~l~~~~~~~~~~~y~~~~~~------------~~~~~~~~~~da~~~~~~  622 (622)
T CHL00094        559 KIENLIEKLREALSKDNY--EEIKELSEELQTALMEIGKQVYSKTSTT------------GPASNLDDVIDADFSEEK  622 (622)
T ss_pred             HHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHCCCCC------------CCCCCCCCCCCCCEEECC
T ss_conf             999999999998754899--9999999999999999999998605568------------999889985265437569


No 6  
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00  E-value=0  Score=1258.79  Aligned_cols=603  Identities=55%  Similarity=0.894  Sum_probs=583.2

Q ss_pred             CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf             98169980486606999998995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS   80 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~   80 (652)
                      |++|||||||||||+||++++|.|+||+|.+|.|+|||+|+|.++++++||+.|++++.+||.|||+++|||||+.|++ 
T Consensus         1 Mg~VIGIDLGTTNS~VAv~~~G~~~VI~N~~G~rtTPSvVaf~~dge~lVG~~Ak~qa~~nP~nTi~~vKRlIGr~f~d-   79 (719)
T PRK13410          1 MGKVVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFNKDGERLVGQMARRQAVLNPQNTFYGVKRFIGRRYSE-   79 (719)
T ss_pred             CCCEEEEECCCCCEEEEEEECCEEEEEECCCCCEECCEEEEEECCCCEEECHHHHHHHHHCCHHHHHHHHHHHCCCCHH-
T ss_conf             9986999858102899999899889998899981036799997999899169999876768142199999984898033-


Q ss_pred             HHHHHHHCCCEEEEECCCCEEEEEEC--CEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             78765201986999759982799957--9587199999999999999999983884733698537788740257886344
Q gi|255764494|r   81 TVAKDASLVPFKIVEGKGGDAWIEAQ--GKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAG  158 (652)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa  158 (652)
                       ++...+.+||++..+.++.+.+.+.  ++.|+|+||+||+|++||+.|+.++|.+|++|||||||||++.||+||++||
T Consensus        80 -v~~e~k~~Py~i~~d~~g~i~v~~~~~~k~~sPeEIsA~ILkkLK~~AE~~lG~~V~~AVITVPAYFnd~QRqATkdAa  158 (719)
T PRK13410         80 -LSPESKRVPYTIRRDEVGNIKIKCPRLKREFAPEEISAMILRKLAEEASRYLGEPVTGAVITVPAYFNDSQRQATRDAG  158 (719)
T ss_pred             -CCHHHHCCCEEEEECCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             -1256633874789769994799964788147499999999999999999982999775899989999989999999999


Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             21122222222102478888603445655079987244114543101023146542013322455213447665536787
Q gi|255764494|r  159 RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT  238 (652)
Q Consensus       159 ~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~  238 (652)
                      ++|||+|+|||||||||||+||+++..+++|||||||||||||||+++.+|+|+|+++.||++|||+|||++|++||+++
T Consensus       159 ~iAGL~VlRLINEPTAAALAYGldk~~~~~VLVyDLGGGTfDVSIL~i~~GvfeVlAT~GDt~LGG~DFD~~Iv~~l~~e  238 (719)
T PRK13410        159 RIAGLEVLRILNEPTAASLAYGLDRQDNQTILVFDLGGGTFDVSILEVGDGVFEVKATSGDTQLGGNDFDKRIVDWLAEQ  238 (719)
T ss_pred             HHCCCCEEEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             98599636642608899998454347885799997798727888999609848997605888748778879999999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             64201343024478999999999988541155650358630443467887212687311000012342000011001111
Q gi|255764494|r  239 FKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKC  318 (652)
Q Consensus       239 ~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~  318 (652)
                      |++++++|++.++++++||+.+||+||+.||++.+++|+++++..+..++++++.+|||++||++|+|+++|+..+|+++
T Consensus       239 f~~k~giDl~~d~~al~RL~~aAEkAK~~LS~~~~t~I~lp~i~~~~dg~~~l~~~ITR~eFE~L~~~L~~Rt~~pv~~a  318 (719)
T PRK13410        239 FLEAEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDINLPFITATEDGPKHLETRLTRSQFEDLCGDLVSRLRRPVKRA  318 (719)
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99863766433999999999999999997075765258842332567787126999759999988999999999999999


Q ss_pred             CHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCC
Q ss_conf             01013563110146630785305677886541011111113565310111110002234675221000023566532223
Q gi|255764494|r  319 LQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIET  398 (652)
Q Consensus       319 L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~  398 (652)
                      |++|++++++|+.|+|||||||||+||++|+++||+++++++|||||||+|||+||++|++++++++|+||+|+|||||+
T Consensus       319 L~dAgl~~~dId~VILVGGSTRIP~Vq~~V~e~FGkep~~~iNPDEaVA~GAAiQA~iLsg~~~d~lllDVtPlSLGiet  398 (719)
T PRK13410        319 LKDAGLSPVQIDEVVLVGGSTRMPMVKQLVRSLIDREPNQNVNPDEVVAVGAAIQAGILAGEVKDILLLDVTPLSLGLET  398 (719)
T ss_pred             HHHHCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEE
T ss_conf             99838994141399997882554889999999849997888997177503188864310477565388973156358986


Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHH
Q ss_conf             34202466338981102456654567641222110000122222222233453102456767443532000010011001
Q gi|255764494|r  399 LGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGI  478 (652)
Q Consensus       399 ~~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGi  478 (652)
                      .||.|++||||||+||+++++.|+|+.|||+.+.|+||||||.++.+|+.||+|.|.||||+|+|.|+|+|||+||+|||
T Consensus       399 ~gg~~~~iI~RNt~IP~~~s~~FtT~~DnQt~v~I~V~qGEr~~~~dn~~Lg~F~L~gippap~G~~~IeVtF~id~nGi  478 (719)
T PRK13410        399 IGGVMKKLIPRNTTIPVRRSDIFSTSENNQTLVEIHVLQGEREMASDNKSLGRFKLTGIPPAPRGIPQVQVSFDIDANGI  478 (719)
T ss_pred             CCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEECCCCC
T ss_conf             18858887818797675057999977789715899998337853102846758886187989999973999999769987


Q ss_pred             HHHHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCH
Q ss_conf             222102344420000000000011245668999999998999899999999999999999999999987----2202998
Q gi|255764494|r  479 VQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLRE----HGDKIAE  554 (652)
Q Consensus       479 l~Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e----~~~klse  554 (652)
                      |+|+|.|+.||++++|+|+++++||++||++|+++|++++++|++.|+.+++||++|+++|++++.|.+    +++++..
T Consensus       479 l~VsA~d~~tg~~~~i~i~~~~~ls~~ei~~m~~~a~~~~~~D~~~~~~~e~~n~~~~~~~~~~~~l~e~~~~~~~~~~~  558 (719)
T PRK13410        479 LQVTALDKTTGREQSITIQGASTLSESEVNRMIQDAEKFADQDRERRERVEKRNRAQALIDQAERRLREVTLDFGMQFAR  558 (719)
T ss_pred             EEEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             89999966889811599868999899999999999998876649999889877668879999986532333443042565


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999999999987248987899999999999999999999998403445
Q gi|255764494|r  555 AEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKD  607 (652)
Q Consensus       555 ~ek~~i~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~  607 (652)
                      +++..++.++.++++||++++  ...|+.+.+.|++.+..+..+++.+-.+++
T Consensus       559 ~~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~  609 (719)
T PRK13410        559 SYRRRIESLSRELLDSLEKND--DRGLDRAQADLQDALYELNREVRLQYDDEE  609 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             678999999999999885052--889999999999999999899999877631


No 7  
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00  E-value=0  Score=1213.50  Aligned_cols=602  Identities=52%  Similarity=0.819  Sum_probs=574.6

Q ss_pred             CC--CEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf             98--1699804866069999989955997568986256279999489989966789863330835110020675498687
Q gi|255764494|r    1 MS--KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFN   78 (652)
Q Consensus         1 Ms--~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~   78 (652)
                      ||  .+||||||||||+||++++|+++||+|++|+|.|||+|+|.++ +|+||+.|++++.+||+||++++|||||++|+
T Consensus         1 ~~~~~aIGIDlGTtnS~vAv~~~g~~eii~N~~g~r~tPS~V~f~~~-~rlvG~~Ak~~~~~np~nti~~~KRliGr~~~   79 (657)
T PTZ00009          1 MTFEGAIGIDLGTTYSCVGVWQNERVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPENTVFDAKRLIGRKFD   79 (657)
T ss_pred             CCCCCEEEEECCHHCEEEEEEECCEEEEEECCCCCEEECEEEEEECC-CEEECHHHHHHHHHCCCCEEHHHHHHHCCCCC
T ss_conf             98787899985711389999969915999879999661569999189-78970999987776862350576887489887


Q ss_pred             CHHHHHHHHCCCEEEEECCCCEEEEEE----CCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHH
Q ss_conf             267876520198699975998279995----7958719999999999999999998388473369853778874025788
Q gi|255764494|r   79 DSTVAKDASLVPFKIVEGKGGDAWIEA----QGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQAT  154 (652)
Q Consensus        79 d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~  154 (652)
                      |+.++.+.++|||+++...++.+.+.+    ..+.|+|+||+||+|++||+.|+.++|.++++||||||+||++.||+|+
T Consensus        80 d~~vq~~~~~~p~~v~~~~~~~~~i~v~~~~~~~~~tpeeisA~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~d~QR~At  159 (657)
T PTZ00009         80 DSVVQSDMKHWPFKVTTGGDDKPVIEVQYRGEKKTFHPEEISSMVLLKMKEIAEAYLGKQVKKAVVTVPAYFNDSQRQAT  159 (657)
T ss_pred             CHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH
T ss_conf             47788776339848997699972699996587548849999999999999999997199987099997999998999999


Q ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC--CCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf             6344211222222221024788886034456--55079987244114543101023146542013322455213447665
Q gi|255764494|r  155 KDAGRIAGLDVLRIINEPTAAALAYGLDKKD--ARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLV  232 (652)
Q Consensus       155 ~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~--~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~  232 (652)
                      ++||++|||+|+|||||||||||+||+++..  +++|||||||||||||||+++.+|+|+|+++.||++|||+|||++|+
T Consensus       160 ~~Aa~iAGL~vlrlInEPTAAAlaYgl~k~~~~~~~vlV~DlGgGTfDVSvl~~~~g~~~Vlat~gD~~LGG~dfD~~L~  239 (657)
T PTZ00009        160 KDAGTIAGLNVMRIINEPTAAAIAYGLDKKGDGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLV  239 (657)
T ss_pred             HHHHHHCCCCEEEEECCHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEECCCCCCCCHHHHHHHHH
T ss_conf             99999749955788642789999850234678861899998788649977689868838998504778868067799999


Q ss_pred             HHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHH
Q ss_conf             536787642013-4302447899999999998854115565035863044346788721268731100001234200001
Q gi|255764494|r  233 EHICDTFKKENG-IDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKT  311 (652)
Q Consensus       233 ~~~~~~~~~~~~-~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~  311 (652)
                      +||+++|+++++ +|++.++++++||+.+||++|+.||++++++++++++++    +.|++.+|||++||++|+|+++|+
T Consensus       240 ~~~~~~fk~k~~g~d~~~~~ra~~rL~~aaEkaK~~LS~~~~a~i~ie~l~~----~~d~~~~itR~~FE~l~~~l~~r~  315 (657)
T PTZ00009        240 EFCVEDFKRKNKGKDLSSNHRALRRLRTACERAKRTLSSSTQATIEIDSLFE----GIDYQATISRARFEELCGDLFRST  315 (657)
T ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC----CCCCEEEEHHHHHHHHHHHHHHHH
T ss_conf             9999999875168786649999999999999999971458743788214323----446335671999999999999989


Q ss_pred             HHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHCCCCCCC----CCCCHHE
Q ss_conf             10011110101356311014663078530567788654101-111111356531011111000223467----5221000
Q gi|255764494|r  312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFF-NKSPSKGVNPDEVVAMGAAIQAGVLQG----DVKDLLL  386 (652)
Q Consensus       312 ~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~f-g~~~~~~~npdeaVa~GAA~~a~~ls~----~~~~~~~  386 (652)
                      ..+|+++|++|++++++|+.|+|||||||||+||+.|+++| |+++++++|||||||+|||+||++|++    +++++++
T Consensus       316 ~~~i~~aL~~a~l~~~dId~ViLVGGsTRiP~Vq~~l~~~f~gk~~~~~iNpDEaVA~GAAiqaa~Lsg~~~~~v~~~~l  395 (657)
T PTZ00009        316 LQPVEKVLQDAKMDKRSVHDVVLVGGSTRIPKVQSLISDFFNGKELNKSINPDEAVAYGAAVQAAILTGGQSKQTQGLLL  395 (657)
T ss_pred             HHHHHHHHHHHCCCHHHEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf             99999999973799525149998088146768999999981898888897831466654899999871896554123689


Q ss_pred             ECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             02356653222334202466338981102456654567641222110000122222222233453102456767443532
Q gi|255764494|r  387 LDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQ  466 (652)
Q Consensus       387 ~dv~p~slgie~~~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~  466 (652)
                      .||+|+|||||+.||.|.+|||||++||++++++|+|+.|||+.+.|+||||||.++++|++||+|+|.||||+|+|.|+
T Consensus       396 ~Dv~PlslGie~~gg~~~~ii~rnt~iP~~k~~~ftt~~d~q~~v~i~v~qGe~~~~~dn~~lg~f~l~gipp~p~g~~~  475 (657)
T PTZ00009        396 LDVAPLSLGLETAGGVMTALIKRNTTIPTKKSQIFTTYADNQPGVHIQVFEGERAMTKDNHLLGKFHLSGIPPAPRGVPQ  475 (657)
T ss_pred             EECCCEEEEEEECCCCEEEEEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCEECEEECCCCCCCCCCCCC
T ss_conf             96164047888659822453117852685540898715779861599953577665877866441554789978899980


Q ss_pred             CCHHHHCCCCHHHHHHCCCCCCCCHHCHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00001001100122210234442000000000001-12456689999999989998999999999999999999999999
Q gi|255764494|r  467 IEVAFDIDANGIVQVSALDKGTGKAQQISIQASGG-LSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSL  545 (652)
Q Consensus       467 I~vtf~id~nGil~Vsa~~~~t~~~~~i~i~~~~~-Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l  545 (652)
                      |+|+|++|.||||+|+|.++.||++++++|+++.+ ||+++|++|++++++|+++|++.|+++++||+||+|||++|++|
T Consensus       476 I~V~f~id~nGil~Vsa~dk~tgk~~~i~i~~~~g~Ls~~ei~~~~~~~~~~~~~Dk~~~e~~eakN~lE~yiy~~r~kl  555 (657)
T PTZ00009        476 IEVTFDIDANGILNVSAEEKSTGKRNHITITNDKGRLSKDEIERMVNDAEKYKAEDEAQRERVEAKNGLENYAYSMKNTL  555 (657)
T ss_pred             EEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             69998606888456566506878776358836999899999999999999899878999999998878999999998663


Q ss_pred             HH--HHHCCCHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             87--22029989999999999999998724-8987899999999999999999999998403445
Q gi|255764494|r  546 RE--HGDKIAEAEQKSIRESIDALRTLLND-ADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKD  607 (652)
Q Consensus       546 ~e--~~~klse~ek~~i~~~l~e~e~wl~~-~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~  607 (652)
                      ++  +.+++++++++.|..+++++++||++ .++..+.|+.++++|+.+.+||..++|++.+.+.
T Consensus       556 ~d~~~~~~~~~~ek~~i~~~l~e~~~WL~~g~da~k~~y~~kl~eL~~~~~Pi~~~~y~~~~~~~  620 (657)
T PTZ00009        556 SDPNVKGKLDDAEKDTANKAIDEALEWLESNQEASKEEYEHKQKELESVCNPIMTKMYQSMGGAA  620 (657)
T ss_pred             CCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             56001101899999999999999999975599755899999999999877499999864246888


No 8  
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00  E-value=0  Score=1218.49  Aligned_cols=591  Identities=41%  Similarity=0.688  Sum_probs=568.2

Q ss_pred             EEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHH
Q ss_conf             69980486606999998995599756898625627999948998996678986333083511002067549868726787
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTVA   83 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~   83 (652)
                      +||||||||||+||++++|.|+||+|.+|+|+|||+|+|.++++++||+.|++++..||.|||+++||||||+|+|  ++
T Consensus        21 aIGIDLGTTnS~VA~~~~g~~~iI~n~~G~r~tPSvV~f~~~g~~lVG~~Ak~~~~~nP~nTi~~~KRlmGr~~~d--v~   98 (621)
T PRK05183         21 AVGIDLGTTNSLVAAVRSGVAETLPDEQGRVLLPSVVRYLEDGGVEVGYEARAAAAQDPKNTIVSVKRFMGRSLAD--IQ   98 (621)
T ss_pred             EEEEECCHHHEEEEEEECCEEEEEECCCCCEEECEEEEEECCCCEEECHHHHHHHHHCCHHEEHHHHHHCCCCCHH--HH
T ss_conf             8999978234799999999889958799796704799997899889549999866758310517869762998077--77


Q ss_pred             HHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             65201986999759982799957958719999999999999999998388473369853778874025788634421122
Q gi|255764494|r   84 KDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGL  163 (652)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl  163 (652)
                      ...+++||+++..+++.+.+...++.++|+||+|++|++||+.||.++|.+|++|||||||||++.||+||++||++|||
T Consensus        99 ~~~~~~py~i~~~~~g~~~i~~~~~~~sP~EISA~IL~kLK~~AE~~lg~~V~~AVITVPAyFnd~QRqATkdAa~iAGL  178 (621)
T PRK05183         99 QRYPHLPYQFVASENGMPMIETAQGVKSPVEVSAEILKALRARAEDTLGGELVGAVITVPAYFDDAQRQATKDAARLAGL  178 (621)
T ss_pred             HHHHCCCEEEEECCCCCEEEEECCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf             66315975899779995799957872879999999999999999997299857689998999999999999999997498


Q ss_pred             CCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             22222210247888860344565507998724411454310102314654201332245521344766553678764201
Q gi|255764494|r  164 DVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKEN  243 (652)
Q Consensus       164 ~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~  243 (652)
                      +|+|||||||||||+||+++..++++||||||||||||||+++.+|+|+|+++.||++|||+|||++|++||++++    
T Consensus       179 ~VlRlINEPTAAAlAYGld~~~e~~vlVyDLGGGTfDVSIl~~~~gvfeVlAt~GD~~LGG~DfD~~i~~~l~~~~----  254 (621)
T PRK05183        179 NVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWLLEQA----  254 (621)
T ss_pred             CEEEEECHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH----
T ss_conf             4587416289999980266688757999987886589999997488789997059887580889999999999874----


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCC
Q ss_conf             34302447899999999998854115565035863044346788721268731100001234200001100111101013
Q gi|255764494|r  244 GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAG  323 (652)
Q Consensus       244 ~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~  323 (652)
                      +.+.+.+++++++|+.+||++|+.||.+.++.|+++.      .+.++..+|||++||++|+|+++|+..+|+++|++|+
T Consensus       255 ~~~~~~d~~~~~~L~~~aE~aK~~LS~~~~~~i~~~~------~~~~~~~~ltR~~FE~l~~~L~~rt~~~v~~aL~dA~  328 (621)
T PRK05183        255 GLAPRLDPEDQRLLLDAARAAKEALSDADSVEVSVAL------WQGELKLTITREQFEALIAPLVKRTLLACRRALRDAG  328 (621)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC------CCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             3365799999999999999999963678638999605------8953799974999999999999999999999998713


Q ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC--CCHHEECCCCCCCCCCCCCC
Q ss_conf             5631101466307853056778865410111111135653101111100022346752--21000023566532223342
Q gi|255764494|r  324 LSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDV--KDLLLLDVTPLSLGIETLGG  401 (652)
Q Consensus       324 ~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~--~~~~~~dv~p~slgie~~~~  401 (652)
                      +++++||.|+|||||||||.||+.|+++||+++..++|||||||+|||+||++|+++.  .+++++||+|+|||||+.||
T Consensus       329 l~~~dId~ViLVGGSTRiP~Vq~~v~~~Fgk~~~~~inPDeaVA~GAAiQa~iL~g~~~~~~~lllDV~PlSLGIEt~gG  408 (621)
T PRK05183        329 VEADEVLEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVALGAAIQADILAGNKPDSDMLLLDVIPLSLGLETMGG  408 (621)
T ss_pred             CCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEECCC
T ss_conf             68300209999288545668999999985989666899016888769999998628976670699961254135686297


Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHH
Q ss_conf             02466338981102456654567641222110000122222222233453102456767443532000010011001222
Q gi|255764494|r  402 VFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQV  481 (652)
Q Consensus       402 ~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGil~V  481 (652)
                      .|++||||||+||++++++|+|+.|||+.+.|+||||||.+++||+.||+|.|.||||+|+|.|+|+|||++|+||||+|
T Consensus       409 ~~~~iI~RNt~IP~~~~~~FtT~~DnQt~v~I~V~qGEr~~~~dN~~Lg~f~L~gIppap~G~~~I~VtF~iD~nGiL~V  488 (621)
T PRK05183        409 LVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVSDCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSV  488 (621)
T ss_pred             EEEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEECCHHHHCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEE
T ss_conf             69998727983575103799956889607999999735544524727717997798999899986899999879967999


Q ss_pred             HCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             10234442000000000001124566899999999899989999999999999999999999998722029989999999
Q gi|255764494|r  482 SALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIR  561 (652)
Q Consensus       482 sa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~~i~  561 (652)
                      +|.|+.||++++|+|+++++||++||++|++++++++++|+..|+++|+||++|+++|.+++.|.+++++++++++..++
T Consensus       489 sA~d~~tg~~~~i~i~~~~gLs~~ei~~m~~~a~~~~~~D~~~r~~~e~~~~a~~~~~~~~~~l~~~~~~l~~~~~~~i~  568 (621)
T PRK05183        489 TAMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSNAEEDMKARALAEQQVEAERVLEALQAALAADGDLLSADERAAID  568 (621)
T ss_pred             EEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             99985679713599847999799999999999998799889869989989889999999999999554409999999999


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999999872489878999999999999999999999984034455
Q gi|255764494|r  562 ESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDA  608 (652)
Q Consensus       562 ~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~~  608 (652)
                      ..+.++++++.++  |...|+.+++.|+++.+++..++|.+......
T Consensus       569 ~~~~~l~~~~~~~--d~~~i~~~~~~l~~~~~~~a~~~m~~~~~~al  613 (621)
T PRK05183        569 AAMAALRALAQGD--DADAIEAAIKALDKATQEFAARRMDRSIRRAL  613 (621)
T ss_pred             HHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999987269--99999999999999999999999999999984


No 9  
>KOG0100 consensus
Probab=100.00  E-value=0  Score=1188.35  Aligned_cols=599  Identities=55%  Similarity=0.871  Sum_probs=574.2

Q ss_pred             CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf             98169980486606999998995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS   80 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~   80 (652)
                      |.+|||||||||||||+++++|+++||.|.+|+|.|||+|+|+++ +|++|+.|++|+..||.|||++.||||||.|+|+
T Consensus        35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~  113 (663)
T KOG0100          35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK  113 (663)
T ss_pred             CCEEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCCEEEECCC-HHHHHHHHHCCCCCCCCCCEECHHHHHCCCCCCH
T ss_conf             443899832784356799837758998647788256543543561-2435267645154686344122677737545774


Q ss_pred             HHHHHHHCCCEEEEECCCCE-EEEEEC---CEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHH
Q ss_conf             78765201986999759982-799957---95871999999999999999999838847336985377887402578863
Q gi|255764494|r   81 TVAKDASLVPFKIVEGKGGD-AWIEAQ---GKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKD  156 (652)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~  156 (652)
                      .+|++.++|||++++..+.. +.+.++   .+.|+|||++||+|.++|++||.|||.+|+++|+||||||+++||||+++
T Consensus       114 ~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKD  193 (663)
T KOG0100         114 SVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD  193 (663)
T ss_pred             HHHHHHHCCCEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHCCHHHHHHHCC
T ss_conf             36544201764787479981079971688532128899799999988989999838722204896210015687764224


Q ss_pred             HHHHCCCCCCCCCCCHHHHHHHHHCCCCC-CCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf             44211222222221024788886034456-55079987244114543101023146542013322455213447665536
Q gi|255764494|r  157 AGRIAGLDVLRIINEPTAAALAYGLDKKD-ARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHI  235 (652)
Q Consensus       157 Aa~~AGl~v~~li~EptAAal~Y~~~~~~-~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~  235 (652)
                      |+.||||+|+|+||||||||++||+++++ ++++||||+||||||||++.+.+|+|+|++|.||+||||.|||+++++||
T Consensus       194 AGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~f  273 (663)
T KOG0100         194 AGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYF  273 (663)
T ss_pred             CCEECCCEEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf             55002634788606842878872446567841079997589657779999707458999637875447540678999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCC
Q ss_conf             78764201343024478999999999988541155650358630443467887212687311000012342000011001
Q gi|255764494|r  236 CDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPC  315 (652)
Q Consensus       236 ~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i  315 (652)
                      ++.|+++++.|++.|.+|+++|+++||+||..||++.++.|+|+|+.    +|.||+.++||..||++..++|.+++.|+
T Consensus       274 iklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~f----dG~DfSEtLtRAkFEElNmDLFr~TlkPv  349 (663)
T KOG0100         274 IKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLF----DGVDFSETLTRAKFEELNMDLFRKTLKPV  349 (663)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99986650776412368999999999998765312430377642003----66433305566678875069888756789


Q ss_pred             CCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHCCCCCCC--CCCCHHEECCCCC
Q ss_conf             1110101356311014663078530567788654101-111111356531011111000223467--5221000023566
Q gi|255764494|r  316 KKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFF-NKSPSKGVNPDEVVAMGAAIQAGVLQG--DVKDLLLLDVTPL  392 (652)
Q Consensus       316 ~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~f-g~~~~~~~npdeaVa~GAA~~a~~ls~--~~~~~~~~dv~p~  392 (652)
                      .++|++++++++|||.++|||||+|||+||++++++| |+++++.+|||||||+|||+||++|||  +..+++++||+|+
T Consensus       350 ~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~pL  429 (663)
T KOG0100         350 QKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNPL  429 (663)
T ss_pred             HHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
T ss_conf             99876128661457538995486568269999999828888667988678777656665320125667685799960451


Q ss_pred             CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             53222334202466338981102456654567641222110000122222222233453102456767443532000010
Q gi|255764494|r  393 SLGIETLGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFD  472 (652)
Q Consensus       393 slgie~~~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~  472 (652)
                      +||||+.||+|+++|||||.||++|++.|+|+.|||+.+.|+||+|||++.+||+.||.|+|+||||+|+|.|+|+|||+
T Consensus       430 tlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFe  509 (663)
T KOG0100         430 TLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFE  509 (663)
T ss_pred             CCEEEEECCEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             10036414344202467762675302011210048741799985065664444311033323679988889862799999


Q ss_pred             CCCCHHHHHHCCCCCCCCHHCHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q ss_conf             01100122210234442000000000-0011245668999999998999899999999999999999999999987---2
Q gi|255764494|r  473 IDANGIVQVSALDKGTGKAQQISIQA-SGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLRE---H  548 (652)
Q Consensus       473 id~nGil~Vsa~~~~t~~~~~i~i~~-~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e---~  548 (652)
                      +|+||||+|+|.|++||+.++|+|++ .++||.++|++|+++|++++++|+..++++++||+||+|.|.++.++.+   .
T Consensus       510 vDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekL  589 (663)
T KOG0100         510 VDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKL  589 (663)
T ss_pred             ECCCCEEEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             72674589876606778744178866778779899999999899876666889988776778999998765103766675


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             20299899999999999999987248-987899999999999999999999998403
Q gi|255764494|r  549 GDKIAEAEQKSIRESIDALRTLLNDA-DPDESKIKEATQKLMEVSMNLGKAIYEAQA  604 (652)
Q Consensus       549 ~~klse~ek~~i~~~l~e~e~wl~~~-~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~  604 (652)
                      +.|+++++|+.++.++++.-+||+++ +++..+++++.++|+.+++|+..++|....
T Consensus       590 g~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag  646 (663)
T KOG0100         590 GGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAG  646 (663)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             565886678999999999999876166656778999998899998899999851147


No 10 
>pfam00012 HSP70 Hsp70 protein. Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region.
Probab=100.00  E-value=0  Score=1114.59  Aligned_cols=590  Identities=64%  Similarity=0.973  Sum_probs=564.5

Q ss_pred             EEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHH
Q ss_conf             69980486606999998995599756898625627999948998996678986333083511002067549868726787
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTVA   83 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~   83 (652)
                      |||||||||||+||++++|.|+||+|+.|+|.|||+|+|.++ +|+||+.|+.++.+||.+|++++|||||+.|+|+.++
T Consensus         1 ViGIDlGTtns~vAv~~~g~~~iv~n~~~~r~tPS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~v~   79 (598)
T pfam00012         1 VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPK-ERLVGQAAKRQAVTNPKNTVFSVKRLIGRKFSDPVVQ   79 (598)
T ss_pred             CEEEECCHHCEEEEEEECCEEEEEECCCCCEECCEEEEEECC-CEEECHHHHHHHHHCCCCEEHHHHHHCCCCCCCHHHH
T ss_conf             989984601489999989987999879998321779999699-8897099997567684457715288609988757788


Q ss_pred             HHHHCCCEEEEECCCCEEEEEE--CCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             6520198699975998279995--79587199999999999999999983884733698537788740257886344211
Q gi|255764494|r   84 KDASLVPFKIVEGKGGDAWIEA--QGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIA  161 (652)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~A  161 (652)
                      .+.+++||+++.++++.+.+.+  .++.|+|+||+||+|++||+.|+.++|.++.+||||||+||++.||+|+++||++|
T Consensus        80 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~speei~a~iL~~lk~~ae~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~A  159 (598)
T pfam00012        80 RDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQKLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGRIA  159 (598)
T ss_pred             HHHHCCCEEEEECCCCCEEEEEECCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf             76423983799879996689993399799699999999999999999983898653999989978989999999999976


Q ss_pred             CCCCCCCCCCHHHHHHHHHCCCC-CCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             22222222102478888603445-65507998724411454310102314654201332245521344766553678764
Q gi|255764494|r  162 GLDVLRIINEPTAAALAYGLDKK-DARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK  240 (652)
Q Consensus       162 Gl~v~~li~EptAAal~Y~~~~~-~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~  240 (652)
                      ||+|++|||||||||++||+++. .++++||||||||||||||+++.+|.++|+++.||.+|||+|||.+|++||+++|+
T Consensus       160 Gl~vl~linEptAAAlaYg~~~~~~~~~vlV~DlGggt~dvSv~~~~~g~~~Vla~~gd~~LGG~dfD~~l~~~l~~~f~  239 (598)
T pfam00012       160 GLNVLRIINEPTAAALAYGLDKKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEFK  239 (598)
T ss_pred             CCCEEEEECCHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99646653658899999714357896089999889981777777612998999983278875867888999999999874


Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf             20134302447899999999998854115565-03586304434678872126873110000123420000110011110
Q gi|255764494|r  241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTS-QTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCL  319 (652)
Q Consensus       241 ~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~-~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L  319 (652)
                      ++|++|++.+++++.||+.+||++|+.||++. ++.+.+++++.+   |.|++.+|||++||++|+|+++|+..+|+++|
T Consensus       240 ~k~~~d~~~~~~a~~~L~~~aekaK~~LS~~~t~~~~~~~~~~~~---~~d~~~~itR~eFE~l~~~l~~r~~~~i~~~L  316 (598)
T pfam00012       240 KKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMAD---GKDVSGTLTRAKFEELCADLFERTLEPVEKAL  316 (598)
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC---CCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             641677332999999999999999997266663366788871478---94799997799999999999999999998789


Q ss_pred             HHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC--CCCCHHEECCCCCCCCCC
Q ss_conf             101356311014663078530567788654101111111356531011111000223467--522100002356653222
Q gi|255764494|r  320 QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG--DVKDLLLLDVTPLSLGIE  397 (652)
Q Consensus       320 ~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~--~~~~~~~~dv~p~slgie  397 (652)
                      +++++++++|+.|+|||||||||+||+.|+++||+++.+++|||||||+|||+||++|++  +++++.+.|++|++|||+
T Consensus       317 ~~a~l~~~dId~ViLvGGssRiP~Vq~~l~~~fg~~~~~~inpdeaVa~GAA~~aa~ls~~~~v~~~~~~Dv~p~slgi~  396 (598)
T pfam00012       317 KDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKTVNPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIE  396 (598)
T ss_pred             HHHCCCHHHEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEE
T ss_conf             87289954512578618865676899999998689966686853142330899998757876456528998547358999


Q ss_pred             CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCH
Q ss_conf             33420246633898110245665456764122211000012222222223345310245676744353200001001100
Q gi|255764494|r  398 TLGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANG  477 (652)
Q Consensus       398 ~~~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nG  477 (652)
                      +.+|.+.+||+||+++|+++++.|+|..|+|+.+.|+|||||+....+|..||+|+|.||||+|+|.|+|+|+|++|.||
T Consensus       397 ~~~~~~~~ii~rnt~iP~~~~~~f~t~~d~q~~~~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~G  476 (598)
T pfam00012       397 TLGGVMTKLIPRNTTIPTKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANG  476 (598)
T ss_pred             ECCCCCCCCCCCCCEECCCCCCCCEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCC
T ss_conf             81880100167785426777755012267984489999955865456787787999947885889986599999985988


Q ss_pred             HHHHHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             12221023444200000000000112456689999999989998999999999999999999999999872202998999
Q gi|255764494|r  478 IVQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQ  557 (652)
Q Consensus       478 il~Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek  557 (652)
                      +|+|++.++.|++++++++++..+++++++++|+++++++.++|+..+++.++||+||++||.+|+.|++..++++++++
T Consensus       477 il~v~a~~~~t~~~~~i~~~~~~~l~~~e~~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~~~  556 (598)
T pfam00012       477 ILTVSAKDKGTGKEQKITITNSSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADK  556 (598)
T ss_pred             CEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             57999842678954568957999989999999999999889999999999999999999999999998753524799999


Q ss_pred             HHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999987248--987899999999999999999999998
Q gi|255764494|r  558 KSIRESIDALRTLLNDA--DPDESKIKEATQKLMEVSMNLGKAIYE  601 (652)
Q Consensus       558 ~~i~~~l~e~e~wl~~~--~~d~~~i~~~~~~L~e~~~~i~~~~~~  601 (652)
                      ++    ++++++|||++  +.+..++++++++|+++..|+.+|+|+
T Consensus       557 ~~----i~~~~~Wl~~~~~~~~~~~~~~kl~eL~~~~~pi~~R~~~  598 (598)
T pfam00012       557 KK----VEEAIEWLKEELEGEDKEEIEAKTEELQKVVQPIGERMYQ  598 (598)
T ss_pred             HH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99----9999999986036899999999999999999999998629


No 11 
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00  E-value=0  Score=1117.40  Aligned_cols=566  Identities=35%  Similarity=0.561  Sum_probs=530.5

Q ss_pred             CEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHH
Q ss_conf             16998048660699999899559975689862562799994899899667898633308351100206754986872678
Q gi|255764494|r    3 KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTV   82 (652)
Q Consensus         3 ~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~   82 (652)
                      -+||||||||||+||++++|+|+||+|++|+|+|||+|+|.++ .+++|.          .+|++++|||||+.|+++..
T Consensus        20 ~aIGIDLGTTnS~VAv~~~g~~~II~N~~G~r~TPSvVaf~~~-~~~VG~----------~~ti~~vKRliGr~~~d~~~   88 (595)
T PRK01433         20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTNE-NFTIGN----------NKGLRSIKRLFGKTLKEILN   88 (595)
T ss_pred             EEEEEECCHHHEEEEEEECCEEEEEECCCCCCEECEEEEEECC-CEEECC----------CCEEEEEHHHCCCCHHHHCC
T ss_conf             8999956801017899989989999769979500459999189-649886----------54044108663987566245


Q ss_pred             HHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf             76520198699975998279995795871999999999999999999838847336985377887402578863442112
Q gi|255764494|r   83 AKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAG  162 (652)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AG  162 (652)
                      +......++.+...+++.+.+...++.|+|+||+||+|++||+.||.++|.+|++|||||||||++.||+||++||++||
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~sPeEIsA~IL~kLK~~AE~~lg~~V~~AVITVPAYFnd~QRqATk~Aa~iAG  168 (595)
T PRK01433         89 TPALFSLVKDYLDVNSSELKLNFANKQIRIPEIAAEVFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAG  168 (595)
T ss_pred             CCCCCCCCCEEEECCCCEEEEECCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             50230115443405895589972885996999899999999999999858987459999687578899999999999849


Q ss_pred             CCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             22222221024788886034456550799872441145431010231465420133224552134476655367876420
Q gi|255764494|r  163 LDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKE  242 (652)
Q Consensus       163 l~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~  242 (652)
                      |+|+|||||||||||+||+++...+++||||||||||||||+++.+|+|+|+++.||++|||+|||++|++|++++|...
T Consensus       169 L~VlRlInEPTAAAlAYGl~k~~~~~ilVyDLGGGTfDVSil~~~~g~feVlat~GD~~LGG~DfD~~i~~~l~~~f~~~  248 (595)
T PRK01433        169 FEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDLP  248 (595)
T ss_pred             CCEEEECCHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             91587336889999981876688865999988897189999995188089997037887675568999999999872877


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHC
Q ss_conf             13430244789999999999885411556503586304434678872126873110000123420000110011110101
Q gi|255764494|r  243 NGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDA  322 (652)
Q Consensus       243 ~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a  322 (652)
                      ++.+          .++.|+++|+.||.+....              ...++|||++||++|.|+++|++.+|+++|++|
T Consensus       249 ~~~~----------~~~~ae~aK~~Ls~~~~~~--------------~~~~~ltR~~Fe~l~~~L~~r~~~~v~~~L~~a  304 (595)
T PRK01433        249 NSID----------TLQLAKKAKETLTYKDSFN--------------NDNISINKQTLEQLILPLVERTINIAQECLEQA  304 (595)
T ss_pred             CCHH----------HHHHHHHHHHHHCCCCCCC--------------CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             7788----------9999999999823354345--------------774187699999999999999999999999976


Q ss_pred             CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCCCCCE
Q ss_conf             35631101466307853056778865410111111135653101111100022346752210000235665322233420
Q gi|255764494|r  323 GLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGV  402 (652)
Q Consensus       323 ~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~~~~~  402 (652)
                      +  +.+||.|+|||||||||.||+.|+++||+++.+++|||||||+|||+||++|++..++++++||+|+|||||+.||.
T Consensus       305 ~--~~dId~ViLVGGsTRiP~Vq~~l~~~Fg~~~~~~inPDEaVA~GAAiqa~~L~~~~~~~~llDV~PlSLGiEt~gg~  382 (595)
T PRK01433        305 G--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMELYGGI  382 (595)
T ss_pred             C--CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCE
T ss_conf             9--35355489967855458999999998589977897847899998999877643776653999951763689974981


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHH
Q ss_conf             24663389811024566545676412221100001222222222334531024567674435320000100110012221
Q gi|255764494|r  403 FTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQVS  482 (652)
Q Consensus       403 ~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGil~Vs  482 (652)
                      |++||||||+||+++++.|+|+.|||+.+.|+||||||.++++|+.||+|.|.||||+|+|.|+|+|||.+|+||||+|+
T Consensus       383 ~~~iI~RNt~iP~~~~~~FtT~~D~Qt~v~I~V~qGEr~~~~dN~~Lg~f~L~gipp~p~G~~~I~VtF~iD~nGil~Vs  462 (595)
T PRK01433        383 VEKIIMRNTPIPIAVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVS  462 (595)
T ss_pred             EEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCHHHHCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEE
T ss_conf             67762289815752323899746798068999996351223137165259987989876899858999998489719999


Q ss_pred             CCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             02344420000000000011245668999999998999899999999999999999999999987220299899999999
Q gi|255764494|r  483 ALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRE  562 (652)
Q Consensus       483 a~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~~i~~  562 (652)
                      |.|+.||++++|+|+++++||++||++|++++++++++|+..|+..|+||++|+++|.+++.|.+++++++++++..++.
T Consensus       463 A~d~~tg~~~~i~i~~~~gls~~ei~~m~~~a~~~~~~d~~~r~~~e~~~~~e~~~~~~~~~l~~~~~~l~~~~~~~i~~  542 (595)
T PRK01433        463 AYEKISNTSHFIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAIIEAEALIFNIERAIAELTTLLSESEISIINS  542 (595)
T ss_pred             EEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99857897788998279997999999999999998999999999999999999999999999997455099999999999


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999987248987899999999999999999999998403445
Q gi|255764494|r  563 SIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKD  607 (652)
Q Consensus       563 ~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~  607 (652)
                      .++++++|+..+  |...++..+++|.+..+++.++++...-...
T Consensus       543 ~~~~l~~~~~~~--d~~~i~~~~~~l~~~~~~~~~~~m~~~i~~~  585 (595)
T PRK01433        543 LLDNIKEAIKAR--DRILINNSIKEFKSKIKKSMDTKLNIIINDL  585 (595)
T ss_pred             HHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf             999999998667--8999999999999988999998768999999


No 12 
>TIGR01991 HscA Fe-S protein assembly chaperone HscA; InterPro: IPR010236   Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems.   The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly .   The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets.   In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen .   This entry represents the HscA chaperone protein from the SUF system. HscA (or Hsc66) is a specialised bacterial Hsp70-class molecular chaperone that participates in the assembly of iron-sulphur cluster proteins. HscA resembles DnaK, but belongs to a separate clade. HscA interacts with IscU, which is believed to serve as a template for Fe-S cluster formation. The HscA-IscU interaction is facilitated by the J-type co-chaperone protein HscB (or Hsc20), which binds to both HscA and IscU, bringing them into contact with each other. HscA recognises a conserved LPPVK sequence motif at positions 99-103 of IscU .; GO: 0005524 ATP binding, 0016887 ATPase activity, 0051082 unfolded protein binding, 0016226 iron-sulfur cluster assembly.
Probab=100.00  E-value=0  Score=1105.22  Aligned_cols=596  Identities=41%  Similarity=0.683  Sum_probs=567.2

Q ss_pred             CCCEEEEECCCCEEEEEEEEC-CEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf             981699804866069999989-9559975689862562799994899899667898633308351100206754986872
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDG-KNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFND   79 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~-~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d   79 (652)
                      |--++|||||||||.||.++. |.++.+|+.+|...+||+|.|..+|-..||..|+..+..+|.|||.+.||||||.+.|
T Consensus        22 ~rla~GIDLGTTnSLVA~vrseg~a~~lpd~eGr~~lPSvV~Y~~~gG~~VG~~Ar~~a~~dp~nTv~S~KRlmGR~L~D  101 (628)
T TIGR01991        22 MRLAVGIDLGTTNSLVAAVRSEGKAECLPDAEGRLLLPSVVRYLADGGVEVGKAAREAAASDPLNTVISVKRLMGRGLED  101 (628)
T ss_pred             CCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCEECCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH
T ss_conf             53776211453210102330475988776768676546225761468802668999997527700345626651576576


Q ss_pred             HHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             67876520198699975998279995795871999999999999999999838847336985377887402578863442
Q gi|255764494|r   80 STVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGR  159 (652)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~  159 (652)
                        ++...+++||++..++++.+.+...-...+|.||+|.||++||..||..||....++||||||||+|+|||||+|||+
T Consensus       102 --v~q~~~~lPYrf~~~e~g~~~~~T~~G~~~PVeVSA~IL~~L~~rAe~~LgG~L~G~VITVPAYFDDAQRQaTKDAaR  179 (628)
T TIGR01991       102 --VQQEGKRLPYRFEAGESGMVEIETAQGLKSPVEVSAEILKELKARAEEALGGELVGVVITVPAYFDDAQRQATKDAAR  179 (628)
T ss_pred             --HCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             --525657787000158898547733567526313437899999998866305540116897067554022120157887


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             11222222221024788886034456550799872441145431010231465420133224552134476655367876
Q gi|255764494|r  160 IAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTF  239 (652)
Q Consensus       160 ~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~  239 (652)
                      +|||+|+||+|||||||++||+++..++.+.|||+|||||||||+++++|+|+|++|+||+-|||+|||++|++|+.++ 
T Consensus       180 LAGL~VLRLlNEPTAAA~AYGLd~g~EG~~avYDLGGGTFDiSiL~L~kGvFeV~aTGGdsALGGDDFDH~l~~~~~eq-  258 (628)
T TIGR01991       180 LAGLNVLRLLNEPTAAAIAYGLDKGKEGLVAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHALADLLLEQ-  258 (628)
T ss_pred             HHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH-
T ss_conf             6235777641614799998311278876499983788710355643403203653047785667763778999999986-


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf             42013430244789999999999885411556503586304434678872126873110000123420000110011110
Q gi|255764494|r  240 KKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCL  319 (652)
Q Consensus       240 ~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L  319 (652)
                         .|+.-..|.+..+.|+..+.-||+.||...++.|.+-     ..+|.-+..+|+|++|++++++|+.|+..+|.+||
T Consensus       259 ---~G~~~~~~~~~q~~lL~~a~aAKe~Ltd~~~v~v~~~-----~~~g~aidt~lSra~f~~li~~LV~rtl~~crrAl  330 (628)
T TIGR01991       259 ---AGLSQDLDEEQQRQLLSLARAAKEALTDAESVRVAVG-----DWDGEAIDTELSRAEFEELIEPLVKRTLLPCRRAL  330 (628)
T ss_pred             ---CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---5897677836789999999999864486334688885-----15770201565289998899999985216788888


Q ss_pred             HHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC--CCHHEECCCCCCCCCC
Q ss_conf             10135631101466307853056778865410111111135653101111100022346752--2100002356653222
Q gi|255764494|r  320 QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDV--KDLLLLDVTPLSLGIE  397 (652)
Q Consensus       320 ~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~--~~~~~~dv~p~slgie  397 (652)
                      +|||+.+++|..|+|||||||+|.||+.+.++||++|..++|||++||+||||||.+|.|+.  .+++|.||+|+|||+|
T Consensus       331 kDaGV~~~e~~~VvmVGGSTRvp~Vr~~VaelFg~~PL~~ldPD~VVAlGAAiQAd~LaGNk~~~elLLLDV~PLSLGlE  410 (628)
T TIGR01991       331 KDAGVEKEEVKGVVMVGGSTRVPKVREAVAELFGREPLTDLDPDKVVALGAAIQADVLAGNKRDEELLLLDVIPLSLGLE  410 (628)
T ss_pred             HHCCCCHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCHHCCHH
T ss_conf             75278832532657862654616799999886377878888751424655899875532688886400110121110023


Q ss_pred             CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCH
Q ss_conf             33420246633898110245665456764122211000012222222223345310245676744353200001001100
Q gi|255764494|r  398 TLGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANG  477 (652)
Q Consensus       398 ~~~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nG  477 (652)
                      |+||.+++||||||++|+.|-+.|||++|+||.+.|+|.||||+++.||++|.+|.|-||||++.|-++|.|||+||++|
T Consensus       411 TmGGL~EKiIPRN~tiP~ARAQ~FTTFKDgQTAM~IhV~QGERELv~dcRSLArF~LRGIPpm~AGaA~IRVTfQvDADG  490 (628)
T TIGR01991       411 TMGGLMEKIIPRNSTIPVARAQDFTTFKDGQTAMVIHVVQGERELVADCRSLARFELRGIPPMVAGAARIRVTFQVDADG  490 (628)
T ss_pred             HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHCCHHHHHCCCCCCCCCCCCCEEEEEEEECCCC
T ss_conf             20673566527862998512665545455852668876513146675162144230378984325884476787750552


Q ss_pred             HHHHHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHH
Q ss_conf             1222102344420000000000011245668999999998999899999999999999999999999987220-299899
Q gi|255764494|r  478 IVQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGD-KIAEAE  556 (652)
Q Consensus       478 il~Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~-klse~e  556 (652)
                      +|+|||.|++||.+++|.+|++|||++.+|++|++|+..++++|+..|.+.|++-++++++..+...|....+ .++++|
T Consensus       491 LL~VsA~E~stGV~a~i~VKPsYGL~D~eI~~MlkDs~s~a~~D~~AR~l~E~~VEa~r~l~a~~aAL~~D~~rLL~~~E  570 (628)
T TIGR01991       491 LLSVSAEEKSTGVEASIEVKPSYGLTDAEIAQMLKDSLSYAEEDMAARALAEAKVEAERLLEALDAALALDSDRLLDEEE  570 (628)
T ss_pred             CCCCEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             34403011046723688883576888689999999887657877999865355778999999999999851885116888


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999999999998724898789999999999999999999999840344556
Q gi|255764494|r  557 QKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAA  609 (652)
Q Consensus       557 k~~i~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~~~  609 (652)
                      +..|.+.++.+.+.+.+.+  .+.|+..+++|.+....|..|.|.+.-+....
T Consensus       571 ~q~I~~~~~~L~~~a~g~d--~~aI~~~i~~l~~~T~~FAarRMd~~v~~aL~  621 (628)
T TIGR01991       571 RQAIKAAVADLQGVAKGSD--AEAIEQAIKKLDKVTDAFAARRMDRSVRRALT  621 (628)
T ss_pred             HHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999998635883--78999999998775389999874057898837


No 13 
>KOG0102 consensus
Probab=100.00  E-value=0  Score=1016.54  Aligned_cols=606  Identities=67%  Similarity=1.018  Sum_probs=590.3

Q ss_pred             CEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHH
Q ss_conf             16998048660699999899559975689862562799994899899667898633308351100206754986872678
Q gi|255764494|r    3 KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTV   82 (652)
Q Consensus         3 ~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~   82 (652)
                      +|||||+|||||++|++.++.+.++.|.+|.|+|||+|+|+.++++++|..|++|+..||.|||+..||||||.|+|+++
T Consensus        28 ~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ev  107 (640)
T KOG0102          28 KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEV  107 (640)
T ss_pred             CEEEEEEECCCEEEEEEECCCCEEEECCCCCCCCCCEEEEECCCCEEECCHHHHHHCCCCCCEEEEEHHHHHHHCCCHHH
T ss_conf             52567541343247887079754764365423588568883144278644135443048875378764445564167888


Q ss_pred             HHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf             76520198699975998279995795871999999999999999999838847336985377887402578863442112
Q gi|255764494|r   83 AKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAG  162 (652)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AG  162 (652)
                      +++++..||+++...|+...++..|+.|+|.++.+|+|.++++.|+.|++.++.++|+|||+||++.|||||++|.+|||
T Consensus       108 q~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag~iag  187 (640)
T KOG0102         108 QKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQIAG  187 (640)
T ss_pred             HHHHHHCCCCEEECCCCCEEEEECCEEECHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf             89987377315873687479996776746889899999999999999717515642650178774888887676664315


Q ss_pred             CCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             22222221024788886034456550799872441145431010231465420133224552134476655367876420
Q gi|255764494|r  163 LDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKE  242 (652)
Q Consensus       163 l~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~  242 (652)
                      |+|+|.+|||||||++||++++.++.++|||+||||||+||+.+.+|+|+|.+|.||.+|||.|||..+++|+.++|++.
T Consensus       188 l~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~fk~~  267 (640)
T KOG0102         188 LNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKE  267 (640)
T ss_pred             CEEECCCCCCCHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             20203678631667762236667775599985886266550012064268973167624472577789999877766204


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHC
Q ss_conf             13430244789999999999885411556503586304434678872126873110000123420000110011110101
Q gi|255764494|r  243 NGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDA  322 (652)
Q Consensus       243 ~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a  322 (652)
                      .++|+..+.++++||+.++||+|+.||..+++.+++|+++.|..+++++++++||.+||+++.++++|.++||.++|++|
T Consensus       268 ~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~aL~dA  347 (640)
T KOG0102         268 EGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKALRDA  347 (640)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEECCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             67451356999999998787665442010031401430222677870688741299898761788874132899988754


Q ss_pred             CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCCCCCE
Q ss_conf             35631101466307853056778865410111111135653101111100022346752210000235665322233420
Q gi|255764494|r  323 GLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGV  402 (652)
Q Consensus       323 ~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~~~~~  402 (652)
                      ++..+||+.|+||||.+|||+|++.+.+.||+.++.++||||+||.|||+|+++|+++++|++|+||+|++||||+.||.
T Consensus       348 ~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkdvlLLdVtpLsLgietlggv  427 (640)
T KOG0102         348 SLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGIETLGGV  427 (640)
T ss_pred             CCCHHHHHHHHHHCCHHHCHHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHCCCHHHCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf             68834433431224320147799999998388998886985110042331540221433210466154277778854134


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHH
Q ss_conf             24663389811024566545676412221100001222222222334531024567674435320000100110012221
Q gi|255764494|r  403 FTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQVS  482 (652)
Q Consensus       403 ~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGil~Vs  482 (652)
                      |++||||||+||+++++.|+|..|+|+.|.|+|+||||+++.+|++||+|.+.||||+|+|.|+|+|+|+||+|||++|+
T Consensus       428 ft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI~~vs  507 (640)
T KOG0102         428 FTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGIGTVS  507 (640)
T ss_pred             HEECCCCCCCCCCHHHHHEEECCCCCCEEEEEEEECHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCEEEEE
T ss_conf             20224577636711443201002687247787663146663167530024530268877788852578861477514531


Q ss_pred             CCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             02344420000000000011245668999999998999899999999999999999999999987220299899999999
Q gi|255764494|r  483 ALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRE  562 (652)
Q Consensus       483 a~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~~i~~  562 (652)
                      |.++.|++.++|+|..+++||+++|++|+.++++++..|+..|+.++.+|.+++++|+++..+.++.++++.++..+|..
T Consensus       508 A~dk~t~K~qsi~i~~sggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~~~~~~~~~~~~~i~~  587 (640)
T KOG0102         508 AKDKGTGKSQSITIASSGGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKEFEEKIPAEECEKLEE  587 (640)
T ss_pred             HHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCHHHHHHHHHHCCHHHHHHHHH
T ss_conf             10103487554698605887889999999999987765677788764112100021276655233144375788888999


Q ss_pred             HHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999998724-89878999999999999999999999984034455
Q gi|255764494|r  563 SIDALRTLLND-ADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDA  608 (652)
Q Consensus       563 ~l~e~e~wl~~-~~~d~~~i~~~~~~L~e~~~~i~~~~~~~~~~~~~  608 (652)
                      .+..+.+.+.. +..+...++.+...|++...++++.+|+..+....
T Consensus       588 ~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~~~~~  634 (640)
T KOG0102         588 KISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNMGAGGE  634 (640)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999733024770568999999987656999999743024688


No 14 
>KOG0101 consensus
Probab=100.00  E-value=0  Score=991.08  Aligned_cols=596  Identities=52%  Similarity=0.842  Sum_probs=569.4

Q ss_pred             CCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH
Q ss_conf             81699804866069999989955997568986256279999489989966789863330835110020675498687267
Q gi|255764494|r    2 SKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDST   81 (652)
Q Consensus         2 s~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~   81 (652)
                      +.+||||||||||+|+++.++.+++++|+.|+|.|||+|+|.++ ++++|.+|+.|..+||+||++++||+||+.|+|+.
T Consensus         7 ~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~-e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~   85 (620)
T KOG0101           7 SVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDT-ERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPE   85 (620)
T ss_pred             CCEEEEECCCCCCEEEEECCCCCEEEECCCCCCCCCCEEEECCC-CCCHHHHHHHHHHCCCCCEEEEHHHHCCCCCCCHH
T ss_conf             64145750676422446748843155456667545531445465-30045666566500876505651333176456456


Q ss_pred             HHHHHHCCCEEEEECCCCEEEEEE----CCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf             876520198699975998279995----7958719999999999999999998388473369853778874025788634
Q gi|255764494|r   82 VAKDASLVPFKIVEGKGGDAWIEA----QGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDA  157 (652)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~A  157 (652)
                      ++..+++|||++....++.+.+.+    ..+.|+|+++++|+|.+++..|+.|||.++.++|+|||+||++.||+|+.+|
T Consensus        86 v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A  165 (620)
T KOG0101          86 VQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDA  165 (620)
T ss_pred             HHHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEEHHCCCCHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHH
T ss_conf             67777538753234457861488514665204423553201315137899987447010699996487477899998879


Q ss_pred             HHHCCCCCCCCCCCHHHHHHHHHCCCC--CCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf             421122222222102478888603445--655079987244114543101023146542013322455213447665536
Q gi|255764494|r  158 GRIAGLDVLRIINEPTAAALAYGLDKK--DARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHI  235 (652)
Q Consensus       158 a~~AGl~v~~li~EptAAal~Y~~~~~--~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~  235 (652)
                      |.+|||+++|+|||||||||+|+++++  ...+|+|||+||||||||++.+.+|.+.|+++.||++|||.|||+.|++||
T Consensus       166 ~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h~  245 (620)
T KOG0101         166 ALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNHF  245 (620)
T ss_pred             HHHCCCCEEEEECCHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             98568850364061689998754144656503589997689835545677336500111220365544113577899999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCC
Q ss_conf             78764201343024478999999999988541155650358630443467887212687311000012342000011001
Q gi|255764494|r  236 CDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPC  315 (652)
Q Consensus       236 ~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i  315 (652)
                      +.+|+++++.|++.|+++++||+.+||++|+.||+..++++.+++|++    |.||...|||.+||.+|.+++.+++.++
T Consensus       246 ~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~----g~d~~~~itrarfe~l~~dlf~~~~~~v  321 (620)
T KOG0101         246 AAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYE----GIDFYTSITRARFEELNADLFRSTLEPV  321 (620)
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHC----CCCCCCEEEHHHHHHHHHHHHHHHHHHH
T ss_conf             999987613465424678888888999887540344431001221212----4533332015554312237888877888


Q ss_pred             CCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHCCCCCCC----CCCCHHEECCC
Q ss_conf             11101013563110146630785305677886541011-11111356531011111000223467----52210000235
Q gi|255764494|r  316 KKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN-KSPSKGVNPDEVVAMGAAIQAGVLQG----DVKDLLLLDVT  390 (652)
Q Consensus       316 ~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg-~~~~~~~npdeaVa~GAA~~a~~ls~----~~~~~~~~dv~  390 (652)
                      +++|+++++++.+|+.|+|||||||||++|..++++|+ ++++.++||||+||+|||+|||++++    .+.++++.|+.
T Consensus       322 ~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~  401 (620)
T KOG0101         322 EKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVA  401 (620)
T ss_pred             HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
T ss_conf             88887623575677426872663446678999998741210246788778777647777652158764223441453023


Q ss_pred             CCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             66532223342024663389811024566545676412221100001222222222334531024567674435320000
Q gi|255764494|r  391 PLSLGIETLGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVA  470 (652)
Q Consensus       391 p~slgie~~~~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vt  470 (652)
                      |+++||++.+|.|+++|+|||++|++++++|+|+.|||+.+.|+||||||.+++||..||.|.|.||||+|+|.|+|+|+
T Consensus       402 pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~Ievt  481 (620)
T KOG0101         402 PLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVT  481 (620)
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEE
T ss_conf             55544201477201232046656502333214214688843788886420015667500157635899765677544899


Q ss_pred             HHCCCCHHHHHHCCCCCCCCHHCHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1001100122210234442000000000-001124566899999999899989999999999999999999999998722
Q gi|255764494|r  471 FDIDANGIVQVSALDKGTGKAQQISIQA-SGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHG  549 (652)
Q Consensus       471 f~id~nGil~Vsa~~~~t~~~~~i~i~~-~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~  549 (652)
                      |.+|.||||+|+|.+++||+.+.++|.+ .++||+++|++|..+|+.+..+|...++++.++|.+|+|+|.++..+++..
T Consensus       482 fdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~  561 (620)
T KOG0101         482 FDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK  561 (620)
T ss_pred             EECCCCCEEEEEECCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             95278877877721456776331898546233407677777666553013388899899877558899876441344420


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02998999999999999999872489-878999999999999999999999984
Q gi|255764494|r  550 DKIAEAEQKSIRESIDALRTLLNDAD-PDESKIKEATQKLMEVSMNLGKAIYEA  602 (652)
Q Consensus       550 ~klse~ek~~i~~~l~e~e~wl~~~~-~d~~~i~~~~~~L~e~~~~i~~~~~~~  602 (652)
                      ++++++++.++.+.+.+...||+.+. ....+++.+..+|+..+.++..++|+.
T Consensus       562 ~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~  615 (620)
T KOG0101         562 GKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG  615 (620)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHCCCC
T ss_conf             537866777789999999998751553331178999989986502887750157


No 15 
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00  E-value=0  Score=959.80  Aligned_cols=573  Identities=63%  Similarity=0.937  Sum_probs=550.0

Q ss_pred             CCEEEEECCCCEEEEEEEECC-EEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf             816998048660699999899-5599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r    2 SKVIGIDLGTTNSCVAIMDGK-NVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS   80 (652)
Q Consensus         2 s~viGIDlGtt~s~va~~~~~-~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~   80 (652)
                      +.+||||||||||+||+++++ .+.++.|..|.|.|||+|+|..++++++|..|++++..||.+|++++||+||+.    
T Consensus         5 ~~~iGIDlGTTNS~vA~~~~~~~~~v~~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~----   80 (579)
T COG0443           5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRG----   80 (579)
T ss_pred             CEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCCCCEEEEECCCCCEEECHHHHHHHHHCCCCEEEEEECCCCCC----
T ss_conf             7178996177628999980798605701887775675389988998788669999876608866289986146877----


Q ss_pred             HHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             78765201986999759982799957958719999999999999999998388473369853778874025788634421
Q gi|255764494|r   81 TVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRI  160 (652)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~  160 (652)
                                     .......+.+.++.|+|+||++++|++||+.|+.+++.+++++|||||+||++.||+++++||++
T Consensus        81 ---------------~~~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~i  145 (579)
T COG0443          81 ---------------SNGLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARI  145 (579)
T ss_pred             ---------------CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             ---------------66776226646813389999999999999999987388764589992487578899999999986


Q ss_pred             CCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             12222222210247888860344565507998724411454310102314654201332245521344766553678764
Q gi|255764494|r  161 AGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK  240 (652)
Q Consensus       161 AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~  240 (652)
                      |||+++||+|||||||++|++++..+++|+||||||||||+||+++.+|.++|+++.||.+|||+|||.+|++|++.+|+
T Consensus       146 aGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~  225 (579)
T COG0443         146 AGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFK  225 (579)
T ss_pred             CCCCEEEECCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             69972452160599999977334888579999868988678999984868998652788754815489999999998850


Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCH
Q ss_conf             20134302447899999999998854115565035863044346788721268731100001234200001100111101
Q gi|255764494|r  241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQ  320 (652)
Q Consensus       241 ~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~  320 (652)
                      +++++|++.++++++||+.+||++|+.||+++++.++++++..+    +++..+|||++||+++.+++.++..+++++|.
T Consensus       226 ~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~----~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~  301 (579)
T COG0443         226 GKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFEELILDLLERTIEPVEQALK  301 (579)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             24886612037799999999999999714562202102121464----05666725999987778999999999999999


Q ss_pred             HCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCCCC
Q ss_conf             01356311014663078530567788654101111111356531011111000223467522100002356653222334
Q gi|255764494|r  321 DAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLG  400 (652)
Q Consensus       321 ~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~~~  400 (652)
                      ++++++.+|+.|+||||+||||.|++.++++||+++.+++||||+||.|||+||+.+++...++++.|++|+++|+++.+
T Consensus       302 ~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~d~ll~Dv~plslgie~~~  381 (579)
T COG0443         302 DAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLG  381 (579)
T ss_pred             HCCCCHHHCCEEEEECCEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCC
T ss_conf             74998532766998357755666999999982877435779747899999999876248766605888876305414474


Q ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHH
Q ss_conf             20246633898110245665456764122211000012222222223345310245676744353200001001100122
Q gi|255764494|r  401 GVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQ  480 (652)
Q Consensus       401 ~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~~i~~i~~~~~G~~~I~vtf~id~nGil~  480 (652)
                      +.+.++|+||+++|++++..|+|..|+|+.+.++++|||+.++.+|..||.|++.+|||+|+|.|+|+|+|.+|.||+++
T Consensus       382 ~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~  461 (579)
T COG0443         382 GVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILN  461 (579)
T ss_pred             HHHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEEEEECCHHHHCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCEEE
T ss_conf             36663675079998643413564168874158899605312203676301355477887768887279995358875478


Q ss_pred             HHCCCCCCCCHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             21023444200000000000112456689999999989998999999999999999999999999872202998999999
Q gi|255764494|r  481 VSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSI  560 (652)
Q Consensus       481 Vsa~~~~t~~~~~i~i~~~~~Ls~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~~~klse~ek~~i  560 (652)
                      |++.++.+|++++++|+.+.+|++++|++|+++++.+++.|+..++..+.+|+++.+++.+++.|++.. ++++++++.+
T Consensus       462 v~a~~~~~~k~~~i~i~~~~~l~~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~  540 (579)
T COG0443         462 VTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKI  540 (579)
T ss_pred             EEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHH
T ss_conf             750025788557899637888887898653446777565455667666325407789999998760324-6877779999


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999987248987899999999999999999999998
Q gi|255764494|r  561 RESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYE  601 (652)
Q Consensus       561 ~~~l~e~e~wl~~~~~d~~~i~~~~~~L~e~~~~i~~~~~~  601 (652)
                      ...++++++||++ +  ..+++.+.++|++..+++..+.|+
T Consensus       541 ~~~~~~~~~~l~~-~--~~~~~~~~~~l~~~~~~~~~~~~~  578 (579)
T COG0443         541 EEAITDLEEALEG-E--KEEIKAKIEELQEVTQKLAEKKYQ  578 (579)
T ss_pred             HHHHHHHHHHHHC-C--HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999998723-4--988988899999987676677505


No 16 
>KOG0103 consensus
Probab=100.00  E-value=0  Score=859.19  Aligned_cols=582  Identities=32%  Similarity=0.536  Sum_probs=520.4

Q ss_pred             CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf             98169980486606999998995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS   80 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~   80 (652)
                      || |+|||||+.||.+|+++.++.++|.|+.|+|.||++|+|+++ .|++|.+|+++..+|+.||+.++|||+||.|+||
T Consensus         1 ms-vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K-~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP   78 (727)
T KOG0103           1 MS-VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPK-NRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDP   78 (727)
T ss_pred             CC-CEEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEECCC-CCEEEECCCCCEEECCCCCCHHHHHHHCCCCCCH
T ss_conf             98-313302665434432021773355304333457522322566-5245431564222020026336665504234783


Q ss_pred             HHHHHHHCCCEEEEECCCCEEEEEEC----CEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHH
Q ss_conf             78765201986999759982799957----95871999999999999999999838847336985377887402578863
Q gi|255764494|r   81 TVAKDASLVPFKIVEGKGGDAWIEAQ----GKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKD  156 (652)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~  156 (652)
                      .+|.+.+++||+++..++|.+++.+.    .+.|+|+||+||+|.+||.+|+..+..++.+|||+||+||++.||+++++
T Consensus        79 ~~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravld  158 (727)
T KOG0103          79 EVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLD  158 (727)
T ss_pred             HHHHCCCCCCHHEEECCCCCCCEEEHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf             76531000653205668887000211026788997389999999998999998647888870386430005788888872


Q ss_pred             HHHHCCCCCCCCCCCHHHHHHHHHCCCCC-------CCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHH
Q ss_conf             44211222222221024788886034456-------55079987244114543101023146542013322455213447
Q gi|255764494|r  157 AGRIAGLDVLRIINEPTAAALAYGLDKKD-------ARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDS  229 (652)
Q Consensus       157 Aa~~AGl~v~~li~EptAAal~Y~~~~~~-------~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~  229 (652)
                      ||++|||+++||+||.||+||+||+.+.+       +++|+++|||++++.+|++.|.+|.+.++++.+|++|||++||.
T Consensus       159 AA~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe  238 (727)
T KOG0103         159 AARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDE  238 (727)
T ss_pred             HHHHCCCCCEEEEECCHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHH
T ss_conf             77536754035651153767530310266887555764478875265411441102045752122320240115621889


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHH
Q ss_conf             66553678764201343024478999999999988541155650358630443467887212687311000012342000
Q gi|255764494|r  230 CLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQ  309 (652)
Q Consensus       230 ~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~  309 (652)
                      +|.+||+++|+.+|++|++.|++|+.||+.+|||+|+.||+|+.++++|++++++    +|++..|+|++||++|.|+++
T Consensus       239 ~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d----~dvs~~i~ReEfEel~~plL~  314 (727)
T KOG0103         239 ALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMND----KDVSSKIKREEFEELSAPLLE  314 (727)
T ss_pred             HHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEC----CHHHHHCCHHHHHHHHHHHHH
T ss_conf             9999999984546650353254578999999999999860476788444003405----304414248999998899998


Q ss_pred             HHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC--CCCCHHEE
Q ss_conf             0110011110101356311014663078530567788654101111111356531011111000223467--52210000
Q gi|255764494|r  310 KTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG--DVKDLLLL  387 (652)
Q Consensus       310 ~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~--~~~~~~~~  387 (652)
                      |+..|+.++|++++++.+||+.|++|||+||||.|+++|+++||+++.+++|.|||||+|||+|||+|||  +++++.+.
T Consensus       315 rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~  394 (727)
T KOG0103         315 RVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVE  394 (727)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEECCEE
T ss_conf             61378999999815761464059985586532678999999847765621048999987588777761840011120100


Q ss_pred             CCCCCCCCCCCCC-----CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2356653222334-----202466338981102456654567641222110000122-2222222334531024567674
Q gi|255764494|r  388 DVTPLSLGIETLG-----GVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGE-RKMFADNKLLGQFDLVGIPPAP  461 (652)
Q Consensus       388 dv~p~slgie~~~-----~~~~~ii~~~~~iP~~k~~~f~t~~d~q~~i~i~v~eGe-~~~~~~n~~lg~~~i~~i~~~~  461 (652)
                      |+.||++.+.|.+     +....+||+|.++|..|..||.+..+|    .+.+++.. ..+...-..|++|++.++.|..
T Consensus       395 Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~~F----~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~  470 (727)
T KOG0103         395 DIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKGPF----TLEAKYTKVNKLPYPKPKIEKWTITGVTPSE  470 (727)
T ss_pred             CCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCE----EEEEEECCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf             243114799833663457873056047887887347888705864----8898733600069987741368843643576


Q ss_pred             CCC-CCCCHHHHCCCCHHHHHHCC--------------CCC--C---C------CHHC-------HHH--CCCCCCCHHH
Q ss_conf             435-32000010011001222102--------------344--4---2------0000-------000--0000112456
Q gi|255764494|r  462 KGT-PQIEVAFDIDANGIVQVSAL--------------DKG--T---G------KAQQ-------ISI--QASGGLSSED  506 (652)
Q Consensus       462 ~G~-~~I~vtf~id~nGil~Vsa~--------------~~~--t---~------~~~~-------i~i--~~~~~Ls~ee  506 (652)
                      .|. .+++|..++|.+||++++..              ...  +   +      .+.+       +.+  ...++|+..+
T Consensus       471 ~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~  550 (727)
T KOG0103         471 DGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDE  550 (727)
T ss_pred             CCCCCCEEEEEEECCCCCEEEECCEEECCCCHHCCCCCHHHHHCCHHHHHHHCCCCCCCEEEECCCCCEEEECCCCCHHH
T ss_conf             66656136899875766236640244111111002222222201223344423445654145305542000024558889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHH--HHHH
Q ss_conf             68999999998999899999999999999999999999987-22029989999999999999998724898789--9999
Q gi|255764494|r  507 IEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLRE-HGDKIAEAEQKSIRESIDALRTLLNDADPDES--KIKE  583 (652)
Q Consensus       507 i~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e-~~~klse~ek~~i~~~l~e~e~wl~~~~~d~~--~i~~  583 (652)
                      ++..++...+|..+|+...++.++||.+|+|||++|.+|.+ +.++++++++++|...++++++|||+++.|..  .|..
T Consensus       551 l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~  630 (727)
T KOG0103         551 LELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVA  630 (727)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             99998888876642113555321777899999999998654665432788999999988888877774176431588999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q gi|255764494|r  584 ATQKLMEVS  592 (652)
Q Consensus       584 ~~~~L~e~~  592 (652)
                      ++++|....
T Consensus       631 kl~elk~~g  639 (727)
T KOG0103         631 KLEELKKLG  639 (727)
T ss_pred             HHHHHHHHH
T ss_conf             999998621


No 17 
>KOG0104 consensus
Probab=100.00  E-value=0  Score=724.49  Aligned_cols=597  Identities=28%  Similarity=0.434  Sum_probs=508.2

Q ss_pred             CCEEEEECCCCEEEEEEEECCEE-EEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf             81699804866069999989955-99756898625627999948998996678986333083511002067549868726
Q gi|255764494|r    2 SKVIGIDLGTTNSCVAIMDGKNV-RVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS   80 (652)
Q Consensus         2 s~viGIDlGtt~s~va~~~~~~~-~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~   80 (652)
                      ++|.+||||+.|..||++.+|.| +|++|.+++|++||+|+|. +++|+||++|.+++.++|.+++..++.|+|+.+.||
T Consensus        22 ~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk-~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~  100 (902)
T KOG0104          22 LAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFK-GGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDP  100 (902)
T ss_pred             HHHEEEECCCCEEEEEEECCCCCEEEEECHHHCCCCCCEEEEC-CCCEEHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
T ss_conf             0330540365225788834999707864513225686158861-784533656645654092889999998747645770


Q ss_pred             HHHHHHHCCC-EEEEECC-CCEEEEEECC-EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf             7876520198-6999759-9827999579-58719999999999999999998388473369853778874025788634
Q gi|255764494|r   81 TVAKDASLVP-FKIVEGK-GGDAWIEAQG-KQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDA  157 (652)
Q Consensus        81 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~-~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~A  157 (652)
                      .++.+.+.+| |.++.++ .+.+.|.+.+ ..|++|+++||+|.+.++.|+.+...+|+++|||||+||+++||+|+++|
T Consensus       101 ~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~A  180 (902)
T KOG0104         101 TVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQA  180 (902)
T ss_pred             HHHHHHHCCCCEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCHHHHHHHHHH
T ss_conf             88898711876342136766437898178541679999999999999999998736143269967864588999999989


Q ss_pred             HHHCCCCCCCCCCCHHHHHHHHHCCCC-----CCCEEEEEEECCCEEEEEEEEEC----------CCEEEEECCCCCCCC
Q ss_conf             421122222222102478888603445-----65507998724411454310102----------314654201332245
Q gi|255764494|r  158 GRIAGLDVLRIINEPTAAALAYGLDKK-----DARTVIVFDFGGGTFDVSLLEMG----------DGVFEVKATNGDTFL  222 (652)
Q Consensus       158 a~~AGl~v~~li~EptAAal~Y~~~~~-----~~~~vlV~D~Gggt~dvsi~~~~----------~~~~~vl~~~gd~~l  222 (652)
                      |+|||++|++||||.+||||.||+++.     .+++++|||||+|++.++|+.+.          ...+++++.++|++|
T Consensus       181 a~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tL  260 (902)
T KOG0104         181 AQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTL  260 (902)
T ss_pred             HHHCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCC
T ss_conf             88628511121156508776520110346788860799996478842699999982213225676644899862147766


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCC
Q ss_conf             52134476655367876420134--3024478999999999988541155650358630443467887212687311000
Q gi|255764494|r  223 GGEDFDSCLVEHICDTFKKENGI--DLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF  300 (652)
Q Consensus       223 GG~d~D~~l~~~~~~~~~~~~~~--d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~f  300 (652)
                      ||..|.++|.+|+...|.++++.  |++.|+|||.||.++|+|+|..||+|..+.++|+++.+|    +||..+|||++|
T Consensus       261 GG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~dd----iDFr~kvTRe~f  336 (902)
T KOG0104         261 GGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDD----IDFRLKVTREEF  336 (902)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC----CCCCCCEEHHHH
T ss_conf             5177888999999999988638743112498899999999999988860460667779887505----430121019999


Q ss_pred             CCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf             012342000011001111010135631101466307853056778865410111-1111356531011111000223467
Q gi|255764494|r  301 ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK-SPSKGVNPDEVVAMGAAIQAGVLQG  379 (652)
Q Consensus       301 e~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~-~~~~~~npdeaVa~GAA~~a~~ls~  379 (652)
                      |++|.++..|+..||++||..|+++.++|+.|+|+||+||+|.||+.|.++.|+ ++.+++|+|||+|+||++|||.||.
T Consensus       337 Eelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSk  416 (902)
T KOG0104         337 EELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSK  416 (902)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             99998888864345999998647880000106883475567359999999973898742468147888789988776404


Q ss_pred             --CCCCHHEECCCCCCCCCC--CCCC------EEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCCHHCCCCCCCCCCCCC
Q ss_conf             --522100002356653222--3342------02466338981102456654567641-222110000122222222233
Q gi|255764494|r  380 --DVKDLLLLDVTPLSLGIE--TLGG------VFTSIIDRNSTIPTKKSQVFSTAADN-QSAVSIRIGQGERKMFADNKL  448 (652)
Q Consensus       380 --~~~~~~~~dv~p~slgie--~~~~------~~~~ii~~~~~iP~~k~~~f~t~~d~-q~~i~i~v~eGe~~~~~~n~~  448 (652)
                        +++.+.+.|..+|++-++  +..|      ....+|++|.+||.++..+|+.+.|+ ...+.+..++       +  -
T Consensus       417 sFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~~~~~-------~--n  487 (902)
T KOG0104         417 SFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINYGDLG-------Q--N  487 (902)
T ss_pred             CCCCCCEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHC-------C--C
T ss_conf             632122035642433289995467764456314888886178678863242466677630012456644-------6--7


Q ss_pred             CCCCCCCCCCCC----CCC---CCCCCHHHHCCCCHHHHHHCCC-------------------C----------------
Q ss_conf             453102456767----443---5320000100110012221023-------------------4----------------
Q gi|255764494|r  449 LGQFDLVGIPPA----PKG---TPQIEVAFDIDANGIVQVSALD-------------------K----------------  486 (652)
Q Consensus       449 lg~~~i~~i~~~----~~G---~~~I~vtf~id~nGil~Vsa~~-------------------~----------------  486 (652)
                      +..|.|.|+.-+    +..   ..-|+++|.+|.+|++.|+-.+                   +                
T Consensus       488 l~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~  567 (902)
T KOG0104         488 LTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQ  567 (902)
T ss_pred             CCEEEEECCHHHHHHCCCCHHHCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             50899822137877465501204571599998276756874146888415775431046565304666323435555320


Q ss_pred             --------------CCCCH-------------H--------------------CHHHCCCC----CCCHHHHHHHHHHHH
Q ss_conf             --------------44200-------------0--------------------00000000----112456689999999
Q gi|255764494|r  487 --------------GTGKA-------------Q--------------------QISIQASG----GLSSEDIEKMVKDAE  515 (652)
Q Consensus       487 --------------~t~~~-------------~--------------------~i~i~~~~----~Ls~eei~~~~~eae  515 (652)
                                    +++.+             +                    .+.|+..+    -|++..++......+
T Consensus       568 ~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~  647 (902)
T KOG0104         568 EEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLE  647 (902)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             23455514686544566432223321013332000100474111035676226765456326656776668999999889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHH
Q ss_conf             98999899999999999999999999999987--220299899999999999999987248987--89999999999999
Q gi|255764494|r  516 MNAEMDKKRREAVETKNHAESLIYSTEQSLRE--HGDKIAEAEQKSIRESIDALRTLLNDADPD--ESKIKEATQKLMEV  591 (652)
Q Consensus       516 ~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e--~~~klse~ek~~i~~~l~e~e~wl~~~~~d--~~~i~~~~~~L~e~  591 (652)
                      .+.+.|+.+.++.++-|.||.++|.++.+|++  +.+..+++|++.|.+.+..+.+||+++..+  ...+.+++.+|+++
T Consensus       648 d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l  727 (902)
T KOG0104         648 DFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKL  727 (902)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             99874325778999998999999999987447367664289899999999999999987640246266788899999998


Q ss_pred             HHHHHHHHHHHHCCCCCCCCC
Q ss_conf             999999999840344556666
Q gi|255764494|r  592 SMNLGKAIYEAQAKKDAAADT  612 (652)
Q Consensus       592 ~~~i~~~~~~~~~~~~~~~~~  612 (652)
                      ...+..+..+..+.++.....
T Consensus       728 ~~~~~~R~ee~kq~pe~l~~l  748 (902)
T KOG0104         728 ETSKNFREEERKQFPEELEAL  748 (902)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             721237899988615799999


No 18 
>PRK11678 putative chaperone; Provisional
Probab=100.00  E-value=0  Score=531.10  Aligned_cols=360  Identities=27%  Similarity=0.368  Sum_probs=275.1

Q ss_pred             EEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHH--------HHHHCCCC
Q ss_conf             9980486606999998995599756898625627999948998996678986333083511002--------06754986
Q gi|255764494|r    5 IGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFA--------AKRLIGRR   76 (652)
Q Consensus         5 iGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~--------~KrliG~~   76 (652)
                      ||||||||||+||++++|.|++|+++.|.+.+||+|++.+ . .+++..+..+....|.+++..        ++|.++..
T Consensus         3 IGIDfGTTNS~VAv~~~g~~~vi~~~~~~~~~PS~v~~~~-~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~   80 (450)
T PRK11678          3 IGFDYGTANCSVAVMRDGKPQLLPLENDSTYLPSTLCAPT-R-EAVSEWLYRHLDVPAKDDERQALLRRAIRYNREEDID   80 (450)
T ss_pred             EEEEECHHHEEEEEEECCEEEEEECCCCCCCCCEEEEECC-C-CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             9998471323328998998899981898925565899447-5-0444899865022643205676666665302112346


Q ss_pred             CCCHHHHHHHHCCCEEEEECCCCEEEEE-----ECCE------EECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             8726787652019869997599827999-----5795------8719999999999999999998388473369853778
Q gi|255764494|r   77 FNDSTVAKDASLVPFKIVEGKGGDAWIE-----AQGK------QYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAY  145 (652)
Q Consensus        77 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~  145 (652)
                      ..+..+......... ....+.....++     .+..      ....++|++.+|++||..||.++|.+++++|||||+|
T Consensus        81 ~~~~~~~~g~~a~~~-~~~~p~~~~~v~s~k~~Lg~~~~~~~q~~~~e~lva~iL~~lk~~Ae~~lg~~v~~aVItvPa~  159 (450)
T PRK11678         81 VTAQSVFFGLAALAQ-YLEDPEEGYYVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAESQLQAAITQAVIGRPVN  159 (450)
T ss_pred             CCCCCEEECHHHHHH-HHCCCCCEEEEECCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             676516514888987-7438874037414501036667771022139999999999999999998388755328972773


Q ss_pred             CC-----CCHHHHH---HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCC-------E
Q ss_conf             87-----4025788---6344211222222221024788886034456550799872441145431010231-------4
Q gi|255764494|r  146 FN-----DAQRQAT---KDAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDG-------V  210 (652)
Q Consensus       146 f~-----~~qR~a~---~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~-------~  210 (652)
                      |+     +.||+|+   ++||++|||++++|+|||||||++|+.....++++|||||||||||+||+++.++       .
T Consensus       160 F~~~~~d~~~~qA~~~l~~AA~~AGl~~v~~lnEPtAAAlaY~~~~~~~~~vLV~DlGGGT~DvSlv~~~~~~~~~~~~~  239 (450)
T PRK11678        160 FQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDYEATLTEDKTVLVVDIGGGTTDCSLLLMGPSWRGKADRS  239 (450)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEEEECCCCEECCCCC
T ss_conf             56889608999999999999997599736753285899999870568898799999089848887478548711104666


Q ss_pred             EEEECCCCCCCCCCHHHHHHHH-HHHHHHHHHHC----CCC--------------------------------HH---HH
Q ss_conf             6542013322455213447665-53678764201----343--------------------------------02---44
Q gi|255764494|r  211 FEVKATNGDTFLGGEDFDSCLV-EHICDTFKKEN----GID--------------------------------LK---QD  250 (652)
Q Consensus       211 ~~vl~~~gd~~lGG~d~D~~l~-~~~~~~~~~~~----~~d--------------------------------~~---~~  250 (652)
                      ..|++++|+ +|||+|||.+|+ +.+.+.|....    +.+                                +.   ..
T Consensus       240 ~~vla~~G~-~lGG~DfD~~l~~~~~~p~~G~~~~~~~g~~~p~~~~~~~~~~~~i~~q~~~~~~~~~~~l~~l~~~~~~  318 (450)
T PRK11678        240 ASLLGHSGQ-RIGGNDLDIALAFKQLMPLLGMGSETEKGIPMPSLPFWNAVAINDVPAQSDFYSLANRRLLNDLIRDARE  318 (450)
T ss_pred             CCEECCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             512224687-6785668899898776676344520014765751355544422011344443226679999999976315


Q ss_pred             HHHH------------HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             7899------------9999999988541155650358630443467887212687311000012342000011001111
Q gi|255764494|r  251 TLAL------------QRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKC  318 (652)
Q Consensus       251 ~~a~------------~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~  318 (652)
                      +..+            .+|..+||++|+.||.+.++.+.++++.      .+++.+|||++||.+|+|+++|+..+|+++
T Consensus       319 ~~~~~rL~~~~~~~~~~~l~~~aE~aKi~LS~~~~~~~~l~~~~------~~~~~~itr~~fe~~i~~~l~r~~~~~~~~  392 (450)
T PRK11678        319 PEKLARLLKVQRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS------DGLAVEISQQGLEEAISQPLARILELVQLA  392 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC------CCEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             57789999988776657999999999998088971788534777------752778779999999999999999999999


Q ss_pred             CHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf             01013563110146630785305677886541011111113565310111110002234
Q gi|255764494|r  319 LQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVL  377 (652)
Q Consensus       319 L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~l  377 (652)
                      |++|++++   |.|+|||||||||.||+.++++||..+..+.||+++||.|+|++|..+
T Consensus       393 L~~Ag~~~---D~V~lvGGss~iP~Vr~~~~~~Fg~~~~~~~d~~~sVa~GlA~~A~~~  448 (450)
T PRK11678        393 LDQAQVKP---DVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARWAEVV  448 (450)
T ss_pred             HHHCCCCC---CEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99759999---989984863501899999999769997447798432988699999886


No 19 
>pfam06723 MreB_Mbl MreB/Mbl protein. This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl.
Probab=100.00  E-value=0  Score=506.15  Aligned_cols=314  Identities=24%  Similarity=0.375  Sum_probs=256.2

Q ss_pred             CCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCE--EECHHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf             81699804866069999989955997568986256279999489989--9667898633308351100206754986872
Q gi|255764494|r    2 SKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGER--LVGQPAKRQAVTNPSNTIFAAKRLIGRRFND   79 (652)
Q Consensus         2 s~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~--~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d   79 (652)
                      |+.||||||||||+|++...|   ++.|+      ||+|+|..++..  .||..|+++..++|.++.. .+         
T Consensus         1 ~~~iGIDLGTtnS~i~~~~~g---~v~~~------PSvVa~~~~~~~~i~vG~~Ak~~~~~~p~~~~~-~~---------   61 (327)
T pfam06723         1 SKDIGIDLGTANTLVYVKGKG---IVLNE------PSVVAINTKTKKVLAVGNEAKKMLGRTPGNIVA-VR---------   61 (327)
T ss_pred             CCEEEEECCHHHEEEEECCCC---EECCC------CCEEEEECCCCEEEECCHHHHHHCCCCCCCEEE-EE---------
T ss_conf             976899875540899987998---79888------859999879988997239999735479997699-99---------


Q ss_pred             HHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             67876520198699975998279995795871999999999999999999838847336985377887402578863442
Q gi|255764494|r   80 STVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGR  159 (652)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~  159 (652)
                                              ...+..+++.++++.+|++|++.++.+++.++.++|||||+||++.||+||++||+
T Consensus        62 ------------------------~~~~g~~~~~e~~~~il~~l~~~~~~~~~~~~~~aVItVPa~f~~~qR~at~~Aa~  117 (327)
T pfam06723        62 ------------------------PLKDGVIADFEVTEAMLKYFIKKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAK  117 (327)
T ss_pred             ------------------------ECCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             ------------------------77898675788879999999999974027899978999799999999999999999


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             11222222221024788886034456550799872441145431010231465420133224552134476655367876
Q gi|255764494|r  160 IAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTF  239 (652)
Q Consensus       160 ~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~  239 (652)
                      +|||++++||||||||||+||++...+..+||||||||||||||+++.+     +.+.++.+|||+|||++|++|+.++|
T Consensus       118 ~AGl~v~~li~EPtAAAlaygl~~~~~~~~lV~DlGGGT~Dvsvl~~~~-----~~~~~~~~lGG~dfD~~i~~~~~~~~  192 (327)
T pfam06723       118 NAGAREVFLIEEPMAAAIGAGLPVEEPTGNMVVDIGGGTTEVAVISLGG-----IVTSKSVRVAGDEMDEAIIKYIRKKY  192 (327)
T ss_pred             HCCCCEEEEECCHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEEECC-----EEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             7699879986647999987188766886049999579827999998388-----67775525034016899999999865


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             420134302447899999999998854115565035863--044346788721268731100001234200001100111
Q gi|255764494|r  240 KKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINL--PFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKK  317 (652)
Q Consensus       240 ~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i--~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~  317 (652)
                          ++++.         ...||++|+.||....+....  +....+...|..+++.|||++|+++|+|+++++.++|++
T Consensus       193 ----~~~i~---------~~~ae~~K~~ls~~~~~~~~~~~~~~~~d~~~g~~~~~~it~~e~~~~~~~~~~~~~~~i~~  259 (327)
T pfam06723       193 ----NLLIG---------ERTAERIKIEIGSAYPTEEEEKMEIRGRDLVTGLPKTIEISSEEVREALKEPVSAIVEAVKE  259 (327)
T ss_pred             ----HHHHC---------HHHHHHHHHHHHHCHHCCCCCCEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ----04428---------89999999998747220046766874342346886532754999999999999999999999


Q ss_pred             CCHHC--CCCCEEEEE-EEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             10101--356311014-663078530567788654101111111356531011111000223
Q gi|255764494|r  318 CLQDA--GLSPSDIDE-VVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGV  376 (652)
Q Consensus       318 ~L~~a--~~~~~~I~~-V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~  376 (652)
                      +|+++  .+..+.++. |+|||||||||.|+++|+++||+++..++|||||||+|||+++..
T Consensus       260 ~L~~~~~~l~~d~~d~~ViLvGGsSriP~v~~~l~~~fg~~~~~~~nPd~aVA~GAAi~~~~  321 (327)
T pfam06723       260 VLEKTPPELAADIVDRGIVLTGGGALLRGLDKLLSDETGLPVHIAEDPLTCVALGTGKALEN  321 (327)
T ss_pred             HHHHCCHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             99856264521214782999776244147999999997849888988677999989999857


No 20 
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00  E-value=0  Score=481.78  Aligned_cols=316  Identities=24%  Similarity=0.336  Sum_probs=255.2

Q ss_pred             CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCC-EE-ECHHHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf             98169980486606999998995599756898625627999948998-99-66789863330835110020675498687
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGE-RL-VGQPAKRQAVTNPSNTIFAAKRLIGRRFN   78 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~-~~-vG~~A~~~~~~~p~~ti~~~KrliG~~~~   78 (652)
                      ||+.||||||||||+|++...|   ++.|+      ||+|+|..++. .+ ||+.|+++..++|.++.. .+        
T Consensus         8 ~~~~iGIDLGTtns~i~~~~~g---ii~~~------PSvVa~~~~~~~i~~vG~~Ak~~~~~~p~~~~~-~~--------   69 (336)
T PRK13930          8 FSKDIGIDLGTANTLVYVKGKG---IVLNE------PSVVAVDKKTGKVLAVGEEAKAMLGRTPGNIEA-IR--------   69 (336)
T ss_pred             HCCEEEEECCHHCEEEEEECCC---EECCC------CEEEEEECCCCEEEEHHHHHHHHCCCCCCCEEE-EE--------
T ss_conf             4576699986353899991898---88988------859999879998984389999850489775699-99--------


Q ss_pred             CHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             26787652019869997599827999579587199999999999999999983884733698537788740257886344
Q gi|255764494|r   79 DSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAG  158 (652)
Q Consensus        79 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa  158 (652)
                                      +..+         ....+.++++.+|++|+..++..++....++|||||+||++.||+|+++||
T Consensus        70 ----------------pl~~---------g~i~d~e~~~~~l~~l~~~~~~~~~~~~~~~VItVPa~f~~~qR~a~~~Aa  124 (336)
T PRK13930         70 ----------------PLKD---------GVIADFEATEAMLRYFIKKARGRSSFGRPRIVICVPSGITEVERRAVREAA  124 (336)
T ss_pred             ----------------ECCC---------CEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf             ----------------6789---------815488999999999999998645889981999939999999999999999


Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             21122222222102478888603445655079987244114543101023146542013322455213447665536787
Q gi|255764494|r  159 RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT  238 (652)
Q Consensus       159 ~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~  238 (652)
                      ++|||++++|||||||||++||++...+..+||||||||||||||+++.+     +.+.++.+|||+|||++|++|+.++
T Consensus       125 ~~AGl~~v~li~EPtAAAl~~gl~~~~~~~~lVvDlGGGT~Dvsvl~~~~-----i~~~~~~~lGG~d~D~~i~~~i~~~  199 (336)
T PRK13930        125 EHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGG-----IVYSESIRVAGDEMDEAIIQYVRRK  199 (336)
T ss_pred             HHCCCCEEEEECCHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEEECC-----EEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             97699879985526999987189846786179999389854677887043-----4774460446265899999999986


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE--EECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCC
Q ss_conf             64201343024478999999999988541155650358--6304434678872126873110000123420000110011
Q gi|255764494|r  239 FKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEI--NLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCK  316 (652)
Q Consensus       239 ~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i--~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~  316 (652)
                          |++.+..         ..||++|+.||+......  .++....+...|.+.++.|||++|+++++++++++.++++
T Consensus       200 ----~~~~i~~---------~~aE~~K~~l~~~~~~~~~~~~~v~g~d~~~g~~~~~~it~~~~~~~i~~~~~~i~~~i~  266 (336)
T PRK13930        200 ----YNLLIGE---------RTAERIKIEIGSAYPLDEELSMEVRGRDLVTGLPRTIEISSEEIREALAEPLQQIVEAIK  266 (336)
T ss_pred             ----HCCCCCH---------HHHHHHHHHHHHCCCCCCCCCCEEECEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf             ----0633288---------999999999730544542433212110236798623776499999999999999999899


Q ss_pred             CCCHHCC--CCCEEEEE-EEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf             1101013--56311014-6630785305677886541011111113565310111110002234
Q gi|255764494|r  317 KCLQDAG--LSPSDIDE-VVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVL  377 (652)
Q Consensus       317 ~~L~~a~--~~~~~I~~-V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~l  377 (652)
                      ++|+++.  +..+.++. |+|||||||||.|+++|++.||.++..++|||+|||+|||+++..+
T Consensus       267 ~~L~~~~~el~~Di~~~gIiLvGGsSriP~i~~~l~e~~g~~v~~~~~P~~aVA~GAAi~~~~~  330 (336)
T PRK13930        267 SVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL  330 (336)
T ss_pred             HHHHCCCHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCH
T ss_conf             8875067232121126839998774551479999999978398889887779999999998587


No 21 
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00  E-value=0  Score=479.66  Aligned_cols=316  Identities=24%  Similarity=0.346  Sum_probs=261.5

Q ss_pred             CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCC--EEECHHHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf             98169980486606999998995599756898625627999948998--9966789863330835110020675498687
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGE--RLVGQPAKRQAVTNPSNTIFAAKRLIGRRFN   78 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~--~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~   78 (652)
                      ||+.||||||||||+|+....|   ++.|+      ||+|+|..++.  ..+|..|+.+..++|.++..-          
T Consensus         3 ~~~~iGIDLGTtns~v~~~~~g---ii~~e------PSvva~d~~~~~~~avG~~Ak~~~~~~p~~i~~~----------   63 (335)
T PRK13929          3 QSTEIGIDLGTANILVYSKNKG---IILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV----------   63 (335)
T ss_pred             CCCEEEEECCHHHEEEEECCCC---EECCC------CCEEEEECCCCEEEEECHHHHHHHCCCCCCEEEE----------
T ss_conf             8881689875352899987899---88847------8689997799729996499999715697768999----------


Q ss_pred             CHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCE--EEEEECCCCCCCHHHHHHH
Q ss_conf             26787652019869997599827999579587199999999999999999983884733--6985377887402578863
Q gi|255764494|r   79 DSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSK--AVITVPAYFNDAQRQATKD  156 (652)
Q Consensus        79 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~--~VitVP~~f~~~qR~a~~~  156 (652)
                                              ....+..+++.|+++.+|+++++.++.++|..+.+  +|||||+||++.||+|+++
T Consensus        64 ------------------------~p~~~g~i~d~e~s~~iL~~l~~~a~~~~g~~~~~p~~VItVPa~ft~~qR~A~~~  119 (335)
T PRK13929         64 ------------------------RPMKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPTVVVCTPSGSTAVERRAISD  119 (335)
T ss_pred             ------------------------EECCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf             ------------------------85789634566767999999999999851876688878999299999999999999


Q ss_pred             HHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             44211222222221024788886034456550799872441145431010231465420133224552134476655367
Q gi|255764494|r  157 AGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHIC  236 (652)
Q Consensus       157 Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~  236 (652)
                      ||++||+++++||||||||||+||++..++..+||||+||||||+||+++.+     +.+.++.+|||+|||++|++|+.
T Consensus       120 Aa~~AG~~~v~li~EPtAAAlg~gl~~~~~~~~lV~DlGGGT~Dvsvl~~~g-----v~~~~~~~lGG~d~D~aI~~~v~  194 (335)
T PRK13929        120 AVKNCGAKQVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGG-----VVSCHSIRIGGDQLDEDIVSFVR  194 (335)
T ss_pred             HHHHCCCEEEEEECCHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECC-----EEEECCCCCCCHHHHHHHHHHHH
T ss_conf             9997598089984406899987798667785299999479725899999678-----68527846667668899999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC--EEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHC
Q ss_conf             876420134302447899999999998854115565--035863044346788721268731100001234200001100
Q gi|255764494|r  237 DTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTS--QTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEP  314 (652)
Q Consensus       237 ~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~--~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~  314 (652)
                      ++|....+    .         ..+|++|+.|+...  .....++....+...|...++.+++++|+.+|++++.++.++
T Consensus       195 ~~~~~~ig----~---------~~ae~~k~~~~~~~~~~~~~~~~v~g~~~~~g~p~~~~l~~~~~~~~~~~~~~~i~~~  261 (335)
T PRK13929        195 KKYNLLIG----E---------RTAEQVKIEIGYALIDHETETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEA  261 (335)
T ss_pred             HHHCHHCC----H---------HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHH
T ss_conf             86351108----9---------9999999996020022677651777653468987039974899999999999999999


Q ss_pred             CCCCCHHC--CCCCEEEE-EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf             11110101--35631101-46630785305677886541011111113565310111110002234
Q gi|255764494|r  315 CKKCLQDA--GLSPSDID-EVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVL  377 (652)
Q Consensus       315 i~~~L~~a--~~~~~~I~-~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~l  377 (652)
                      ++++|+++  .+..+.++ .|+||||+||+|.|+++|++.||.++..++|||||||+|||+++.++
T Consensus       262 i~~~L~~~~pel~~di~d~gIvLvGG~srip~i~~~l~~~~~~~v~~~~nP~~~Va~GAa~~~~~i  327 (335)
T PRK13929        262 IRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSQEIVVPVHVAANPLESVAIGTGRSLEVI  327 (335)
T ss_pred             HHHHHHHCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             999998388433254327829997740432679999999978198779886767999899999769


No 22 
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00  E-value=0  Score=478.01  Aligned_cols=313  Identities=23%  Similarity=0.352  Sum_probs=253.1

Q ss_pred             CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCC--EEECHHHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf             98169980486606999998995599756898625627999948998--9966789863330835110020675498687
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGE--RLVGQPAKRQAVTNPSNTIFAAKRLIGRRFN   78 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~--~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~   78 (652)
                      |++.||||||||||+|.  ..++. ++.|+      ||+|+|..++.  ..||+.|+.+..++|.++.. +++       
T Consensus         2 ~~~~iGIDLGTtn~~v~--~~~~~-iv~~e------PSvVa~~~~~~~~l~vG~~Ak~~~~~~p~~~~~-~~p-------   64 (325)
T PRK13928          2 FGRDIGIDLGTANVLVY--VKGKG-IVLNE------PSVVAIDRNTNKVLAVGEEARRMVGRTPGNIVA-IRP-------   64 (325)
T ss_pred             CCCEEEEECCHHCEEEE--ECCCC-EECCC------CEEEEEECCCCEEEEEHHHHHHHCCCCCCCEEE-EEE-------
T ss_conf             87744899860258999--87998-79878------849999889997998659999854479987899-995-------


Q ss_pred             CHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             26787652019869997599827999579587199999999999999999983884733698537788740257886344
Q gi|255764494|r   79 DSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAG  158 (652)
Q Consensus        79 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa  158 (652)
                                                .....+++.++++.+|++++..+....+....++|||||+||++.||+||++||
T Consensus        65 --------------------------l~~g~i~d~e~~~~~L~~l~~~~~~~~~~~~~~vVItVPa~f~~~qR~At~~Aa  118 (325)
T PRK13928         65 --------------------------LRDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPSGITSVEKRAVRDAA  118 (325)
T ss_pred             --------------------------CCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             --------------------------689766367888998999999973023579981999979799999999999999


Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             21122222222102478888603445655079987244114543101023146542013322455213447665536787
Q gi|255764494|r  159 RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT  238 (652)
Q Consensus       159 ~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~  238 (652)
                      ++||+++++|||||||||++||++...+..+||||||||||||||+++.+     +.+.++.+|||+|||++|++|+.++
T Consensus       119 ~~AGl~~v~li~EPtAAAl~~Gl~~~~~~~~lV~DlGGGT~Dvsvl~~g~-----iv~~~~~~lGG~dfD~~I~~~l~~~  193 (325)
T PRK13928        119 EQAGAKKVYLIEEPLAAAIGAGLDIFQPSGNMVVDIGGGTTDIAVLSLGG-----IVTSSSIKVAGDKFDEAIIKYIRKK  193 (325)
T ss_pred             HHCCCCEEEEECCHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECC-----EEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             98699879996556999998487756887359999589837899999788-----5886772226805688999999986


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC----CEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHC
Q ss_conf             642013430244789999999999885411556----5035863044346788721268731100001234200001100
Q gi|255764494|r  239 FKKENGIDLKQDTLALQRLKEAAEKAKIELSST----SQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEP  314 (652)
Q Consensus       239 ~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~----~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~  314 (652)
                      |+..    +.         .+.+|++|+.|+..    .+..+.+.  ..+...|...++.+||++|+++++++++++..+
T Consensus       194 ~~~~----i~---------~~~aE~~K~~l~~~~~~~~~~~~~v~--g~~~~~g~p~~~~it~~~~~~~~~~~~~~i~~~  258 (325)
T PRK13928        194 YKLM----IG---------ERTAEEIKIKIGTAFPGAREEEMEIR--GRDLVTGLPRTITVTSEEIREALKEPVSAIVQA  258 (325)
T ss_pred             HHHH----HH---------HHHHHHHHHHHHHHHHCCCCCEEEEE--ECCCCCCCCCEEEECHHHHHHHHHHHHHHHHHH
T ss_conf             3110----12---------98999999998754315557626885--002356887439984699999999999999999


Q ss_pred             CCCCCHHC--CCCCEEEEE-EEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             11110101--356311014-663078530567788654101111111356531011111000223
Q gi|255764494|r  315 CKKCLQDA--GLSPSDIDE-VVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGV  376 (652)
Q Consensus       315 i~~~L~~a--~~~~~~I~~-V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~  376 (652)
                      ++++|+++  .+..+.++. |+|||||||||.|+++|+++||+++..+.|||+|||+|||+++..
T Consensus       259 i~~~Le~~~~el~~di~d~GIvLvGGssrip~v~~~l~~~~g~~~~~~~~P~~~Va~Gaai~~~~  323 (325)
T PRK13928        259 VKSVLERTPPELSADIIDKGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLEN  323 (325)
T ss_pred             HHHHHHHCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             99999728554412112694999875133267999999997839877898777999999999852


No 23 
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00  E-value=0  Score=441.74  Aligned_cols=312  Identities=24%  Similarity=0.378  Sum_probs=239.4

Q ss_pred             CCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCC---EEECHHHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf             98169980486606999998995599756898625627999948998---996678986333083511002067549868
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGE---RLVGQPAKRQAVTNPSNTIFAAKRLIGRRF   77 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~---~~vG~~A~~~~~~~p~~ti~~~KrliG~~~   77 (652)
                      ||+.||||||||||+|++. +.+  ++.|+      ||+|+|.+++.   ..||+.|+.+..+.|.++. .+ |      
T Consensus         7 ~~~~iGIDLGTtns~v~~~-~~g--iv~~e------PSvVa~~~~~~~~i~aVG~~Ak~~~gr~p~~i~-~i-r------   69 (338)
T PRK13927          7 FSNDLGIDLGTANTLIYVK-GKG--IVLNE------PSVVAIRQDTGGKVLAVGSEAKQMLGRTPGNIV-AI-R------   69 (338)
T ss_pred             HCCEEEEECCHHCEEEEEC-CCC--EECCC------CCEEEEECCCCEEEEHHHHHHHHHCCCCCCCEE-EE-E------
T ss_conf             3662289766340899988-998--78568------808999838984876127999985458967279-99-8------


Q ss_pred             CCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHH--HHHHCCCCCEEEEEECCCCCCCHHHHHH
Q ss_conf             72678765201986999759982799957958719999999999999999--9983884733698537788740257886
Q gi|255764494|r   78 NDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETA--ESFLGETVSKAVITVPAYFNDAQRQATK  155 (652)
Q Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~a--e~~l~~~v~~~VitVP~~f~~~qR~a~~  155 (652)
                                       +..+|.         .+.-+++..+|+++...+  +..+.....++|||||+||++.||+|++
T Consensus        70 -----------------pl~~Gv---------i~d~~~~~~~l~~li~~~~~~~~~~~~~~~vVItVPa~ft~~qR~A~~  123 (338)
T PRK13927         70 -----------------PMKDGV---------IADFDVTEKMLKYFIKKVHKRRGFFRPSPRVVVCVPSGSTQVERRAVR  123 (338)
T ss_pred             -----------------ECCCCC---------CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf             -----------------767881---------045477899999999999740243479996999619999889999999


Q ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf             34421122222222102478888603445655079987244114543101023146542013322455213447665536
Q gi|255764494|r  156 DAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHI  235 (652)
Q Consensus       156 ~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~  235 (652)
                      +||++||+++++||+||||||++||++..++..+||||+||||||+||+++.+ .    .+.++.+|||+|||++|++|+
T Consensus       124 ~Aa~~AG~~~v~li~EP~AAAig~Gl~~~~~~g~lVvDlGGGT~Dvsvislgg-i----v~~~~~~lGG~d~D~aI~~~v  198 (338)
T PRK13927        124 ESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGG-I----VYSKSVRVGGDKFDEAIINYV  198 (338)
T ss_pred             HHHHHCCCCEEEEECCHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCC-E----EEECCCCCHHHHHHHHHHHHH
T ss_conf             99997699869974437999987288857886369999589854676787288-7----860770203245889999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC----EEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHH
Q ss_conf             7876420134302447899999999998854115565----035863044346788721268731100001234200001
Q gi|255764494|r  236 CDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTS----QTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKT  311 (652)
Q Consensus       236 ~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~----~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~  311 (652)
                      .++    |++.+..         ..||++|+.|++..    ...+.+.  ..+...|...++.||+++|.+++.++++++
T Consensus       199 ~~~----~~l~i~~---------~tAE~iK~~l~sa~~~~~~~~~~v~--G~~~~~g~p~~~~it~~ei~~ai~~~l~~i  263 (338)
T PRK13927        199 RRN----YNLLIGE---------RTAERIKIEIGSAYPGDEVEEMEVR--GRDLVTGLPKTITISSNEIREALQEPLSAI  263 (338)
T ss_pred             HHH----HCCCCCH---------HHHHHHHHHHHCCCCCCCCCEEEEE--CCCCCCCCCCEEEECHHHHHHHHHHHHHHH
T ss_conf             987----3744389---------9999999997304777777426984--543356888237525899999999999999


Q ss_pred             HHCCCCCCHHCCCC-CEEE-E-EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             10011110101356-3110-1-466307853056778865410111111135653101111100022
Q gi|255764494|r  312 VEPCKKCLQDAGLS-PSDI-D-EVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAG  375 (652)
Q Consensus       312 ~~~i~~~L~~a~~~-~~~I-~-~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~  375 (652)
                      .+.|+++|+++.-. ..|| + .|+|||||||+|.|+++|+++||.++....||++|||.||+++..
T Consensus       264 ~~~i~~~Le~~~pel~~Di~~~GIvLvGGss~ip~v~~~i~~~~g~~v~~~~~P~~~Va~GA~~~le  330 (338)
T PRK13927        264 VEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALE  330 (338)
T ss_pred             HHHHHHHHHHCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             9999999984886654333128789987401426699999999784970179867899998999986


No 24 
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family; InterPro: IPR004753   Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis . Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor .    The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography . It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes .; GO: 0000902 cell morphogenesis.
Probab=99.98  E-value=9.8e-32  Score=259.14  Aligned_cols=310  Identities=26%  Similarity=0.389  Sum_probs=229.9

Q ss_pred             CCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCC-----C--EEECHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf             816998048660699999899559975689862562799994899-----8--996678986333083511002067549
Q gi|255764494|r    2 SKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEG-----E--RLVGQPAKRQAVTNPSNTIFAAKRLIG   74 (652)
Q Consensus         2 s~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~-----~--~~vG~~A~~~~~~~p~~ti~~~KrliG   74 (652)
                      |.=|||||||-||.| |+++.+  ||+||      ||+|+...+.     .  .-||.+||.++-+.|.|.. .+     
T Consensus         2 S~d~gIDLGTANTlV-yVkg~G--IVl~E------PSVVA~~~~~f~~~~~~v~AVG~~AK~MLGkTP~nI~-Ai-----   66 (337)
T TIGR00904         2 SSDIGIDLGTANTLV-YVKGRG--IVLNE------PSVVAIRTDRFDAKTKSVLAVGHEAKEMLGKTPGNIV-AI-----   66 (337)
T ss_pred             CCCCCHHHCCCCEEE-EECCCE--EEEEC------CCEEEEEECCCCCCCCEEEEEEHHHHHHCCCCCCCCE-EE-----
T ss_conf             665200110303468-883502--79517------8458886043057542168850046530287988726-86-----


Q ss_pred             CCCCCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHH---HHCCCCCEEEEEECCCCCCCHH
Q ss_conf             8687267876520198699975998279995795871999999999999999999---8388473369853778874025
Q gi|255764494|r   75 RRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAES---FLGETVSKAVITVPAYFNDAQR  151 (652)
Q Consensus        75 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~---~l~~~v~~~VitVP~~f~~~qR  151 (652)
                                         .+.++|-..      .   =+++...|+|..+.+-.   ++. |--.+||.||.-.|+.+|
T Consensus        67 -------------------RPlKDGVIA------D---f~~Te~MlkYFI~~v~~rk~~~~-P~P~~~icVP~GiT~VEr  117 (337)
T TIGR00904        67 -------------------RPLKDGVIA------D---FEVTEKMLKYFIKKVHSRKSFFR-PKPRIVICVPSGITPVER  117 (337)
T ss_pred             -------------------CCCCCCCCC------C---HHHHHHHHHHHHHHHHCCCCCCC-CCCEEEEEECCCCCHHHH
T ss_conf             -------------------468885124------7---68999999999999856775368-987699985379986678


Q ss_pred             HHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf             78863442112222222210247888860344565507998724411454310102314654201332245521344766
Q gi|255764494|r  152 QATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCL  231 (652)
Q Consensus       152 ~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l  231 (652)
                      +|+.+||.-||=.-+.||.||.|||+.=+|+-.++.--||+|+|||||+|+|+++.+=+   .+ . --..|||.||++|
T Consensus       118 RAV~esA~~AGAREV~lIEEPmAAAIGA~LPV~EP~GsMvvDIGGGTTEvaVISLgGiV---~S-~-SiRvgGDefDeaI  192 (337)
T TIGR00904       118 RAVKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIV---VS-R-SIRVGGDEFDEAI  192 (337)
T ss_pred             HHHHHHHHHCCCEEEEEECCCHHHHHCCCCCCCCCCCCEEEECCCCCEEEEEEECCCEE---EE-E-EEEECCCHHHHHH
T ss_conf             99999985079707886234137863587380467668789848872230021105456---76-5-4443143011688


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCE---EEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf             553678764201343024478999999999988541155-650---3586304434678872126873110000123420
Q gi|255764494|r  232 VEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSS-TSQ---TEINLPFISANSAGAQHLNMKLTRAQFERLVNHL  307 (652)
Q Consensus       232 ~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~-~~~---~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l  307 (652)
                      .+|+...    |++=+-+-         .||+.|+.+-+ ...   -.-.+|--..|...|..-+.+|+-.+.-+..++-
T Consensus       193 I~YiRr~----ynllIGe~---------TAE~IKieIGsA~~~~~~e~~~mEv~GrD~~~GlPr~~~i~s~ev~EaL~ep  259 (337)
T TIGR00904       193 INYIRRT----YNLLIGER---------TAERIKIEIGSAYPEENDEERKMEVRGRDLVTGLPRTIEINSVEVREALQEP  259 (337)
T ss_pred             HHHHHHH----CCCCCCCH---------HHHHHHHHHCCEECCCCCCEEEEEEECCHHHCCCCCEEEECHHHHHHHHHHH
T ss_conf             9988864----38556712---------3888745444310167886003555011321127720577628999988736


Q ss_pred             HHHHHHCCCCCCHHCCCCC-EEEE--EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             0001100111101013563-1101--4663078530567788654101111111356531011111000
Q gi|255764494|r  308 IQKTVEPCKKCLQDAGLSP-SDID--EVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQ  373 (652)
Q Consensus       308 ~~~~~~~i~~~L~~a~~~~-~~I~--~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~  373 (652)
                      ++.+.+.|+.+|++..=.. .||-  +++|.||++.+-.+-+.|++..|-++..--||..|||+|+...
T Consensus       260 v~~IV~aVk~tLE~tPPELA~DIveRGiVLTGGGaLLrnLDk~lS~eTg~PV~~Ad~PL~cVA~G~G~~  328 (337)
T TIGR00904       260 VNQIVEAVKSTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVALGTGKA  328 (337)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHCCEEEECCHHHHHCCCHHHHHHCCCCEEECCCCHHHHHHHHHHH
T ss_conf             889999999875168870465776469376263054521015877734863688687133587654289


No 25 
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.96  E-value=3.7e-27  Score=224.42  Aligned_cols=315  Identities=25%  Similarity=0.373  Sum_probs=227.6

Q ss_pred             CCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECC--CC--EEECHHHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf             81699804866069999989955997568986256279999489--98--996678986333083511002067549868
Q gi|255764494|r    2 SKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDE--GE--RLVGQPAKRQAVTNPSNTIFAAKRLIGRRF   77 (652)
Q Consensus         2 s~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~--~~--~~vG~~A~~~~~~~p~~ti~~~KrliG~~~   77 (652)
                      |..+||||||-|+.|.+- +++  |++|+      ||+|++..+  ..  ..+|.+|+.+.-+.|.|...          
T Consensus         6 s~diGIDLGTanTlV~~k-~kg--IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~a----------   66 (342)
T COG1077           6 SNDIGIDLGTANTLVYVK-GKG--IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVA----------   66 (342)
T ss_pred             CCCCEEEECCCCEEEEEC-CCE--EEECC------CEEEEEEECCCCCEEEEEHHHHHHHHCCCCCCCEE----------
T ss_conf             565225324672699971-863--78457------62899950599725998508889872559777168----------


Q ss_pred             CCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCHHHHHHH
Q ss_conf             7267876520198699975998279995795871999999999999999999838-847336985377887402578863
Q gi|255764494|r   78 NDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLG-ETVSKAVITVPAYFNDAQRQATKD  156 (652)
Q Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~-~~v~~~VitVP~~f~~~qR~a~~~  156 (652)
                                     +.+..+|..         .--+++..+|+++.+..-..-+ ...-.++|.||..-++.+|+|+++
T Consensus        67 ---------------iRPmkdGVI---------Ad~~~te~ml~~fi~~~~~~~~~~~~prI~i~vP~g~T~VErrAi~e  122 (342)
T COG1077          67 ---------------IRPMKDGVI---------ADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKE  122 (342)
T ss_pred             ---------------EEECCCCEE---------ECHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf             ---------------724677676---------43899999999999974357787788838997458865999999999


Q ss_pred             HHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             44211222222221024788886034456550799872441145431010231465420133224552134476655367
Q gi|255764494|r  157 AGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHIC  236 (652)
Q Consensus       157 Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~  236 (652)
                      |++-||..-+-++.||.|||+.-+++-.++.--||+|+||||+|+.|+++.+=    ..... -.+||+.||++|++|+.
T Consensus       123 a~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggi----v~~~S-irv~GD~~De~Ii~yvr  197 (342)
T COG1077         123 AAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGI----VSSSS-VRVGGDKMDEAIIVYVR  197 (342)
T ss_pred             HHHHCCCCEEEEECCHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEEEECCE----EEEEE-EEEECCHHHHHHHHHHH
T ss_conf             99856475589724477887648970447778789993898366799996388----98756-99834224588999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-C--EE-EEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHH
Q ss_conf             87642013430244789999999999885411556-5--03-58630443467887212687311000012342000011
Q gi|255764494|r  237 DTFKKENGIDLKQDTLALQRLKEAAEKAKIELSST-S--QT-EINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTV  312 (652)
Q Consensus       237 ~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~-~--~~-~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~  312 (652)
                      ++    |++-+.+.         .+|++|+..-.. .  .. ...++--..+...|..-.++++-++..+..++.++++.
T Consensus       198 ~~----~nl~IGe~---------taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~e~v~~Iv  264 (342)
T COG1077         198 KK----YNLLIGER---------TAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIV  264 (342)
T ss_pred             HH----HCEEECHH---------HHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf             87----48103588---------999999873614466677640676872240468981588658999999999999999


Q ss_pred             HCCCCCCHHCC--CCCEEEEE-EEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf             00111101013--56311014-6630785305677886541011111113565310111110002234
Q gi|255764494|r  313 EPCKKCLQDAG--LSPSDIDE-VVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVL  377 (652)
Q Consensus       313 ~~i~~~L~~a~--~~~~~I~~-V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~l  377 (652)
                      +.++.+|+...  |.++=++. ++|+||++.+-.+.+.+++..+.++...-+|..|||.|+......+
T Consensus       265 eair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~  332 (342)
T COG1077         265 EAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEAL  332 (342)
T ss_pred             HHHHHHHHHCCCHHCCCHHHCCEEEECCHHHHCCCHHHHHHCCCCEEEECCCHHHHHHHCCCHHHHHH
T ss_conf             99999986489210020665752894665875073076786059628988875889875233666666


No 26 
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.76  E-value=5.7e-17  Score=147.26  Aligned_cols=321  Identities=17%  Similarity=0.247  Sum_probs=186.7

Q ss_pred             EEEEECCCCEEEEEEEE---CCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf             69980486606999998---995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMD---GKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS   80 (652)
Q Consensus         4 viGIDlGtt~s~va~~~---~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~   80 (652)
                      ++|||+||+..++.+.+   +|.+.|+--    -..||- ++ .+| .++--++..+..   +..+...-+..|....+.
T Consensus        10 iv~lDIGsskI~~lv~~~~~~g~i~IiG~----g~~~S~-Gi-~kG-~I~di~~~~~sI---~~av~~aE~~ag~~I~~v   79 (420)
T PRK09472         10 VVGLEIGTAKVAALVGEVLPDGMVNIIGV----GSCPSR-GM-DKG-GVNDLESVVKCV---QRAIDQAELMADCQISSV   79 (420)
T ss_pred             EEEEECCCCEEEEEEEEECCCCCEEEEEE----EEECCC-CC-CCC-EEECHHHHHHHH---HHHHHHHHHHHCCCCCEE
T ss_conf             99998677859999999858997899999----984258-73-187-897599999999---999999999719933369


Q ss_pred             HHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC-C-----------
Q ss_conf             7876520198699975998279995795871999999999999999999838847336985377887-4-----------
Q gi|255764494|r   81 TVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFN-D-----------  148 (652)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~-~-----------  148 (652)
                      .+.-.-.+     +...+....+.+.++..+.++     +..+.+.|....-.+-..++=.+|..|. |           
T Consensus        80 ~v~isg~~-----i~s~~~~~~~~i~~~eI~~~D-----i~~~~~~a~~~~~~~~~~ilh~ip~~y~iD~~~~i~nPiGm  149 (420)
T PRK09472         80 YLALSGKH-----ISCQNEIGMVPISEEEVTQED-----VENVVHTAKSVRVRDEHRILHVIPQEYAIDYQEGIKNPVGL  149 (420)
T ss_pred             EEEECCCC-----EEEEEEEEEEECCCCEECHHH-----HHHHHHHHHHCCCCCCCEEEEEECCEEEEECCCCCCCCCCC
T ss_conf             99985775-----268986668956867763999-----99999986630379884489995517998476456897678


Q ss_pred             ----------------CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-CCCEEEEEEECCCEEEEEEEEECCCEE
Q ss_conf             ----------------025788634421122222222102478888603445-655079987244114543101023146
Q gi|255764494|r  149 ----------------AQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKK-DARTVIVFDFGGGTFDVSLLEMGDGVF  211 (652)
Q Consensus       149 ----------------~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~-~~~~vlV~D~Gggt~dvsi~~~~~~~~  211 (652)
                                      ...+-+..+.+.|||++..++.+|.|+|.+ .+... .+..++++||||||+|++|  |.+|.+
T Consensus       150 ~g~~Le~~~~iI~~~~~~~~Nl~~~v~~~gl~v~~~v~~~lAsa~a-vLt~~Eke~Gv~lIDiG~gtT~iav--f~~g~l  226 (420)
T PRK09472        150 SGVRMQAKVHLITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYA-VLTEDERELGVCVVDIGGGTMDIAV--YTGGAL  226 (420)
T ss_pred             CCCEEEEEEEEEEEEHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHH-CCCHHHHHHCCEEEEECCCEEEEEE--EECCEE
T ss_conf             7462453579998507899999999997496420144517777652-4899899619589980898388999--979989


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC----C--CCEEEEEECCCCCCC
Q ss_conf             5420133224552134476655367876420134302447899999999998854115----5--650358630443467
Q gi|255764494|r  212 EVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELS----S--TSQTEINLPFISANS  285 (652)
Q Consensus       212 ~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS----~--~~~~~i~i~~~~~~~  285 (652)
                      .-.+   --.+||++|++-|+.-|.        +           -+..||++|+...    .  ...-.+.++.+... 
T Consensus       227 ~~~~---~ipiGG~~IT~DIa~~L~--------i-----------~~~~AE~lK~~~G~a~~~~~~~~e~i~i~~~~~~-  283 (420)
T PRK09472        227 RHTK---VIPYAGNVVTSDIAYAFG--------T-----------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR-  283 (420)
T ss_pred             EEEE---EECCHHHHHHHHHHHHHC--------C-----------CHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCC-
T ss_conf             9997---532428899999998849--------8-----------9999999999839555454787766873678998-


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCC-------HHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             8872126873110000123420000110011110-------101356311014663078530567788654101111111
Q gi|255764494|r  286 AGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCL-------QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSK  358 (652)
Q Consensus       286 ~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L-------~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~  358 (652)
                          . ...++|..+.+++++-++.+++.|++.+       +++++...--..|+|+||+|++|.+.++.++.|+.++..
T Consensus       284 ----~-~~~i~~~~l~~II~aR~eEIl~~v~~~i~~~~~~l~~~g~~~~l~~GiVLTGG~s~l~Gi~ela~~if~~~VRi  358 (420)
T PRK09472        284 ----P-PRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRI  358 (420)
T ss_pred             ----C-CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHCCCHHHHHHHHHCCCCEE
T ss_conf             ----7-65074999999999999999999999999988787765630025875899791540768899999996898189


Q ss_pred             ------------CCCCCCHHHHHHHHCCC
Q ss_conf             ------------35653101111100022
Q gi|255764494|r  359 ------------GVNPDEVVAMGAAIQAG  375 (652)
Q Consensus       359 ------------~~npdeaVa~GAA~~a~  375 (652)
                                  --||..|.|.|-.+||+
T Consensus       359 g~P~~~~gl~~~~~~P~~at~~GLl~y~~  387 (420)
T PRK09472        359 GAPLNITGLTDYAQEPYYSTAVGLLHYGK  387 (420)
T ss_pred             ECCCCCCCCHHHCCCCHHHHHHHHHHHHH
T ss_conf             65876688544337949899999999987


No 27 
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.72  E-value=1.3e-15  Score=137.01  Aligned_cols=300  Identities=24%  Similarity=0.387  Sum_probs=187.1

Q ss_pred             CEEEEECCCCEEEEEE--EECC-EEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf             1699804866069999--9899-559975689862562799994899899667898633308351100206754986872
Q gi|255764494|r    3 KVIGIDLGTTNSCVAI--MDGK-NVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFND   79 (652)
Q Consensus         3 ~viGIDlGtt~s~va~--~~~~-~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d   79 (652)
                      -++|+|+||+..++.+  ..++ ...++--  |  ..||-- . ++| ..+--.|..+..   +.++....++-|...++
T Consensus         7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~--g--~~~SrG-i-k~G-~I~di~~~~~sI---~~av~~AE~mag~~i~~   76 (418)
T COG0849           7 LIVGLDIGTSKVKALVGELRPDGRLNIIGV--G--SHPSRG-I-KKG-VIVDLDAAAQSI---KKAVEAAERMAGCEIKS   76 (418)
T ss_pred             EEEEEECCCCEEEEEEEEECCCCEEEEEEE--E--CCCCCC-C-CCC-EEECHHHHHHHH---HHHHHHHHHHCCCCCCE
T ss_conf             499997267479999999847986999975--5--166766-1-364-177589999999---99999999862997126


Q ss_pred             HHHHHHHHCCCEEEEECCCCEEEEEECC-EEECHHHHHHHHHHHHHHHHHHHHCCCCCEE--------------------
Q ss_conf             6787652019869997599827999579-5871999999999999999999838847336--------------------
Q gi|255764494|r   80 STVAKDASLVPFKIVEGKGGDAWIEAQG-KQYSPSQISAIVLQKMKETAESFLGETVSKA--------------------  138 (652)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~peei~a~iL~~lk~~ae~~l~~~v~~~--------------------  138 (652)
                      ..+.-.-.+     ....+....+.+.+ +..+.+++-     ++.+.|......+-..+                    
T Consensus        77 v~vs~sG~~-----i~s~~~~g~v~i~~~~eIt~~DI~-----rvl~~A~~~~~~~~~~ilh~~p~~y~vD~~~~I~dP~  146 (418)
T COG0849          77 VIVSLSGNH-----IKSQNVNGEVSISEEKEITQEDIE-----RVLEAAKAVAIPPEREILHVIPQEYIVDGQEGIKDPL  146 (418)
T ss_pred             EEEEECCCE-----EEEEEEEEEEECCCCCCCCHHHHH-----HHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCC
T ss_conf             999932560-----678766899975987704899999-----9999987641688816889951388997856668953


Q ss_pred             ------------EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC-CCEEEEEEECCCEEEEEEEE
Q ss_conf             ------------98537788740257886344211222222221024788886034456-55079987244114543101
Q gi|255764494|r  139 ------------VITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKD-ARTVIVFDFGGGTFDVSLLE  205 (652)
Q Consensus       139 ------------VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~-~~~vlV~D~Gggt~dvsi~~  205 (652)
                                  ++|+|..+-    +-+..+.+.|||++..++-+|-|+|.+ .+...+ +-.++++||||||+|+++  
T Consensus       147 gm~G~rL~v~vhvit~~~~~~----~Nl~k~v~r~gl~v~~i~l~plAsa~a-~L~~dEkelGv~lIDiG~GTTdIai--  219 (418)
T COG0849         147 GMSGVRLEVEVHVITGPKNIL----ENLEKCVERAGLKVDNIVLEPLASALA-VLTEDEKELGVALIDIGGGTTDIAI--  219 (418)
T ss_pred             CCCCCEEEEEEEEEECCHHHH----HHHHHHHHHHCCCEEEEEEEHHHHHHH-CCCCCCHHCCEEEEEECCCCEEEEE--
T ss_conf             465336999999998144899----999999999499740189744544050-0682447409399994899179999--


Q ss_pred             ECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC------CCEEEEEEC
Q ss_conf             02314654201332245521344766553678764201343024478999999999988541155------650358630
Q gi|255764494|r  206 MGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSS------TSQTEINLP  279 (652)
Q Consensus       206 ~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~------~~~~~i~i~  279 (652)
                      +.+|.+.-   .+--.+||++++..|+.-|.        .+           +..||+.|+..-+      .....++++
T Consensus       220 ~~~G~l~~---~~~ipvgG~~vT~DIa~~l~--------t~-----------~~~AE~iK~~~g~a~~~~~~~~~~i~v~  277 (418)
T COG0849         220 YKNGALRY---TGVIPVGGDHVTKDIAKGLK--------TP-----------FEEAERIKIKYGSALISLADDEETIEVP  277 (418)
T ss_pred             EECCEEEE---EEEEEECCCHHHHHHHHHHC--------CC-----------HHHHHHHHHHCCCCCCCCCCCCCEEECC
T ss_conf             98999999---70483073078899987759--------89-----------8899999997086455767876368635


Q ss_pred             CCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             443467887212687311000012342000011001111010135631101466307853056778865410111111
Q gi|255764494|r  280 FISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPS  357 (652)
Q Consensus       280 ~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~  357 (652)
                      ....      +...++||..+..++++.+..++..++..|.++++...-...|+|+||++.+|.+.+..++.|+.++.
T Consensus       278 ~vg~------~~~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vR  349 (418)
T COG0849         278 SVGS------DIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVR  349 (418)
T ss_pred             CCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCHHHHHHHHCCCCEE
T ss_conf             5787------65213009999999986379999999999987476545887399877443173689999986478608


No 28 
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein; InterPro: IPR013366    Salmonella typhimurium is capable of growth on ethanolamine as a sole source of carbon nitrogen and energy . During growth on this compound the cells form a multimolecular structure known as a metabolosome, which is similar to the carboxysome used by some photosynthetic bacteria to fix CO2, and is thought to contain the enzymes needed to metabolise this compound to acetyl-CoA. The metabolosome is not directly involved in the biochemistry of ethanolamine utilization - instead its role is thought to be to concentrate the enzymes involved in this process, while also protecting the cell from the build-up of toxic intermediates . The genes involved in growth on ethanolamine are encoded in a 17-gene operon known as the ethanolamine utilization (eut) operon. EutJ shows similarity to chaperonins and may play a role in assembly of the metabolosme , though it is not necessary for growth on this compound..
Probab=99.64  E-value=9.3e-16  Score=138.10  Aligned_cols=192  Identities=26%  Similarity=0.421  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCC
Q ss_conf             99999999999983884733698537788740257886344211222222221024788886034456550799872441
Q gi|255764494|r  118 IVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGG  197 (652)
Q Consensus       118 ~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Ggg  197 (652)
                      .+-++||+..|+.||-.++++-++||+--.+...+...+--+.|||+++..++||||||-.  |+-   ++=.|+|+|||
T Consensus        44 ~iV~rLK~~lE~klG~~lt~A~~A~PPGt~~~~~k~~vNV~EsAG~eV~~V~DEPTAAa~v--L~i---~nG~VVDvGGG  118 (240)
T TIGR02529        44 EIVKRLKDKLEKKLGIELTHAATAVPPGTEEGDVKVIVNVVESAGIEVLKVLDEPTAAAAV--LQI---KNGAVVDVGGG  118 (240)
T ss_pred             HHHHHHHHHHHHHHCCEEEECCEECCCCCCCCCEEEEEEEEECCCEEEEEEECCHHHHHHH--HCC---CCCEEEEECCC
T ss_conf             8999999888888094564131500897588975899998722561576651427899987--288---57279984788


Q ss_pred             EEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             14543101023146542013322455213447665536787642013430244789999999999885411556503586
Q gi|255764494|r  198 TFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEIN  277 (652)
Q Consensus       198 t~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~  277 (652)
                      ||=+||+  ++|...-  + -|.-=||.+|...|+-        .|++++.           +||..|+.=  ..+.++ 
T Consensus       119 TTGiSI~--K~GKViy--~-ADEpTGGtHm~LV~AG--------~ygi~~E-----------EAEe~K~~~--k~e~E~-  171 (240)
T TIGR02529       119 TTGISIL--KKGKVIY--S-ADEPTGGTHMSLVLAG--------AYGISFE-----------EAEEIKRDK--KKEEEV-  171 (240)
T ss_pred             CEEEEEE--ECCCEEE--E-EECCCCCCCEEEEEEE--------CCCCCHH-----------HHHHHHHCC--CCCEEE-
T ss_conf             0335799--7596899--8-2379998615678861--------2688888-----------988786305--884378-


Q ss_pred             ECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCC-CCCC
Q ss_conf             304434678872126873110000123420000110011110101356311014663078530567788654101-1111
Q gi|255764494|r  278 LPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFF-NKSP  356 (652)
Q Consensus       278 i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~f-g~~~  356 (652)
                                   |          ..+.|.++|+-+++++=|+..+     +..|.||||+|..+-+.+.+++.| |.++
T Consensus       172 -------------F----------~~v~PV~qKmA~Iv~~hi~~~~-----v~~~yLVGGac~~~~f~~~F~k~~Pg~~v  223 (240)
T TIGR02529       172 -------------F----------SVVKPVVQKMASIVKKHIEGQK-----VKDLYLVGGACSFSGFEDVFEKELPGLNV  223 (240)
T ss_pred             -------------E----------EEECCHHHHHHHHHHHHHCCCC-----CCEEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf             -------------8----------7604137778999999851188-----33689824400522467888764278762


Q ss_pred             CCCCCCCCHHHHH
Q ss_conf             1135653101111
Q gi|255764494|r  357 SKGVNPDEVVAMG  369 (652)
Q Consensus       357 ~~~~npdeaVa~G  369 (652)
                      .++.+|-..-=+|
T Consensus       224 ~~P~~P~~vTPLG  236 (240)
T TIGR02529       224 IKPAEPLYVTPLG  236 (240)
T ss_pred             CCCCCCEEECHHH
T ss_conf             1689873454133


No 29 
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.31  E-value=9.5e-11  Score=100.13  Aligned_cols=303  Identities=18%  Similarity=0.202  Sum_probs=159.3

Q ss_pred             EEEECCCCEEEEEEEECCEEE-EEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHH
Q ss_conf             998048660699999899559-9756898625627999948998996678986333083511002067549868726787
Q gi|255764494|r    5 IGIDLGTTNSCVAIMDGKNVR-VIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTVA   83 (652)
Q Consensus         5 iGIDlGtt~s~va~~~~~~~~-ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~   83 (652)
                      |=||+|+.++++++.....|. ++++.-|++.......-....+.++|.++......+.     .+              
T Consensus         2 vViD~GS~~~r~G~age~~P~~~ips~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~--------------   62 (371)
T cd00012           2 VVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGL-----EL--------------   62 (371)
T ss_pred             EEEECCCCEEEEEECCCCCCCEEECCEEEEECCCCCCCCCCCCCEEECCHHHHCCCCCC-----EE--------------
T ss_conf             89979998599877989998789857379988766556777786587626874678772-----68--------------


Q ss_pred             HHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCHHHHHHHHH-HH
Q ss_conf             652019869997599827999579587199999999999999999983884--733698537788740257886344-21
Q gi|255764494|r   84 KDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGET--VSKAVITVPAYFNDAQRQATKDAG-RI  160 (652)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~--v~~~VitVP~~f~~~qR~a~~~Aa-~~  160 (652)
                          .+|+     .+|        ..... +....++.++..   +++..+  -..+++|.|++++..+|+.+.+.. +-
T Consensus        63 ----~~p~-----~~G--------~i~d~-d~~e~~~~~~~~---~~l~~~~~~~~vll~ep~~~~~~~r~~~~e~lFE~  121 (371)
T cd00012          63 ----IYPI-----EHG--------IVVDW-DDMEKIWDHLFF---NELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFET  121 (371)
T ss_pred             ----ECCC-----CCC--------EECCH-HHHHHHHHHHHH---HCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             ----3775-----178--------65689-999999999964---01688855584477548999899999999999976


Q ss_pred             CCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             12222222210247888860344565507998724411454310102314654201332245521344766553678764
Q gi|255764494|r  161 AGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK  240 (652)
Q Consensus       161 AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~  240 (652)
                      -|+.-+.++.+|.+|++++|.     .+-+|+|+|++.+.|+-+  .+|.. +..+.-...+||++++..|.+.+...  
T Consensus       122 ~~vp~v~~~~~~~la~y~~g~-----~tglVVDiG~~~T~v~pV--~dG~~-~~~~~~~~~~gG~~l~~~l~~~l~~~--  191 (371)
T cd00012         122 FNVPALYVAIQAVLSLYASGR-----TTGLVVDSGDGVTHVVPV--YDGYV-LPHAIKRLDLAGRDLTRYLKELLRER--  191 (371)
T ss_pred             CCCCEEEEECHHHHHHHHCCC-----CEEEEEECCCCCEEEEEE--ECCEE-CHHHEEEEECHHHHHHHHHHHHHHHC--
T ss_conf             699879996505442565499-----628999879994688876--66698-12252998363999999999999973--


Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-----------------EEEEEECCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             20134302447899999999998854115565-----------------0358630443467887212687311000012
Q gi|255764494|r  241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTS-----------------QTEINLPFISANSAGAQHLNMKLTRAQFERL  303 (652)
Q Consensus       241 ~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~-----------------~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l  303 (652)
                       .+..+...+.       ..++..|+.++...                 ...+.+       .+|..  +.+..+.| .+
T Consensus       192 -~~~~~~~~~~-------~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~l-------Pdg~~--i~~~~er~-~~  253 (371)
T cd00012         192 -GYELNSSDER-------EIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYEL-------PDGRT--IKVGNERF-RA  253 (371)
T ss_pred             -CCCCCCHHHH-------HHHHHHHHHCCEECCCHHHHHHHHCCCCCCCCCEEEC-------CCCCE--EEECCHHH-HC
T ss_conf             -9998836779-------9999998752321587788886521377767541688-------99978--87373364-18


Q ss_pred             CCCCHH---------HHHHCCCCCCHHCC--CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCC-C---------CCCCCC
Q ss_conf             342000---------01100111101013--56311014663078530567788654101111-1---------113565
Q gi|255764494|r  304 VNHLIQ---------KTVEPCKKCLQDAG--LSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKS-P---------SKGVNP  362 (652)
Q Consensus       304 ~~~l~~---------~~~~~i~~~L~~a~--~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~-~---------~~~~np  362 (652)
                      ++.+++         .+.+.|.+++..+.  +.+.-...|+|+||+|++|.+.++|...+... +         ...-++
T Consensus       254 ~E~lF~P~~~~~~~~gl~~~i~~si~~~~~d~r~~L~~nIvl~GG~S~~~G~~~RL~~eL~~~~p~~~~~~v~~~~~~~~  333 (371)
T cd00012         254 PEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPER  333 (371)
T ss_pred             HHHHCCHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC
T ss_conf             36418943458866778999999998599999987772889955313673789999999996588767824875789988


Q ss_pred             CCHHHHHHHHCCC
Q ss_conf             3101111100022
Q gi|255764494|r  363 DEVVAMGAAIQAG  375 (652)
Q Consensus       363 deaVa~GAA~~a~  375 (652)
                      ..++=+||++.|.
T Consensus       334 ~~~aW~GgSilas  346 (371)
T cd00012         334 KYSVWLGGSILAS  346 (371)
T ss_pred             CEEEEHHHHHHHC
T ss_conf             8488430788777


No 30 
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.28  E-value=1.2e-09  Score=91.66  Aligned_cols=296  Identities=18%  Similarity=0.205  Sum_probs=155.2

Q ss_pred             CEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECC--------CCEEECHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf             1699804866069999989955997568986256279999489--------98996678986333083511002067549
Q gi|255764494|r    3 KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDE--------GERLVGQPAKRQAVTNPSNTIFAAKRLIG   74 (652)
Q Consensus         3 ~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~--------~~~~vG~~A~~~~~~~p~~ti~~~KrliG   74 (652)
                      ++|=||+|+.++++++..+..|.++        +||+|+....        ...++|..|....  .    ...+     
T Consensus         2 pavViD~Gs~~~r~G~ag~~~P~~i--------~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~-----   62 (373)
T smart00268        2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR--G----GLEL-----   62 (373)
T ss_pred             CEEEEECCCCEEEEEECCCCCCCEE--------ECCEEEEECCCCCCCCCCCCEEECHHHHHHC--C----CCEE-----
T ss_conf             8299989998599847989987599--------7565489877666657886568764677516--7----8658-----


Q ss_pred             CCCCCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCHHH
Q ss_conf             868726787652019869997599827999579587199999999999999999983884--733698537788740257
Q gi|255764494|r   75 RRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGET--VSKAVITVPAYFNDAQRQ  152 (652)
Q Consensus        75 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~--v~~~VitVP~~f~~~qR~  152 (652)
                                   ..|+     .+|.+        .. -+..-.++.++..   ++++..  -..+++|.|++.....|+
T Consensus        63 -------------~~p~-----~~G~i--------~d-~d~~e~i~~~~~~---~~l~~~~~~~pvlltep~~~~~~~r~  112 (373)
T smart00268       63 -------------KYPI-----EHGIV--------EN-WDDMEKIWDYTFF---NELRVEPEEHPVLLTEPPMNPKSNRE  112 (373)
T ss_pred             -------------CCCC-----CCCEE--------CC-HHHHHHHHHHHHH---HHCCCCCCCCCEEEECCCCCCHHHHH
T ss_conf             -------------6722-----36986--------78-9999999999978---75088966784477427999999999


Q ss_pred             HHHHHH-HHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf             886344-2112222222210247888860344565507998724411454310102314654201332245521344766
Q gi|255764494|r  153 ATKDAG-RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCL  231 (652)
Q Consensus       153 a~~~Aa-~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l  231 (652)
                      .+.+-+ +-.++.-+.+..+|.+|++++|.     .+-+|+|+|++.+.|+-+  .+|.. +..+.-...+||+++++.|
T Consensus       113 ~~~e~lFE~~~vp~~~~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV--~dG~~-~~~~~~~~~~gG~~l~~~l  184 (373)
T smart00268      113 KILEIMFETFNFPALYIAIQAVLSLYASGR-----TTGLVIDSGDGVTHVVPV--VDGYV-LPHAIKRIDIAGRDLTDYL  184 (373)
T ss_pred             HHHHHHHHHCCCCEEEEECCHHHHHHHCCC-----CEEEEEECCCCCEEEEEE--ECCEE-EHHHEEEEECCHHHHHHHH
T ss_conf             999999876699869997517666654389-----429999769994689986--89898-2112499977699999999


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-------------------CEEEEEECCCCCCCCCCCEEE
Q ss_conf             5536787642013430244789999999999885411556-------------------503586304434678872126
Q gi|255764494|r  232 VEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSST-------------------SQTEINLPFISANSAGAQHLN  292 (652)
Q Consensus       232 ~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~-------------------~~~~i~i~~~~~~~~~g~d~~  292 (652)
                      .+.+....   +..+...+.       .-.+.+|+.++.-                   ......+       .+|..+.
T Consensus       185 ~~~l~~~~---~~~~~~~~~-------~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l-------Pdg~~i~  247 (373)
T smart00268      185 KELLSERG---YQFNSSAEF-------EIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYEL-------PDGNTIK  247 (373)
T ss_pred             HHHHHHCC---CCCCCHHHH-------HHHHHHHHHCEEECCCHHHHHHHHHHHCCCCCCCCEEEC-------CCCCEEE
T ss_conf             99998639---998736689-------999997653016528668898776440236677420189-------7996897


Q ss_pred             EEECCCCCCCCCCCCHH---------HHHHCCCCCCHHCCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCC------
Q ss_conf             87311000012342000---------011001111010135--6311014663078530567788654101111------
Q gi|255764494|r  293 MKLTRAQFERLVNHLIQ---------KTVEPCKKCLQDAGL--SPSDIDEVVLVGGMTRMPKIQQSVQDFFNKS------  355 (652)
Q Consensus       293 ~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~~--~~~~I~~V~lvGGssriP~v~~~i~~~fg~~------  355 (652)
                        +..+.| ...+.+++         .+.+.|.+++..+..  .+.-...|+|+||+|++|.+.+.|.+.+..-      
T Consensus       248 --~~~er~-~~~E~lF~p~~~~~~~~gl~~~i~~si~~~~~d~r~~l~~nIil~GG~s~~~G~~~RL~~eL~~~~p~~~~  324 (373)
T smart00268      248 --VGNERF-RIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLK  324 (373)
T ss_pred             --ECCHHH-HCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf             --260453-27286449520235679879999999985999999978738799453136857899999999966899853


Q ss_pred             --CCCCCCCCCHHHHHHHHCCC
Q ss_conf             --11135653101111100022
Q gi|255764494|r  356 --PSKGVNPDEVVAMGAAIQAG  375 (652)
Q Consensus       356 --~~~~~npdeaVa~GAA~~a~  375 (652)
                        +....++.-++=.||++.|.
T Consensus       325 ~~v~~~~~~~~~aW~GgSilas  346 (373)
T smart00268      325 VKVIAPPERKYSVWLGGSILAS  346 (373)
T ss_pred             EEEECCCCCCEEEEHHHHHHHC
T ss_conf             8993599888127340657235


No 31 
>PTZ00004 actin; Provisional
Probab=99.24  E-value=1.2e-09  Score=91.67  Aligned_cols=307  Identities=15%  Similarity=0.160  Sum_probs=153.5

Q ss_pred             EEEEECCCCEEEEEEEECCEEEE-EECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHH
Q ss_conf             69980486606999998995599-75689862562799994899899667898633308351100206754986872678
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNVRV-IENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTV   82 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~~i-i~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~   82 (652)
                      .|=||+|+.++++++.....|.+ +++--|+...+....=...+..++|..|....     . ...++            
T Consensus         8 aiViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~-----~-~~~~~------------   69 (375)
T PTZ00004          8 ALVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPQVMVGMAEKDIFVGDEAQSKR-----G-ILTLK------------   69 (375)
T ss_pred             EEEEECCCCEEEEEECCCCCCCEEECCCCEEECCCCCCCCCCCCCEEECHHHHHHC-----C-CCEEC------------
T ss_conf             29999999839987798998877861733026763435686567657462776306-----7-62560------------


Q ss_pred             HHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCHHHHHHHH-HH
Q ss_conf             7652019869997599827999579587199999999999999999983884--73369853778874025788634-42
Q gi|255764494|r   83 AKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGET--VSKAVITVPAYFNDAQRQATKDA-GR  159 (652)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~--v~~~VitVP~~f~~~qR~a~~~A-a~  159 (652)
                            +|+     .+|        ....- +..-.++.++.   .+.++..  -..++||-|++-...+|+.+.+- -+
T Consensus        70 ------~p~-----~~g--------~i~d~-d~~e~~~~~~~---~~~L~v~~~e~pvlltE~~~~~~~~r~~~~e~lFE  126 (375)
T PTZ00004         70 ------YPI-----EHG--------IVTNW-DDMEKIWHHTF---YNELRVNPEEHPVLLTEAPMNPKQNREKMTQIMFE  126 (375)
T ss_pred             ------CCC-----CCC--------EECCH-HHHHHHHHHHH---HHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ------577-----589--------67589-99999999996---42148896548559961788878999999999874


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             11222222221024788886034456550799872441145431010231465420133224552134476655367876
Q gi|255764494|r  160 IAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTF  239 (652)
Q Consensus       160 ~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~  239 (652)
                      .-++.-+.+...|..+++++|.     .+-+|+|+|++.+.|+-  +-+|..- ....-..++||+++++.|.+.+.+. 
T Consensus       127 ~~~vp~~~~~~~~~ls~ya~g~-----~tglVVDiG~~~t~v~P--V~dG~~~-~~~~~~~~~gG~~lt~~l~~ll~~~-  197 (375)
T PTZ00004        127 TFNVPAMYVSIQAVLSLYSSGR-----TTGIVLDSGDGVTHTVP--IYEGYSL-PHAIMRLDMAGRDLTEYLMKILMER-  197 (375)
T ss_pred             CCCCCCEEEECHHHHHHHHCCC-----CEEEEEECCCCCEEEEE--EECCEEC-CHHEEEEECHHHHHHHHHHHHHHHC-
T ss_conf             0688827997537641331588-----41699985998368886--3677882-1241896260999999999999965-


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC-----------CCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCH
Q ss_conf             4201343024478999999999988541155-----------65035863044346788721268731100001234200
Q gi|255764494|r  240 KKENGIDLKQDTLALQRLKEAAEKAKIELSS-----------TSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLI  308 (652)
Q Consensus       240 ~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~-----------~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~  308 (652)
                        .+..+......       ..+.+|+.++.           +.......++..   .+|..  +.+..+.|. ..+.+|
T Consensus       198 --~~~~~~~~~~~-------~v~~iKe~~c~v~~d~~~~~~~~~~~~~~~~y~l---Pdg~~--i~~~~er~~-~~E~lF  262 (375)
T PTZ00004        198 --GHTFTTSAEKE-------IVRNIKEKLCYVALDFDEEMTNSEKSEIEEPYEL---PDGNI--ITVGNERFR-CPEVLF  262 (375)
T ss_pred             --CCCCCCHHHHH-------HHHHHHHHEEEECCCHHHHHHHCCCCCCCCCEEC---CCCCE--EEECHHHHC-CCHHHC
T ss_conf             --98887367899-------9998675501444687788753324656751699---99978--987757731-869771


Q ss_pred             HH---------HHHCCCCCCHHCC--CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCC--------CCCCCCCCHHHHH
Q ss_conf             00---------1100111101013--563110146630785305677886541011111--------1135653101111
Q gi|255764494|r  309 QK---------TVEPCKKCLQDAG--LSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSP--------SKGVNPDEVVAMG  369 (652)
Q Consensus       309 ~~---------~~~~i~~~L~~a~--~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~--------~~~~npdeaVa~G  369 (652)
                      +.         +.+.|.+++..+.  +.+.-...|+|+||+|++|.+.++|...+..-.        ...-++.-++=.|
T Consensus       263 ~P~~~g~~~~gl~~~i~~si~~~~~d~r~~L~~nIvl~GG~S~~~G~~~RL~~EL~~~~p~~~~v~v~~~~~r~~~aW~G  342 (375)
T PTZ00004        263 QPSLIGLEAPGIHETTFQSINKCDIDIRKDLYGNIVLSGGTTMFEGIGERLTKEISNLAPSSIKIKVVAPPERKYSVWIG  342 (375)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHH
T ss_conf             93325886775368999999869988999876488996542466368999999999768898348997489888315375


Q ss_pred             HHHCCC
Q ss_conf             100022
Q gi|255764494|r  370 AAIQAG  375 (652)
Q Consensus       370 AA~~a~  375 (652)
                      |++.|.
T Consensus       343 gSilas  348 (375)
T PTZ00004        343 GSILSS  348 (375)
T ss_pred             HHHHHC
T ss_conf             899877


No 32 
>pfam06406 StbA StbA protein. This family consists of several bacterial StbA plasmid stability proteins.
Probab=99.24  E-value=3.5e-10  Score=95.84  Aligned_cols=204  Identities=17%  Similarity=0.253  Sum_probs=113.3

Q ss_pred             CCCCCEEEEEECC--CCC-CCHHHHHHHHHHHCCC--------------CCCCCCCCHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf             8847336985377--887-4025788634421122--------------2222221024788886034456550799872
Q gi|255764494|r  132 GETVSKAVITVPA--YFN-DAQRQATKDAGRIAGL--------------DVLRIINEPTAAALAYGLDKKDARTVIVFDF  194 (652)
Q Consensus       132 ~~~v~~~VitVP~--~f~-~~qR~a~~~Aa~~AGl--------------~v~~li~EptAAal~Y~~~~~~~~~vlV~D~  194 (652)
                      +++| +.|+|-|.  ||+ +.||+--.-+-+.+.|              ..+.++.|+.||++..-.+..+....||+|+
T Consensus        93 ~~~V-~lvvgLPvseyy~~d~q~n~~nI~rK~~nl~~~v~l~~~~~f~I~~v~V~pEslpA~~d~l~~~~~~~s~LIVDi  171 (318)
T pfam06406        93 PQPV-DLVVTLPLSEYYDANNQPNEENIERKKANVMRPVELNGGDSFTIRSVSVMPESLPAGFSVLKDLDSFESLLIVDL  171 (318)
T ss_pred             CCEE-EEEECCCHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             8705-899658469973753231488999999975060210787741577777850542567768874287673389980


Q ss_pred             CCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             44114543101023146542013322455213447665536787642013430244789999999999885411556503
Q gi|255764494|r  195 GGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQT  274 (652)
Q Consensus       195 Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~  274 (652)
                      ||.|+|++++.  ++.-.+-+..|++.+|--.+..++...+...     ..+.+ +.     +..  +-.|..+...---
T Consensus       172 GGtT~Dv~vv~--g~~~~~s~~~g~~~iGvs~v~~~v~~~L~~~-----~~~~s-~~-----iad--~~I~~r~d~~~l~  236 (318)
T pfam06406       172 GGTTLDVAHVR--GQLEGISKIHGDSRIGVSLVTDAVKSALATA-----STRTS-SF-----IAD--ELIKHRHDNDYLK  236 (318)
T ss_pred             CCCEEEEEEEC--CCCCCCCEEECCCCCCHHHHHHHHHHHHHHH-----CCCCC-HH-----HHH--HHHHHHHHHHHHH
T ss_conf             89468899982--6767544010479977689999999999873-----27751-24-----589--9999631255554


Q ss_pred             EEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCC-
Q ss_conf             5863044346788721268731100001234200001100111101013563110146630785305677886541011-
Q gi|255764494|r  275 EINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN-  353 (652)
Q Consensus       275 ~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg-  353 (652)
                      .     ...+.    + ....-.+..++.++.+.+++    .+.|.+    ..++..|+||||++.+  +...|++.|+ 
T Consensus       237 ~-----~~~d~----~-~~~~V~~~i~~~~~~L~~~v----~~~l~~----~~~~~~V~lVGGGA~l--i~~air~a~~~  296 (318)
T pfam06406       237 Q-----RINDE----D-KRDSVMNVINEAVKKLQERV----IRALSR----FSGYTHVMVVGGGAEL--IATAIKKATGV  296 (318)
T ss_pred             H-----HCCCH----H-HHHHHHHHHHHHHHHHHHHH----HHHHHC----CCCCCEEEEECCCHHH--HHHHHHHHHCC
T ss_conf             4-----21771----4-77999999999999999999----999852----2787669998787899--89999998469


Q ss_pred             --CCCCCCCCCCCHHHHHHH
Q ss_conf             --111113565310111110
Q gi|255764494|r  354 --KSPSKGVNPDEVVAMGAA  371 (652)
Q Consensus       354 --~~~~~~~npdeaVa~GAA  371 (652)
                        ..+...-+|.-|-|+|-+
T Consensus       297 p~~~i~~~d~PqFAnarGm~  316 (318)
T pfam06406       297 PDAKFIMVDNPQFALVLGMA  316 (318)
T ss_pred             CCCEEEECCCHHHHHHHHHH
T ss_conf             98808956980677877775


No 33 
>pfam00022 Actin Actin.
Probab=99.22  E-value=1.7e-09  Score=90.57  Aligned_cols=279  Identities=19%  Similarity=0.247  Sum_probs=147.9

Q ss_pred             EEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCC----CEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf             6998048660699999899559975689862562799994899----899667898633308351100206754986872
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEG----ERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFND   79 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~----~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d   79 (652)
                      .|=||+|+.++++++.....|.++        +||+|+-..+.    +..+|..+...   .+.   ..+          
T Consensus         5 ~vViD~Gs~~~K~G~age~~P~~v--------~ps~vg~~~~~~~~~~~~~g~~~~~~---~~~---~~~----------   60 (369)
T pfam00022         5 ALVIDNGSGTTKAGFAGEDAPRAV--------IPSVVGRPRGRGVMVKYYVGDEAQSK---RPG---LEV----------   60 (369)
T ss_pred             CEEEECCCCEEEEEECCCCCCCEE--------ECCEEEEECCCCCCCCEEECHHHHCC---CCC---CEE----------
T ss_conf             699999998499847989988778--------81724788898865560468188623---677---378----------


Q ss_pred             HHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCHHHHHHHH
Q ss_conf             6787652019869997599827999579587199999999999999999983884--73369853778874025788634
Q gi|255764494|r   80 STVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGET--VSKAVITVPAYFNDAQRQATKDA  157 (652)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~--v~~~VitVP~~f~~~qR~a~~~A  157 (652)
                              ..|+     .+        |..... +..-.++.++.   .+.++..  -..++||-|++.+..+|+.+.+-
T Consensus        61 --------~~p~-----~~--------G~i~d~-d~~e~i~~~~~---~~~l~~~~~~~~vlltep~~~~~~~r~~~~ei  115 (369)
T pfam00022        61 --------RYPI-----ED--------GIVENW-DAMEKIWEHTF---FEELRVDPEEHPLLLTEPPLNPPANREKATEI  115 (369)
T ss_pred             --------CCCC-----CC--------CEECCH-HHHHHHHHHHH---HHHCCCCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf             --------0621-----16--------823689-99999999985---55228896558657863699989999999999


Q ss_pred             H-HHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             4-211222222221024788886034456550799872441145431010231465420133224552134476655367
Q gi|255764494|r  158 G-RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHIC  236 (652)
Q Consensus       158 a-~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~  236 (652)
                      . +--++.-+.+...|.+|++++|.     .+-+|+|+|++.++|+-  +-+|.. +....-..++||+++++.|.+.+.
T Consensus       116 lFE~~~vp~~~~~~~~~ls~y~~g~-----~tglVVDiG~~~T~v~p--V~eG~~-~~~~~~~~~~GG~~lt~~l~~~L~  187 (369)
T pfam00022       116 MFETFGVPALYLAKQAVLSAYASGR-----TTGLVVDSGAGVTSVVP--VYEGYV-LQKAIRRSDLAGDDLTDYLRKLLS  187 (369)
T ss_pred             HHHCCCCCEEEEECHHHHHHHHCCC-----CEEEEEECCCCCEEEEE--EECCEE-CHHHHEEEECHHHHHHHHHHHHHH
T ss_conf             9830699759997638666764488-----35999975999668887--568798-013516760749999999999998


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---EEE-------EEECCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf             876420134302447899999999998854115565---035-------8630443467887212687311000012342
Q gi|255764494|r  237 DTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTS---QTE-------INLPFISANSAGAQHLNMKLTRAQFERLVNH  306 (652)
Q Consensus       237 ~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~---~~~-------i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~  306 (652)
                      ..     +...+.+....   ....+..|+.++...   ...       ...++.   ..+|..  +.+..+.| ...+.
T Consensus       188 ~~-----~~~~~~~~~~~---~~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~y~---LPDG~~--i~~~~er~-~~~E~  253 (369)
T pfam00022       188 SR-----GYVDSFNTYAE---EEVVRDIKESLCYVSDDPFGDTAASSSPPTVSYE---LPDGSV--IILGNERF-RVPEI  253 (369)
T ss_pred             HC-----CCCCCCCCHHH---HHHHHHHHHHEEECCCCHHHHHHHCCCCCCCEEE---CCCCEE--EEECHHHH-CCCHH
T ss_conf             55-----99766640778---9999999887142159867887534688773388---999859--87153663-08175


Q ss_pred             CHH---------HHHHCCCCCCHHCCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf             000---------011001111010135--63110146630785305677886541011
Q gi|255764494|r  307 LIQ---------KTVEPCKKCLQDAGL--SPSDIDEVVLVGGMTRMPKIQQSVQDFFN  353 (652)
Q Consensus       307 l~~---------~~~~~i~~~L~~a~~--~~~~I~~V~lvGGssriP~v~~~i~~~fg  353 (652)
                      +|+         .+.+.|.+++..+..  .+.-...|+|+||+|++|.+.++|+..+.
T Consensus       254 lF~P~~~~~~~~gl~~~i~~si~~~~~d~r~~l~~nIvl~GG~S~~~Gf~~RL~~el~  311 (369)
T pfam00022       254 LFNPSLIGSESAGIPELIYDSINACDVDLRPSLLANIVVTGGTTLFPGFTERLEKELA  311 (369)
T ss_pred             HCCCHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHH
T ss_conf             3890222887899899999999859999999998270684564678578999999999


No 34 
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.17  E-value=4.9e-11  Score=102.31  Aligned_cols=194  Identities=26%  Similarity=0.379  Sum_probs=139.8

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCE
Q ss_conf             99999999999838847336985377887402578863442112222222210247888860344565507998724411
Q gi|255764494|r  119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGT  198 (652)
Q Consensus       119 iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt  198 (652)
                      +.+++++.+|+.||-.++++--++|+---..-.++..+..+-||++++..++||||||.-.+++     .-.|+|+||||
T Consensus        77 iVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~-----dg~VVDiGGGT  151 (277)
T COG4820          77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD-----DGGVVDIGGGT  151 (277)
T ss_pred             HHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHCCC-----CCCEEEECCCC
T ss_conf             9999998898863937630234679986689842899842105823465247712677876267-----77279837984


Q ss_pred             EEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             45431010231465420133224552134476655367876420134302447899999999998854115565035863
Q gi|255764494|r  199 FDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINL  278 (652)
Q Consensus       199 ~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i  278 (652)
                      +-+||++-  |.+.-   .-|.--||..+...|+-+        |++++.           +||..|..-  ....    
T Consensus       152 TGIsi~kk--GkViy---~ADEpTGGtHmtLvlAG~--------ygi~~E-----------eAE~~Kr~~--k~~~----  201 (277)
T COG4820         152 TGISIVKK--GKVIY---SADEPTGGTHMTLVLAGN--------YGISLE-----------EAEQYKRGH--KKGE----  201 (277)
T ss_pred             CEEEEEEC--CCEEE---ECCCCCCCEEEEEEEECC--------CCCCHH-----------HHHHHHHCC--CCCH----
T ss_conf             12699974--84799---614898962699997135--------686776-----------788764214--4520----


Q ss_pred             CCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             04434678872126873110000123420000110011110101356311014663078530567788654101111111
Q gi|255764494|r  279 PFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSK  358 (652)
Q Consensus       279 ~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~  358 (652)
                                          |.-..+.|.+++..+++.+-++..++     ..+.|+||+|.-|.+.+..++.|+-.+..
T Consensus       202 --------------------Eif~~v~PV~eKMAeIv~~hie~~~i-----~dl~lvGGac~~~g~e~~Fe~~l~l~v~~  256 (277)
T COG4820         202 --------------------EIFPVVKPVYEKMAEIVARHIEGQGI-----TDLWLVGGACMQPGVEELFEKQLALQVHL  256 (277)
T ss_pred             --------------------HCCCCHHHHHHHHHHHHHHHHCCCCC-----CCEEEECCCCCCCCHHHHHHHHHCCCCCC
T ss_conf             --------------------11200207999999999998445887-----60588636326702799999874641136


Q ss_pred             CCCCCCHHHHHHHH
Q ss_conf             35653101111100
Q gi|255764494|r  359 GVNPDEVVAMGAAI  372 (652)
Q Consensus       359 ~~npdeaVa~GAA~  372 (652)
                      .-.|...--+|-|.
T Consensus       257 P~~p~y~TPLgIA~  270 (277)
T COG4820         257 PQHPLYMTPLGIAS  270 (277)
T ss_pred             CCCCCEECHHHHHH
T ss_conf             78840213145221


No 35 
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.05  E-value=1.4e-08  Score=83.66  Aligned_cols=179  Identities=16%  Similarity=0.256  Sum_probs=103.3

Q ss_pred             CCCCCCCCHHHHHHHHHCCC------CCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             22222210247888860344------565507998724411454310102314654201332245521344766553678
Q gi|255764494|r  164 DVLRIINEPTAAALAYGLDK------KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICD  237 (652)
Q Consensus       164 ~v~~li~EptAAal~Y~~~~------~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~  237 (652)
                      +-++++.-|.-|.+++-++.      ..++++.|+|+|+||+|+.++.... ..+-++++-  ..|=.++-.+|++++.+
T Consensus       155 ~~v~ViPQp~Gt~~~~~ld~~~~i~~l~~g~igIIDiG~gTTD~~v~~~~~-~~~~~s~t~--~~G~~~~y~~I~~~I~~  231 (346)
T PRK13917        155 KGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMK-RVEEESFVI--NKGTIDFYKRIASHVSK  231 (346)
T ss_pred             EEEEEECCCCHHHHHHHHCCCCCCHHHCCCCEEEEECCCCCEEEEEECCCE-ECCCCCCCC--HHHHHHHHHHHHHHHHH
T ss_conf             489998056047899885435441232168589997389837899861752-612102560--26899999999998642


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             76420134302447899999999998854115565035863044346788721268731100001234200001100111
Q gi|255764494|r  238 TFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKK  317 (652)
Q Consensus       238 ~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~  317 (652)
                      +   .++..+.     ..+|...++.-+...+..  ..             .|++     ++++...+.+..++...|..
T Consensus       232 ~---~~~~~~~-----~~~l~~~~~~g~i~~~~~--~~-------------idi~-----~~v~~~~~~~a~~Iv~~i~~  283 (346)
T PRK13917        232 K---SEGASIT-----PRMIEKGLEYKQCKLNQK--TV-------------IDFK-----DEFYKEQDSLIEEVMSNFEI  283 (346)
T ss_pred             C---CCCCCCC-----HHHHHHHHHCCCEEECCC--CE-------------EEHH-----HHHHHHHHHHHHHHHHHHHH
T ss_conf             1---5788677-----999999986497687586--42-------------6558-----89999999999999999998


Q ss_pred             CCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf             10101356311014663078530567788654101111111356531011111000223467
Q gi|255764494|r  318 CLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG  379 (652)
Q Consensus       318 ~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~  379 (652)
                      ...    ..+++|.|+++||++..  +++.+++.|+.-....-||..|.|+|=..+|.++-.
T Consensus       284 ~w~----~~~~~d~IiltGGGa~~--l~~~l~~~~~~v~~~~~d~qfANarGy~k~g~~~~~  339 (346)
T PRK13917        284 TVG----NINSIDRIIVTGGGANI--HFDSLSHYYSDVFEKADDSQFSNVRGYEKLGELLKN  339 (346)
T ss_pred             HHC----CHHHHCEEEEECCCHHH--HHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf             737----71232279993784899--999999985543783678156799999999998764


No 36 
>PTZ00280 actin; Provisional
Probab=99.01  E-value=5.7e-08  Score=79.11  Aligned_cols=298  Identities=21%  Similarity=0.220  Sum_probs=140.8

Q ss_pred             CC-CEEEEECCCCEEEEEEEECCEEE-EEECCCCCCCC-CE--EEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf             98-16998048660699999899559-97568986256-27--9999489989966789863330835110020675498
Q gi|255764494|r    1 MS-KVIGIDLGTTNSCVAIMDGKNVR-VIENAEGTRTT-PS--MVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGR   75 (652)
Q Consensus         1 Ms-~viGIDlGtt~s~va~~~~~~~~-ii~n~~g~r~~-PS--~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~   75 (652)
                      |+ ++|=||+|+.++++++.....|. ++++.-|.+.+ |.  --.+ ++.+.++|+++.....      ..+++     
T Consensus         1 m~~paiViD~GS~~~KaG~aGed~P~~iips~~g~~~~~~~~~~~~~-~~~~~~ig~e~~~~~~------~~~~~-----   68 (416)
T PTZ00280          1 MSYPVVVIDNGTGYTKMGYAGNEEPTYIIPSTYADNETVRRRSNDVF-EDLDFYIGDEAAARAS------SCTLS-----   68 (416)
T ss_pred             CCCCEEEEECCCCEEEEEECCCCCCCEEECCEEECCCCCCCCCCCCC-CCCCEEECHHHHHCCC------CCEEC-----
T ss_conf             99998999899983898778899987687553131576664445665-5454442467762266------75465-----


Q ss_pred             CCCCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCHHHH
Q ss_conf             68726787652019869997599827999579587199999999999999999983884--7336985377887402578
Q gi|255764494|r   76 RFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGET--VSKAVITVPAYFNDAQRQA  153 (652)
Q Consensus        76 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~--v~~~VitVP~~f~~~qR~a  153 (652)
                                   .|+     .+|.        ... -+....++.++-   .+.+...  -..+++|-|++-...+|+.
T Consensus        69 -------------~Pi-----~~G~--------I~d-wd~~e~iw~~~~---~~~L~i~p~e~~vlltE~~~~~~~~Rek  118 (416)
T PTZ00280         69 -------------YPI-----KHGI--------VED-WDKMERIWQHCI---YKYLRVEPEEHGFILTEPPANPPENREY  118 (416)
T ss_pred             -------------CCC-----CCCE--------ECC-HHHHHHHHHHHH---HCCCCCCCCCCCEEEECCCCCCHHHHHH
T ss_conf             -------------741-----1698--------678-999999999984---2024768777866842289898899999


Q ss_pred             HHHH-HHHCCCCCCCCCCCHHHHHHH-HHCC------CCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCH
Q ss_conf             8634-421122222222102478888-6034------4565507998724411454310102314654201332245521
Q gi|255764494|r  154 TKDA-GRIAGLDVLRIINEPTAAALA-YGLD------KKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGE  225 (652)
Q Consensus       154 ~~~A-a~~AGl~v~~li~EptAAal~-Y~~~------~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~  225 (652)
                      +.+. .+.-++.-+-+.+.|.-|+++ |.-.      .....+-||+|+|.+.+.|  +-+-+|..--.+ .-..++||+
T Consensus       119 ~~eilFE~f~vp~~~~~~~~~Lsl~as~~~~~~~~~~~~G~~tgLVVD~G~~~t~v--vPV~dG~~l~~~-~~r~~iGG~  195 (416)
T PTZ00280        119 TAEVMFETFGVKQLHIAVQGALALRASWTSGKAKELGLAGKDTGTVIDSGDGVTHV--IPIVDGFVIGSA-IQHIPLAGR  195 (416)
T ss_pred             HHHHHHHHCCCCEEEEECCHHHEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE--EEEECCEECHHH-HEECCCHHH
T ss_conf             99998851578769996022320000134444543345898628999808995378--543778983256-411165799


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE--------EEEEEC-----CCCCCCCCCCEEE
Q ss_conf             344766553678764201343024478999999999988541155650--------358630-----4434678872126
Q gi|255764494|r  226 DFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQ--------TEINLP-----FISANSAGAQHLN  292 (652)
Q Consensus       226 d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~--------~~i~i~-----~~~~~~~~g~d~~  292 (652)
                      +++..|.+.+.++     +.++..+. .    +.-++.+|+.++-...        ..-..+     ....+...+.++.
T Consensus       196 ~lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~cyv~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (416)
T PTZ00280        196 DITNFVLERLRER-----GEPVPPDD-A----LLLAQRIKEQYCYIARDIAREFDTYDSDLPKHITKHCAVNSKTGQPYS  265 (416)
T ss_pred             HHHHHHHHHHHHC-----CCCCCCHH-H----HHHHHHCCCCCCEECCCHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCE
T ss_conf             9999999999973-----99988378-8----889986210136025707889987640201114334566666788833


Q ss_pred             EEECCCCC---CCCCCCCH------HHHHHCCCCCCHHCC--CCCEEEEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf             87311000---01234200------001100111101013--563110146630785305677886541011
Q gi|255764494|r  293 MKLTRAQF---ERLVNHLI------QKTVEPCKKCLQDAG--LSPSDIDEVVLVGGMTRMPKIQQSVQDFFN  353 (652)
Q Consensus       293 ~~itR~~f---e~l~~~l~------~~~~~~i~~~L~~a~--~~~~~I~~V~lvGGssriP~v~~~i~~~fg  353 (652)
                      +.+..+.|   |-+..|-+      ..+.++|.+++..+.  +.+.-...|+|+||+|.+|.+.++|+.-+.
T Consensus       266 i~lg~Erf~~pE~LF~P~~~~~~~~~~l~~li~~sI~~c~~d~r~~L~~NIvL~GGsSl~~Gf~eRL~~EL~  337 (416)
T PTZ00280        266 VDVGYEKFLGPEVFFHPEIFSGEWTTPLPEVVDRAVWSCPIDCRRPLYRNIVLSGGTTMFPKFDKRLQKDLR  337 (416)
T ss_pred             EECCHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf             415523213833314863347766678879999999858888999987488996722477578999999999


No 37 
>PTZ00281 actin; Provisional
Probab=98.93  E-value=5.3e-08  Score=79.32  Aligned_cols=306  Identities=17%  Similarity=0.185  Sum_probs=147.5

Q ss_pred             EEEEECCCCEEEEEEEECCEEEE-EECCCCCC-CCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH
Q ss_conf             69980486606999998995599-75689862-56279999489989966789863330835110020675498687267
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNVRV-IENAEGTR-TTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDST   81 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~~i-i~n~~g~r-~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~   81 (652)
                      .|=||+|+.++++++.....|.+ +++--|+. .....+.... ...++|..+....   .   ...+            
T Consensus         8 avViD~Gs~~~k~G~aGe~~P~~i~ps~vg~~~~~~~~~~~~~-~~~~~g~~~~~~~---~---~~~~------------   68 (376)
T PTZ00281          8 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQ-KDSYVGDEAQSKR---G---ILTL------------   68 (376)
T ss_pred             EEEEECCCCEEEEEECCCCCCCEEEECCCEEECCCCCCCCCCC-CCCEECCHHHHCC---C---CEEE------------
T ss_conf             6999999982997479899987775074236876454457666-6744274566127---7---5278------------


Q ss_pred             HHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCC--CCCEEEEEECCCCCCCHHHHHHHHH-
Q ss_conf             8765201986999759982799957958719999999999999999998388--4733698537788740257886344-
Q gi|255764494|r   82 VAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGE--TVSKAVITVPAYFNDAQRQATKDAG-  158 (652)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~--~v~~~VitVP~~f~~~qR~a~~~Aa-  158 (652)
                            .+|+     .+|        ....- +..-.++.++.   .+.+..  .-..++||-|++-...+|+.+.+.. 
T Consensus        69 ------~~pi-----~~g--------~i~dw-d~~e~~~~~~~---~~~l~v~p~e~pvllte~~~~~~~~Re~~~eilF  125 (376)
T PTZ00281         69 ------KYPI-----EHG--------IVTNW-DDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF  125 (376)
T ss_pred             ------CCCC-----CCC--------EECCH-HHHHHHHHHHH---HHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             ------0687-----578--------47789-99999999996---3113888343832676269898899999999985


Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             21122222222102478888603445655079987244114543101023146542013322455213447665536787
Q gi|255764494|r  159 RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT  238 (652)
Q Consensus       159 ~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~  238 (652)
                      +--+...+.+...|..+++++|.     .+-+|+|+|++.+.|+-  +-+|.. +....-..++||+++++.|.+.+.+.
T Consensus       126 E~~~vp~~~~~~~~~ls~ya~g~-----~tglVVDiG~~~T~v~P--V~dG~~-~~~~~~~~~~gG~~lt~~l~~~l~~~  197 (376)
T PTZ00281        126 ETFNTPAMYVAIQAVLSLYASGR-----TTGIVMDSGDGVSHTVP--IYEGYA-LPHAILRLDLAGRDLTDYMMKILTER  197 (376)
T ss_pred             CCCCCCCEEEECCHHHHHHCCCC-----CEEEEEECCCCCCEEEE--EECCEE-CCHHHEEEECCHHHHHHHHHHHHHHC
T ss_conf             00699807997624210020698-----43899972899616875--267887-11223444273999999999999965


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC---CE---------EEEEECCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf             642013430244789999999999885411556---50---------358630443467887212687311000012342
Q gi|255764494|r  239 FKKENGIDLKQDTLALQRLKEAAEKAKIELSST---SQ---------TEINLPFISANSAGAQHLNMKLTRAQFERLVNH  306 (652)
Q Consensus       239 ~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~---~~---------~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~  306 (652)
                           +.++.....  .   .-++.+|+.+...   .+         ....-.+.   ..+|..  +.+..+.| ...+.
T Consensus       198 -----~~~~~~~~~--~---~~v~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~---LPDg~~--i~~~~er~-~~~E~  261 (376)
T PTZ00281        198 -----GYSFTTTAE--R---EIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYE---LPDGQV--ITIGNERF-RCPEA  261 (376)
T ss_pred             -----CCCCCCHHH--H---HHHHHHHHHCCEECCCHHHHHHHHHCCCCCCEEEE---CCCCCE--EEECHHHH-HCCHH
T ss_conf             -----988874788--9---99998565213651677899875005864220159---999978--87462453-08586


Q ss_pred             CHHH---------HHHCCCCCCHHCC--CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCC--------CCCCCCCCCHHH
Q ss_conf             0000---------1100111101013--56311014663078530567788654101111--------111356531011
Q gi|255764494|r  307 LIQK---------TVEPCKKCLQDAG--LSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKS--------PSKGVNPDEVVA  367 (652)
Q Consensus       307 l~~~---------~~~~i~~~L~~a~--~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~--------~~~~~npdeaVa  367 (652)
                      +|+.         +.+.|.+++..+.  +.+.-...|+|+||+|++|.+.++|...+..-        +...-++..++=
T Consensus       262 lF~P~~~g~~~~gl~~~i~~si~~c~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~r~~~aW  341 (376)
T PTZ00281        262 LFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVW  341 (376)
T ss_pred             HCCCHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCH
T ss_conf             64903138876770799999998599999997751869646402383589999999996689983589954897774254


Q ss_pred             HHHHHCCC
Q ss_conf             11100022
Q gi|255764494|r  368 MGAAIQAG  375 (652)
Q Consensus       368 ~GAA~~a~  375 (652)
                      .||++.|.
T Consensus       342 ~GgSilas  349 (376)
T PTZ00281        342 IGGSILAS  349 (376)
T ss_pred             HHHHHHHC
T ss_conf             75899885


No 38 
>KOG0679 consensus
Probab=98.82  E-value=7.2e-07  Score=70.73  Aligned_cols=179  Identities=18%  Similarity=0.199  Sum_probs=102.7

Q ss_pred             EEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEE--------ECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf             699804866069999989955997568986256279999--------489989966789863330835110020675498
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGF--------TDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGR   75 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~--------~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~   75 (652)
                      .|=||.|.-.+.+++....-|..        .+||+++.        .+.+..++++.|..  ...|.--+....+- |.
T Consensus        13 alViDpGS~~traGyaged~Pk~--------ilPS~~G~~tk~~~d~~~~~~~y~~~~ai~--~pr~gmEv~~~i~n-Gl   81 (426)
T KOG0679          13 ALVIDPGSHTTRAGYAGEDSPKA--------ILPSVYGKVTKTDGDAEDKKGYYVDENAIH--VPRPGMEVKTPIKN-GL   81 (426)
T ss_pred             EEEEECCCCEEECCCCCCCCCCC--------CCCCEEEEEECCCCCCCCCCCEEEECHHCC--CCCCCCEECCCHHC-CC
T ss_conf             59980797157612257778642--------256403342013676455664475031003--78999733040114-77


Q ss_pred             CCCCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCC--CCCEEEEEECCCCCCCHHHH
Q ss_conf             6872678765201986999759982799957958719999999999999999998388--47336985377887402578
Q gi|255764494|r   76 RFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGE--TVSKAVITVPAYFNDAQRQA  153 (652)
Q Consensus        76 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~--~v~~~VitVP~~f~~~qR~a  153 (652)
                      - .|                                 =++.-++.++..+   ..|..  .-.-++||-|++=+..+|+-
T Consensus        82 v-~d---------------------------------WD~~~~~w~~~~~---~~Lk~~p~ehP~litEp~wN~~~~Rek  124 (426)
T KOG0679          82 V-ED---------------------------------WDLFEMQWRYAYK---NQLKVNPEEHPVLITEPPWNTRANREK  124 (426)
T ss_pred             C-CC---------------------------------HHHHHHHHHHHHH---HHHHCCCCCCCEEEECCCCCCHHHHHH
T ss_conf             5-34---------------------------------7999999999986---453049432654651388885899999


Q ss_pred             HHHHH-HHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf             86344-21122222222102478888603445655079987244114543101023146542013322455213447665
Q gi|255764494|r  154 TKDAG-RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLV  232 (652)
Q Consensus       154 ~~~Aa-~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~  232 (652)
                      +.+.+ +--.+....|..+|+++|++-     ...+-||+|+|++++.||=  +.+|.+--.++. -..|||+-++..+.
T Consensus       125 ~~ElmFE~~nvPAf~L~k~~v~~AFA~-----GrstalVvDiGa~~~svsP--V~DG~Vlqk~vv-ks~laGdFl~~~~~  196 (426)
T KOG0679         125 LTELMFEKLNVPAFYLAKTAVCTAFAN-----GRSTALVVDIGATHTSVSP--VHDGYVLQKGVV-KSPLAGDFLNDQCR  196 (426)
T ss_pred             HHHHHHHHCCCCEEEEECHHHHHHHHC-----CCCCEEEEEECCCCCEEEE--EECCEEEEEEEE-ECCCCHHHHHHHHH
T ss_conf             999998644885588844189999865-----8973599972688742433--321367540157-44562578999999


Q ss_pred             HHHHHH
Q ss_conf             536787
Q gi|255764494|r  233 EHICDT  238 (652)
Q Consensus       233 ~~~~~~  238 (652)
                      ++|.++
T Consensus       197 q~l~~~  202 (426)
T KOG0679         197 QLLEPK  202 (426)
T ss_pred             HHHHHC
T ss_conf             987660


No 39 
>TIGR01174 ftsA cell division protein FtsA; InterPro: IPR003494 FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains .; GO: 0007049 cell cycle.
Probab=98.58  E-value=2.4e-06  Score=66.74  Aligned_cols=179  Identities=20%  Similarity=0.354  Sum_probs=120.6

Q ss_pred             HHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf             78863442112222222210247888860344565507998724411454310102314654201332245521344766
Q gi|255764494|r  152 QATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCL  231 (652)
Q Consensus       152 ~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l  231 (652)
                      +.+..+...+|+++..++..+.|++.+.--+...+-.++++|+||||+|+.+..-  |.+.   ..+...+||..+..-+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~d~g~g~~~~~~~~~--g~~~---~~~~~p~g~~~~~~d~  243 (393)
T TIGR01174       169 RNLVKCVERCGLEVDDIVLSGLASAIAVLTEDEKELGVLLIDIGGGTTDLAVYTG--GSLR---YTGVLPIGGNHVTKDL  243 (393)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEEEC--CCEE---EEEEEECCCHHHHHHH
T ss_conf             8999999870773123111212212332122211045689961886035677636--8024---4333103421445556


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC--------CCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             55367876420134302447899999999998854115--------5650358630443467887212687311000012
Q gi|255764494|r  232 VEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELS--------STSQTEINLPFISANSAGAQHLNMKLTRAQFERL  303 (652)
Q Consensus       232 ~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS--------~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l  303 (652)
                      ...+.-...                   .+|+.|....        ......+.++....+    ......+++..+..+
T Consensus       244 ~~~~~~~~~-------------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~  300 (393)
T TIGR01174       244 AKALRTPLE-------------------EAERIKIKYGCALYPLLEEGPDENVEVPSVGSD----GRPPRSLSRKELAEI  300 (393)
T ss_pred             HHHHCCCHH-------------------HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC----CCCCCHHHHHHHHHH
T ss_conf             776248733-------------------556665442011100001465431453145787----654420118899998


Q ss_pred             CCCCHHHHHHCCC-------CCCHHCCCCCEE-EEEEEECCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             3420000110011-------110101356311-014663078530567788654101111111
Q gi|255764494|r  304 VNHLIQKTVEPCK-------KCLQDAGLSPSD-IDEVVLVGGMTRMPKIQQSVQDFFNKSPSK  358 (652)
Q Consensus       304 ~~~l~~~~~~~i~-------~~L~~a~~~~~~-I~~V~lvGGssriP~v~~~i~~~fg~~~~~  358 (652)
                      +.+.+..+...+.       ..+...+..... ...+++.||.+.++.+.+.....|..++..
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~g~~~~~~~~~~~~~~~  363 (393)
T TIGR01174       301 IEARAEELLELVKDELLKLQKELRKSGFPKEELGGGIVLTGGGAQLEGLKELAEEVFDNPVRL  363 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCHHC
T ss_conf             878899999998888999998886405651230364266266022246899998863131000


No 40 
>PRK10331 L-fuculokinase; Provisional
Probab=98.47  E-value=8.3e-06  Score=62.68  Aligned_cols=55  Identities=22%  Similarity=0.212  Sum_probs=45.5

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf             10146630785305677886541011111113565310111110002234675221
Q gi|255764494|r  328 DIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKD  383 (652)
Q Consensus       328 ~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~  383 (652)
                      .++.|.++||.||.|...+++.+.+|+++...-+ .|+.++|||+.|++=.|..++
T Consensus       389 ~~~~i~~~GGgs~s~~w~Qi~ADv~g~pV~~~~~-~e~~alGaA~la~~a~G~~~~  443 (470)
T PRK10331        389 KATELLLVGGGSRNALWNQIKANMLDIPIKVLDD-AETTVAGAAMFGWYGVGEFSS  443 (470)
T ss_pred             CCCEEEEECCHHHCHHHHHHHHHHHCCEEEECCC-CCHHHHHHHHHHHHHCCCCCC
T ss_conf             9787999787133799999999986985894798-854899999999998298899


No 41 
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=98.46  E-value=3.2e-05  Score=58.21  Aligned_cols=58  Identities=26%  Similarity=0.264  Sum_probs=46.8

Q ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf             13563110146630785305677886541011111113565310111110002234675221
Q gi|255764494|r  322 AGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKD  383 (652)
Q Consensus       322 a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~  383 (652)
                      ++..   ++.|.++||.||.|...+++.+.||.++.. ....|+.++|||+.|++-.|..++
T Consensus       407 ~g~~---~~~i~~~GGgsks~lw~Qi~ADv~g~pV~~-~~~~e~~alGaA~lAa~a~G~~~~  464 (521)
T PRK10939        407 SGVF---PSSLVFAGGGSKGKLWSQILADVTGLPVKV-PVVKEATALGCAIAAGVGAGIYSS  464 (521)
T ss_pred             CCCC---CCEEEEECCCCCCHHHHHHHHHHHCCEEEE-CCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             3999---897999896401799999998866981794-787752999999999998387699


No 42 
>PTZ00294 glycerol kinase; Provisional
Probab=98.44  E-value=3e-06  Score=66.01  Aligned_cols=65  Identities=23%  Similarity=0.331  Sum_probs=49.7

Q ss_pred             CCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf             111101013563110146630785305677886541011111113565310111110002234675221
Q gi|255764494|r  315 CKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKD  383 (652)
Q Consensus       315 i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~  383 (652)
                      ++...+.+|..   ++.|.++||.+|.|...+++.+.||.++... +..|+.++|||+.|++=.|-.++
T Consensus       403 ~e~l~~~~G~~---~~~I~~~GG~a~s~lw~Qi~ADv~g~pV~~~-~~~e~~alGaAilAavg~G~~~s  467 (510)
T PTZ00294        403 VLAMKRDSGIE---LNSLRVDGGLTKNKLLMQIQADILGVKLEVP-EMHETTALGAALCAGLAAGVWTS  467 (510)
T ss_pred             HHHHHHHHCCC---CCEEEEECCCHHCHHHHHHHHHHHCCEEEEC-CCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             99999860999---7879997783238999999999659847946-88870899999999998198999


No 43 
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.42  E-value=1.2e-05  Score=61.50  Aligned_cols=192  Identities=18%  Similarity=0.168  Sum_probs=102.5

Q ss_pred             EEEECCCCEEEEEEEECCEEE-EEECCCCCCC-CCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHH
Q ss_conf             998048660699999899559-9756898625-62799994899899667898633308351100206754986872678
Q gi|255764494|r    5 IGIDLGTTNSCVAIMDGKNVR-VIENAEGTRT-TPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTV   82 (652)
Q Consensus         5 iGIDlGtt~s~va~~~~~~~~-ii~n~~g~r~-~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~   82 (652)
                      |=||-|+.++++.+..+..|. |.+|..+++. +.++..-...+.+++|..+..-... |...+   ++           
T Consensus         9 iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~~~~---~~-----------   73 (444)
T COG5277           9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SLLEL---RY-----------   73 (444)
T ss_pred             EEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC-CCCEE---EC-----------
T ss_conf             8994797307840058888606643201332123432224324665457534430577-65103---04-----------


Q ss_pred             HHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCC--CCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             765201986999759982799957958719999999999999999998388--473369853778874025788634421
Q gi|255764494|r   83 AKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGE--TVSKAVITVPAYFNDAQRQATKDAGRI  160 (652)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~--~v~~~VitVP~~f~~~qR~a~~~Aa~~  160 (652)
                                  +..+|.+      ..+...|   .+.+++...- .++..  .-..+++|-|......+|.-+.+.+--
T Consensus        74 ------------p~~~g~i------~~W~~~e---~~w~~~~~~~-~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE  131 (444)
T COG5277          74 ------------PIENGII------LNWDAME---QIWDYTFFNK-GDLLPSPEEHPLLLTEPPLNPPSNREKITELLFE  131 (444)
T ss_pred             ------------CCCCCCC------CCCHHHH---HHHHHHHCCH-HHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ------------6536854------7837899---9998853030-0026887677559852677758899999999998


Q ss_pred             CCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             122222222102478888603445655079987244114543101023146542013322455213447665536787
Q gi|255764494|r  161 AGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT  238 (652)
Q Consensus       161 AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~  238 (652)
                       .+++-.+..-+.|.+..|...+.. .+.+|+|+|.+.++|+=  +-+|.. +.....-..+||++++..|...+...
T Consensus       132 -~~~vp~~~~~~~~~l~~ya~g~~~-~~g~ViD~G~~~t~v~P--V~DG~~-l~~a~~ri~~gG~~it~~l~~lL~~~  204 (444)
T COG5277         132 -TLNVPALYLAIQAVLSLYASGSSD-ETGLVIDSGDSVTHVIP--VVDGIV-LPKAVKRIDIGGRDITDYLKKLLREK  204 (444)
T ss_pred             -HCCCCCEEEEHHHHHHHHHCCCCC-CCEEEEECCCCCEEEEE--EECCCC-CCCCCEEEECCCHHHHHHHHHHHHHC
T ss_conf             -508860575277789998537777-73499976898515676--303641-35530466538578999999998632


No 44 
>PRK04123 ribulokinase; Provisional
Probab=98.34  E-value=3.6e-05  Score=57.84  Aligned_cols=64  Identities=33%  Similarity=0.574  Sum_probs=48.7

Q ss_pred             CCCCHHCCCCCEEEEEEEECCCCC-CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf             111010135631101466307853-05677886541011111113565310111110002234675221
Q gi|255764494|r  316 KKCLQDAGLSPSDIDEVVLVGGMT-RMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKD  383 (652)
Q Consensus       316 ~~~L~~a~~~~~~I~~V~lvGGss-riP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~  383 (652)
                      -++|++.+..   ++.|.++||.+ +.|...+++.++||+++... ...|+.|+|||+.|++-.|-.++
T Consensus       429 ~d~l~~~g~~---~~~i~~~GGga~ks~~w~Qi~ADvlg~pv~~~-~~~e~~alGAA~lAa~a~G~~~d  493 (542)
T PRK04123        429 MECFEDQGVP---VNNVIALGGIARKNPVIMQIYADVLNRPIQVV-ASDQCPALGAAIFAAVAAGAYPD  493 (542)
T ss_pred             HHHHHHCCCC---CCEEEEECCCCCCCHHHHHHHHHHHCCEEEEC-CCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             9999973989---57699967986608899999999769818966-88860799999999998387799


No 45 
>pfam02491 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains. The FtsA protein contains two structurally related actin-like ATPase domains which are also structurally related to the ATPase domains of HSP70 (see PF00012).
Probab=98.29  E-value=1.8e-06  Score=67.64  Aligned_cols=140  Identities=17%  Similarity=0.293  Sum_probs=88.0

Q ss_pred             EEEEEECCCEEEEEEEEECC-CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             79987244114543101023-14654201332245521344766553678764201343024478999999999988541
Q gi|255764494|r  189 VIVFDFGGGTFDVSLLEMGD-GVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIE  267 (652)
Q Consensus       189 vlV~D~Gggt~dvsi~~~~~-~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~  267 (652)
                      ++++|+|++++++++.+... +...++.      +||.++++.++..+                   ..-..+||++|+.
T Consensus         1 v~~IDIG~~~t~~~v~~~~~~~~~~~i~------~Gg~~It~dia~~l-------------------~~~~~~AE~ik~~   55 (163)
T pfam02491         1 VALIDIGSGKTDIAIAKDGSLGYISVIG------VGGGHITDDIAQAL-------------------RTAVEEAERIKIK   55 (163)
T ss_pred             CEEEECCCCCEEEEEEECCCEEEEEEEE------CCCHHHHHHHHHHH-------------------HHHHHHHHHHCCC
T ss_conf             9899938993999999999636999983------08438999999986-------------------2359999864667


Q ss_pred             CCCCCEEEEEECCCCCC---CC---CCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHC------CCCC----EEEEE
Q ss_conf             15565035863044346---78---872126873110000123420000110011110101------3563----11014
Q gi|255764494|r  268 LSSTSQTEINLPFISAN---SA---GAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDA------GLSP----SDIDE  331 (652)
Q Consensus       268 LS~~~~~~i~i~~~~~~---~~---~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a------~~~~----~~I~~  331 (652)
                      ....   -+++......   ..   ...+-...+++.++.+++++-++.++..+.+-+..-      .+..    -..+.
T Consensus        56 ~g~~---~~~~~~~~~~~~~~~~~v~~~~~~~~I~~~~i~~ii~~r~~eIl~~i~~~~~~d~~~~~~p~g~~g~~l~~~~  132 (163)
T pfam02491        56 IGSV---YVSISGGHIKSDNEKGEVPIVDEDREITREDLSRVIEARLEEILHLIPQEYTVDQKGVKDPIGMSGVRLEVGG  132 (163)
T ss_pred             CCEE---EEEECCCCCCCCCCEEEECCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE
T ss_conf             6314---7740466431124304775789983998999999999989879999998860253003363013443131779


Q ss_pred             EEECCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             6630785305677886541011111
Q gi|255764494|r  332 VVLVGGMTRMPKIQQSVQDFFNKSP  356 (652)
Q Consensus       332 V~lvGGssriP~v~~~i~~~fg~~~  356 (652)
                      ++|+||++++|.+.+.+++.||..+
T Consensus       133 ~vltGg~s~l~ni~~~~~~~~~v~v  157 (163)
T pfam02491       133 HVLTGGGSALPNLEELAERAGGVRI  157 (163)
T ss_pred             EEEECCHHHHHCHHHHHHHHCCCEE
T ss_conf             9999756466399999999749622


No 46 
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.24  E-value=0.00025  Score=51.48  Aligned_cols=204  Identities=20%  Similarity=0.283  Sum_probs=114.7

Q ss_pred             HHHHHHHHCCCCC-----EEEEEECCCCCC-------CHH----HHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC-----
Q ss_conf             9999998388473-----369853778874-------025----7886344211222222221024788886034-----
Q gi|255764494|r  124 KETAESFLGETVS-----KAVITVPAYFND-------AQR----QATKDAGRIAGLDVLRIINEPTAAALAYGLD-----  182 (652)
Q Consensus       124 k~~ae~~l~~~v~-----~~VitVP~~f~~-------~qR----~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~-----  182 (652)
                      ...|..|+.-|+.     -.|++-++.=..       +-|    ....+|.++|||++.-+==|.-|.--+|.+-     
T Consensus       108 ~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~  187 (354)
T COG4972         108 ESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFG  187 (354)
T ss_pred             HHHHHHCCCCCHHHCCCCEEEECCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHC
T ss_conf             99876348986353243217834655788627999997105666788999997699745885187899999999998757


Q ss_pred             C-CCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             4-565507998724411454310102314654201332245521344766553678764201343024478999999999
Q gi|255764494|r  183 K-KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAA  261 (652)
Q Consensus       183 ~-~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~  261 (652)
                      . ...-+++|+|+|+..+.++++.=++-.+     .-+..+||+++...+.        +.|+.+...           +
T Consensus       188 ~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~~g~~Qlt~~i~--------r~~~L~~~~-----------a  243 (354)
T COG4972         188 PEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVPVGTDQLTQEIQ--------RAYSLTEEK-----------A  243 (354)
T ss_pred             CCHHHHHHEEEEECCCCEEEEEEECCEEEE-----EEECCCCHHHHHHHHH--------HHHCCCHHH-----------H
T ss_conf             860223320356224533799998790356-----7614574899999999--------985899667-----------6


Q ss_pred             HHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHH--CCCCCEEEEEEEECCCCC
Q ss_conf             988541155650358630443467887212687311000012342000011001111010--135631101466307853
Q gi|255764494|r  262 EKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQD--AGLSPSDIDEVVLVGGMT  339 (652)
Q Consensus       262 e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~--a~~~~~~I~~V~lvGGss  339 (652)
                      +.+|....--+                 |+..        +...+++..+.+-|.+.|+-  +.-...+|+.++|-||+.
T Consensus       244 ~~~k~~~~~P~-----------------~y~~--------~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA  298 (354)
T COG4972         244 EEIKRGGTLPT-----------------DYGS--------EVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGA  298 (354)
T ss_pred             HHHHHCCCCCC-----------------CHHH--------HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
T ss_conf             89872789998-----------------4567--------8888889999999999999987435651454799846961


Q ss_pred             CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf             05677886541011111113565310111110002234
Q gi|255764494|r  340 RMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVL  377 (652)
Q Consensus       340 riP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~l  377 (652)
                      ++-.+.+.+.+..+.+ ..-+||-...+.++...+..+
T Consensus       299 ~l~gL~~~i~qrl~~~-t~vanPf~~~~~~~~v~k~~l  335 (354)
T COG4972         299 SLEGLAAAIQQRLSIP-TEVANPFAYMALNVKVNKGYL  335 (354)
T ss_pred             CHHHHHHHHHHHHCCC-EEEECHHHHHHHHHCCCCCCC
T ss_conf             0663999999873898-076277898765212333651


No 47 
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.20  E-value=0.00011  Score=54.31  Aligned_cols=177  Identities=20%  Similarity=0.266  Sum_probs=95.7

Q ss_pred             CCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEE-----CCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             2222222102478888603445655079987244114543101023146542-----01332245521344766553678
Q gi|255764494|r  163 LDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVK-----ATNGDTFLGGEDFDSCLVEHICD  237 (652)
Q Consensus       163 l~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl-----~~~gd~~lGG~d~D~~l~~~~~~  237 (652)
                      |..-..++|.+|-+.+-...  .+..=.|+|+||  -|.-++.+.+|.+.-.     +.+|    -|         .|++
T Consensus       207 ~~aD~~~~Ei~ah~kgA~~f--~p~~dtIiDIGG--QD~K~i~i~dG~v~df~mN~~CAAG----tG---------rFLE  269 (396)
T COG1924         207 LGADKVVVEISAHAKGARYF--APDVDTVIDIGG--QDSKVIKLEDGKVDDFTMNDKCAAG----TG---------RFLE  269 (396)
T ss_pred             HCCCCCEEEEEHHHHHHHHH--CCCCCEEEEECC--CCEEEEEEECCEEEEEEECCCCCCC----CC---------HHHH
T ss_conf             05774325430367789872--889867998568--5036899718814225764610246----65---------3899


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHH-CCC
Q ss_conf             7642013430244789999999999885411556503586304434678872126873110000123420000110-011
Q gi|255764494|r  238 TFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVE-PCK  316 (652)
Q Consensus       238 ~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~-~i~  316 (652)
                      .+-+.-++++.+       |-+-+++++.--+-+....+..++-.        ++..=--..-|+++..+...+.. ...
T Consensus       270 ~~A~~Lgv~v~E-------~~~~A~~~~~~v~i~S~CaVF~eSev--------i~~~~~G~~~EdI~AGl~~Sv~~~v~~  334 (396)
T COG1924         270 VIARRLGVDVEE-------LGKLALKATPPVKINSRCAVFAESEV--------ISALAEGASPEDILAGLAYSVAENVAE  334 (396)
T ss_pred             HHHHHHCCCHHH-------HHHHHHCCCCCCCCCCEEEEEEHHHH--------HHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999982997899-------99898558887453772078741788--------999986998899999999999999999


Q ss_pred             CCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             11010135631101466307853056778865410111111135653101111100022
Q gi|255764494|r  317 KCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAG  375 (652)
Q Consensus       317 ~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~  375 (652)
                      +.++.-.+.  +  .|+|+||.+..-.+.+.+++++|.++...-+|.-.=|.|||+.|.
T Consensus       335 ~~~~~~~i~--~--~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~  389 (396)
T COG1924         335 KVIKRVDIE--E--PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAK  389 (396)
T ss_pred             HHHHCCCCC--C--CEEEECCCHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHH
T ss_conf             985116888--8--879988402579999999998588153489500333888899875


No 48 
>pfam07520 SrfB Virulence factor SrfB. This family includes homologues of SsrAB is a two-component regulatory system encoded within the Salmonella pathogenicity island SPI-2. Among the products of genes activated by SsrAB within epithelial and macrophage cells is SrfB. Homologues are found in several other proteobacteria.
Probab=98.03  E-value=0.00029  Score=50.98  Aligned_cols=317  Identities=19%  Similarity=0.302  Sum_probs=145.6

Q ss_pred             EECHHHHHHHHHC----CCHHHHHHHHHCCCCCCCHHHHHHHH---------------CCCEEEEECCCCEEEEEEC---
Q ss_conf             9667898633308----35110020675498687267876520---------------1986999759982799957---
Q gi|255764494|r   49 LVGQPAKRQAVTN----PSNTIFAAKRLIGRRFNDSTVAKDAS---------------LVPFKIVEGKGGDAWIEAQ---  106 (652)
Q Consensus        49 ~vG~~A~~~~~~~----p~~ti~~~KrliG~~~~d~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~---  106 (652)
                      -||.+|.+++...    ....+.+-||.+   |++.-.+...+               ..|+.-.-+..|.+.+.+.   
T Consensus       332 RvG~EA~rla~~r~gtEg~tGlSSPKRYL---WD~~~~~~~WRF~~~~~~~~~ep~a~~~p~~~lln~~G~~l~~l~~~~  408 (999)
T pfam07520       332 RVGPEAARLAGRRRGTEGATGLSSPKRYL---WDEEPYAQGWRFNQAHVKSQTEPLATAAPLTNLVNDRGEPLYQLEPED  408 (999)
T ss_pred             EECHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCCCCC
T ss_conf             32789999999744887766778873215---479865788411466677777842436889986162777500158121


Q ss_pred             ------CEEECHHHHHHHHHHHHHHHHHHHHCC--------------CCCEEEEEECCCCCCCHHHHHHHHHHHC-----
Q ss_conf             ------958719999999999999999998388--------------4733698537788740257886344211-----
Q gi|255764494|r  107 ------GKQYSPSQISAIVLQKMKETAESFLGE--------------TVSKAVITVPAYFNDAQRQATKDAGRIA-----  161 (652)
Q Consensus       107 ------~~~~~peei~a~iL~~lk~~ae~~l~~--------------~v~~~VitVP~~f~~~qR~a~~~Aa~~A-----  161 (652)
                            .-.||-.-+..+.|..|...|-.+.++              ....+++|||+...-.+|+.++.-++-|     
T Consensus       409 ~r~p~~~~~ySRSslmtfml~Eil~qAl~qiNspa~R~~~~~~~~PRrLR~iILT~PtAMPk~Er~ifr~r~~~Ai~LvW  488 (999)
T pfam07520       409 ERLPVFSPHYSRSSLMTFMLAEILAQALMQINSPAQRLRMGHADAPRRLRSIILTVPPAMPKPEREIFRQRMQEAIALVW  488 (999)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             45777666514899999999999999998755999883167889873543047879999987999999999999999999


Q ss_pred             ---CCCC--------------------CCC-CCCHHHHHHHH---------H---------CCC---C------CC--CE
Q ss_conf             ---2222--------------------222-21024788886---------0---------344---5------65--50
Q gi|255764494|r  162 ---GLDV--------------------LRI-INEPTAAALAY---------G---------LDK---K------DA--RT  188 (652)
Q Consensus       162 ---Gl~v--------------------~~l-i~EptAAal~Y---------~---------~~~---~------~~--~~  188 (652)
                         |...                    ++. -+|-|+.=+-|         |         +-+   .      ..  -+
T Consensus       489 k~lGw~~~~~~~~~~~~~~~~~~p~P~v~~eWDEATC~QlVyLYnE~~~~fgG~~e~fF~~~~Rp~~~~~~~~~~~~slr  568 (999)
T pfam07520       489 KAMGWHPSDEDFEDAKGREQSRVPLPEVQVEWDEATCGQLVYLYNETQVNFGGRTEEFFAALARPDRPPAPGAVPGRSLR  568 (999)
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCEEE
T ss_conf             96189878874002333444458898348897325630123211677887099899999984588888887668887168


Q ss_pred             EEEEEECCCEEEEEEEEEC--CC---EEEE----ECCCCCCCCCCHHHHHHHH-HHHHHHHHHH---CCC----------
Q ss_conf             7998724411454310102--31---4654----2013322455213447665-5367876420---134----------
Q gi|255764494|r  189 VIVFDFGGGTFDVSLLEMG--DG---VFEV----KATNGDTFLGGEDFDSCLV-EHICDTFKKE---NGI----------  245 (652)
Q Consensus       189 vlV~D~Gggt~dvsi~~~~--~~---~~~v----l~~~gd~~lGG~d~D~~l~-~~~~~~~~~~---~~~----------  245 (652)
                      |.=+|+||||+|..|....  .|   ...+    +-..|- .+-|+|+=..++ .++...++..   .++          
T Consensus       569 iASIDIGGGTTDL~It~Y~ld~g~G~nv~I~P~q~FReGF-kvAGDDiL~~vI~~~VlPal~~aL~~aG~~~~~~ll~~L  647 (999)
T pfam07520       569 VASIDIGGGTTDLVITDYYLDDGVGANVKIIPDQLFREGF-KVAGDDILLDVIQRLVLPALQAALRKAGVTDPRSLLSKL  647 (999)
T ss_pred             EEEEEECCCCCEEEEEEEEECCCCCCCEEECCCCEECCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             9988617986212688887236777713756621421011-014579999999998379999999983555899999997


Q ss_pred             ---CHHHHH-HHH-------------HHHHHHHHHHHHHCCCCCEEEEEE--------------CCCCCC----CCCCC-
Q ss_conf             ---302447-899-------------999999998854115565035863--------------044346----78872-
Q gi|255764494|r  246 ---DLKQDT-LAL-------------QRLKEAAEKAKIELSSTSQTEINL--------------PFISAN----SAGAQ-  289 (652)
Q Consensus       246 ---d~~~~~-~a~-------------~rL~~~~e~aK~~LS~~~~~~i~i--------------~~~~~~----~~~g~-  289 (652)
                         +-..+. +.+             .+++.+||..-..- .....+..+              +++...    ..+.. 
T Consensus       648 FG~dg~~~~~~~lRqq~~lQv~~Pl~~~iL~~yE~~dp~~-~~~~~~~~f~dll~~~~Pt~~vl~yv~~~~~~~~~g~~~  726 (999)
T pfam07520       648 FGGEGRSDQEKILRQQFTLQVFMPLGLAILSAYENYDPLD-GQAEIHLTFGDLLEREMPTENVLDYINEEVRRGPAGAPA  726 (999)
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHEEHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             2878710799999999998999999999999864389445-552011058764554488489999998887515688888


Q ss_pred             ----EEEEEECCCCCCCCCCC---CHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCC----
Q ss_conf             ----12687311000012342---0000110011110101356311014663078530567788654101111111----
Q gi|255764494|r  290 ----HLNMKLTRAQFERLVNH---LIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSK----  358 (652)
Q Consensus       290 ----d~~~~itR~~fe~l~~~---l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~----  358 (652)
                          ++...|...++...+-.   .+.+.+..+-++     +...+.|-++|.|-.||.|.||.++..+...++.+    
T Consensus       727 Fdi~dvpl~i~~~~l~~~fl~~r~~i~~~L~~lcEv-----v~~y~CDVlLLTGRPSrlPgv~al~r~~~pvpp~Riv~l  801 (999)
T pfam07520       727 FSILDVPLEIDLKALHEAFLSGRMNICDVLRALCEV-----VHLYDCDVLLLTGRPSRLPGVQALFRHLQPLPPDRIVPL  801 (999)
T ss_pred             CCEECCCEECCHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEC
T ss_conf             521205134149999999871710378999999999-----998589989966986667789999997379994307772


Q ss_pred             ----------------CCCCCCHHHHHHHHCCC
Q ss_conf             ----------------35653101111100022
Q gi|255764494|r  359 ----------------GVNPDEVVAMGAAIQAG  375 (652)
Q Consensus       359 ----------------~~npdeaVa~GAA~~a~  375 (652)
                                      --||-..||.||.+.+-
T Consensus       802 ~~Y~tg~WYPF~~~grI~dPKtTaaVGAMLc~L  834 (999)
T pfam07520       802 HGYRTGNWYPFRKQGRIDDPKTTAAVGAMLCLL  834 (999)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             771217704688888769961779999999998


No 49 
>KOG0676 consensus
Probab=98.02  E-value=0.00043  Score=49.71  Aligned_cols=280  Identities=20%  Similarity=0.281  Sum_probs=131.0

Q ss_pred             CCEEEEECCCCEEEEEEEECCEE-EEEECCCCC-CCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf             81699804866069999989955-997568986-2562799994899899667898633308351100206754986872
Q gi|255764494|r    2 SKVIGIDLGTTNSCVAIMDGKNV-RVIENAEGT-RTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFND   79 (652)
Q Consensus         2 s~viGIDlGtt~s~va~~~~~~~-~ii~n~~g~-r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d   79 (652)
                      +..|=||.|+.++++++.....| -++++..|+ |..++.++.... +.++|.+|...-      ++   +         
T Consensus         7 ~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~-~~~vg~~a~~~~------~l---~---------   67 (372)
T KOG0676           7 IQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQK-DTYVGDEAESKR------TL---K---------   67 (372)
T ss_pred             CCEEEEECCCCEEECCCCCCCCCCEECCEECCCCCCCCCCCCCCCC-CCCCCHHHHCCC------CC---C---------
T ss_conf             6349997898527615678989754652213554445666664556-541352441432------23---5---------


Q ss_pred             HHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCC--CCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf             678765201986999759982799957958719999999999999999998388--473369853778874025788634
Q gi|255764494|r   80 STVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGE--TVSKAVITVPAYFNDAQRQATKDA  157 (652)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~--~v~~~VitVP~~f~~~qR~a~~~A  157 (652)
                               +|.     ++|.   -.+...+  +.+    ..++.   .+.+..  .-..+++|-|+.+..+-|+-+.+.
T Consensus        68 ---------~Pi-----e~Gi---v~~wd~m--e~i----w~~if---~~~L~~~Pee~pvllte~pl~p~~nREk~tqi  121 (372)
T KOG0676          68 ---------YPI-----ERGI---VTDWDDM--EKI----WHHLF---YSELLVAPEEHPVLLTEPPLNPKANREKLTQI  121 (372)
T ss_pred             ---------CCC-----CCCC---CCCHHHH--HHH----HHHHH---HHHHCCCCCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf             ---------864-----2560---2164889--999----99999---87642386648647543788835768888877


Q ss_pred             HHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             42112222222210247888860344565507998724411454310102314654201332245521344766553678
Q gi|255764494|r  158 GRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICD  237 (652)
Q Consensus       158 a~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~  237 (652)
                      - .--|+|-.+.-.- .|.+ |..   .-.+=+|+|+|.|-+++  +-+-+|.. +-.......|||+|+..-|...+.+
T Consensus       122 ~-FE~fnvpa~yva~-qavl-ya~---g~ttG~VvD~G~gvt~~--vPI~eG~~-lp~ai~~ldl~G~dlt~~l~~~L~~  192 (372)
T KOG0676         122 M-FETFNVPALYVAI-QAVL-YAS---GRTTGLVVDSGDGVTHV--VPIYEGYA-LPHAILRLDLAGRDLTDYLLKQLRK  192 (372)
T ss_pred             H-HHHCCCCHHHHHH-HHHH-HHC---CCEEEEEEECCCCCEEE--EECCCCCC-CCHHHEEECCCCHHHHHHHHHHHHH
T ss_conf             5-5436863658988-7899-771---67058999868982135--50325631-5203403042112567999999975


Q ss_pred             HHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHCCC------------CCEEEEEECCCCCCCCCCCEEEEEECCCCCC---
Q ss_conf             764201343024-478999999999988541155------------6503586304434678872126873110000---
Q gi|255764494|r  238 TFKKENGIDLKQ-DTLALQRLKEAAEKAKIELSS------------TSQTEINLPFISANSAGAQHLNMKLTRAQFE---  301 (652)
Q Consensus       238 ~~~~~~~~d~~~-~~~a~~rL~~~~e~aK~~LS~------------~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe---  301 (652)
                           .+..+.. ..+..      ++.+|+.|+.            +.+..+...  +... +|.-  +.+.-+.|.   
T Consensus       193 -----~g~s~~~~~~~eI------v~diKeklCyvald~~~e~~~~~~~~~l~~~--y~lP-Dg~~--i~i~~erf~~pE  256 (372)
T KOG0676         193 -----RGYSFTTSAEFEI------VRDIKEKLCYVALDFEEEEETANTSSSLESS--YELP-DGQK--ITIGNERFRCPE  256 (372)
T ss_pred             -----CCCCCCCCCHHHH------HHHHHHHCCCCCCCCCHHHCCCCCCCCCCCC--CCCC-CCCE--EECCCCCCCCCH
T ss_conf             -----0656423337999------8876765001202551333035665423444--1189-9987--855873223622


Q ss_pred             CCCCC---------CHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf             12342---------00001100111101013563110146630785305677886541011
Q gi|255764494|r  302 RLVNH---------LIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN  353 (652)
Q Consensus       302 ~l~~~---------l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg  353 (652)
                      -+.+|         +-+.+...|.++  +..+.+.-...++|+||+|-+|.+.+.+.+...
T Consensus       257 ~lFqP~~~g~e~~gi~~~~~~sI~kc--d~d~rk~L~~nivLsGGtT~~pGl~~Rl~kEl~  315 (372)
T KOG0676         257 VLFQPSLLGMESPGIHELTVNSIMKC--DIDLRKDLYENIVLSGGTTMFPGLADRLQKELQ  315 (372)
T ss_pred             HCCCHHHCCCCCCCHHHHHHHHHHHC--CHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHH
T ss_conf             01785344887786379999998857--854778878536896773454328999998776


No 50 
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=98.01  E-value=0.00046  Score=49.46  Aligned_cols=51  Identities=27%  Similarity=0.250  Sum_probs=38.0

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf             1014663078530567788654101111111356531011111000223467
Q gi|255764494|r  328 DIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG  379 (652)
Q Consensus       328 ~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~  379 (652)
                      .++.|.++||++|.|...+++.+.||.++.... ..|+-+.|+|+.++...+
T Consensus       401 ~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~-~~e~~a~g~A~~~~~~~~  451 (502)
T COG1070         401 PPSRVRVVGGGARSPLWLQILADALGLPVVVPE-VEEAGALGGAALAAAALG  451 (502)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCEEECC-CCCHHHHHHHHHHHHHHC
T ss_conf             977799977631579999999998689667247-510679999999999706


No 51 
>TIGR01312 XylB xylulokinase; InterPro: IPR006000   The ability to metabolise xylose, one of the most abundant sugars in nature, is dependent on its conversion to xylulose-5-phosphate, which then enters the non-oxidative pentose phosphate pathway . Xylulose-5-phosphate is produced from xylose by the sequential action of two enzymes; xylose isomerase, which converts xylose to xylulose, and xylulokinase, which subsequently phosphorylates xylulose.   This entry represents bacterial xylulokinase. In addition to its role in xylose metabolism this enzyme may also have a biosynthetic role. 1-deoxy-D-xylulose 5-phosphate serves as a precursor for the biosynthesis of the vitamins thiamine and pyridoxal and for the formation of isopentenyl pyrophosphate and dimethylallyl pyrophosphate via the nonmevalonate pathway of terpenoid biosynthesis. Xylulokinase catalyses the phosphorylation of 1-deoxy-D-xylulose at the hydroxy group of C-5 . This reaction therefore constitutes a potential salvage pathway for the generation of 1-deoxy-D-xylulose 5-phosphate from exogenous or endogenous 1-deoxy-D-xylulose as starting material for the biosynthesis of terpenoids, thiamine and pyridoxal. ; GO: 0004856 xylulokinase activity, 0005997 xylulose metabolic process.
Probab=97.79  E-value=1.1e-05  Score=61.76  Aligned_cols=115  Identities=29%  Similarity=0.412  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-------CCC--EEE-EEECCCCCCCCCCCCHHHHHHCCCC---CCHH
Q ss_conf             99999999885411556503586304434678-------872--126-8731100001234200001100111---1010
Q gi|255764494|r  255 QRLKEAAEKAKIELSSTSQTEINLPFISANSA-------GAQ--HLN-MKLTRAQFERLVNHLIQKTVEPCKK---CLQD  321 (652)
Q Consensus       255 ~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~-------~g~--d~~-~~itR~~fe~l~~~l~~~~~~~i~~---~L~~  321 (652)
                      ..|...++++..- |   .--+-+|+|.=.-.       .|.  =++ ..-||.+|-.   -.++-+.=-++.   +|++
T Consensus       321 ~~l~~~~~~~~~G-a---~Gv~flPYL~GERTP~~DP~aRGsf~GL~~~~~~r~~l~R---Av~EG~~F~l~dsl~~~~~  393 (494)
T TIGR01312       321 EELNEEAEKSPPG-A---EGVIFLPYLNGERTPHLDPQARGSFIGLTSANTTRADLTR---AVLEGVTFALRDSLDILRE  393 (494)
T ss_pred             HHHHHHHHHCCCC-C---CCCEECCCCCCCCCCCCCCCCCCHHEEHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_conf             8999997527778-8---9845333026577889873421124005543148789999---9999999999999999998


Q ss_pred             -CCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf             -1356311014663078530567788654101111111356531011111000223467
Q gi|255764494|r  322 -AGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG  379 (652)
Q Consensus       322 -a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~  379 (652)
                       .+++   |..|.||||++|-|.-++++.++||.++...-+.+|.+|+|||+||++-.+
T Consensus       394 ~~g~~---~~~i~lIGGGakS~~W~Q~~ADI~g~~v~~~~g~~eg~ALGAA~lA~~~~~  449 (494)
T TIGR01312       394 LNGLP---INEIRLIGGGAKSPVWRQILADIFGLPVVVPEGGEEGAALGAAILAAWGLG  449 (494)
T ss_pred             HCCCC---EEEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf             15994---005888705644678999999981881575167011001799999998488


No 52 
>PRK13317 pantothenate kinase; Provisional
Probab=97.70  E-value=0.00052  Score=49.06  Aligned_cols=51  Identities=20%  Similarity=0.263  Sum_probs=39.4

Q ss_pred             CCEEEEEEEECCCC-CCHHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             63110146630785-30567788654101---11111135653101111100022
Q gi|255764494|r  325 SPSDIDEVVLVGGM-TRMPKIQQSVQDFF---NKSPSKGVNPDEVVAMGAAIQAG  375 (652)
Q Consensus       325 ~~~~I~~V~lvGGs-sriP~v~~~i~~~f---g~~~~~~~npdeaVa~GAA~~a~  375 (652)
                      ...++..|+++||. +..|.+++.+.++.   +.++...-|+..+.|+||+++|.
T Consensus       218 ~~~~i~~i~f~G~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~y~gAlGA~L~a~  272 (273)
T PRK13317        218 EEKNTENIVYIGSTLCNNALLQEVIEDYTVLRGCTPIFLENGGFSGAIGALLLAT  272 (273)
T ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCC
T ss_conf             8749876999898666887899999999986696488616376869999987126


No 53 
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.61  E-value=0.00064  Score=48.42  Aligned_cols=173  Identities=15%  Similarity=0.200  Sum_probs=88.6

Q ss_pred             CCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEE-CCCEEEE-----ECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             221024788886034456550799872441145431010-2314654-----2013322455213447665536787642
Q gi|255764494|r  168 IINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEM-GDGVFEV-----KATNGDTFLGGEDFDSCLVEHICDTFKK  241 (652)
Q Consensus       168 li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~-~~~~~~v-----l~~~gd~~lGG~d~D~~l~~~~~~~~~~  241 (652)
                      .|+|-||-|.+- .+-..+..--|+|+||=  |.=++.+ .+|.+.-     .+.+|.    |+         |++.+-+
T Consensus       107 ~itEIt~Ha~GA-~~l~~~~vrTIiDIGGQ--DsK~I~ld~~G~V~dF~MNdkCAAGT----Gr---------FLE~~A~  170 (293)
T TIGR03192       107 AITEIACHARGA-NYMGGNAVRTILDMGGQ--DCKAIHCDEKGKVTNFLMNDKCAAGT----GR---------GMEVISD  170 (293)
T ss_pred             CEEEEHHHHHHH-HHHCCCCCCEEEEECCC--CEEEEEECCCCCEEEEEECCCCCCCC----CH---------HHHHHHH
T ss_conf             567706789999-97478977489993686--04899985899587787256113455----53---------9999999


Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHH-HHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCC-CCCCCCCCHHHHHHCCCCCC
Q ss_conf             013430244789999999999885-4115565035863044346788721268731100-00123420000110011110
Q gi|255764494|r  242 ENGIDLKQDTLALQRLKEAAEKAK-IELSSTSQTEINLPFISANSAGAQHLNMKLTRAQ-FERLVNHLIQKTVEPCKKCL  319 (652)
Q Consensus       242 ~~~~d~~~~~~a~~rL~~~~e~aK-~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~-fe~l~~~l~~~~~~~i~~~L  319 (652)
                      .-++++.+    +..+   +-+++ +-.+-+....+..++-.-.     .+..-.++++ ..-++..+..|+..    .+
T Consensus       171 ~L~i~l~e----l~~~---a~~~~~~p~~isS~CtVFaESevis-----~l~~G~~~edI~aGl~~sia~rv~~----l~  234 (293)
T TIGR03192       171 LMQIPIAD----LGPR---SFDVETEPEAVSSICVVFAKSEALG-----LLKAGYTKNMVIAAYCQAMAERVVS----LL  234 (293)
T ss_pred             HCCCCHHH----HHHH---HHHCCCCCCCCCCEEEEEEEHHHHH-----HHHCCCCHHHHHHHHHHHHHHHHHH----HH
T ss_conf             80999999----9999---8754589866377157886176999-----9986998999999999999999999----97


Q ss_pred             HHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             10135631101466307853056778865410111-1111356531011111000223
Q gi|255764494|r  320 QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK-SPSKGVNPDEVVAMGAAIQAGV  376 (652)
Q Consensus       320 ~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~-~~~~~~npdeaVa~GAA~~a~~  376 (652)
                      ++.++.    ..|+|.||.++.|.|.+.+++.+|. .+....+|..+=|+|||++|+-
T Consensus       235 ~r~~~~----~~iv~tGGva~N~~vv~ale~~Lg~~~i~~~~~~q~~GAlGAAL~a~~  288 (293)
T TIGR03192       235 ERIGVE----EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT  288 (293)
T ss_pred             HHCCCC----CCEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf             633889----988998976054899999999869965737998327669999999899


No 54 
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=97.51  E-value=0.008  Score=40.10  Aligned_cols=215  Identities=21%  Similarity=0.241  Sum_probs=107.9

Q ss_pred             EEEEEECCCEEEEEEEEEC---CCE----EEEECCCCCCCCCCHHHHHHHHHHHHHH---------HHHHCCCCHHHHHH
Q ss_conf             7998724411454310102---314----6542013322455213447665536787---------64201343024478
Q gi|255764494|r  189 VIVFDFGGGTFDVSLLEMG---DGV----FEVKATNGDTFLGGEDFDSCLVEHICDT---------FKKENGIDLKQDTL  252 (652)
Q Consensus       189 vlV~D~Gggt~dvsi~~~~---~~~----~~vl~~~gd~~lGG~d~D~~l~~~~~~~---------~~~~~~~d~~~~~~  252 (652)
                      -|++=+|-+|+++.+-.-.   .|+    ...+--+.-..=||..=.-.|.+||.+.         ...+++.++..  .
T Consensus       270 ~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~--~  347 (544)
T COG1069         270 SLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYE--S  347 (544)
T ss_pred             EEEEEEECCEEEEEECCCCEECCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHH--H
T ss_conf             27999605558997067760158640156543272466640563036589999998387653122214023457889--9


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC--CCCEEEEEECCC----CCCCCCCCCHHHH------HHCCCCCCH
Q ss_conf             9999999999885411556503586304434678--872126873110----0001234200001------100111101
Q gi|255764494|r  253 ALQRLKEAAEKAKIELSSTSQTEINLPFISANSA--GAQHLNMKLTRA----QFERLVNHLIQKT------VEPCKKCLQ  320 (652)
Q Consensus       253 a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~--~g~d~~~~itR~----~fe~l~~~l~~~~------~~~i~~~L~  320 (652)
                      -..++..-+++++...+...- -+-++.+.-+-.  -.-++.-.|+-.    .++.||.-+..-+      ...|-++++
T Consensus       348 ~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~  426 (544)
T COG1069         348 LAQRLELLTEAAAAIPPLASG-LHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFE  426 (544)
T ss_pred             HHHHHHHHHHHHHCCCCCCCC-CEECCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999998656516766678-5763532578587789660357855635788077899999999999866999999999


Q ss_pred             HCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCCCC
Q ss_conf             01356311014663078530567788654101111111356531011111000223467522100002356653222334
Q gi|255764494|r  321 DAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLG  400 (652)
Q Consensus       321 ~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~~dv~p~slgie~~~  400 (652)
                      +.|+.   |+.+...||-.+-|.+.+++.+..|+++... ..|+|+++|+|+.|+.-.+...++.            ...
T Consensus       427 ~~g~~---Id~l~~sGG~~KN~llmql~aDvtg~~v~i~-~s~~a~llGsAm~~avAag~~~dl~------------~A~  490 (544)
T COG1069         427 DQGIA---IDTLFASGGIRKNPLLMQLYADVTGRPVVIP-ASDQAVLLGAAMFAAVAAGVHPDLP------------AAA  490 (544)
T ss_pred             HCCCE---EEEEEECCCCCCCHHHHHHHHHHCCCEEEEE-CCCCHHHHHHHHHHHHHCCCCCCHH------------HHH
T ss_conf             76970---1478871773238999999877409757852-6642025678999998705574469------------999


Q ss_pred             CEEEEEECCCCCCCHHHHHHHH
Q ss_conf             2024663389811024566545
Q gi|255764494|r  401 GVFTSIIDRNSTIPTKKSQVFS  422 (652)
Q Consensus       401 ~~~~~ii~~~~~iP~~k~~~f~  422 (652)
                      ..|.....+..+-|..+...|.
T Consensus       491 ~aMs~~~~~~~~~~~~~~~~y~  512 (544)
T COG1069         491 QAMSSAVEKTLPPPPERAARYE  512 (544)
T ss_pred             HHHCCCCCEECCCHHHHHHHHH
T ss_conf             9840554401698699999999


No 55 
>KOG0797 consensus
Probab=97.46  E-value=0.0019  Score=44.75  Aligned_cols=156  Identities=19%  Similarity=0.221  Sum_probs=91.5

Q ss_pred             CEEECHHHHHHHHHHHHHHHHHHHHCCCCC-----EEEEEECCCCCCCHHHHHHH-HHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             958719999999999999999998388473-----36985377887402578863-442112222222210247888860
Q gi|255764494|r  107 GKQYSPSQISAIVLQKMKETAESFLGETVS-----KAVITVPAYFNDAQRQATKD-AGRIAGLDVLRIINEPTAAALAYG  180 (652)
Q Consensus       107 ~~~~~peei~a~iL~~lk~~ae~~l~~~v~-----~~VitVP~~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAal~Y~  180 (652)
                      ...+|..++.+.+-+-+.-.-+..|+-+++     .+|+-||--|.-..-+..+. --.--||+-..++.|..||.+.-|
T Consensus       194 ~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaG  273 (618)
T KOG0797         194 PPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAG  273 (618)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCC
T ss_conf             85131999999999999999987617885673544699981532558899999999998725663798712467775277


Q ss_pred             CCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             344565507998724411454310102314654201332245521344766553678-7642013430244789999999
Q gi|255764494|r  181 LDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICD-TFKKENGIDLKQDTLALQRLKE  259 (652)
Q Consensus       181 ~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~-~~~~~~~~d~~~~~~a~~rL~~  259 (652)
                      +.     .-+|+|+|+-++.|++  +++|+.. ..+.=-...||+|++++++-.+.. .|--+ ..++.. +.-+. |  
T Consensus       274 ls-----s~CVVdiGAQkTsIaC--VEdGvs~-~ntri~L~YGGdDitr~f~~ll~rs~FPy~-d~~v~~-~~d~l-L--  340 (618)
T KOG0797         274 LS-----SACVVDIGAQKTSIAC--VEDGVSL-PNTRIILPYGGDDITRCFLWLLRRSGFPYQ-DCDVLA-PIDWL-L--  340 (618)
T ss_pred             CC-----CEEEEECCCCCEEEEE--EECCCCC-CCCEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCCCC-CCCHH-H--
T ss_conf             65-----3047870575114888--5257556-675377336872499999999986699840-244366-11379-9--


Q ss_pred             HHHHHHHHCCCCCEEEE
Q ss_conf             99988541155650358
Q gi|255764494|r  260 AAEKAKIELSSTSQTEI  276 (652)
Q Consensus       260 ~~e~aK~~LS~~~~~~i  276 (652)
                       ++.+|+....-..+..
T Consensus       341 -l~~LKe~Fc~l~~a~~  356 (618)
T KOG0797         341 -LNQLKEKFCHLRAAEL  356 (618)
T ss_pred             -HHHHHHHHCCCCHHHH
T ss_conf             -9999887446337665


No 56 
>pfam06277 EutA Ethanolamine utilisation protein EutA. This family consists of several bacterial EutA ethanolamine utilisation proteins. The EutA protein is thought to protect the lyase (EutBC) from inhibition by CNB12.
Probab=97.43  E-value=0.0034  Score=42.91  Aligned_cols=41  Identities=34%  Similarity=0.515  Sum_probs=29.4

Q ss_pred             CCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHH
Q ss_conf             4456550799872441145431010231465420133224552134
Q gi|255764494|r  182 DKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDF  227 (652)
Q Consensus       182 ~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~  227 (652)
                      .+.....|+=+|+||||+..++  |.+|.  |++|+. -++||+-+
T Consensus       138 S~~~~~~VlNiDIGGGTtn~Al--f~~G~--v~~t~c-l~IGGRLi  178 (473)
T pfam06277       138 SKEHHTTVLNIDIGGGTTNLAL--FENGE--VIDTAC-LDIGGRLI  178 (473)
T ss_pred             HHCCCCEEEEEEECCCCEEEEE--EECCE--EEEEEE-EEECCEEE
T ss_conf             2324874899886688305799--85888--989875-70534799


No 57 
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.39  E-value=0.0066  Score=40.72  Aligned_cols=40  Identities=33%  Similarity=0.439  Sum_probs=28.5

Q ss_pred             CCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHH
Q ss_conf             445655079987244114543101023146542013322455213
Q gi|255764494|r  182 DKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGED  226 (652)
Q Consensus       182 ~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d  226 (652)
                      .+.....|+=+|+||||+..+++  .+|.  |.+|+. -++||+-
T Consensus       141 S~~~~~~VlNiDIGGGTtn~Alf--~~G~--v~~t~c-l~IGGRL  180 (471)
T PRK10719        141 SKERHCRVLNIDIGGGTSNYALF--DAGE--VIDTAC-LNVGGRL  180 (471)
T ss_pred             HHCCCCEEEEEEECCCCEEEEEE--ECCE--EEEEEE-EEECCEE
T ss_conf             23348738998866883058998--4888--988775-7034469


No 58 
>pfam08841 DDR Diol dehydratase reactivase ATPase-like domain. Diol dehydratase (DDH, EC:4.2.1.28) and its isofunctional homologue glycerol dehydratase (GDH, EC.4.2.1.30) are enzymes which catalyse the conversion of glycerol 1,2-propanediol, and 1,2-ethanediol to aldehydes. These reactions require coenzyme B12. Cleavage of the Co-C bond of coenzyme B12 by substrates or coenzyme analogues results in inactivation during which coenzyme B12 remains tightly bound to the apoenzyme. This family comprises of the large subunit of the diol dehydratase and glycerol dehydratase reactivating factors whose function is to reactivate the holoenzyme by exchange of a damaged cofactor for intact coenzyme.
Probab=97.15  E-value=0.00046  Score=49.48  Aligned_cols=185  Identities=24%  Similarity=0.253  Sum_probs=83.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHCC-CCCCCEEEEEEECCCEEEEEEEEECCCEEEE-ECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             222222221024788886034-4565507998724411454310102314654-20133224552134476655367876
Q gi|255764494|r  162 GLDVLRIINEPTAAALAYGLD-KKDARTVIVFDFGGGTFDVSLLEMGDGVFEV-KATNGDTFLGGEDFDSCLVEHICDTF  239 (652)
Q Consensus       162 Gl~v~~li~EptAAal~Y~~~-~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~v-l~~~gd~~lGG~d~D~~l~~~~~~~~  239 (652)
                      |.++.-.=-|+.+|++.- +. ...+.-..++|+||||+|.|++.-++.+.-+ +|-+      |+-++..|.       
T Consensus       109 g~~v~igg~EaemAi~GA-lTTPGt~~plaIlDlGaGStDasii~~~g~v~a~HlAGA------G~mVTmlI~-------  174 (332)
T pfam08841       109 GVPVEIGGVEAEAAILGA-LTTPGTPKPLAILDLGAGSTDASIINAEGTVTATHLAGA------GEMVTMLIN-------  174 (332)
T ss_pred             CCCEEECCCCHHHHHHHC-CCCCCCCCCEEEEECCCCCCCHHHHCCCCCEEEEEECCC------CHHHHHHHH-------
T ss_conf             982697450588887403-369899998389964898533888288984899974386------137599998-------


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC-------CCCCCCCCCCEEE--EEECCCCCCCCCCC-CHH
Q ss_conf             4201343024478999999999988541155650358630-------4434678872126--87311000012342-000
Q gi|255764494|r  240 KKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLP-------FISANSAGAQHLN--MKLTRAQFERLVNH-LIQ  309 (652)
Q Consensus       240 ~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~-------~~~~~~~~g~d~~--~~itR~~fe~l~~~-l~~  309 (652)
                       ..-+++    .+.+      +|..|+-=-..-+..+++-       ++.+ ..+..-|-  +.++-+.+.-+-.. -++
T Consensus       175 -seLGl~----d~~L------AE~IKkyPlaKVEslf~irhEDG~v~Ff~~-pl~p~~faRvv~~k~~~lvPi~~~~~~E  242 (332)
T pfam08841       175 -SELGLE----DRAL------AEDIKKYPLAKVESLFHIRHEDGRVQFFEE-PLPPSVFARVVILKEDGLVPLDGDLSIE  242 (332)
T ss_pred             -HHHCCC----CHHH------HHHHHHCCHHHHCCCEEEEECCCCEEEECC-CCCHHHHEEEEEECCCCEEECCCCCCHH
T ss_conf             -864899----5788------988743624542344268852772697269-8996792578996279514169854489


Q ss_pred             HHH------------HCCCCCCHHCC--CCCEEEEEEEECCCCCCHHHHHHHHHHCC-------CC-CCCCCCCCCCHHH
Q ss_conf             011------------00111101013--56311014663078530567788654101-------11-1111356531011
Q gi|255764494|r  310 KTV------------EPCKKCLQDAG--LSPSDIDEVVLVGGMTRMPKIQQSVQDFF-------NK-SPSKGVNPDEVVA  367 (652)
Q Consensus       310 ~~~------------~~i~~~L~~a~--~~~~~I~~V~lvGGssriP~v~~~i~~~f-------g~-~~~~~~npdeaVa  367 (652)
                      ++.            .-+-++|+...  -+..+|+.|+|||||+.=--|-+++.+.+       |+ .+.-..-|--|||
T Consensus       243 kir~vRr~aK~kVfvtNa~RaL~~vsP~gnir~i~fVVLvGGsALDfEip~~vtdaLs~y~vVaGrgNIrG~eGPRnAVA  322 (332)
T pfam08841       243 KIKSVRRSAKERVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQLVTEALSHYGVVAGRGNIRGVEGPRNAVA  322 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHH
T ss_conf             99999998645645998999998429888867787599955714422378999998750752343256456767368899


Q ss_pred             HHHHH
Q ss_conf             11100
Q gi|255764494|r  368 MGAAI  372 (652)
Q Consensus       368 ~GAA~  372 (652)
                      .|-.+
T Consensus       323 tGLvl  327 (332)
T pfam08841       323 TGLVL  327 (332)
T ss_pred             HHHHH
T ss_conf             99898


No 59 
>pfam02782 FGGY_C FGGY family of carbohydrate kinases, C-terminal domain. This domain adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain.
Probab=97.12  E-value=0.00042  Score=49.76  Aligned_cols=55  Identities=33%  Similarity=0.517  Sum_probs=44.4

Q ss_pred             CCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             10101356311014663078530567788654101111111356531011111000223
Q gi|255764494|r  318 CLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGV  376 (652)
Q Consensus       318 ~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~  376 (652)
                      .|++.+.   .++.|.++||.+|-|...+++.+.+|+++... .+.|+.|+|||+.|++
T Consensus       137 ~l~~~g~---~~~~i~~~GG~sks~~~~Qi~Advlg~~V~~~-~~~e~~alGaA~lA~~  191 (193)
T pfam02782       137 ALAELGA---PIDRIIASGGGSRNPLLLQLLADALGRPVEVP-EPAEATALGAALLAAV  191 (193)
T ss_pred             HHHHHCC---CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEC-CCCCHHHHHHHHHHHH
T ss_conf             9997289---86415875763017899999999969955817-9973689999999973


No 60 
>pfam01968 Hydantoinase_A Hydantoinase/oxoprolinase. This family includes the enzymes hydantoinase and oxoprolinase EC:3.5.2.9. Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds.
Probab=97.08  E-value=0.0015  Score=45.54  Aligned_cols=62  Identities=21%  Similarity=0.314  Sum_probs=43.2

Q ss_pred             HHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHH
Q ss_conf             00011001111010135631101466307853056778865410111-111135653101111100
Q gi|255764494|r  308 IQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK-SPSKGVNPDEVVAMGAAI  372 (652)
Q Consensus       308 ~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~-~~~~~~npdeaVa~GAA~  372 (652)
                      .++..+.|++.+...|+++.+. .++.+||+.  |.....+.+.+|. .+.....|.-+-|.|||+
T Consensus       216 ~~~m~~ai~~~~~~~g~dp~~~-~lv~~GGag--~~~~~~la~~lg~~~vi~P~~~~v~sA~G~a~  278 (285)
T pfam01968       216 NETMADAVRLLSVERGLDPRDF-PLVVFGGAG--PLHAPELAEELGIKEVIPPPYPGVANAVGAAL  278 (285)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCC-EEEEECCCH--HHHHHHHHHHCCCCEEECCCCCCCHHHHHHHH
T ss_conf             9999999999999849997787-899987829--99999999985999897689987051772744


No 61 
>pfam01869 BcrAD_BadFG BadF/BadG/BcrA/BcrD ATPase family. This family includes the BadF and BadG proteins, which are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase. A member from Aquifex aeolicus contains two copies of this region suggesting that the family may structurally dimerize. This family appears to be related to pfam00370.
Probab=97.04  E-value=0.02  Score=37.13  Aligned_cols=70  Identities=23%  Similarity=0.348  Sum_probs=44.5

Q ss_pred             CCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHHH
Q ss_conf             0000123420000110011110101356311014663078530567788654101-----11111135653101111100
Q gi|255764494|r  298 AQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFF-----NKSPSKGVNPDEVVAMGAAI  372 (652)
Q Consensus       298 ~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~f-----g~~~~~~~npdeaVa~GAA~  372 (652)
                      +-++.++..+...+...+++    -+..+   ..|+|+||-.+.+.+.+.+++.+     +.++....+|....|.|||+
T Consensus       214 ~Il~~~~~~la~~~~~~~~~----l~~~~---~~vvl~GGv~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~A~GAal  286 (288)
T pfam01869       214 DILAGAAESIALRVAALIKR----LGPVP---DQVVLTGGVAKNEVLVKALRDELSEKILEVKVNVPPDPQYAGAIGAAL  286 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----CCCCC---CCEEEECCHHCCHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHH
T ss_conf             99999999999999999984----38899---979998941315999999999999755799476289866365999997


Q ss_pred             CC
Q ss_conf             02
Q gi|255764494|r  373 QA  374 (652)
Q Consensus       373 ~a  374 (652)
                      .|
T Consensus       287 ~A  288 (288)
T pfam01869       287 LA  288 (288)
T ss_pred             CC
T ss_conf             39


No 62 
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.66  E-value=0.0036  Score=42.68  Aligned_cols=46  Identities=24%  Similarity=0.358  Sum_probs=42.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             1466307853056778865410111111135653101111100022
Q gi|255764494|r  330 DEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAG  375 (652)
Q Consensus       330 ~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~  375 (652)
                      ..|+++||.++.+.|.+.+++.+|.++...-+|..+=|+|||+.|.
T Consensus       357 ~~VvftGGVA~N~GIv~ALEe~LG~~IiVPp~pQ~~GAiGAALLAs  402 (404)
T TIGR03286       357 EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS  402 (404)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHC
T ss_conf             9979989620548999999998599377189734331999999853


No 63 
>KOG2517 consensus
Probab=96.62  E-value=0.02  Score=37.00  Aligned_cols=70  Identities=26%  Similarity=0.375  Sum_probs=53.1

Q ss_pred             HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf             00110011110101356311014663078530567788654101111111356531011111000223467522
Q gi|255764494|r  309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVK  382 (652)
Q Consensus       309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~  382 (652)
                      -++..+++..-.+.+   ..|+.+.+.||-|+-|.+-+.+.+.+|.++.+..++|. |+.|||+.|+..++...
T Consensus       398 fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~~~  467 (516)
T KOG2517         398 FQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGKWS  467 (516)
T ss_pred             HHHHHHHHHHHHHCC---CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHHHHCCCCC
T ss_conf             889999999987557---78641453464214899999999986885004653348-99999999876527741


No 64 
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=96.31  E-value=0.086  Score=32.28  Aligned_cols=73  Identities=30%  Similarity=0.340  Sum_probs=40.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHH----HHHHHHH
Q ss_conf             122222222102478888603445655079987244114543101023146542013322455213447----6655367
Q gi|255764494|r  161 AGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDS----CLVEHIC  236 (652)
Q Consensus       161 AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~----~l~~~~~  236 (652)
                      ||-+...+|----|-|..|  ..+....|+=.|+||||+..|+  |+.|.  ++.|++ .++||+-+-.    .-+.|+.
T Consensus       121 AGPdLESiIAGkGaGA~t~--Se~r~t~v~NlDIGGGTtN~sl--FD~Gk--v~dTaC-LdiGGRLik~drst~~v~Yi~  193 (473)
T COG4819         121 AGPDLESIIAGKGAGAQTL--SEQRLTRVLNLDIGGGTTNYSL--FDAGK--VSDTAC-LDIGGRLIKTDRSTGRVVYIH  193 (473)
T ss_pred             CCCCHHHHHCCCCCCCCCH--HHHHCEEEEEEECCCCCCCEEE--ECCCC--CCCCEE-EECCCEEEEECCCCCEEEEEC
T ss_conf             6888788760678542112--0220337999750697231244--31663--047421-301767888505651699973


Q ss_pred             HHHH
Q ss_conf             8764
Q gi|255764494|r  237 DTFK  240 (652)
Q Consensus       237 ~~~~  240 (652)
                      ++++
T Consensus       194 ~k~q  197 (473)
T COG4819         194 KKGQ  197 (473)
T ss_pred             CCHH
T ss_conf             6267


No 65 
>PRK00047 glpK glycerol kinase; Provisional
Probab=96.18  E-value=0.0016  Score=45.32  Aligned_cols=61  Identities=30%  Similarity=0.359  Sum_probs=48.5

Q ss_pred             HHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCH
Q ss_conf             10135631101466307853056778865410111111135653101111100022346752210
Q gi|255764494|r  320 QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDL  384 (652)
Q Consensus       320 ~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~  384 (652)
                      +.+|.+   ++.|.++||++|.|...+++.+.+|.++... ...|+.++|||+.|++-.|..+++
T Consensus       398 ~~~G~~---~~~i~~~GGga~s~lw~Qi~ADvlg~pV~~~-~~~e~~alGaAilAava~G~~~~~  458 (498)
T PRK00047        398 ADSGIR---LKELRVDGGAVANNFLMQFQADILGVDVERP-VVAETTALGAAYLAGLAVGFWKDL  458 (498)
T ss_pred             HHHCCC---CCEEEEECCCHHCHHHHHHHHHHHCCEEEEC-CCCCCHHHHHHHHHHHHCCCCCCH
T ss_conf             862989---6779996680347899999999769848946-888617999999999880877999


No 66 
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=96.17  E-value=0.061  Score=33.40  Aligned_cols=155  Identities=22%  Similarity=0.317  Sum_probs=67.4

Q ss_pred             EEEEECCCCEEEEEEEE---CCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCH
Q ss_conf             69980486606999998---995599756898625627999948998996678986333083511002067549868726
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMD---GKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDS   80 (652)
Q Consensus         4 viGIDlGtt~s~va~~~---~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~   80 (652)
                      ++|||+||+..++.+.+   +|.+.|+-    ....||- ++. +| ..+-..+....   -++++....+..|.+..+.
T Consensus         1 i~alDIGsski~~~v~~~~~~~~l~Ilg----~~~~~s~-Gi~-~G-~I~d~~~~~~~---I~~ai~~aE~~ag~~I~~V   70 (187)
T smart00842        1 IVGLDIGTSKIKALVAEVDEDGEINVIG----VGEVPSR-GIR-KG-VIVDIEAAARA---IREAVEEAERMAGVKIDSV   70 (187)
T ss_pred             CEEEECCCCEEEEEEEEECCCCCEEEEE----EEEEECC-CEE-CC-EEECHHHHHHH---HHHHHHHHHHHCCCCCCEE
T ss_conf             9899847888999999997899899999----9987047-607-89-99828999999---9999999987438742579


Q ss_pred             HHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC-C-----------
Q ss_conf             7876520198699975998279995795871999999999999999999838847336985377887-4-----------
Q gi|255764494|r   81 TVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFN-D-----------  148 (652)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~-~-----------  148 (652)
                      .+.-.-.++     ...+....+.+.++..+.+++     .++.+.|....-.+-..++=.+|..|. |           
T Consensus        71 ~v~isg~~~-----~s~~~~~~~~i~~~~It~~DI-----~~~~~~a~~~~~~~~~~ilh~~p~~y~iD~~~~v~nPiGm  140 (187)
T smart00842       71 YVGISGRHL-----KSVNVSGVVAIPDKEITQEDI-----DRVLEAAKAVALPPDREILHVLPQEYILDGQEGIKDPIGM  140 (187)
T ss_pred             EEEECCCCE-----EEEEEEEEEECCCCCCCHHHH-----HHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCCCC
T ss_conf             999668857-----999989999889879289999-----9999985632469884699998326799587476886578


Q ss_pred             ----------------CHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             ----------------025788634421122222222102478888
Q gi|255764494|r  149 ----------------AQRQATKDAGRIAGLDVLRIINEPTAAALA  178 (652)
Q Consensus       149 ----------------~qR~a~~~Aa~~AGl~v~~li~EptAAal~  178 (652)
                                      ..-+-+..+.+.+||++..++.+|-|+|++
T Consensus       141 ~g~~L~~~~~~i~~~~~~i~ni~~~i~~~~l~v~~~v~~p~Asa~a  186 (187)
T smart00842      141 SGVRLEVDVHVVTAPKSAIQNLEKCVERAGLEVDGIVLEPLASAEA  186 (187)
T ss_pred             CCCEEEEEEEEEEECHHHHHHHHHHHHHCCCCCHHEEECHHHHEEC
T ss_conf             1587999999999868999999999999599283279705645003


No 67 
>PRK00292 glk glucokinase; Provisional
Probab=95.81  E-value=0.15  Score=30.35  Aligned_cols=193  Identities=19%  Similarity=0.199  Sum_probs=89.7

Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHCCC--------------CCCCEEEEEEECCCE-EEEEEEEECCCEEEEECCC-CCCCC
Q ss_conf             2112222222210247888860344--------------565507998724411-4543101023146542013-32245
Q gi|255764494|r  159 RIAGLDVLRIINEPTAAALAYGLDK--------------KDARTVIVFDFGGGT-FDVSLLEMGDGVFEVKATN-GDTFL  222 (652)
Q Consensus       159 ~~AGl~v~~li~EptAAal~Y~~~~--------------~~~~~vlV~D~Gggt-~dvsi~~~~~~~~~vl~~~-gd~~l  222 (652)
                      +..|++.+.|||+=.|.|  |++..              ......+|+  |.|| +-++.+-..++...+++++ |+..+
T Consensus        87 ~~~g~~~v~liNDf~A~a--~~l~~l~~~~l~~i~~g~~~~~~~~~vi--GpGTGLG~a~l~~~~~~~~~~~sEgGH~~f  162 (315)
T PRK00292         87 AELGLDHLLLINDFTAQA--LAIPRLGEEDLIQVGGGEPVPGAPIAVI--GPGTGLGVAGLVHVDGGWVVLPGEGGHVDF  162 (315)
T ss_pred             HHHCCCCEEEEECHHHHH--CCCCCCCHHHEEECCCCCCCCCCCEEEE--ECCCCCCEEEEEECCCEEEECCCCCCCCCC
T ss_conf             863988189984567786--2666699878067079989999957999--468876446789759914872356656567


Q ss_pred             C-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCC-
Q ss_conf             5-21344766553678764201343024478999999999988541155650358630443467887212687311000-
Q gi|255764494|r  223 G-GEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF-  300 (652)
Q Consensus       223 G-G~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~f-  300 (652)
                      . -.+....|.+|+.+++..-...++. +-+.+.+|++..-.....-....+                  ...|++.-+ 
T Consensus       163 ap~~~~e~~l~~~L~~~~g~vs~E~vl-SG~GL~~ly~~l~~~~~~~~~~~~------------------~~~I~~~Al~  223 (315)
T PRK00292        163 APRSEEEAQILEYLRAEIGHVSAERVL-SGPGLVNLYRALCASDGILPELLT------------------PADITEAALA  223 (315)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCEEEE-CCHHHHHHHHHHHHHCCCCCCCCC------------------HHHHHHHHHC
T ss_conf             989978999999999864987230042-425299999999864288877699------------------8999999863


Q ss_pred             --CCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCC--HHHHHH-HHHHCC-CCC---------CCCCCCCCCH
Q ss_conf             --0123420000110011110101356311014663078530--567788-654101-111---------1113565310
Q gi|255764494|r  301 --ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTR--MPKIQQ-SVQDFF-NKS---------PSKGVNPDEV  365 (652)
Q Consensus       301 --e~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssr--iP~v~~-~i~~~f-g~~---------~~~~~npdea  365 (652)
                        +.+|...++.+....-.+..+.-++.---..|.|.||-++  +|.+++ ...+.| .+.         |..-+.-+++
T Consensus       224 ~~d~~a~~~~~~F~~~lG~~agdlaL~~~a~GGvylaGGi~~~l~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~~  303 (315)
T PRK00292        224 GSDPLARRTLSLFCVILGRVAGNLALTLGARGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIPVYVVTHPQP  303 (315)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHCCCEEEECCCCH
T ss_conf             99979999999999999999988899755897599966678878866272889999870673678985695799948974


Q ss_pred             HHHHHHHCC
Q ss_conf             111110002
Q gi|255764494|r  366 VAMGAAIQA  374 (652)
Q Consensus       366 Va~GAA~~a  374 (652)
                      --+|||-++
T Consensus       304 gL~GAA~~~  312 (315)
T PRK00292        304 GLLGAGAYL  312 (315)
T ss_pred             HHHHHHHHH
T ss_conf             288899998


No 68 
>PRK10854 exopolyphosphatase; Provisional
Probab=95.18  E-value=0.21  Score=29.32  Aligned_cols=54  Identities=24%  Similarity=0.456  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHHHHHHH-HCCCC--CCCEEEEEEECCCEEEEEEEE
Q ss_conf             57886344211222222221024788886-03445--655079987244114543101
Q gi|255764494|r  151 RQATKDAGRIAGLDVLRIINEPTAAALAY-GLDKK--DARTVIVFDFGGGTFDVSLLE  205 (652)
Q Consensus       151 R~a~~~Aa~~AGl~v~~li~EptAAal~Y-~~~~~--~~~~vlV~D~Gggt~dvsi~~  205 (652)
                      ...+..+-+..|+++ ++|+...-|-+.| |+...  .....||+|+|||++.+.+.+
T Consensus        99 ~~Fl~~v~~~~G~~I-eVIsG~EEArLiylGV~~~~~~~~~~LviDIGGGSTEli~g~  155 (513)
T PRK10854         99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGE  155 (513)
T ss_pred             HHHHHHHHHHHCCCE-EEECHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEC
T ss_conf             999999999849974-995789999999965552387669659999569826889731


No 69 
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.95  E-value=0.008  Score=40.10  Aligned_cols=56  Identities=14%  Similarity=0.173  Sum_probs=45.5

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCH
Q ss_conf             1101466307853056778865410111111135653101111100022346752210
Q gi|255764494|r  327 SDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDL  384 (652)
Q Consensus       327 ~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~  384 (652)
                      ..++.+.++||+||.+...++..+.+|+++..  -|-||-|.|+++.+.+--|.++++
T Consensus       374 ~~~~~l~vvGGGsrn~ll~Q~~ADi~g~pVv~--g~~EaTalGn~~~q~~a~G~~~~l  429 (471)
T PRK10640        374 EPFSQLHIVGGGCQNALLNQLCADACGIRVIA--GPVEASTLGNIGIQLMTLDELNNV  429 (471)
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHCCCEEC--CCCHHHHHHHHHHHHHHCCCCCCH
T ss_conf             99676999785766599999989982996652--870587999999999976983899


No 70 
>KOG2531 consensus
Probab=94.95  E-value=0.018  Score=37.46  Aligned_cols=54  Identities=22%  Similarity=0.337  Sum_probs=44.1

Q ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             1356311014663078530567788654101111111356531011111000223
Q gi|255764494|r  322 AGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGV  376 (652)
Q Consensus       322 a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~  376 (652)
                      -|.....=+.|+.|||+||--.|-+.|.++||.++..- ...++.|.|+|+.|+.
T Consensus       436 lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y  489 (545)
T KOG2531         436 LGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY  489 (545)
T ss_pred             CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE-CCCCHHHHHHHHHHHH
T ss_conf             35789997469996674323899999999848975764-4873556778999999


No 71 
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=94.93  E-value=0.23  Score=29.02  Aligned_cols=51  Identities=27%  Similarity=0.412  Sum_probs=34.5

Q ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHH-HCC--CCCCCEEEEEEECCCEEEEEEEE
Q ss_conf             86344211222222221024788886-034--45655079987244114543101
Q gi|255764494|r  154 TKDAGRIAGLDVLRIINEPTAAALAY-GLD--KKDARTVIVFDFGGGTFDVSLLE  205 (652)
Q Consensus       154 ~~~Aa~~AGl~v~~li~EptAAal~Y-~~~--~~~~~~vlV~D~Gggt~dvsi~~  205 (652)
                      +..+-...|+++ ++|+...=|.+.| |+-  ...+...||+|+|||++.+.+.+
T Consensus        97 l~~v~~~~G~~I-eVIsG~EEArLiy~GV~~~~~~~~~~LvvDIGGGSTEli~g~  150 (494)
T PRK11031         97 IAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGT  150 (494)
T ss_pred             HHHHHHHHCCCE-EEECHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEE
T ss_conf             999999969987-997709999999987665046778859999579836899850


No 72 
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=94.82  E-value=0.35  Score=27.65  Aligned_cols=52  Identities=25%  Similarity=0.327  Sum_probs=36.9

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCC--------------------CCCCCCHHHHHHHHCCCCC
Q ss_conf             311014663078530567788654101111111--------------------3565310111110002234
Q gi|255764494|r  326 PSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSK--------------------GVNPDEVVAMGAAIQAGVL  377 (652)
Q Consensus       326 ~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~--------------------~~npdeaVa~GAA~~a~~l  377 (652)
                      .-+-|-++|+|-.||.|.||..+......++.+                    --||-...|.||-+.+-.+
T Consensus       776 ~y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~WYPF~k~grIddPKtTAaVGAMLC~Lsl  847 (1014)
T COG4457         776 HYDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTWYPFRKQGRIDDPKTTAAVGAMLCALSL  847 (1014)
T ss_pred             HHCCCEEEECCCCCCCCCHHHHHHHCCCCCCCCEEECCCEECCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             314657997388665710899986337899883676266000653013115767996227899999998776


No 73 
>KOG0680 consensus
Probab=94.47  E-value=0.42  Score=27.07  Aligned_cols=205  Identities=21%  Similarity=0.320  Sum_probs=87.9

Q ss_pred             CEEEEEECCC-CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHH-HH---HCCCCC-----CCEEEEEEECCCEEEEEEEE
Q ss_conf             3369853778-87402578863442112222222210247888-86---034456-----55079987244114543101
Q gi|255764494|r  136 SKAVITVPAY-FNDAQRQATKDAGRIAGLDVLRIINEPTAAAL-AY---GLDKKD-----ARTVIVFDFGGGTFDVSLLE  205 (652)
Q Consensus       136 ~~~VitVP~~-f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal-~Y---~~~~~~-----~~~vlV~D~Gggt~dvsi~~  205 (652)
                      .+.|+|=|.+ |...|..+..--.+-=+|.  . +.-.+||+| ++   ..+..+     +...+|+|-|-+-+.|  +-
T Consensus        94 ~~ivlTep~~~~psi~~~t~eilFEey~fd--~-v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThI--ip  168 (400)
T KOG0680          94 HNIVLTEPCMTFPSIQEHTDEILFEEYQFD--A-VLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHI--IP  168 (400)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCC--E-EEECCHHHHCCHHHHCCCCCCCCCCCCCEEEEEECCCCEEEE--EH
T ss_conf             417971565665202566777787874433--5-861587880010111047844455454159999178755897--52


Q ss_pred             ECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-C-------HHHHH-HHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             0231465420133224552134476655367876420134-3-------02447-8999999999988541155650358
Q gi|255764494|r  206 MGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGI-D-------LKQDT-LALQRLKEAAEKAKIELSSTSQTEI  276 (652)
Q Consensus       206 ~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~-d-------~~~~~-~a~~rL~~~~e~aK~~LS~~~~~~i  276 (652)
                      +-+|...-.|.- --++||..+++.|-+++.  | +++++ |       +.++- -..+.+...-+.+|...-   +-.+
T Consensus       169 ~v~g~~~~qaV~-RiDvGGK~LTn~LKE~iS--y-R~lNvmdET~vVNeiKEdvcfVSqnF~~~m~~~~~k~~---~~~~  241 (400)
T KOG0680         169 VVKGIPYYQAVK-RIDVGGKALTNLLKETIS--Y-RHLNVMDETYVVNEIKEDVCFVSQNFKEDMDIAKTKFQ---ENKV  241 (400)
T ss_pred             HHCCCCHHHCEE-EEECCHHHHHHHHHHHHH--H-HHHCCCCHHHHHHHHHHHEEEECHHHHHHHHHHHHCCC---CCEE
T ss_conf             335726422057-860342888888988864--6-55223201333554201117852516888999861222---3515


Q ss_pred             EECCCCCCCCCCCE--------------EEEEECCCCC---CCCCCCCHHH-----HHHCCCCCCHHC--CCCCEEEEEE
Q ss_conf             63044346788721--------------2687311000---0123420000-----110011110101--3563110146
Q gi|255764494|r  277 NLPFISANSAGAQH--------------LNMKLTRAQF---ERLVNHLIQK-----TVEPCKKCLQDA--GLSPSDIDEV  332 (652)
Q Consensus       277 ~i~~~~~~~~~g~d--------------~~~~itR~~f---e~l~~~l~~~-----~~~~i~~~L~~a--~~~~~~I~~V  332 (652)
                      .+++.+.|+...+.              -.++++-+.|   |-+..|---.     +.+.|-+.|...  .+.+.-+.-|
T Consensus       242 ~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~NI  321 (400)
T KOG0680         242 MIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLENI  321 (400)
T ss_pred             EEEEECCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCHHHCCHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCE
T ss_conf             78986477532231267558889987765146103211162330696443856479169999999869797789987468


Q ss_pred             EECCCCCCHHHHHHHHHHCC
Q ss_conf             63078530567788654101
Q gi|255764494|r  333 VLVGGMTRMPKIQQSVQDFF  352 (652)
Q Consensus       333 ~lvGGssriP~v~~~i~~~f  352 (652)
                      +++||+|..|..++.|....
T Consensus       322 v~iGGn~~fPgF~~RL~~El  341 (400)
T KOG0680         322 VCIGGNSNFPGFRQRLAREL  341 (400)
T ss_pred             EEECCCCCCCCHHHHHHHHH
T ss_conf             99347667864689999999


No 74 
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.35  E-value=0.37  Score=27.49  Aligned_cols=82  Identities=26%  Similarity=0.344  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH------HHHHHHHHCCCCCCCCCCCHHHHHHHH-HCCC-CC-CCEE
Q ss_conf             9999999999983884733698537788740257------886344211222222221024788886-0344-56-5507
Q gi|255764494|r  119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQ------ATKDAGRIAGLDVLRIINEPTAAALAY-GLDK-KD-ARTV  189 (652)
Q Consensus       119 iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~------a~~~Aa~~AGl~v~~li~EptAAal~Y-~~~~-~~-~~~v  189 (652)
                      .+.-|+..++...+.++..+ ..|   -|.+-|.      .+..+.+..|+++ .+|+...=|-+.| |.-. -. ....
T Consensus        57 ~~~aL~~f~e~~~~~~~~~v-~~v---ATsA~R~A~N~~eFl~rv~~~~G~~i-evIsGeeEArl~~lGv~~~~~~~~~~  131 (492)
T COG0248          57 ALSALKRFAELLDGFGAEEV-RVV---ATSALRDAPNGDEFLARVEKELGLPI-EVISGEEEARLIYLGVASTLPRKGDG  131 (492)
T ss_pred             HHHHHHHHHHHHHHCCCCEE-EEE---HHHHHHCCCCHHHHHHHHHHHHCCCE-EEECCHHHHHHHHHHHHHCCCCCCCE
T ss_conf             99999999999965898779-985---26887718998999999999869963-87160778899998887247877887


Q ss_pred             EEEEECCCEEEEEEEE
Q ss_conf             9987244114543101
Q gi|255764494|r  190 IVFDFGGGTFDVSLLE  205 (652)
Q Consensus       190 lV~D~Gggt~dvsi~~  205 (652)
                      +|+|+|||++.+++..
T Consensus       132 lv~DIGGGStEl~~g~  147 (492)
T COG0248         132 LVIDIGGGSTELVLGD  147 (492)
T ss_pred             EEEEECCCEEEEEEEC
T ss_conf             9998068737999713


No 75 
>pfam02541 Ppx-GppA Ppx/GppA phosphatase family. This family consists of the N-terminal region of exopolyphosphatase (Ppx) EC:3.6.1.11 and guanosine pentaphosphate phospho-hydrolase (GppA) EC:3.6.1.40.
Probab=94.31  E-value=0.4  Score=27.22  Aligned_cols=105  Identities=21%  Similarity=0.271  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEE-EEECCCCCCCHHHHHHHHH-HHCCCCCCCCCCCHHHHHHHH-HCCCC--CCCEEEE
Q ss_conf             99999999999998388473369-8537788740257886344-211222222221024788886-03445--6550799
Q gi|255764494|r  117 AIVLQKMKETAESFLGETVSKAV-ITVPAYFNDAQRQATKDAG-RIAGLDVLRIINEPTAAALAY-GLDKK--DARTVIV  191 (652)
Q Consensus       117 a~iL~~lk~~ae~~l~~~v~~~V-itVP~~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAal~Y-~~~~~--~~~~vlV  191 (652)
                      -..|+..++.++.+   .++++. ++.-|-=...-++...+.. +..|+++ ++|+.-.=|.+.| |.-..  .....+|
T Consensus        41 ~~~L~~f~~~~~~~---~v~~i~~vATsA~R~A~N~~efl~~i~~~tGi~i-~IIsg~eEA~l~~~gv~~~~~~~~~~lv  116 (285)
T pfam02541        41 ISALKEFAEILQGF---GVENVRAVATSALRDAVNADEFLARVKKETGLPV-EIISGEEEARLIYLGVVSTLPSKGRGLV  116 (285)
T ss_pred             HHHHHHHHHHHHHC---CCCEEEEEEHHHHHCCCCHHHHHHHHHHHHCCCE-EEECHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf             99999999999867---9977999842997759288999999999859973-9964799999988240304677788899


Q ss_pred             EEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHH
Q ss_conf             872441145431010231465420133224552134476
Q gi|255764494|r  192 FDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSC  230 (652)
Q Consensus       192 ~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~  230 (652)
                      +|+|||++.++.+.  ++.+.-  .. .-.||.-.+.+.
T Consensus       117 ~DIGGGStEl~~~~--~~~~~~--~~-Sl~lG~vrl~e~  150 (285)
T pfam02541       117 IDIGGGSTELVLGE--NKKVRK--LI-SLPMGCVRLTER  150 (285)
T ss_pred             EEECCCCEEEEEEE--CCEEEE--EE-EECCCCHHHHHH
T ss_conf             98279827999987--890778--77-724788999998


No 76 
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=93.82  E-value=0.31  Score=28.02  Aligned_cols=30  Identities=33%  Similarity=0.825  Sum_probs=25.0

Q ss_pred             CCCCEEEEEEECCCEEEEEEEEEC-CCEEEE
Q ss_conf             565507998724411454310102-314654
Q gi|255764494|r  184 KDARTVIVFDFGGGTFDVSLLEMG-DGVFEV  213 (652)
Q Consensus       184 ~~~~~vlV~D~Gggt~dvsi~~~~-~~~~~v  213 (652)
                      ++.+.+|++|+||..+-+++|.+. .|.++.
T Consensus        72 ~e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~  102 (466)
T COG5026          72 NESGSVLAIDLGGTNLRVCLVVLGGDGTFDI  102 (466)
T ss_pred             CCCCCEEEEECCCCEEEEEEEEECCCCCCCC
T ss_conf             8778789996289558999999689997210


No 77 
>KOG0681 consensus
Probab=93.38  E-value=0.3  Score=28.12  Aligned_cols=53  Identities=11%  Similarity=0.163  Sum_probs=32.6

Q ss_pred             CCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             550799872441145431010231465420133224552134476655367876420134
Q gi|255764494|r  186 ARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGI  245 (652)
Q Consensus       186 ~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~  245 (652)
                      .+.-+|+++|..++.|-.  +-+|.. ++....-.++||...-    +|+...+..||-.
T Consensus       167 ~~~~liis~g~~~T~vip--vldG~~-il~~~kRiN~GG~qa~----dYL~~Lmq~Kyp~  219 (645)
T KOG0681         167 NKSGLIISMGHSATHVIP--VLDGRL-ILKDVKRINWGGYQAG----DYLSRLMQLKYPF  219 (645)
T ss_pred             CCCEEEEECCCCCCEEEE--EECCCH-HHHCCEEECCCCCHHH----HHHHHHHHCCCCC
T ss_conf             765489963777650588--755712-5311534033761188----9999999601766


No 78 
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.96  E-value=0.11  Score=31.38  Aligned_cols=41  Identities=34%  Similarity=0.502  Sum_probs=25.7

Q ss_pred             CCCCCCCCHHHHHHHHHCC--CCCCCEEEEEEECCCEEEEEEEE
Q ss_conf             2222221024788886034--45655079987244114543101
Q gi|255764494|r  164 DVLRIINEPTAAALAYGLD--KKDARTVIVFDFGGGTFDVSLLE  205 (652)
Q Consensus       164 ~v~~li~EptAAal~Y~~~--~~~~~~vlV~D~Gggt~dvsi~~  205 (652)
                      .+..+.+-|.|-.++...-  .... ++++|||||.|+|+|++.
T Consensus       254 pv~tI~SGPAagvvGAa~ltg~~~g-~~i~~DmGGTStDva~i~  296 (674)
T COG0145         254 PVETILSGPAAGVVGAAYLTGLKAG-NAIVFDMGGTSTDVALII  296 (674)
T ss_pred             CEEEEEECCHHHHHHHHHHCCCCCC-CEEEEECCCCCEEEEEEE
T ss_conf             8415840537988899985200369-799997577610135663


No 79 
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase; InterPro: IPR006003    The enzymes for catabolism of the pentitols D-arabinitol and ribitol include NAD-dependent pentose dehydrogenase (dalD and rbtD), ATP-dependent pentulose kinases (dalK and rbtK) and a pentose-specific ion symporter (dalT and rbtT). Of the two kinases (19.3 0dentity), DalK (487 aa) belongs to the family of short D-xylulokinases and RbtK (D-ribulokinase; 535 aa) to the family of long kinases . .
Probab=92.58  E-value=0.079  Score=32.56  Aligned_cols=62  Identities=24%  Similarity=0.343  Sum_probs=50.0

Q ss_pred             CCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf             1111010135631101466307853056778865410111111135653101111100022346
Q gi|255764494|r  315 CKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQ  378 (652)
Q Consensus       315 i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls  378 (652)
                      |-+++...|..  -+..|++.||.++-|.+.+.+.+.++.++...-+-.|+|..|||+.+|.=+
T Consensus       457 I~ea~~~~Gr~--~~k~i~~sGg~~qnpl~~q~~Ad~C~~Pvlipr~~~e~Vl~GaA~LGA~A~  518 (574)
T TIGR01315       457 IVEALTAAGRA--VIKSILISGGLAQNPLLVQLLADICDLPVLIPRDVQEAVLLGAAILGAAAS  518 (574)
T ss_pred             HHHHHHHCCCE--EEEEEEECCCCCCCHHHHHHHHHHCCCCEECCHHHCHHHHHHHHHHHHHHC
T ss_conf             99998626860--220113417644525788889634178732441102057776888887631


No 80 
>TIGR00395 leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases.; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=92.25  E-value=0.078  Score=32.58  Aligned_cols=88  Identities=23%  Similarity=0.417  Sum_probs=49.8

Q ss_pred             CCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCCCEEECHHHHH---HHHHCCCHHH------HHHHHHCCCCCCC
Q ss_conf             486606999998995599756898625627999948998996678986---3330835110------0206754986872
Q gi|255764494|r    9 LGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKR---QAVTNPSNTI------FAAKRLIGRRFND   79 (652)
Q Consensus         9 lGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~---~~~~~p~~ti------~~~KrliG~~~~d   79 (652)
                      ||.||+=   +.+..--++..-.+...|-+-+-.-++|-.++-..|..   ++.+.|++-+      .+-+.|||+....
T Consensus       305 yG~Tn~w---v~P~~~Yv~~~~~~e~etenGielienGiwi~~~~A~~~L~yq~~~PkrGf~~~~~~v~g~~liG~~v~~  381 (1109)
T TIGR00395       305 YGVTNVW---VNPDITYVIAEVGGEKETENGIELIENGIWIVSKEAVENLSYQKLKPKRGFLKVIEEVDGKQLIGKKVKN  381 (1109)
T ss_pred             HCCEEEE---ECCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECHHHHCCCEEEC
T ss_conf             0755355---5577516899733740012004455422577789999604343458874227886530734241764457


Q ss_pred             H-HHHHHHHCCCEEEEECCCC
Q ss_conf             6-7876520198699975998
Q gi|255764494|r   80 S-TVAKDASLVPFKIVEGKGG   99 (652)
Q Consensus        80 ~-~~~~~~~~~~~~~~~~~~~   99 (652)
                      | .+.+..+.+|.++|....+
T Consensus       382 Pq~v~~e~pILPa~fV~~~~g  402 (1109)
T TIGR00395       382 PQVVGKEVPILPAEFVDTEKG  402 (1109)
T ss_pred             CCCCCCCCCCCCCCCCCCCCC
T ss_conf             732589775477011267888


No 81 
>pfam03702 UPF0075 Uncharacterized protein family (UPF0075). The proteins is this family are about 370 amino acids long and have no known function.
Probab=92.09  E-value=0.35  Score=27.66  Aligned_cols=61  Identities=25%  Similarity=0.379  Sum_probs=38.4

Q ss_pred             HHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC-CCC----CCCCCCCHHHHHHHHCCC
Q ss_conf             1001111010135631101466307853056778865410111-111----135653101111100022
Q gi|255764494|r  312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK-SPS----KGVNPDEVVAMGAAIQAG  375 (652)
Q Consensus       312 ~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~-~~~----~~~npdeaVa~GAA~~a~  375 (652)
                      ...|-+.+....   ...+.|++.||+.+-|.+-+.|++.|+. .+.    ..+++|--=|..-|+.|.
T Consensus       270 a~sIa~~i~~~~---~~~~~iiv~GGG~~N~~L~~~l~~~l~~~~v~~~d~~g~~~~~~EA~~FA~La~  335 (363)
T pfam03702       270 AVTIVDALLQAG---PDCERLLVCGGGARNPLLMARLAELLPNVDVASTDELGLDPDYMEAMAFAWLAY  335 (363)
T ss_pred             HHHHHHHHHHCC---CCCCEEEEECCCCCCHHHHHHHHHHCCCCEEECHHHCCCCHHHHHHHHHHHHHH
T ss_conf             999999999628---997589997887568899999997779998842888399822899999999999


No 82 
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=91.97  E-value=0.25  Score=28.79  Aligned_cols=49  Identities=24%  Similarity=0.395  Sum_probs=34.5

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHHCCCC-CCC----CCCCCCCHHHHHHHHCCC
Q ss_conf             1101466307853056778865410111-111----135653101111100022
Q gi|255764494|r  327 SDIDEVVLVGGMTRMPKIQQSVQDFFNK-SPS----KGVNPDEVVAMGAAIQAG  375 (652)
Q Consensus       327 ~~I~~V~lvGGssriP~v~~~i~~~fg~-~~~----~~~npdeaVa~GAA~~a~  375 (652)
                      ...+.|++.||+.+-|.+-+.|++.|.. .+.    ..+++|--=|.+-|+.|.
T Consensus       285 ~~~~~i~v~GGG~~N~~L~~~l~~~l~~~~v~~~d~~gi~~d~~EA~~FA~La~  338 (366)
T PRK09585        285 PGPRELLVCGGGARNPTLMERLAALLPGARVATTDALGIDPDAVEALAFAWLAV  338 (366)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHCCCCEEECHHHHCCCHHHHHHHHHHHHHH
T ss_conf             996689997887557999999997689987844898099904999999999999


No 83 
>pfam02685 Glucokinase Glucokinase. This is a family of glucokinases or glucose kinases EC:2.7.1.2. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP.
Probab=91.63  E-value=1  Score=24.05  Aligned_cols=195  Identities=18%  Similarity=0.230  Sum_probs=92.0

Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHCCC--------------CCCCEEEEEEECCCEEEEEEEEECCCEEEEECCC-CCCCCC
Q ss_conf             2112222222210247888860344--------------5655079987244114543101023146542013-322455
Q gi|255764494|r  159 RIAGLDVLRIINEPTAAALAYGLDK--------------KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATN-GDTFLG  223 (652)
Q Consensus       159 ~~AGl~v~~li~EptAAal~Y~~~~--------------~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~-gd~~lG  223 (652)
                      +.-|++.+.|||+=+|.|  |++..              ......+|+--|-| +-++.+-..++...+++++ |+..+.
T Consensus        88 ~~~g~~~v~liNDf~A~a--~~l~~l~~~~~~~i~~g~~~~~~~~~viGpGTG-LG~a~l~~~~~~~~v~~sEgGH~~fa  164 (316)
T pfam02685        88 AALGLDAVHLINDFEAQA--YAIPRLGADDLVQLGGGKPDPGAPIAVLGPGTG-LGVAGLIPTGGGWIVLPGEGGHVDFA  164 (316)
T ss_pred             HHHCCCEEEEECCHHHHH--CCCCCCCHHHCEEECCCCCCCCCCEEEEECCCC-CCEEEEEECCCCEEECCCCCCCCCCC
T ss_conf             972998599972777887--045459987806607998999996799967887-52477898699538555766455679


Q ss_pred             -CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCC--
Q ss_conf             -21344766553678764201343024478999999999988541155650358630443467887212687311000--
Q gi|255764494|r  224 -GEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF--  300 (652)
Q Consensus       224 -G~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~f--  300 (652)
                       -.+....|.+|+.+++..-.-.++. +-+.+.+|++..-.... +...        .+     .    ...|++.-.  
T Consensus       165 p~~~~e~~l~~~L~~~~g~vs~E~vl-SG~GL~~ly~~l~~~~~-~~~~--------~~-----~----~~~I~~~A~~~  225 (316)
T pfam02685       165 PRSEREAELLQYLRRRFGHVSAERVL-SGPGLVNLYRALCALDG-LTPE--------LL-----L----PADITAAALAG  225 (316)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCEEEE-CCHHHHHHHHHHHHHCC-CCCC--------CC-----C----HHHHHHHHHHC
T ss_conf             99979999999999864976040022-54539999999985248-9877--------79-----9----99999999809


Q ss_pred             -CCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCC--HHHHHH-HHHHCC-CCC---------CCCCCCCCCHH
Q ss_conf             -0123420000110011110101356311014663078530--567788-654101-111---------11135653101
Q gi|255764494|r  301 -ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTR--MPKIQQ-SVQDFF-NKS---------PSKGVNPDEVV  366 (652)
Q Consensus       301 -e~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssr--iP~v~~-~i~~~f-g~~---------~~~~~npdeaV  366 (652)
                       +.+|...++.+....-.++.+.-++.---..|.|.||-++  +|.+++ ...+.| .+.         |..-+.-+.+-
T Consensus       226 ~d~~a~~~~~~F~~~lG~~~gdlaL~~~a~GGvylaGGi~~~l~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~~g  305 (316)
T pfam02685       226 DDPLAREALELFCAILGSVAGNLALTLGARGGVYIAGGIAPRILEFLKASGFRARFEDKGRFSALLRDIPVYVITHPQPG  305 (316)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHCCCEEEECCCCHH
T ss_conf             99789999999999999999999997379955999660577778561768999998616617899854957999389741


Q ss_pred             HHHHHHCCC
Q ss_conf             111100022
Q gi|255764494|r  367 AMGAAIQAG  375 (652)
Q Consensus       367 a~GAA~~a~  375 (652)
                      -+|||.+|.
T Consensus       306 L~GAa~~a~  314 (316)
T pfam02685       306 LLGAAAAAR  314 (316)
T ss_pred             HHHHHHHHH
T ss_conf             888999996


No 84 
>PRK00047 glpK glycerol kinase; Provisional
Probab=89.79  E-value=0.36  Score=27.58  Aligned_cols=20  Identities=40%  Similarity=0.611  Sum_probs=17.6

Q ss_pred             EEEEECCCCEEEEEEEECCE
Q ss_conf             69980486606999998995
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKN   23 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~   23 (652)
                      ++|||+|||.+++++++..+
T Consensus         7 vlgiD~GTts~Ka~l~d~~G   26 (498)
T PRK00047          7 ILALDQGTTSSRAIIFDHKG   26 (498)
T ss_pred             EEEEECCCCEEEEEEECCCC
T ss_conf             99997463303566996999


No 85 
>pfam00370 FGGY_N FGGY family of carbohydrate kinases, N-terminal domain. This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain.
Probab=89.60  E-value=0.26  Score=28.58  Aligned_cols=20  Identities=35%  Similarity=0.637  Sum_probs=17.0

Q ss_pred             EEEEECCCCEEEEEEEECCE
Q ss_conf             69980486606999998995
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKN   23 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~   23 (652)
                      ++|||+|||+.++++++..+
T Consensus         2 ~lgIDiGTt~iKa~l~d~~g   21 (245)
T pfam00370         2 VLGIDCGTTSTKAIVFNKQG   21 (245)
T ss_pred             EEEEEHHHCCEEEEEECCCC
T ss_conf             99998030021000785999


No 86 
>TIGR02627 rhamnulo_kin rhamnulokinase; InterPro: IPR013449    Rhamnulokinase (2.7.1.5 from EC) is an enzyme that catalyzes the second step in rhamnose catabolism.; GO: 0008993 rhamnulokinase activity, 0019301 rhamnose catabolic process.
Probab=88.10  E-value=0.3  Score=28.12  Aligned_cols=309  Identities=20%  Similarity=0.211  Sum_probs=140.5

Q ss_pred             EEE-EEECCCCCCCCCEEEEEECCCCEEECHHHHHH--HHH-----------CCCHHHHHHHHHCCCCCCCHHHHHHHH-
Q ss_conf             559-97568986256279999489989966789863--330-----------835110020675498687267876520-
Q gi|255764494|r   23 NVR-VIENAEGTRTTPSMVGFTDEGERLVGQPAKRQ--AVT-----------NPSNTIFAAKRLIGRRFNDSTVAKDAS-   87 (652)
Q Consensus        23 ~~~-ii~n~~g~r~~PS~V~~~~~~~~~vG~~A~~~--~~~-----------~p~~ti~~~KrliG~~~~d~~~~~~~~-   87 (652)
                      +|+ |+++.+|.|..+. |||.+  .|.-|.-+.-+  +.+           -|=||+|.+|=+--   ..|+.-.... 
T Consensus        77 GVDyVLLD~~G~r~g~p-~sYRD--~RT~G~m~~~~~~lg~e~iY~~TGIQFl~fNTLYQL~Al~~---~~P~ll~~~~~  150 (460)
T TIGR02627        77 GVDYVLLDKNGERVGDP-VSYRD--SRTDGVMAEVQSELGKEAIYRKTGIQFLPFNTLYQLKALTE---QNPDLLEKVEH  150 (460)
T ss_pred             CCCEEEECCCCCEECCC-CCCCC--CHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHCC---CCCHHHHHHHH
T ss_conf             10256716998563472-01466--10445999999730655566631853021016899998514---88325899987


Q ss_pred             ------CCCEEEEECCCCEEEEEECCEEE---CHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEEECCCCCCCHHHHHHHH
Q ss_conf             ------19869997599827999579587---199999999999999999983884733-69853778874025788634
Q gi|255764494|r   88 ------LVPFKIVEGKGGDAWIEAQGKQY---SPSQISAIVLQKMKETAESFLGETVSK-AVITVPAYFNDAQRQATKDA  157 (652)
Q Consensus        88 ------~~~~~~~~~~~~~~~~~~~~~~~---~peei~a~iL~~lk~~ae~~l~~~v~~-~VitVP~~f~~~qR~a~~~A  157 (652)
                            ++.|.++-..+         .+|   |..|++-.--+.-=..--.|+|-+... .-++-|.+.=-.-|......
T Consensus       151 ~LlIPDYl~Y~LTG~~v---------~EYTNAsTTQLlN~~~~~WD~~LL~~lG~~~~~F~~~~~PG~~iG~~~~~~~~~  221 (460)
T TIGR02627       151 LLLIPDYLNYRLTGKLV---------AEYTNASTTQLLNLETKDWDKDLLDYLGVPAEWFADITHPGNVIGELKEDLWEE  221 (460)
T ss_pred             HHCCCCCCCEEECCCEE---------CEECCCHHHHHHHCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHHC
T ss_conf             51164110301327410---------000274356654143443118999870888668478887421104625677731


Q ss_pred             HHHCCCCCCCCCCCHHHHH-HHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEE--EECCCC-CCCCCCHHHHH----
Q ss_conf             4211222222221024788-886034456550799872441145431010231465--420133-22455213447----
Q gi|255764494|r  158 GRIAGLDVLRIINEPTAAA-LAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFE--VKATNG-DTFLGGEDFDS----  229 (652)
Q Consensus       158 a~~AGl~v~~li~EptAAa-l~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~--vl~~~g-d~~lGG~d~D~----  229 (652)
                      ...-.++|+..=.-=||.| ++  -+. .+.+-++  +-.||  .|++-++...--  -.|-.. -++=||-|=..    
T Consensus       222 ~~~~~~pV~~VAtHDTASAVva--~P~-~~~~~aY--LSSGT--WSLmG~E~~tP~~~~~Al~~NiTNEGGa~g~YRvLK  294 (460)
T TIGR02627       222 LDGDQVPVVAVATHDTASAVVA--APL-QDENAAY--LSSGT--WSLMGLESSTPITNEQALAANITNEGGADGRYRVLK  294 (460)
T ss_pred             CCCCCCCEEEECCCCCCCCEEE--CCC-CCCCEEE--ECCCH--HHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEH
T ss_conf             5797223363066762202032--576-7687578--71551--334300578896777899608876265465212301


Q ss_pred             HHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCC-
Q ss_conf             665-536787642013430244789999999999885411556503586304434678872126873110000123420-
Q gi|255764494|r  230 CLV-EHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHL-  307 (652)
Q Consensus       230 ~l~-~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l-  307 (652)
                      .|+ =|+..+..+...     +...+..|   ++.|+..++...-..++=+.+         ++-.=--++....|++- 
T Consensus       295 NIMGLWl~qrv~~~~~-----~~~dl~~l---~~~A~~~p~f~~iInpnD~RF---------~nP~~M~~eI~~yCREt~  357 (460)
T TIGR02627       295 NIMGLWLLQRVCRERD-----DIKDLAAL---IEQAKAEPAFKSIINPNDDRF---------INPENMVEEIQAYCRETN  357 (460)
T ss_pred             HHHHHHHHHHHHHHHC-----CHHHHHHH---HHHHHCCCCCEEEECCCHHHC---------CCCHHHHHHHHHHHHHCC
T ss_conf             0445899999853301-----35469999---999713898113006773114---------796547999999754237


Q ss_pred             --HHHHHHCCC------------CC-CHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             --000110011------------11-010135631101466307853056778865410111111135653101111100
Q gi|255764494|r  308 --IQKTVEPCK------------KC-LQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAI  372 (652)
Q Consensus       308 --~~~~~~~i~------------~~-L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~  372 (652)
                        +.++..-+-            ++ .+-+.+.-.+|..+-+|||+|+.-++-+++.+..|+++...  |-||-++|=-.
T Consensus       358 Q~vP~s~aeLArCiFdSLAl~Y~~~~~~l~~l~g~~i~~LhIVGGGs~n~~LNQL~AD~cGi~V~AG--PvEAs~lGN~~  435 (460)
T TIGR02627       358 QPVPESDAELARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADLCGIEVIAG--PVEASTLGNIG  435 (460)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEC--CHHHHHHHHHH
T ss_conf             8899965568887888899999999999873026885514686175144466778888728814415--33678877899


No 87 
>KOG1385 consensus
Probab=87.40  E-value=2.1  Score=21.77  Aligned_cols=30  Identities=33%  Similarity=0.510  Sum_probs=21.0

Q ss_pred             CCCCCCCEEEEEEECCCEEEEEEEEECCCE
Q ss_conf             344565507998724411454310102314
Q gi|255764494|r  181 LDKKDARTVIVFDFGGGTFDVSLLEMGDGV  210 (652)
Q Consensus       181 ~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~  210 (652)
                      +......++.|+|+|||+++++..--....
T Consensus       207 L~~~~~~tvgv~DLGGGSTQi~f~p~~e~~  236 (453)
T KOG1385         207 LGAPGHRTVGVVDLGGGSTQITFLPTFEDT  236 (453)
T ss_pred             CCCCCCCCEEEEECCCCEEEEEEECCCCCC
T ss_conf             589987735899727964788970476444


No 88 
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=85.99  E-value=0.98  Score=24.26  Aligned_cols=23  Identities=35%  Similarity=0.510  Sum_probs=19.2

Q ss_pred             CCCEEEEECCCCEEEEEEEECCE
Q ss_conf             98169980486606999998995
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDGKN   23 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~~~   23 (652)
                      |+.++|||||+..+-+|+.+...
T Consensus         3 ~griLgiD~G~kriGlAisD~~~   25 (141)
T PRK00109          3 SGRILGFDVGTKRIGVAIGDPLG   25 (141)
T ss_pred             CCCEEEEEECCCEEEEEEECCCC
T ss_conf             88889998189979999946999


No 89 
>TIGR02628 fuculo_kin_coli L-fuculokinase; InterPro: IPR013450    Proteins in this entry are L-fuculokinases from the clade that includes the Escherichia coli enzyme P11553 from SWISSPROT. They catalyze the second step in fucose catabolism and belong to the FGGY family of carbohydrate kinases. These enzymes are encoded by the kinase (K) gene of the fucose (fuc) operon.; GO: 0008737 L-fuculokinase activity, 0005975 carbohydrate metabolic process.
Probab=85.82  E-value=0.54  Score=26.22  Aligned_cols=143  Identities=20%  Similarity=0.220  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC---CCEEEEEECCCCCCCCCCCEEEE---EECCCCCC
Q ss_conf             4766553678764201343024478999999999988541155---65035863044346788721268---73110000
Q gi|255764494|r  228 DSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSS---TSQTEINLPFISANSAGAQHLNM---KLTRAQFE  301 (652)
Q Consensus       228 D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~---~~~~~i~i~~~~~~~~~g~d~~~---~itR~~fe  301 (652)
                      --..++|+.+.|=...    ..+..-+.-|-++++++--.=+.   .+.-+.++.++......|.-+..   .|-|+-||
T Consensus       306 ~SgV~EWv~klfftae----~~S~~~y~~mIeEar~~~nga~gvvfkPNf~~~~~~~gqg~i~Gl~l~ttRG~iyraale  381 (473)
T TIGR02628       306 ASGVVEWVAKLFFTAE----TASDELYKVMIEEARKVANGADGVVFKPNFETDLDSLGQGAIEGLSLFTTRGEIYRAALE  381 (473)
T ss_pred             HHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHCCCCCCCCEEEECCHHHHHHHHHH
T ss_conf             8889999987753100----341579999999998733556702457762204333065430110220335789999999


Q ss_pred             CCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf             12342000011001111010135631101466307853056778865410111111135653101111100022346752
Q gi|255764494|r  302 RLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDV  381 (652)
Q Consensus       302 ~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~  381 (652)
                      -|...|-.+ ++.++++   +.++.   ..+++|||+||--+=-++=.+.+..++ +-++--|+-+.|||+.+-.=+|..
T Consensus       382 gl~~qLk~~-l~~L~~~---~qf~a---~~l~~VGGGskN~LWNQirAn~L~~p~-~vvd~aE~TV~GAAmF~f~GvG~y  453 (473)
T TIGR02628       382 GLAKQLKRR-LDVLEQV---SQFKA---KELVVVGGGSKNVLWNQIRANALDLPV-KVVDDAEATVLGAAMFAFAGVGIY  453 (473)
T ss_pred             HHHHHHHHH-HHHHHHH---HHCCC---CCEEEECCCCCCHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             999998742-3578776---31137---756896178521146786676650870-001200257899999762246443


Q ss_pred             C
Q ss_conf             2
Q gi|255764494|r  382 K  382 (652)
Q Consensus       382 ~  382 (652)
                      .
T Consensus       454 ~  454 (473)
T TIGR02628       454 E  454 (473)
T ss_pred             C
T ss_conf             8


No 90 
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=84.08  E-value=3  Score=20.63  Aligned_cols=180  Identities=21%  Similarity=0.241  Sum_probs=83.1

Q ss_pred             HHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEE-CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH--H
Q ss_conf             788886034456550799872441145431010-2314654201332245521344766553678764201343024--4
Q gi|255764494|r  174 AAALAYGLDKKDARTVIVFDFGGGTFDVSLLEM-GDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQ--D  250 (652)
Q Consensus       174 AAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~-~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~--~  250 (652)
                      +-|+.-.+......+.+|.++||    |+-+.. ..+. .|++  +|+.-|-.-+|..+-.|..+.|.+.-..--+.  +
T Consensus       150 vPA~H~Al~~~~~~~r~vlNiGG----IaNlt~l~~~~-~v~g--~DtGPgN~llD~wi~~~~g~~yD~~g~~A~~G~v~  222 (371)
T COG2377         150 VPAFHAALARAPRERRAVLNIGG----IANLTYLPPGG-PVLG--FDTGPGNMLLDAWIQAHGGKPYDKDGAWAASGKVD  222 (371)
T ss_pred             HHHHHHHHHCCCCCCEEEEECCC----EEEEEECCCCC-CEEE--EECCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCC
T ss_conf             01332676548998769995265----57777617998-3465--30688604899999983288767674522158968


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCC---CCCCCHHHHHHC--CCCCCHHCCCC
Q ss_conf             7899999999998854115565035863044346788721268731100001---234200001100--11110101356
Q gi|255764494|r  251 TLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFER---LVNHLIQKTVEP--CKKCLQDAGLS  325 (652)
Q Consensus       251 ~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~---l~~~l~~~~~~~--i~~~L~~a~~~  325 (652)
                      ..-+.+|+     .+.-++...          ....+-.+|...--...++.   +...-+.+++..  ...+.+....-
T Consensus       223 ~~ll~~ll-----~~p~F~~~~----------PkStgRe~F~~~wl~~~~~~~~~l~a~Dv~aTL~eltA~tIv~s~~~~  287 (371)
T COG2377         223 EALLARLL-----AHPYFALPA----------PKSTGRELFNLQWLEQHLDDTQLLNAEDVQATLVELTAATIVKSVATL  287 (371)
T ss_pred             HHHHHHHH-----HCCCCCCCC----------CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             79999985-----287656889----------555784310115689887432688989999999997799999998644


Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHHCC-CCCCC----CCCCCCCHHHHHHHHCCC
Q ss_conf             311014663078530567788654101-11111----135653101111100022
Q gi|255764494|r  326 PSDIDEVVLVGGMTRMPKIQQSVQDFF-NKSPS----KGVNPDEVVAMGAAIQAG  375 (652)
Q Consensus       326 ~~~I~~V~lvGGssriP~v~~~i~~~f-g~~~~----~~~npdeaVa~GAA~~a~  375 (652)
                      ..+-+..+++||+.+-|.+.+.+...+ |-++.    ..+++|..=|.+=|+.|.
T Consensus       288 ~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~  342 (371)
T COG2377         288 QGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAW  342 (371)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             5788624762487557899999997568986631120487810346789999999


No 91 
>KOG0681 consensus
Probab=83.82  E-value=0.58  Score=26.01  Aligned_cols=23  Identities=26%  Similarity=0.231  Sum_probs=17.4

Q ss_pred             EEEEECCCCEEEEEEEECCEEEE
Q ss_conf             69980486606999998995599
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNVRV   26 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~~i   26 (652)
                      .|-||.|+..|.+++.....|.+
T Consensus        25 piVIDNGS~~~RaGw~ge~eP~l   47 (645)
T KOG0681          25 PIVIDNGSYECRAGWAGEKEPRL   47 (645)
T ss_pred             CEEEECCCEEEEECCCCCCCCCC
T ss_conf             47994786357502269999540


No 92 
>PRK00877 hisD histidinol dehydrogenase; Reviewed
Probab=81.74  E-value=3.3  Score=20.32  Aligned_cols=49  Identities=31%  Similarity=0.429  Sum_probs=37.7

Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHCC
Q ss_conf             47336985377887402578863442112222222210247-88886034
Q gi|255764494|r  134 TVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA-AALAYGLD  182 (652)
Q Consensus       134 ~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA-Aal~Y~~~  182 (652)
                      -|.+.|+..|+.-+..=-.+++-||.++|.+.+--+--.-| ||++||..
T Consensus       151 GV~~Iv~~tPp~~~g~i~p~il~aa~~~Gv~~iy~~GGaqAIAAlAyGTe  200 (428)
T PRK00877        151 GVKEIVMVTPPQKDGPINPAILAAAQLAGVDEVYKVGGAQAIAALAYGTE  200 (428)
T ss_pred             CCCEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCC
T ss_conf             99817998688988963989999998519235012387999999980778


No 93 
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=81.34  E-value=3.7  Score=19.89  Aligned_cols=69  Identities=25%  Similarity=0.309  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEE
Q ss_conf             99999999983884733698537788740257886344211222222221024788886034456550799872441145
Q gi|255764494|r  121 QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFD  200 (652)
Q Consensus       121 ~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~d  200 (652)
                      .++++..++.++.++  .|+++-..|...  .|..+--.+|--|-.       |.|  --+-...+...+++|+|..|+|
T Consensus        77 e~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~vAAaNW~-------Ata--~~~~e~~~dsci~VD~GSTTtD  143 (330)
T COG1548          77 EDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPREVAAANWV-------ATA--RFLAEEIKDSCILVDMGSTTTD  143 (330)
T ss_pred             HHHHHHHHHHCCCCE--EEEECCCCCCCH--HHHCCHHHHHHHHHH-------HHH--HHHHHHCCCCEEEEECCCCCCC
T ss_conf             999999987428956--999156867676--675388877776469-------999--9999864785699964786332


Q ss_pred             EE
Q ss_conf             43
Q gi|255764494|r  201 VS  202 (652)
Q Consensus       201 vs  202 (652)
                      +-
T Consensus       144 II  145 (330)
T COG1548         144 II  145 (330)
T ss_pred             EE
T ss_conf             47


No 94 
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=81.25  E-value=0.8  Score=24.95  Aligned_cols=66  Identities=26%  Similarity=0.335  Sum_probs=48.3

Q ss_pred             HHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf             0110011110101356311014663078530567788654101111111356531011111000223467
Q gi|255764494|r  310 KTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG  379 (652)
Q Consensus       310 ~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~  379 (652)
                      ++.+.++.-=++++.   .+..+-.=||.|+..++-+...++.|.++.+..+ .|+-|+|||+.|++-.+
T Consensus       387 Q~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~lAGla~G  452 (499)
T COG0554         387 QTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYLAGLAVG  452 (499)
T ss_pred             HHHHHHHHHHHHCCC---CCEEEEECCCCCCCHHHHHHHHHHHCCEEECCCC-CHHHHHHHHHHHHHHHC
T ss_conf             999999999876278---8606997576100457899988872880361465-10368999999765627


No 95 
>pfam00349 Hexokinase_1 Hexokinase. Hexokinase (EC:2.7.1.1) contains two structurally similar domains represented by this family and pfam03727. Some members of the family have two copies of each of these domains.
Probab=80.63  E-value=1.6  Score=22.73  Aligned_cols=31  Identities=26%  Similarity=0.568  Sum_probs=23.8

Q ss_pred             CCCCEEEEEEECCCEEEEEEEEECC-CEEEEE
Q ss_conf             5655079987244114543101023-146542
Q gi|255764494|r  184 KDARTVIVFDFGGGTFDVSLLEMGD-GVFEVK  214 (652)
Q Consensus       184 ~~~~~vlV~D~Gggt~dvsi~~~~~-~~~~vl  214 (652)
                      .+.+.++.+|+||..|-|..+++.+ +.+++.
T Consensus        59 ~E~G~~lAlDlGGTN~RV~~V~L~g~~~~~~~   90 (205)
T pfam00349        59 TEKGDFLALDLGGTNFRVLLVKLTGNGKVEMT   90 (205)
T ss_pred             CCCCEEEEEEECCCEEEEEEEEECCCCCEEEE
T ss_conf             75523999960685489999997699848999


No 96 
>TIGR01311 glycerol_kin glycerol kinase; InterPro: IPR005999    Glycerol kinase (2.7.1.30 from EC) is a bacterial sugar kinase which catalyzes the Mg-ATP-dependent phosphorylation of glycerol to yield glycerol 3-phosphate. The enzyme from Escherichia coli is an allosteric regulatory enzyme whose activity is inhibited by fructose 1,6-bisphosphate (FBP) and the glucose-specific phosphocarrier of the phosphoenolpyruvate:glycose phosphotransferase system, IIA(Glc), structural studies suggest a nucleophilic in-line transfer mechanism for the ATP-dependent phosphorylation of glycerol by glycerol kinase .; GO: 0004370 glycerol kinase activity, 0006072 glycerol-3-phosphate metabolic process.
Probab=80.61  E-value=0.78  Score=25.02  Aligned_cols=189  Identities=20%  Similarity=0.277  Sum_probs=104.9

Q ss_pred             HHCCCCCCCCCCCHHHHHHHHH-CCCC------CCCEEEEEEECCCEEEEEEEEECCCEEE------------EECCCCC
Q ss_conf             2112222222210247888860-3445------6550799872441145431010231465------------4201332
Q gi|255764494|r  159 RIAGLDVLRIINEPTAAALAYG-LDKK------DARTVIVFDFGGGTFDVSLLEMGDGVFE------------VKATNGD  219 (652)
Q Consensus       159 ~~AGl~v~~li~EptAAal~Y~-~~~~------~~~~vlV~D~Gggt~dvsi~~~~~~~~~------------vl~~~gd  219 (652)
                      -.+++++..++=+=-||-++-. +...      ..+.+|++..|-     .++.=..|-+.            +-|-+|-
T Consensus       246 ~g~~iPI~G~lGDQQAAL~GQ~C~~~G~aKnTYGTGcFlL~NTG~-----~~~~S~hgLLTTvay~lgg~~p~~YALEGS  320 (518)
T TIGR01311       246 LGAEIPITGVLGDQQAALFGQACFKPGEAKNTYGTGCFLLMNTGE-----KPVISKHGLLTTVAYQLGGKKPTVYALEGS  320 (518)
T ss_pred             CCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC-----EEEEECCCCEEEEEEEECCCCCCEEEECCH
T ss_conf             078972575000378999998622102332456310110221487-----621435887157778747988722650124


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC-------CCCCCCEEE
Q ss_conf             2455213447665536787642013430244789999999999885411556503586304434-------678872126
Q gi|255764494|r  220 TFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISA-------NSAGAQHLN  292 (652)
Q Consensus       220 ~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~-------~~~~g~d~~  292 (652)
                      -.++|     +.++||.+.++-      -.++..       +|.+=+....+.-+ ..||-+.=       ....|.-+=
T Consensus       321 vfvAG-----AavqWLRD~l~l------i~~a~e-------~E~LA~~V~~~~GV-YFVPAFtGLgAPYWD~~ARG~I~G  381 (518)
T TIGR01311       321 VFVAG-----AAVQWLRDNLKL------IKHAAE-------SEALARSVEDNGGV-YFVPAFTGLGAPYWDPDARGAIFG  381 (518)
T ss_pred             HHHHH-----HHHHHHHHHCCC------CCCHHH-------HHHHHHHCCCCCCE-EEEECCCCCCCCCCCCCCCEEEEE
T ss_conf             88888-----899998752363------579889-------99999726899966-886355568787768222759772


Q ss_pred             -------EEECCCCCCCCCCCCHHHHHHCCCCCCHHCC----CCCEEEEEEEECCCCCCHHHHHHHHHHCCC-CCCCCCC
Q ss_conf             -------8731100001234200001100111101013----563110146630785305677886541011-1111135
Q gi|255764494|r  293 -------MKLTRAQFERLVNHLIQKTVEPCKKCLQDAG----LSPSDIDEVVLVGGMTRMPKIQQSVQDFFN-KSPSKGV  360 (652)
Q Consensus       293 -------~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~----~~~~~I~~V~lvGGssriP~v~~~i~~~fg-~~~~~~~  360 (652)
                             ..|-|+-+|.+|    -.+.++|+.-=+|+|    .....   .=.=||.|+--++-+...++.| .++.+..
T Consensus       382 lTr~T~~~Hi~RA~LEaia----fQ~RDv~~AM~~D~gg~~~~~~~~---LrVDGG~~~NnlLMQ~QADilGC~~V~RP~  454 (518)
T TIGR01311       382 LTRGTTKAHIARAALEAIA----FQTRDVLEAMEKDAGGEEIVELKK---LRVDGGMTNNNLLMQFQADILGCVPVVRPK  454 (518)
T ss_pred             CCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHCCCCCCCCCCC---EEECCHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf             4656567787898999999----989999999875168851035330---001411230167899887675771200067


Q ss_pred             CCCCHHHHHHHHCCCCCCC
Q ss_conf             6531011111000223467
Q gi|255764494|r  361 NPDEVVAMGAAIQAGVLQG  379 (652)
Q Consensus       361 npdeaVa~GAA~~a~~ls~  379 (652)
                      . .|+-|+|||+.|++=.|
T Consensus       455 ~-~EtTALGAA~~AGla~G  472 (518)
T TIGR01311       455 V-TETTALGAAYAAGLAVG  472 (518)
T ss_pred             C-CCCCHHHHHHHHHHHCC
T ss_conf             4-56218999999875401


No 97 
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=80.39  E-value=2.2  Score=21.55  Aligned_cols=48  Identities=29%  Similarity=0.421  Sum_probs=37.0

Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHCC
Q ss_conf             47336985377887402578863442112222222210247-88886034
Q gi|255764494|r  134 TVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA-AALAYGLD  182 (652)
Q Consensus       134 ~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA-Aal~Y~~~  182 (652)
                      -|.++|+..|+. +..--.+++-||.++|.+.+--+--.-| ||++||-.
T Consensus       145 GV~~Ivv~tPp~-~g~i~p~iL~aA~l~Gv~~vy~iGGAqAIAAlAyGTe  193 (424)
T PRK12447        145 GVPRIVACTPPF-PGEPHPAIVAAMHLAGADEIYCLGGVQAVAAMAYGTE  193 (424)
T ss_pred             CCCEEEEECCCC-CCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCC
T ss_conf             998589965999-9999989999999809878985587999999980678


No 98 
>pfam00815 Histidinol_dh Histidinol dehydrogenase.
Probab=80.23  E-value=2.5  Score=21.24  Aligned_cols=49  Identities=29%  Similarity=0.341  Sum_probs=37.7

Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHCC
Q ss_conf             47336985377887402578863442112222222210247-88886034
Q gi|255764494|r  134 TVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA-AALAYGLD  182 (652)
Q Consensus       134 ~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA-Aal~Y~~~  182 (652)
                      -|.++|+..|+.=+..--.+++-||.++|.+-+--+--.-| ||++||..
T Consensus       137 GV~~Ivv~tPP~~~G~i~p~iLaaA~l~Gv~~vy~iGGAQAIAAlAyGTe  186 (413)
T pfam00815       137 GCKKIVLCSPPPKDGKVNPEILYAAHIAGVDEIYKAGGAQAIAAMAYGTE  186 (413)
T ss_pred             CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCC
T ss_conf             99858998178878961989999999809888974588999999972778


No 99 
>pfam03652 UPF0081 Uncharacterized protein family (UPF0081).
Probab=80.08  E-value=2.2  Score=21.61  Aligned_cols=20  Identities=40%  Similarity=0.660  Sum_probs=17.0

Q ss_pred             CEEEEECCCCEEEEEEEECC
Q ss_conf             16998048660699999899
Q gi|255764494|r    3 KVIGIDLGTTNSCVAIMDGK   22 (652)
Q Consensus         3 ~viGIDlGtt~s~va~~~~~   22 (652)
                      .++|||||+.++-+|+.+..
T Consensus         2 riLgiD~G~kriGvAisd~~   21 (134)
T pfam03652         2 RILGLDVGTKRIGVAISDPL   21 (134)
T ss_pred             CEEEEECCCCEEEEEEECCC
T ss_conf             79999808997999993599


No 100
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=79.65  E-value=1.9  Score=22.08  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=18.3

Q ss_pred             CCCEEEEECCCCEEEEEEEECC
Q ss_conf             9816998048660699999899
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDGK   22 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~~   22 (652)
                      |. +||||+|-|+.++++++..
T Consensus         1 M~-~lgiDiGGT~ik~~lvd~~   21 (291)
T PRK05082          1 MT-TLAIDIGGTKIAAALVGED   21 (291)
T ss_pred             CC-EEEEEECCCEEEEEEECCC
T ss_conf             96-9999957340999999599


No 101
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485    This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=79.64  E-value=3.9  Score=19.73  Aligned_cols=116  Identities=23%  Similarity=0.446  Sum_probs=76.5

Q ss_pred             CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf             14654201332245521344766553678764201---343024478999999999988541155650358630443467
Q gi|255764494|r  209 GVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKEN---GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANS  285 (652)
Q Consensus       209 ~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~---~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~  285 (652)
                      |+=.|+=|+|.+-|= .||+..|.. +     +++   .+.+++|--   .|..-|+++|.+  .-..+.|++++     
T Consensus        62 GV~kvKlTGGEPlLR-~D~~~Ii~~-~-----~~~~~~~vSmTTNG~---LL~~~A~~Lk~A--GLdRVNVSLdt-----  124 (324)
T TIGR02668        62 GVRKVKLTGGEPLLR-KDLIEIIRR-I-----KDYGIKDVSMTTNGI---LLEKLAKKLKEA--GLDRVNVSLDT-----  124 (324)
T ss_pred             CCCEEEECCCCCCHH-HHHHHHHHH-H-----CCCCCEEEECCCCHH---HHHHHHHHHHHH--CCCEEEECCCC-----
T ss_conf             883277517874345-669999986-1-----467503442030314---489899999982--85613120267-----


Q ss_pred             CCCCEEEEEECCCCCCCCC---CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCC-CCC-HHHHHHHHHHC
Q ss_conf             8872126873110000123---420000110011110101356311014663078-530-56778865410
Q gi|255764494|r  286 AGAQHLNMKLTRAQFERLV---NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGG-MTR-MPKIQQSVQDF  351 (652)
Q Consensus       286 ~~g~d~~~~itR~~fe~l~---~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGG-ssr-iP~v~~~i~~~  351 (652)
                               +.++.|..+.   ...++++++-|++|++ +||+|=-|+-|+|=|= ... +|-+-+...+|
T Consensus       125 ---------ld~e~Y~kITG~~~~~~~~Vi~GI~~A~~-~GL~PVKlN~Vvl~G~N~~~~~~~m~~f~~~~  185 (324)
T TIGR02668       125 ---------LDPEKYKKITGQSRDALDRVIEGIESAVD-AGLTPVKLNMVVLKGINDNEEIPDMVEFAADY  185 (324)
T ss_pred             ---------CCHHHHHHHCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             ---------88678886448998607899999999997-28981378888754778850079999999875


No 102
>KOG0677 consensus
Probab=79.06  E-value=3.5  Score=20.03  Aligned_cols=194  Identities=18%  Similarity=0.219  Sum_probs=94.5

Q ss_pred             CEEEEEECCCCCCCHHHHHHHH-HHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEE
Q ss_conf             3369853778874025788634-421122222222102478888603445655079987244114543101023146542
Q gi|255764494|r  136 SKAVITVPAYFNDAQRQATKDA-GRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVK  214 (652)
Q Consensus       136 ~~~VitVP~~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl  214 (652)
                      .+..+|-|+---...|+-+.+. .+.-||.-+-+-  -.|...-|+   +.--+-+|+|-|.|-+.++-+  -.|.  ++
T Consensus       102 ~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyva--iQAVLtLYA---QGL~tGvVvDSGDGVTHi~PV--ye~~--~l  172 (389)
T KOG0677         102 CKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVA--IQAVLTLYA---QGLLTGVVVDSGDGVTHIVPV--YEGF--VL  172 (389)
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEH--HHHHHHHHH---HCCCCEEEEECCCCEEEEEEE--ECCE--EH
T ss_conf             74882079989640389999999987188717753--999999997---001011799559980688530--1121--03


Q ss_pred             C-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC-----------CCEEEEEECCCC
Q ss_conf             0-1332245521344766553678764201343024478999999999988541155-----------650358630443
Q gi|255764494|r  215 A-TNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSS-----------TSQTEINLPFIS  282 (652)
Q Consensus       215 ~-~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~-----------~~~~~i~i~~~~  282 (652)
                      . -....++.|+|++.-|++.+..   +-|..+-+.|-.       .....|+.|.-           .-++++-+++..
T Consensus       173 ~HLtrRldvAGRdiTryLi~LLl~---rGYafN~tADFE-------TVR~iKEKLCYisYd~e~e~kLalETTvLv~~Yt  242 (389)
T KOG0677         173 PHLTRRLDVAGRDITRYLIKLLLR---RGYAFNHTADFE-------TVREIKEKLCYISYDLELEQKLALETTVLVESYT  242 (389)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHH---HCCCCCCCCCHH-------HHHHHHHHHEEEEECHHHHHHHHHHHEEEEEEEE
T ss_conf             555433012310689999999986---342335543258-------9999876450475024366676345301245444


Q ss_pred             CCCCCCCEEEEEECCCCCC---CCCCCCHHHH-----HHCCCCCCHHCCCC--CEEEEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf             4678872126873110000---1234200001-----10011110101356--311014663078530567788654101
Q gi|255764494|r  283 ANSAGAQHLNMKLTRAQFE---RLVNHLIQKT-----VEPCKKCLQDAGLS--PSDIDEVVLVGGMTRMPKIQQSVQDFF  352 (652)
Q Consensus       283 ~~~~~g~d~~~~itR~~fe---~l~~~l~~~~-----~~~i~~~L~~a~~~--~~~I~~V~lvGGssriP~v~~~i~~~f  352 (652)
                        ..+|.-  +.+--+.||   .+.+|-+-..     .+++=.+++.+.++  .+--..|+|-||||--|.+-..+++.+
T Consensus       243 --LPDGRv--IkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkEl  318 (389)
T KOG0677         243 --LPDGRV--IKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKEL  318 (389)
T ss_pred             --CCCCCE--EEECCEECCCCHHHCCCCEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHEEECCCCCCCCCCCHHHHHHH
T ss_conf             --699838--9745531358255358644424787689999877777333228888867564388524899737899999


No 103
>KOG0797 consensus
Probab=79.03  E-value=0.45  Score=26.81  Aligned_cols=16  Identities=25%  Similarity=0.380  Sum_probs=11.5

Q ss_pred             CEEEEEEECCCEEEEE
Q ss_conf             5079987244114543
Q gi|255764494|r  187 RTVIVFDFGGGTFDVS  202 (652)
Q Consensus       187 ~~vlV~D~Gggt~dvs  202 (652)
                      ...+.+-|-+|.|.|+
T Consensus       178 ~y~l~~Pir~G~fNv~  193 (618)
T KOG0797         178 PYCLYHPIRRGHFNVS  193 (618)
T ss_pred             CCEEECCCCCCEECCC
T ss_conf             6336504346520368


No 104
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=78.67  E-value=2  Score=21.89  Aligned_cols=48  Identities=31%  Similarity=0.439  Sum_probs=36.7

Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHCC
Q ss_conf             47336985377887402578863442112222222210247-88886034
Q gi|255764494|r  134 TVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA-AALAYGLD  182 (652)
Q Consensus       134 ~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA-Aal~Y~~~  182 (652)
                      -|.++|++.|+.=+. --.+++-||+++|.+-+-.+--.-| |||+||-.
T Consensus       146 Gv~~Iv~~tPp~~~g-v~p~iL~AA~~~Gv~eIy~vGGAQAIAAlAYGTe  194 (425)
T COG0141         146 GVEEIVVVTPPPKDG-VNPEILAAARLAGVDEVYKVGGAQAIAALAYGTE  194 (425)
T ss_pred             CCCEEEEECCCCCCC-CCHHHHHHHHHHCCHHHHHCCCHHHHHHHHCCCC
T ss_conf             886489977999889-8989999999948089887258999999973677


No 105
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=78.52  E-value=4.5  Score=19.26  Aligned_cols=17  Identities=12%  Similarity=0.262  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             13447665536787642
Q gi|255764494|r  225 EDFDSCLVEHICDTFKK  241 (652)
Q Consensus       225 ~d~D~~l~~~~~~~~~~  241 (652)
                      .-+|.+|++||++-|..
T Consensus       227 ~~Vek~lfdY~~~~Y~~  243 (622)
T COG5185         227 LMVEKLLFDYFTESYKS  243 (622)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999


No 106
>PRK13770 histidinol dehydrogenase; Provisional
Probab=78.19  E-value=3  Score=20.63  Aligned_cols=48  Identities=25%  Similarity=0.311  Sum_probs=37.0

Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHCC
Q ss_conf             47336985377887402578863442112222222210247-88886034
Q gi|255764494|r  134 TVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA-AALAYGLD  182 (652)
Q Consensus       134 ~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA-Aal~Y~~~  182 (652)
                      -|.++|+..|+.-+. --.+++-||+++|.+-+--+--.-| ||++||..
T Consensus       140 GV~~Ivv~tPp~~~g-i~~~~Laaa~l~Gv~~vy~vGGAQAIAAlAyGTe  188 (416)
T PRK13770        140 GVENIVVVTPPQPNG-VSQEVLAACYITQVNQVFQVGGAQSIAALTYGTE  188 (416)
T ss_pred             CCCCEEEEECCCCCC-CCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCC
T ss_conf             998138973889899-8989999999839968985588999999980787


No 107
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=77.84  E-value=4.7  Score=19.12  Aligned_cols=49  Identities=31%  Similarity=0.443  Sum_probs=38.1

Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHCC
Q ss_conf             47336985377887402578863442112222222210247-88886034
Q gi|255764494|r  134 TVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA-AALAYGLD  182 (652)
Q Consensus       134 ~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA-Aal~Y~~~  182 (652)
                      -|.++|+..|+.=+..---+++-||+++|.+-+-.+--.-| ||++||..
T Consensus       122 GV~~Ivv~tPP~~~G~i~p~vL~aA~l~Gv~eiy~iGGaQAIAAlAyGTe  171 (390)
T cd06572         122 GVKEIVVVTPPRKDGKINPAILAAAKLAGVDEIYKVGGAQAIAALAYGTE  171 (390)
T ss_pred             CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCC
T ss_conf             89848998688868981999999999839260430488999999972887


No 108
>KOG1369 consensus
Probab=77.57  E-value=4.8  Score=19.06  Aligned_cols=27  Identities=30%  Similarity=0.678  Sum_probs=23.0

Q ss_pred             CCCCEEEEEEECCCEEEEEEEEECCCE
Q ss_conf             565507998724411454310102314
Q gi|255764494|r  184 KDARTVIVFDFGGGTFDVSLLEMGDGV  210 (652)
Q Consensus       184 ~~~~~vlV~D~Gggt~dvsi~~~~~~~  210 (652)
                      ++.+.++.+|+||..|-|..+.+.++.
T Consensus        83 ~E~G~~lalDLGGTn~Rv~~v~L~g~~  109 (474)
T KOG1369          83 TEKGKFLALDLGGTNFRVLLVKLGGGR  109 (474)
T ss_pred             CCCCCEEEEECCCCCEEEEEEEECCCC
T ss_conf             857877999618983699999966996


No 109
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit; InterPro: IPR004486 This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.; GO: 0006730 one-carbon compound metabolic process.
Probab=77.55  E-value=1.7  Score=22.44  Aligned_cols=138  Identities=17%  Similarity=0.211  Sum_probs=70.9

Q ss_pred             EEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHH-------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             998724411454310102314654201332245521344-------7665536787642013430244789999999999
Q gi|255764494|r  190 IVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFD-------SCLVEHICDTFKKENGIDLKQDTLALQRLKEAAE  262 (652)
Q Consensus       190 lV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D-------~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e  262 (652)
                      -++-+||-. ..++.+|+..+-..=..+.      |-||       +.++.||         .|+.+||-.+      |.
T Consensus        93 k~V~lGG~r-slAlYrFeePQPnpPvvtf------DvFDiP~PgLpkpiR~hf---------~DVmedP~eW------Ar  150 (401)
T TIGR00381        93 KTVKLGGQR-SLALYRFEEPQPNPPVVTF------DVFDIPMPGLPKPIREHF---------EDVMEDPAEW------AR  150 (401)
T ss_pred             CEEEECCEE-EEEEECCCCCCCCCCEEEE------EECCCCCCCCCHHHHHHH---------HHHHCCHHHH------HH
T ss_conf             358866703-3200205783434687787------513687578766777765---------6630283358------88


Q ss_pred             HHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCC--
Q ss_conf             885411556503586304434678872126873110000123420000110011110101356311014663078530--
Q gi|255764494|r  263 KAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTR--  340 (652)
Q Consensus       263 ~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssr--  340 (652)
                      ||=+..-++- .+|++=|-...                  +-..--....+.++.+|+-..+.       ++||||-.  
T Consensus       151 KcVK~fGAdm-vTiHlIsTdPk------------------~~Dksp~EAaK~~EdvLQAVdvP-------~viGGSGnpe  204 (401)
T TIGR00381       151 KCVKEFGADM-VTIHLISTDPK------------------VKDKSPKEAAKVLEDVLQAVDVP-------LVIGGSGNPE  204 (401)
T ss_pred             HHHHHHCCCE-EEEEEECCCCC------------------CCCCCHHHHHHHHHHHHHHCCCC-------EEECCCCCCC
T ss_conf             8887627663-88644337885------------------46887224788999876340677-------5774788886


Q ss_pred             -HHHHHHHHHHCC-CCCC---CCCCCCCC-HHHHHHHHCCC
Q ss_conf             -567788654101-1111---11356531-01111100022
Q gi|255764494|r  341 -MPKIQQSVQDFF-NKSP---SKGVNPDE-VVAMGAAIQAG  375 (652)
Q Consensus       341 -iP~v~~~i~~~f-g~~~---~~~~npde-aVa~GAA~~a~  375 (652)
                       =|.|-|.-.+.- |..+   +-+++-|. =||.-|-=|.+
T Consensus       205 KDPlVLEkaAEvAEGeR~lLASAnLdlDy~kia~AA~ky~H  245 (401)
T TIGR00381       205 KDPLVLEKAAEVAEGERCLLASANLDLDYKKIANAALKYDH  245 (401)
T ss_pred             CCHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf             67578998843113621645413513457899999853498


No 110
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=75.90  E-value=3  Score=20.63  Aligned_cols=21  Identities=33%  Similarity=0.615  Sum_probs=17.4

Q ss_pred             CEEEEECCCCEEEEEEEECCE
Q ss_conf             169980486606999998995
Q gi|255764494|r    3 KVIGIDLGTTNSCVAIMDGKN   23 (652)
Q Consensus         3 ~viGIDlGtt~s~va~~~~~~   23 (652)
                      .++|||||+..+-+|+.+..+
T Consensus         2 rvLgiD~G~kriG~Ai~D~~~   22 (99)
T smart00732        2 RVLGLDPGRKGIGVAVVDETG   22 (99)
T ss_pred             CEEEEEECCCCEEEEEEECCC
T ss_conf             799992178969999998999


No 111
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=74.41  E-value=4.4  Score=19.35  Aligned_cols=73  Identities=30%  Similarity=0.533  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHH------HHCCC---------CCEEEEEECCCCC---CCHH-------HHHHH----HHHHCCCCCC--C
Q ss_conf             99999999999------83884---------7336985377887---4025-------78863----4421122222--2
Q gi|255764494|r  119 VLQKMKETAES------FLGET---------VSKAVITVPAYFN---DAQR-------QATKD----AGRIAGLDVL--R  167 (652)
Q Consensus       119 iL~~lk~~ae~------~l~~~---------v~~~VitVP~~f~---~~qR-------~a~~~----Aa~~AGl~v~--~  167 (652)
                      .|.+|+.+|.+      ++|.-         |..-+|.-|.|||   +.|-       ||+.+    -|.+-||++.  .
T Consensus        62 ~l~~l~~ia~kN~~~~sfiG~GyY~~~~P~vI~rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANAS  141 (450)
T COG0403          62 ALAELKEIASKNKVFTSFIGAGYYDTYTPPVILRNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANAS  141 (450)
T ss_pred             HHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf             99999999870661454256864687182788887643854223678886366657999999899999998588744500


Q ss_pred             CCCCHHHHH----HHHHCCCCCCCEEEE
Q ss_conf             221024788----886034456550799
Q gi|255764494|r  168 IINEPTAAA----LAYGLDKKDARTVIV  191 (652)
Q Consensus       168 li~EptAAa----l~Y~~~~~~~~~vlV  191 (652)
                      +++|.||+|    ++|.+.+.....++|
T Consensus       142 m~DeaTAaAEAm~ma~r~~k~k~~~~~V  169 (450)
T COG0403         142 MLDEATAAAEAMLMAKRVTKKKRNKFLV  169 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             2316769999999998741476734996


No 112
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=73.96  E-value=3.4  Score=20.16  Aligned_cols=52  Identities=25%  Similarity=0.254  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCCC
Q ss_conf             34200001100111101013563110146630785305--67788654101111
Q gi|255764494|r  304 VNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNKS  355 (652)
Q Consensus       304 ~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~~  355 (652)
                      ..|--+.....++++|+++++.+++|+.|..-|-+|..  |.=-+.|.+.||..
T Consensus       201 t~P~~~~~~~~~~~al~~ag~~~~~i~yI~aHgtgT~~gD~~E~~ai~~~fg~~  254 (336)
T PRK09116        201 TQPQAETMQIAMELALKDAGLAPEDIGYVNAHGTATDRGDIAESQATAAVFGAR  254 (336)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             897999999999999997098802122899537778888999999999985767


No 113
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=73.50  E-value=1.4  Score=23.05  Aligned_cols=50  Identities=28%  Similarity=0.171  Sum_probs=37.3

Q ss_pred             CCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCC
Q ss_conf             34200001100111101013563110146630785305--677886541011
Q gi|255764494|r  304 VNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFN  353 (652)
Q Consensus       304 ~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg  353 (652)
                      ..|-.+.....++++|++++++++|||.|+.-|.++|+  +.=.+.+.+.|+
T Consensus       140 ~~p~~~~~~~~i~~al~~agl~~~dId~v~~H~tgt~i~D~iE~~a~~~~~~  191 (254)
T cd00327         140 PAVSGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPDG  191 (254)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCCCCHHHHHHHCCCCCC
T ss_conf             2788789999999999983998645257997888783545999986534006


No 114
>TIGR00069 hisD histidinol dehydrogenase; InterPro: IPR001692   Histidinol dehydrogenase (1.1.1.23 from EC) (HDH) catalyses the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine.   In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His . The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules . By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme . A Cys residue has been implicated in the catalytic mechanism of the second oxidative step .   In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast .; GO: 0004399 histidinol dehydrogenase activity, 0000105 histidine biosynthetic process.
Probab=73.39  E-value=2.6  Score=21.09  Aligned_cols=48  Identities=27%  Similarity=0.372  Sum_probs=37.1

Q ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHCC
Q ss_conf             7336985377887402578863442112222222210247-88886034
Q gi|255764494|r  135 VSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA-AALAYGLD  182 (652)
Q Consensus       135 v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA-Aal~Y~~~  182 (652)
                      |+++|++-|+.=+-.=--.++=||.++|+.-+--+=---| ||||||-.
T Consensus       148 vekIV~ctPP~KDG~v~p~~LvaA~~~Gv~~iY~~GGAQAiAA~AYGTE  196 (435)
T TIGR00069       148 VEKIVLCTPPDKDGKVSPEVLVAADLAGVSEIYKVGGAQAIAAMAYGTE  196 (435)
T ss_pred             EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf             6789986586998887826777766832688875016999999861776


No 115
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex.
Probab=72.23  E-value=2.4  Score=21.31  Aligned_cols=97  Identities=29%  Similarity=0.414  Sum_probs=60.0

Q ss_pred             ECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCE-EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             311000012342000011001111010135631-1014663078530567788654101111111356531011111000
Q gi|255764494|r  295 LTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPS-DIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQ  373 (652)
Q Consensus       295 itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~-~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~  373 (652)
                      |--.+|+..+.+   +..+...++++..|.+.+ +| .++.|=|+--+|++-+.|-+.= +++.+.+  |=.|++||-+.
T Consensus         5 ~v~ARFN~~It~---~L~~gA~d~~~~~G~~~~~~i-~~~~VPGafElP~~~~kL~~~~-~klGkP~--DAVi~LG~VIr   77 (148)
T TIGR00114         5 IVIARFNRFITD---KLLEGAIDALKRLGAEVDENI-DVIRVPGAFELPLAVKKLAESG-KKLGKPY--DAVIALGAVIR   77 (148)
T ss_pred             EEEEHHHHHHHH---HHHHHHHHHHHHCCCCCCCCE-EEEECCCCCCHHHHHHHHHHHH-HHCCCCC--CEEEECCEEEE
T ss_conf             877122068999---899999999996689527863-5897068311268999998500-2017963--35885114773


Q ss_pred             CCCCCCC---------CCCHHEECCCCCCCCCCC
Q ss_conf             2234675---------221000023566532223
Q gi|255764494|r  374 AGVLQGD---------VKDLLLLDVTPLSLGIET  398 (652)
Q Consensus       374 a~~ls~~---------~~~~~~~dv~p~slgie~  398 (652)
                      ++.-+-+         +-++.+.--.|-.+||-|
T Consensus        78 G~T~HfeyV~~~A~~gia~~a~~~~~PV~fGilT  111 (148)
T TIGR00114        78 GGTPHFEYVADEAAKGIADLALDYDVPVIFGILT  111 (148)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf             7966557777789999999998659877603328


No 116
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR014276   This entry represents the mainly actinobacterial clade of the E2 component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (IPR001078 from INTERPRO), one or two biotin domains (IPR000089 from INTERPRO) and an E3-component binding domain (IPR004167 from INTERPRO)..
Probab=72.14  E-value=6.1  Score=18.27  Aligned_cols=67  Identities=22%  Similarity=0.392  Sum_probs=44.5

Q ss_pred             CCCCCCHHEECCCCCCCCCCCCCCEEEEEEC--CCCCCC--HHHHHHH-HHHHHHCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf             6752210000235665322233420246633--898110--2456654-5676412221100001222222222334531
Q gi|255764494|r  378 QGDVKDLLLLDVTPLSLGIETLGGVFTSIID--RNSTIP--TKKSQVF-STAADNQSAVSIRIGQGERKMFADNKLLGQF  452 (652)
Q Consensus       378 s~~~~~~~~~dv~p~slgie~~~~~~~~ii~--~~~~iP--~~k~~~f-~t~~d~q~~i~i~v~eGe~~~~~~n~~lg~~  452 (652)
                      +.+.|++.++|+..++|-+.|..|..+++|.  ..-.||  .++...+ -+..||.-             -.|.-.=|+|
T Consensus       451 N~etKe~TYhd~eh~giAVDTp~GLL~PVi~NAgDLslpglAkaI~DlAaRaR~nkl-------------kPdeLsGgTF  517 (607)
T TIGR02927       451 NEETKEVTYHDAEHLGIAVDTPRGLLVPVIHNAGDLSLPGLAKAIADLAARARDNKL-------------KPDELSGGTF  517 (607)
T ss_pred             CCCCCEEEEEEEEEEEEEEECCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCC-------------CCCCCCCCCE
T ss_conf             468750313431020146547888634623125657736799999889987534787-------------8540258732


Q ss_pred             CCCCC
Q ss_conf             02456
Q gi|255764494|r  453 DLVGI  457 (652)
Q Consensus       453 ~i~~i  457 (652)
                      +|+||
T Consensus       518 TITNi  522 (607)
T TIGR02927       518 TITNI  522 (607)
T ss_pred             EEECC
T ss_conf             56400


No 117
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=71.97  E-value=3.8  Score=19.84  Aligned_cols=56  Identities=23%  Similarity=0.410  Sum_probs=41.2

Q ss_pred             HHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCCCC-CCCCCCC
Q ss_conf             0001100111101013563110146630785305--677886541011111-1135653
Q gi|255764494|r  308 IQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNKSP-SKGVNPD  363 (652)
Q Consensus       308 ~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~~~-~~~~npd  363 (652)
                      -......++++|++++++++||+.|..-|=+|..  +.=...|++.||..+ ..++.+.
T Consensus       251 g~~~~~am~~al~~agi~~~~Idyi~aHgtgT~~~D~~E~~ai~~vfg~~~~v~s~Ks~  309 (379)
T PRK05952        251 GKSAILAIQQCLARSGLTPEDIDYIHAHGTATRLNDQREANLIQTLFPHRVAVSSTKGA  309 (379)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             89999999999998499833352899467878776999999999971877887787433


No 118
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=71.89  E-value=3.8  Score=19.79  Aligned_cols=52  Identities=25%  Similarity=0.217  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf             234200001100111101013563110146630785305--6778865410111
Q gi|255764494|r  303 LVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK  354 (652)
Q Consensus       303 l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~  354 (652)
                      ...|--+.....++++|+++++++++|+.|..-|.++..  +.=.+.|.+.|+.
T Consensus       199 ~~~p~~~~~~~ai~~Al~~agi~p~~I~yI~ahgtGt~~~D~~E~~Al~~~fg~  252 (332)
T cd00825         199 AFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKELKLLRSEFGD  252 (332)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
T ss_conf             879799999999999999849882001479917786855559999999998578


No 119
>PRK13329 pantothenate kinase; Reviewed
Probab=71.85  E-value=6.2  Score=18.22  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=19.2

Q ss_pred             CCCEEEEECCCCEEEEEEEECCEE
Q ss_conf             981699804866069999989955
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDGKNV   24 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~~~~   24 (652)
                      |. ++-||.|||+.+.+++++++.
T Consensus         1 Mm-~L~iDIGNT~ik~~~~~~~~~   23 (246)
T PRK13329          1 MT-FLAIDVGNTRLKWGLYDAAGA   23 (246)
T ss_pred             CC-EEEEEECCCEEEEEEEECCCC
T ss_conf             97-999997788059999988997


No 120
>PRK09698 D-allose kinase; Provisional
Probab=70.03  E-value=4.2  Score=19.46  Aligned_cols=20  Identities=35%  Similarity=0.657  Sum_probs=17.0

Q ss_pred             EEEEECCCCEEEEEEEECCE
Q ss_conf             69980486606999998995
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKN   23 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~   23 (652)
                      |||||+|-|+..+++++..+
T Consensus         6 viGIDiGGT~i~~~l~d~~g   25 (302)
T PRK09698          6 VAGIDMGATHIRFCLVDAEG   25 (302)
T ss_pred             EEEEEECCCEEEEEEECCCC
T ss_conf             99999873249999996999


No 121
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=69.63  E-value=3.9  Score=19.68  Aligned_cols=50  Identities=20%  Similarity=0.186  Sum_probs=39.3

Q ss_pred             CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf             4200001100111101013563110146630785305--6778865410111
Q gi|255764494|r  305 NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK  354 (652)
Q Consensus       305 ~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~  354 (652)
                      .|--......++++|++|++.+++|+.|..-|-+|+.  +.=-+.|++.||.
T Consensus       285 ~p~~~~~~~~~~~al~~Ag~~~~~i~~i~aHgtgT~~~D~~E~~ai~~~fg~  336 (425)
T PRK06501        285 SPDGSPAIGCVRAALADAGLTEDQIDYINAHGTSTPENDKMEYLGLSAVFGE  336 (425)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
T ss_conf             9886999999999999829882451379805876867679999999998635


No 122
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination.  HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's.  These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR.  RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=69.33  E-value=3.5  Score=20.08  Aligned_cols=19  Identities=26%  Similarity=0.693  Sum_probs=16.4

Q ss_pred             CEEEEECCCCEEEEEEEEC
Q ss_conf             1699804866069999989
Q gi|255764494|r    3 KVIGIDLGTTNSCVAIMDG   21 (652)
Q Consensus         3 ~viGIDlGtt~s~va~~~~   21 (652)
                      .|+|||-|++++-+|+++.
T Consensus         1 RILGIDPGl~~~G~aiie~   19 (154)
T cd00529           1 RILGIDPGSRNTGYGVIEQ   19 (154)
T ss_pred             CEEEECCCCCCCEEEEEEE
T ss_conf             9699875668715999995


No 123
>COG4499 Predicted membrane protein [Function unknown]
Probab=69.06  E-value=7.4  Score=17.62  Aligned_cols=15  Identities=20%  Similarity=0.441  Sum_probs=9.3

Q ss_pred             CHHHHHHHHHHCCCC
Q ss_conf             056778865410111
Q gi|255764494|r  340 RMPKIQQSVQDFFNK  354 (652)
Q Consensus       340 riP~v~~~i~~~fg~  354 (652)
                      .+|+.+-.+.++||.
T Consensus       211 ~VpK~k~~ifk~~gi  225 (434)
T COG4499         211 FVPKKKYTIFKYFGI  225 (434)
T ss_pred             ECCCCCCEEHHHHHH
T ss_conf             603555111146888


No 124
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=68.64  E-value=5.5  Score=18.58  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=17.9

Q ss_pred             CCEEEEECCCCEEEEEEEECCE
Q ss_conf             8169980486606999998995
Q gi|255764494|r    2 SKVIGIDLGTTNSCVAIMDGKN   23 (652)
Q Consensus         2 s~viGIDlGtt~s~va~~~~~~   23 (652)
                      -.++|+||||..+-||+.+...
T Consensus         2 ~~ilalD~G~KrIGvA~sd~~~   23 (141)
T COG0816           2 MRILALDVGTKRIGVAVSDILG   23 (141)
T ss_pred             CEEEEEECCCCEEEEEEECCCC
T ss_conf             6499996278748899764777


No 125
>PRK00865 glutamate racemase; Provisional
Probab=68.07  E-value=3.2  Score=20.33  Aligned_cols=41  Identities=27%  Similarity=0.455  Sum_probs=32.2

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             10146630785305677886541011111113565310111110
Q gi|255764494|r  328 DIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAA  371 (652)
Q Consensus       328 ~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA  371 (652)
                      ++|.++|  |+|.-|.+++.|++++|..+ +-+||-++||+-..
T Consensus       174 ~iDtlIL--GCTHYP~l~~~i~~~~~~~v-~iIDpa~~vA~~v~  214 (262)
T PRK00865        174 GIDTLVL--GCTHYPLLKPEIQQVLGEGV-TLIDSGEAIARRVA  214 (262)
T ss_pred             CCCEEEE--CCCCHHHHHHHHHHHCCCCC-EEECCHHHHHHHHH
T ss_conf             9988997--67670778999999759998-99728899999999


No 126
>PRK00061 ribH riboflavin synthase subunit beta; Provisional
Probab=67.98  E-value=2.7  Score=20.98  Aligned_cols=78  Identities=27%  Similarity=0.432  Sum_probs=52.9

Q ss_pred             CCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf             88721268731100001234200001100111101013563110146630785305677886541011111113565310
Q gi|255764494|r  286 AGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEV  365 (652)
Q Consensus       286 ~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdea  365 (652)
                      .++..+++-|=.+.|++-+   .++..+-..+.|...|...++|+ ++-|-|+--+|..-+.+.+        +-++|-.
T Consensus         8 ~~~~~~rI~IV~s~~n~~I---t~~L~~ga~~~L~~~g~~~~~i~-~~~VPGa~EiP~a~~~l~~--------~~~~Dav   75 (154)
T PRK00061          8 LDAKGLRIGIVVARFNDFI---TDALLEGAIDALKRHGVSEENID-VVRVPGAFEIPLAAKKLAE--------SGKYDAV   75 (154)
T ss_pred             CCCCCCEEEEEEECCCHHH---HHHHHHHHHHHHHHCCCCHHHEE-EEECCCHHHHHHHHHHHHH--------CCCCCEE
T ss_conf             2688989999980385899---99999999999998599931269-9987968889999999986--------3998879


Q ss_pred             HHHHHHHCCC
Q ss_conf             1111100022
Q gi|255764494|r  366 VAMGAAIQAG  375 (652)
Q Consensus       366 Va~GAA~~a~  375 (652)
                      ||.||-+.+.
T Consensus        76 IalG~VIkGe   85 (154)
T PRK00061         76 IALGAVIRGE   85 (154)
T ss_pred             EEEEEEEECC
T ss_conf             9999998189


No 127
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=67.90  E-value=3.7  Score=19.86  Aligned_cols=50  Identities=20%  Similarity=0.247  Sum_probs=40.0

Q ss_pred             CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf             4200001100111101013563110146630785305--6778865410111
Q gi|255764494|r  305 NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK  354 (652)
Q Consensus       305 ~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~  354 (652)
                      .|--+.....++++|+++++++++|+.|..-|=+|..  |.=-+.|++.||.
T Consensus       282 ~p~g~~~~~am~~Al~~agl~p~~IdyI~aHGTgT~~gD~~E~~Ai~~vfg~  333 (418)
T PRK07910        282 DPNGERAGHAMTRAIQLAGLTPTDIDHVNAHATGTSVGDVAEGRAINNALGG  333 (418)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
T ss_conf             9980789999999999828995340779956777876699999999998669


No 128
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated
Probab=67.82  E-value=4.6  Score=19.21  Aligned_cols=66  Identities=17%  Similarity=0.117  Sum_probs=45.7

Q ss_pred             CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCCCC-CCCCCCCCHHHHHH
Q ss_conf             4200001100111101013563110146630785305--677886541011111-11356531011111
Q gi|255764494|r  305 NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNKSP-SKGVNPDEVVAMGA  370 (652)
Q Consensus       305 ~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~~~-~~~~npdeaVa~GA  370 (652)
                      .|-.+.....++++|+++++++++|+.|..-|=+|+.  +.=-+.|++.||..+ ..++.+..--..||
T Consensus       281 ~p~~~g~~~am~~Al~~Agl~~~~IdyI~aHgTgT~~~D~~E~~Al~~~fg~~~~v~S~Ks~~GH~lgA  349 (415)
T PRK07103        281 APSLDGEMAVIRGALRRAGLGPADIDYVNPHGTGSVLGDATELDALRASGLAHARINTTKSLVGHGLSA  349 (415)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCEECCCHHHHHCHHH
T ss_conf             997799999999999982978123077981487676769999999999708998675864432035799


No 129
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=67.14  E-value=4.7  Score=19.12  Aligned_cols=44  Identities=20%  Similarity=0.251  Sum_probs=28.2

Q ss_pred             HHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf             0001100111101013563110146630785305677886541011
Q gi|255764494|r  308 IQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN  353 (652)
Q Consensus       308 ~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg  353 (652)
                      +..+.+.++++|++++++++|||.+++-=.+-||  ++...++++|
T Consensus       270 v~~~~~~i~~~L~~~gl~~~DId~~v~HQAN~ri--i~~i~k~llg  313 (372)
T PRK07515        270 CPMVAEHIVEHLAENGLTPADVKRLWLHQANINM--NQLIGKKVLG  313 (372)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHCCEEEECCCCHHH--HHHHHHHHCC
T ss_conf             9999999999999829898889999867789999--9999998545


No 130
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=67.03  E-value=8.1  Score=17.34  Aligned_cols=65  Identities=14%  Similarity=0.160  Sum_probs=34.4

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--ECCC--CCCCHHHHHHHHH---HHCCCCCCCCCCCH
Q ss_conf             5871999999999999999999838847336985--3778--8740257886344---21122222222102
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVIT--VPAY--FNDAQRQATKDAG---RIAGLDVLRIINEP  172 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~Vit--VP~~--f~~~qR~a~~~Aa---~~AGl~v~~li~Ep  172 (652)
                      +.++|++|.+..++.+.+....--...|+++++.  .|+.  .-...|++.+.|.   ...++.+-|..-..
T Consensus        22 ~~~~~~~L~a~~i~~~l~r~~~i~~~~Id~Vi~G~~~~~g~~g~n~aR~~aL~aGlp~~vpa~TVnr~C~SG   93 (400)
T PRK13359         22 SSVRADDLGAVPLKALVERNRDVDWAAIDDVIYGCANQAGEDNRNVARMSLLLAGLPHGVPGTTINRLCGSG   93 (400)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCHHHHH
T ss_conf             999889999999999997269979899997999827755654576899999976999887626761321149


No 131
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.02  E-value=8.1  Score=17.33  Aligned_cols=57  Identities=25%  Similarity=0.409  Sum_probs=29.3

Q ss_pred             EECCCCCCCHHHHHHHHHH---HCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEE
Q ss_conf             5377887402578863442---112222222210247888860344565507998724411454310
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGR---IAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLL  204 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~---~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~  204 (652)
                      -+|.+|+-     ++.|+.   -++-.. -+++.--||+..-.++.... ..+|+|+|-|++...++
T Consensus       185 eiPe~FtR-----Mraaa~sal~~~t~a-v~mDskfaav~gal~dpaa~-palvVd~GngHttaalv  244 (342)
T COG4012         185 EIPESFTR-----MRAAAMSALSAGTDA-VAMDSKFAAVMGALVDPAAD-PALVVDYGNGHTTAALV  244 (342)
T ss_pred             CCCHHHHH-----HHHHHHHHHHCCCEE-EEECCHHHHHHHCCCCCCCC-CEEEEECCCCCEEEEEE
T ss_conf             68566789-----999999887447248-99715037665400474558-35999806872578885


No 132
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=66.90  E-value=8.1  Score=17.32  Aligned_cols=66  Identities=14%  Similarity=0.108  Sum_probs=39.8

Q ss_pred             EECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             9579587199999999999999999983884733698537788740257886344211222222221024788
Q gi|255764494|r  104 EAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       104 ~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .++++.++.+++.+.    |+....   +.+-..++|..-..-...+--.+.++|+.||+.-+.|+.|++|.|
T Consensus        75 ~~~~~~v~~~~L~~~----l~~~~~---~~~~~~v~i~aD~~~~y~~vv~Vmd~~~~aG~~kv~lvte~~~~~  140 (141)
T PRK11267         75 FIGNDPVTDETMITA----LDALTE---GKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEETAKA  140 (141)
T ss_pred             EECCCCCCHHHHHHH----HHHHHH---CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             877803579999999----999983---289962999758998688999999999986998699984686567


No 133
>PRK13326 pantothenate kinase; Reviewed
Probab=66.77  E-value=8.1  Score=17.32  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=20.5

Q ss_pred             CCCEEEEECCCCEEEEEEEECCEEE
Q ss_conf             9816998048660699999899559
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDGKNVR   25 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~~~~~   25 (652)
                      ||.-+-||.|+||.+.++++++...
T Consensus         5 ~~m~L~IDIGNT~ik~g~~~~~~l~   29 (262)
T PRK13326          5 LSSQLIIDIGNTSISFALYKDNKMQ   29 (262)
T ss_pred             CCCEEEEEECCCCEEEEEEECCEEE
T ss_conf             3665899987871599999899999


No 134
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=66.58  E-value=8.2  Score=17.27  Aligned_cols=48  Identities=29%  Similarity=0.376  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             9999999999983884733698537788740257886344211222222221024
Q gi|255764494|r  119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPT  173 (652)
Q Consensus       119 iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~Ept  173 (652)
                      ++..+++..+..   ..+-.||.||+.|   ...|+++|. -||+..+-+|.|..
T Consensus        53 Vf~tV~EA~~~~---~a~~svI~Vp~~~---aadai~EAi-da~i~liv~ITEgI  100 (293)
T COG0074          53 VFNTVEEAVKET---GANASVIFVPPPF---AADAILEAI-DAGIKLVVIITEGI  100 (293)
T ss_pred             HHHHHHHHHHHH---CCCEEEEECCCHH---HHHHHHHHH-HCCCCEEEEEECCC
T ss_conf             789999998702---8977999648177---899999998-57995799995999


No 135
>TIGR01382 PfpI intracellular protease, PfpI family; InterPro: IPR006286   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad .    This group of cysteine peptidases belong to MEROPS peptidase family C56 (Pfp1 endopeptidase, clan PC(C)).   The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallises as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. This family is contained in a larger one of the thiamine biosynthesis protein ThiJ and its homologs.; GO: 0016798 hydrolase activity acting on glycosyl bonds.
Probab=65.58  E-value=3.1  Score=20.44  Aligned_cols=53  Identities=32%  Similarity=0.570  Sum_probs=37.6

Q ss_pred             CCCCEEEEEEEECCCCCC------HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC--CCCCCCC
Q ss_conf             356311014663078530------567788654101111111356531011111000--2234675
Q gi|255764494|r  323 GLSPSDIDEVVLVGGMTR------MPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQ--AGVLQGD  380 (652)
Q Consensus       323 ~~~~~~I~~V~lvGGssr------iP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~--a~~ls~~  380 (652)
                      ++++++-|.+++.||.+.      -+.+.+++++++.+.  +.   --|++.|+-+.  |.+|+|+
T Consensus        71 ~v~~~~YDal~ipGG~a~~e~LR~d~~~~~lvR~f~e~g--K~---vaaIChgp~lLi~A~VlrGk  131 (189)
T TIGR01382        71 DVDPEDYDALVIPGGRASPEYLRLDEKVIRLVREFVEKG--KP---VAAICHGPQLLISAGVLRGK  131 (189)
T ss_pred             CCCHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC--CE---EEEEECCCEEEEECCEECCC
T ss_conf             478525647897177356000148768999999984178--81---99984530000025510375


No 136
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=65.41  E-value=8.6  Score=17.12  Aligned_cols=58  Identities=19%  Similarity=0.294  Sum_probs=31.2

Q ss_pred             HHHHCCCCCCHHCCCCCEEEEEEEECCCCCC---HHHHHHHHHHCC-CCC-C--CCCCCCC-CHHHHHHHHCC
Q ss_conf             0110011110101356311014663078530---567788654101-111-1--1135653-10111110002
Q gi|255764494|r  310 KTVEPCKKCLQDAGLSPSDIDEVVLVGGMTR---MPKIQQSVQDFF-NKS-P--SKGVNPD-EVVAMGAAIQA  374 (652)
Q Consensus       310 ~~~~~i~~~L~~a~~~~~~I~~V~lvGGssr---iP~v~~~i~~~f-g~~-~--~~~~npd-eaVa~GAA~~a  374 (652)
                      .....++.+|+..       +-=+.||||..   =|.|-+.-.+.. |.. .  +.++|-| +.||.-|--|.
T Consensus       186 EAak~lEdvLqAV-------dvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSanldlDy~~ia~AA~ky~  251 (403)
T COG2069         186 EAAKTLEDVLQAV-------DVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASANLDLDYERIAEAALKYD  251 (403)
T ss_pred             HHHHHHHHHHHHC-------CCCEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCC
T ss_conf             9999999999754-------86889668999764979999998761576477511555667999999998649


No 137
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=65.34  E-value=3.7  Score=19.90  Aligned_cols=77  Identities=26%  Similarity=0.361  Sum_probs=50.8

Q ss_pred             CCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf             72126873110000123420000110011110101356311014663078530567788654101111111356531011
Q gi|255764494|r  288 AQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVA  367 (652)
Q Consensus       288 g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa  367 (652)
                      +..+++-|-..+|+..+.   +++..-...+|++.|-..++| .|+.|=|+--||.+.+.|.+--        .-|-.|+
T Consensus        10 ~~~~riaIV~arfn~~I~---d~ll~gA~~~l~~~G~~~~~i-~vv~VPGa~EiPl~a~~La~~~--------~yDAvv~   77 (152)
T COG0054          10 AKGLRIAIVVARFNDDIT---DALLEGAVDALKRHGADVDNI-DVVRVPGAFEIPLAAKKLARTG--------KYDAVVA   77 (152)
T ss_pred             CCCCEEEEEEEEHHHHHH---HHHHHHHHHHHHHCCCCCCCC-EEEEECCCCHHHHHHHHHHHCC--------CCCEEEE
T ss_conf             777569999754327999---999999999999829974452-6998287232689999997318--------9566999


Q ss_pred             HHHHHCCCC
Q ss_conf             111000223
Q gi|255764494|r  368 MGAAIQAGV  376 (652)
Q Consensus       368 ~GAA~~a~~  376 (652)
                      .||-+.+..
T Consensus        78 lG~VIrG~T   86 (152)
T COG0054          78 LGAVIRGET   86 (152)
T ss_pred             EEEEEECCC
T ss_conf             646981797


No 138
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase; InterPro: IPR002292 The ornithine carbamoyltransferases are a family of enzymes that catalyse the production of citrulline from carbamoyl-phosphate and ornithine . This reaction is part of the arginine biosynthetic pathway, and in some organisms the reaction is also part of the arginine deaminase pathway . In most prokaryotes, and some lower eukaryotes, the enzyme is found in the cytoplasm, but in higher eukaryotes, such as mammals, the enzyme is found in the mitochondrial matrix and functions as part of the urea cycle. In most organisms analysed to date, the enzyme has been shown to consist of a trimer of identical or nonidentical subunits . Extensive similarity has been found within the ornithine carbamoyltransferase family, some of the conserved areas being important in catalysis .   The C-terminal region of these enzymes shows a degree of similarity to the aspartate carbamoyltransferases, which are also known to bind carbamoyl- phosphate . This region contains a highly conserved Cys residue (in a His-Cys-Lys-Pro motif) implicated in ornithine binding . ; GO: 0004585 ornithine carbamoyltransferase activity, 0006520 amino acid metabolic process, 0009348 ornithine carbamoyltransferase complex.
Probab=65.28  E-value=8.7  Score=17.10  Aligned_cols=46  Identities=22%  Similarity=0.321  Sum_probs=24.5

Q ss_pred             HHHHHHHCC--------CCCCCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHH
Q ss_conf             002067549--------8687267876520198699975998279995795871999999999
Q gi|255764494|r   66 IFAAKRLIG--------RRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVL  120 (652)
Q Consensus        66 i~~~KrliG--------~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL  120 (652)
                      |.+.-|-||        |.|.+..++...++....|         |..-...+.|.|++|.+|
T Consensus        90 i~DTARVLsRyVD~I~~R~~~h~~v~~lA~yasVPV---------INgLtD~~HPcQ~LADll  143 (341)
T TIGR00658        90 IKDTARVLSRYVDGIMARVYKHEDVEELAKYASVPV---------INGLTDLFHPCQALADLL  143 (341)
T ss_pred             CCCHHHHHCCEEEEEEEECCCHHHHHHHHHHCCCCE---------ECCCCCCCCHHHHHHHHH
T ss_conf             000110203156567773255378999985489854---------605568552379999988


No 139
>pfam02801 Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain. The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=65.11  E-value=3.6  Score=20.00  Aligned_cols=52  Identities=25%  Similarity=0.341  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCCC
Q ss_conf             34200001100111101013563110146630785305--67788654101111
Q gi|255764494|r  304 VNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNKS  355 (652)
Q Consensus       304 ~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~~  355 (652)
                      ..|--......++++|+++++++++|+.|..-|-+|..  |.=-+.|.+.|+..
T Consensus        20 ~~P~~~~~~~~i~~Al~~agi~p~~I~~i~aHgtgT~~gD~~E~~ai~~~f~~~   73 (117)
T pfam02801        20 TAPNGPAQARAIRAALADAGLDPEDVDYVEAHGTGTPLGDPIEAEALKAVFGPG   73 (117)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCC
T ss_conf             791999999999999999098998979898753768543799999999996637


No 140
>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=64.62  E-value=4.8  Score=19.04  Aligned_cols=51  Identities=22%  Similarity=0.308  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf             34200001100111101013563110146630785305--6778865410111
Q gi|255764494|r  304 VNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK  354 (652)
Q Consensus       304 ~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~  354 (652)
                      ..|--......++++|++|++.+++|+.|+.-|-+|.+  +.=-+.|++.|+.
T Consensus       274 ~~P~~~~~~~~~~~Al~~a~i~p~~I~yieaHgtgt~~gD~~E~~al~~~f~~  326 (424)
T smart00825      274 TAPSGPAQARLIRQALARAGVDPADVDYVEAHGTGTPLGDPIEAEALAAVFGQ  326 (424)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
T ss_conf             89998999999999999829896646879960366877799999999999623


No 141
>PRK08142 acetyl-CoA acetyltransferase; Provisional
Probab=64.50  E-value=4  Score=19.67  Aligned_cols=17  Identities=18%  Similarity=0.045  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHCCCCH
Q ss_conf             65536787642013430
Q gi|255764494|r  231 LVEHICDTFKKENGIDL  247 (652)
Q Consensus       231 l~~~~~~~~~~~~~~d~  247 (652)
                      ++-.+..++-.+|+.+.
T Consensus       145 ~~Al~a~rym~~yG~t~  161 (388)
T PRK08142        145 LYGMCAMRHMHEYGTTS  161 (388)
T ss_pred             HHHHHHHHHHHHHCCCH
T ss_conf             99999999999979699


No 142
>pfam08735 DUF1786 Putative pyruvate format-lyase activating enzyme (DUF1786). This family is annotated as pyruvate formate-lyase activating enzyme (EC:1.97.1.4) in UniProt. It is not clear where this annotation comes from.
Probab=64.50  E-value=8.9  Score=16.99  Aligned_cols=96  Identities=20%  Similarity=0.318  Sum_probs=55.0

Q ss_pred             EEEEECCEEECHHHHHHHHHHHHHHHHHHHH--CCCCCEEEE--EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             7999579587199999999999999999983--884733698--537788740257886344211222222221024788
Q gi|255764494|r  101 AWIEAQGKQYSPSQISAIVLQKMKETAESFL--GETVSKAVI--TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       101 ~~~~~~~~~~~peei~a~iL~~lk~~ae~~l--~~~v~~~Vi--tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      +.+-++...|.| ..+..+.+.-  ..+..|  |..+.+.+-  ++|.+|+-.  +++.++..-+|    .++-++-+||
T Consensus        81 vavAvQDHG~~p-~~SnR~~RF~--~~~~~L~~g~~~~~~~~~d~~P~~ftRm--~av~~sl~~~~----~~vmDTg~AA  151 (252)
T pfam08735        81 VAVAVQDHGFAP-GMSNRIFRFE--LIREKLDEGGRPEDFLFRDEVPPTFSRM--KAIADSLKGAG----ALVMDTGPAA  151 (252)
T ss_pred             EEEEECCCCCCC-CCCCHHHHHH--HHHHHHHCCCCHHHEEECCCCCHHHHHH--HHHHHHHCCCC----EEEECCHHHH
T ss_conf             899962688898-9741588999--9999986389988806557895142479--99999735488----0777278999


Q ss_pred             HHHHCC---CCCCCEEEEEEECCCEEEEEEEE
Q ss_conf             886034---45655079987244114543101
Q gi|255764494|r  177 LAYGLD---KKDARTVIVFDFGGGTFDVSLLE  205 (652)
Q Consensus       177 l~Y~~~---~~~~~~vlV~D~Gggt~dvsi~~  205 (652)
                      +.=++.   ......++|+|+|-|++-..++.
T Consensus       152 vlGaL~d~~~~~~~~~ivvnvGN~HT~a~lv~  183 (252)
T pfam08735       152 VLGALEDPKVSAKNPILVVNIGNGHTLAALVD  183 (252)
T ss_pred             HHHHCCCHHHHCCCCEEEEEECCCCEEEEEEE
T ss_conf             86320286675659749998078747999996


No 143
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=64.33  E-value=5.7  Score=18.46  Aligned_cols=52  Identities=23%  Similarity=0.305  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf             234200001100111101013563110146630785305--6778865410111
Q gi|255764494|r  303 LVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK  354 (652)
Q Consensus       303 l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~  354 (652)
                      +..|--+.....++++|+++++.+++|+.|..-|-+|..  |.=-+.|.+.|+.
T Consensus       273 ~~~P~~~~~~~~~~~al~~agi~~~~i~yieaHgtgT~~gD~~E~~ai~~~f~~  326 (421)
T cd00833         273 ITAPSGEAQAALIRRAYARAGVDPSDIDYVEAHGTGTPLGDPIEVEALAKVFGG  326 (421)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf             888756689999999999729994412089974476866699999999999612


No 144
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=64.18  E-value=6.3  Score=18.15  Aligned_cols=58  Identities=24%  Similarity=0.295  Sum_probs=42.1

Q ss_pred             CCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCCC-CCCCCCCC
Q ss_conf             200001100111101013563110146630785305--67788654101111-11135653
Q gi|255764494|r  306 HLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNKS-PSKGVNPD  363 (652)
Q Consensus       306 ~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~~-~~~~~npd  363 (652)
                      |--......++++|++|++.++||+.|..-|=+|..  +.=...|.+.||.. +..++.+.
T Consensus       259 p~g~g~~~am~~Al~~a~~~~~di~yv~aHgtgT~~~D~~E~~Ai~~vfg~~~pvss~Ks~  319 (395)
T PRK09185        259 PEGLGARLAMQAALADAGLEAADIGYINLHGTATPLNDAMESRAVAAVFGDTVPCSSTKPL  319 (395)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf             8889999999999997399934366699616768665899999999984888624676411


No 145
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=63.58  E-value=8.9  Score=17.00  Aligned_cols=21  Identities=33%  Similarity=0.593  Sum_probs=18.0

Q ss_pred             EEEEECCCCEEEEEEEECCEE
Q ss_conf             699804866069999989955
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNV   24 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~   24 (652)
                      .+.||.|||++..|++.++.+
T Consensus         2 ~L~iDiGNT~~~~a~~~~~~~   22 (251)
T COG1521           2 LLLIDIGNTRIVFALYEGGKV   22 (251)
T ss_pred             EEEEEECCCEEEEEEECCCEE
T ss_conf             589981797078998039857


No 146
>PRK13334 consensus
Probab=63.54  E-value=8.4  Score=17.18  Aligned_cols=21  Identities=24%  Similarity=0.695  Sum_probs=18.3

Q ss_pred             CEEEEECCCCEEEEEEEECCE
Q ss_conf             169980486606999998995
Q gi|255764494|r    3 KVIGIDLGTTNSCVAIMDGKN   23 (652)
Q Consensus         3 ~viGIDlGtt~s~va~~~~~~   23 (652)
                      .++-||.|||+.+++++++.+
T Consensus         5 ~lL~IDIGNT~i~~glf~~~~   25 (262)
T PRK13334          5 PLLAVDIGNTSTVLGLADGSE   25 (262)
T ss_pred             EEEEEEECCCCEEEEEEECCE
T ss_conf             089999778805999997891


No 147
>TIGR00459 aspS_bact aspartyl-tRNA synthetase; InterPro: IPR004524   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Aspartyl tRNA synthetase 6.1.1.12 from EC is an alpha2 dimer that belongs to class IIb. Structural analysis combined with mutagenesis and enzymology data on the yeast enzyme point to a tRNA binding process that starts by a recognition event between the tRNA anticodon loop and the synthetase anticodon binding module .     This family represents aspartyl-tRNA synthetases from the bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). ; GO: 0000166 nucleotide binding, 0004815 aspartate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006422 aspartyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=63.09  E-value=4.8  Score=19.03  Aligned_cols=48  Identities=27%  Similarity=0.450  Sum_probs=36.2

Q ss_pred             EEEEEECCCCCCH--HHHHHHHHH-CCCCCCCCCC----CCCCHHHHHHHHCCCC
Q ss_conf             0146630785305--677886541-0111111135----6531011111000223
Q gi|255764494|r  329 IDEVVLVGGMTRM--PKIQQSVQD-FFNKSPSKGV----NPDEVVAMGAAIQAGV  376 (652)
Q Consensus       329 I~~V~lvGGssri--P~v~~~i~~-~fg~~~~~~~----npdeaVa~GAA~~a~~  376 (652)
                      |++++|=|||.||  |.||+.|-+ .+|..+...-    --.||--+||=-||++
T Consensus       540 lNG~ElGGGSiRIh~~~~Q~~~F~d~Lgid~eea~EkFGFLLeA~~yGaPPHgG~  594 (653)
T TIGR00459       540 LNGVELGGGSIRIHDPEVQEKVFEDILGIDPEEAREKFGFLLEAFKYGAPPHGGL  594 (653)
T ss_pred             EEEEEECCCEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             8306988710464287899999987628898998776356875873576851015


No 148
>TIGR00329 gcp metalloendopeptidase, putative, glycoprotease family; InterPro: IPR000905   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase from Pasteurella haemolytica (Mannheimia haemolytica).   O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues . Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 , . Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion , .   Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis . The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region .; GO: 0008450 O-sialoglycoprotein endopeptidase activity, 0006508 proteolysis.
Probab=62.99  E-value=3.4  Score=20.16  Aligned_cols=48  Identities=21%  Similarity=0.403  Sum_probs=36.2

Q ss_pred             CHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf             000011001111010135631101466307853056778865410111
Q gi|255764494|r  307 LIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK  354 (652)
Q Consensus       307 l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~  354 (652)
                      .++..++.++++|++..-+..++..++++||-|---.+|+.|+.....
T Consensus       265 ~~~~Li~~~kral~~qPekf~~~~~~~~~GGVsaN~~LR~~l~~~~~~  312 (337)
T TIGR00329       265 AFDHLIEKTKRALKDQPEKFTGPKELVLVGGVSANKRLREKLETLCQE  312 (337)
T ss_pred             HHHHHHHHHHHHHHHCHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             999889999999851505431776699943188888999999999974


No 149
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=62.94  E-value=6.5  Score=18.04  Aligned_cols=53  Identities=25%  Similarity=0.304  Sum_probs=33.7

Q ss_pred             ECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf             311000012342000011001111010135631101466307853056778865410111
Q gi|255764494|r  295 LTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK  354 (652)
Q Consensus       295 itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~  354 (652)
                      -.|+.|...+    ......++++|+.++++++|||.+++-=-..||   .+.+.+.+|.
T Consensus       213 ~Gr~vfk~av----~~~~~~~~~~L~~~~l~~~dId~~vpHQan~ri---~~~i~~~l~~  265 (323)
T COG0332         213 DGREVFKFAV----RAMPKAIEEVLEKAGLTPEDIDWFVPHQANLRI---IEAIAKKLGI  265 (323)
T ss_pred             CCHHHHHHHH----HHHHHHHHHHHHHCCCCHHHCCEECCCCCCHHH---HHHHHHHCCC
T ss_conf             4588999999----999999999999849998899887206454999---9999998299


No 150
>PRK04457 spermidine synthase; Provisional
Probab=62.56  E-value=4.3  Score=19.40  Aligned_cols=151  Identities=15%  Similarity=0.172  Sum_probs=68.4

Q ss_pred             CCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             22210247888860344565507998724411454310102314654201332245521344766553678764201343
Q gi|255764494|r  167 RIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGID  246 (652)
Q Consensus       167 ~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d  246 (652)
                      .|+.+-|-+.+++-+....+++|+++-+|||++--.+.+.-+.          ..+-.-.||...++...+.|.--    
T Consensus        48 ~L~l~Ytr~Mm~~LLf~p~Pk~vl~iGLGgGsl~k~~~~~~P~----------~~i~~VEIdp~Vi~vAr~~F~lP----  113 (262)
T PRK04457         48 ELVLSYSRAMMGFLLFNPRPQHILQIGLGGGSFAKFIDTYLPD----------TRQTAVEINPQVIAVARNHFELP----  113 (262)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCC----------CEEEEEECCHHHHHHHHHHCCCC----
T ss_conf             0212889999999865899786999925701999999983986----------75899987889999999865799----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCC
Q ss_conf             02447899999999998854115565035863044346788721268731100001234200001100111101013563
Q gi|255764494|r  247 LKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSP  326 (652)
Q Consensus       247 ~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~  326 (652)
                       .+++|--.-.-++++=++.   ...++++    +.-|..++.-....+...+|-+.|.           .+|.     +
T Consensus       114 -~dd~Rl~V~~~Dg~~fv~~---~~~~~Dv----I~vD~fd~~g~~~~L~t~~Fy~~c~-----------~~L~-----~  169 (262)
T PRK04457        114 -FEDEKFEIIEADGAEYIKV---FPASTDV----ILVDGFDGEQIVDALVTQPFFRDCR-----------NALS-----S  169 (262)
T ss_pred             -CCCCCEEEEECCHHHHHHH---CCCCCCE----EEEECCCCCCCCCCCCCHHHHHHHH-----------HHCC-----C
T ss_conf             -9997269995538999854---8677788----9996889888860008299999999-----------8649-----8


Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf             11014663078530567788654101111
Q gi|255764494|r  327 SDIDEVVLVGGMTRMPKIQQSVQDFFNKS  355 (652)
Q Consensus       327 ~~I~~V~lvGGssriP~v~~~i~~~fg~~  355 (652)
                      ..|=.+=|-|+..+.+..-+.+...|+..
T Consensus       170 ~Gvlv~Nl~~~~~~~~~~l~~i~~~F~~~  198 (262)
T PRK04457        170 DGVFVTNLWSGDKRYQRYIERLLSVFEGR  198 (262)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHCCE
T ss_conf             93999986889986599999999972873


No 151
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Probab=62.12  E-value=6.9  Score=17.83  Aligned_cols=50  Identities=12%  Similarity=0.185  Sum_probs=39.3

Q ss_pred             CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf             4200001100111101013563110146630785305--6778865410111
Q gi|255764494|r  305 NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK  354 (652)
Q Consensus       305 ~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~  354 (652)
                      .|--......++++|++|+++++||+.|..-|-+|..  |.=-+.|.+.||.
T Consensus       335 ~p~g~g~~~am~~AL~~Agl~~~dIdyInaHGTgT~~gD~~E~~Ai~~vfg~  386 (477)
T PTZ00050        335 EPNGKGLCNSIHKAIKNANININDVKYINAHGTSTNLNDKIETKVFKNVFKD  386 (477)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf             9799999999999999717897450089961776887899999999998657


No 152
>PRK00976 hypothetical protein; Provisional
Probab=61.96  E-value=3.6  Score=19.98  Aligned_cols=56  Identities=21%  Similarity=0.298  Sum_probs=40.0

Q ss_pred             EEEEEECC--CCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHE
Q ss_conf             01466307--85305677886541011111113565310111110002234675221000
Q gi|255764494|r  329 IDEVVLVG--GMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLLL  386 (652)
Q Consensus       329 I~~V~lvG--GssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~~  386 (652)
                      .+.|+|.|  |+.+-|-|.+.|.++++.++. .+ +-++.|.|+|..|.-.....++++=
T Consensus       262 ~~~V~LaGS~g~~~~~~v~~~i~~~l~~~~~-vl-~~~saAiG~A~IArDI~~Gkk~ILG  319 (324)
T PRK00976        262 DANVVLAGSVGEMDEPNVAERIKELLDGNVL-VL-GKWSAAIGLALIARDIFNGKKEILG  319 (324)
T ss_pred             CCCEEEECCCCCCCCCCHHHHHHHHHCCCCE-EE-CHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf             8887984133345674488999998668838-73-5566665689999998759641600


No 153
>PRK12566 glycine dehydrogenase; Provisional
Probab=61.92  E-value=9.9  Score=16.67  Aligned_cols=61  Identities=30%  Similarity=0.482  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHH------HHCC---------CCCEEEEEECCCCC---CCHH---H----HHHH----HHHHCCCCC--C
Q ss_conf             999999999999------8388---------47336985377887---4025---7----8863----442112222--2
Q gi|255764494|r  118 IVLQKMKETAES------FLGE---------TVSKAVITVPAYFN---DAQR---Q----ATKD----AGRIAGLDV--L  166 (652)
Q Consensus       118 ~iL~~lk~~ae~------~l~~---------~v~~~VitVP~~f~---~~qR---~----a~~~----Aa~~AGl~v--~  166 (652)
                      .+|.+|+++|.+      ++|.         -|.+-|+.-|.|||   +.|-   |    |+.+    -+.+.|+++  .
T Consensus        65 e~l~~l~~ia~kN~~~~sfIG~Gyy~t~tP~vI~Rnvlenp~wyTaYTPYQpEISQGrLeaL~nfQTmi~dLTGm~vaNA  144 (954)
T PRK12566         65 AALARLRGYAEQNQVWTSLIGMGYHGTVTPTVILRNVLENPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLANA  144 (954)
T ss_pred             HHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99999999997378642230177678847567777530488750477998646766999999999999999878760057


Q ss_pred             CCCCCHHHHHHH
Q ss_conf             222102478888
Q gi|255764494|r  167 RIINEPTAAALA  178 (652)
Q Consensus       167 ~li~EptAAal~  178 (652)
                      .|++|.||||=+
T Consensus       145 SllDeaTAaAEA  156 (954)
T PRK12566        145 SLLDEATAAAEA  156 (954)
T ss_pred             CCHHHHHHHHHH
T ss_conf             600089999999


No 154
>PRK13327 pantothenate kinase; Reviewed
Probab=61.85  E-value=6.5  Score=18.06  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=19.3

Q ss_pred             CCCEEEEECCCCEEEEEEEECCEE
Q ss_conf             981699804866069999989955
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDGKNV   24 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~~~~   24 (652)
                      |+..+ ||.|||+.+.+++.++..
T Consensus         1 M~~ll-iDiGNTriKwa~~~~~~~   23 (242)
T PRK13327          1 MSEWL-FDLGNSRFKYAPLHGNRA   23 (242)
T ss_pred             CCCEE-EEECCCHHEEEEECCCCC
T ss_conf             97278-996676324899708964


No 155
>pfam02075 RuvC Crossover junction endodeoxyribonuclease RuvC.
Probab=61.14  E-value=6.5  Score=18.07  Aligned_cols=18  Identities=22%  Similarity=0.564  Sum_probs=15.6

Q ss_pred             EEEEECCCCEEEEEEEEC
Q ss_conf             699804866069999989
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDG   21 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~   21 (652)
                      |+|||=|+.++-.|+.+.
T Consensus         1 ILGIDPGl~~tG~avi~~   18 (148)
T pfam02075         1 ILGIDPGSRVTGYGVIEH   18 (148)
T ss_pred             CEEECCCCCCEEEEEEEE
T ss_conf             988788868607999997


No 156
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=60.87  E-value=7.2  Score=17.69  Aligned_cols=21  Identities=24%  Similarity=0.537  Sum_probs=17.1

Q ss_pred             CCCEEEEECCCCEEEEEEEEC
Q ss_conf             981699804866069999989
Q gi|255764494|r    1 MSKVIGIDLGTTNSCVAIMDG   21 (652)
Q Consensus         1 Ms~viGIDlGtt~s~va~~~~   21 (652)
                      |=.|+|||=|++++-.|+.+.
T Consensus         1 mMrILGIDPGl~~tG~gvie~   21 (169)
T PRK00039          1 MMRILGIDPGLRRTGYGVIEV   21 (169)
T ss_pred             CCEEEEECCCCCCEEEEEEEE
T ss_conf             958999883668608999997


No 157
>PRK06158 thiolase; Provisional
Probab=60.85  E-value=4  Score=19.68  Aligned_cols=51  Identities=12%  Similarity=-0.007  Sum_probs=22.1

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             719999999999999999998388473369853778874025788634421122222
Q gi|255764494|r  110 YSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVL  166 (652)
Q Consensus       110 ~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~  166 (652)
                      .++.++...-...-...|- .-...|+.+++.-+..+...+.     -++..|+...
T Consensus        26 ~s~~eL~~eA~~~Al~DAG-i~~~dID~~~~g~~~~~~~g~~-----~a~~lGl~~~   76 (384)
T PRK06158         26 LSAMELLAQAAVRALADAG-LTMADVDGLFTASPDSALWGLS-----VAEYLGIRPR   76 (384)
T ss_pred             CCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCCHHHH-----HHHHCCCCCC
T ss_conf             7999999999999999759-9999909899971576653999-----9998299981


No 158
>PRK13324 pantothenate kinase; Reviewed
Probab=60.47  E-value=10  Score=16.49  Aligned_cols=21  Identities=19%  Similarity=0.659  Sum_probs=18.2

Q ss_pred             EEEEECCCCEEEEEEEECCEE
Q ss_conf             699804866069999989955
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNV   24 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~   24 (652)
                      ++-||.|+|+.+++++++++.
T Consensus         2 ~L~IDIGNT~ik~g~~~~~~~   22 (258)
T PRK13324          2 LLVMDMGNSHIHIGVFDGDRI   22 (258)
T ss_pred             EEEEEECCCCEEEEEEECCEE
T ss_conf             899998733359999999999


No 159
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=59.67  E-value=3.8  Score=19.82  Aligned_cols=72  Identities=17%  Similarity=0.265  Sum_probs=48.1

Q ss_pred             EEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             68731100001234200001100111101013563110146630785305677886541011111113565310111110
Q gi|255764494|r  292 NMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAA  371 (652)
Q Consensus       292 ~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA  371 (652)
                      .+-|-...|++-   +.++..+-..+.|.+.|...++|+ |+-|=|+--+|..-+.+.+        +-+.|-.||+||-
T Consensus        12 riaIV~s~~n~~---It~~Ll~ga~~~L~~~gv~~~~i~-v~~VPGAfEiP~aa~~l~~--------~~~~daiIalG~V   79 (158)
T PRK12419         12 RIAFVQARWHAD---IVDQAREGFVAEIAARGGAASQVD-VFEVPGAFEIPLHAKTLAK--------TGRYAAIVAAALV   79 (158)
T ss_pred             EEEEEECCCCHH---HHHHHHHHHHHHHHHCCCCHHHEE-EEECCCHHHHHHHHHHHHH--------CCCCCEEEEEEEE
T ss_conf             699997677589---999999999999998599855458-9982867899999999985--------5999889988789


Q ss_pred             HCCC
Q ss_conf             0022
Q gi|255764494|r  372 IQAG  375 (652)
Q Consensus       372 ~~a~  375 (652)
                      +.+.
T Consensus        80 IrGe   83 (158)
T PRK12419         80 VDGG   83 (158)
T ss_pred             ECCC
T ss_conf             8289


No 160
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=59.42  E-value=8.9  Score=17.00  Aligned_cols=46  Identities=22%  Similarity=0.281  Sum_probs=36.2

Q ss_pred             HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf             001100111101013563110146630785305--6778865410111
Q gi|255764494|r  309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK  354 (652)
Q Consensus       309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~  354 (652)
                      ......++.+|+++++++++|+.|..-|=+|..  |.=-+.|++.||.
T Consensus       270 ~~~~~a~~~Al~~agi~p~~I~yI~aHgTGT~~gD~~E~~Ai~~~fg~  317 (399)
T cd00832         270 PGLARAIRLALADAGLTPEDVDVVFADAAGVPELDRAEAAALAAVFGP  317 (399)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf             999999999999719996705699983375855699999999999669


No 161
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative; InterPro: IPR008275   This domain is found in a set of closely related proteins including the (R)-2-hydroxyglutaryl-CoA dehydratase activase of Acidaminococcus fermentans, in longer proteins from Methanococcus jannaschii and Methanobacterium thermoautotrophicum that share an additonal N-terminal domain, in a protein described as a subunit of the benzoyl-CoA reductase of Rhodopseudomonas palustris, and in two repeats of an uncharacterised protein of Aquifex aeolicus. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. .
Probab=59.24  E-value=6.2  Score=18.17  Aligned_cols=43  Identities=23%  Similarity=0.362  Sum_probs=37.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHH
Q ss_conf             146630785305677886541011-1111135653101111100
Q gi|255764494|r  330 DEVVLVGGMTRMPKIQQSVQDFFN-KSPSKGVNPDEVVAMGAAI  372 (652)
Q Consensus       330 ~~V~lvGGssriP~v~~~i~~~fg-~~~~~~~npdeaVa~GAA~  372 (652)
                      ..++++||.+....+.+.+++.++ .++...-.|.-+-+.||++
T Consensus       215 ~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~g~~~  258 (259)
T TIGR00241       215 PPIVLTGGVSKNKGLVKALEKELGGLKVLTPPEPQLVGAVGAAL  258 (259)
T ss_pred             CCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
T ss_conf             55022052467789999999874673111575213443222222


No 162
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=59.05  E-value=4.7  Score=19.09  Aligned_cols=45  Identities=24%  Similarity=0.330  Sum_probs=29.3

Q ss_pred             HHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf             000110011110101356311014663078530567788654101111
Q gi|255764494|r  308 IQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKS  355 (652)
Q Consensus       308 ~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~  355 (652)
                      +..+...++++|++++++++|||.+++-=++.++   .+.+.+.+|.+
T Consensus       225 ~~~~~~~i~~~L~~~gl~~~did~~i~Hq~~~~~---~~~i~~~Lgl~  269 (326)
T PRK12879        225 VRGMPKAAKQVLEKAGLTKDDIDWVIPHQANLRI---IESLCEKLGIP  269 (326)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHH---HHHHHHHCCCC
T ss_conf             8756999999999859997788989986887899---99999980979


No 163
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=59.03  E-value=4.8  Score=19.05  Aligned_cols=44  Identities=23%  Similarity=0.344  Sum_probs=29.1

Q ss_pred             HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf             00110011110101356311014663078530567788654101111
Q gi|255764494|r  309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKS  355 (652)
Q Consensus       309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~  355 (652)
                      ..+...++++|++++++++|||.+++-=++.|+   -+.+.+.+|.+
T Consensus       220 ~~~~~~i~~~L~~~gl~~~dId~~i~Hq~~~~~---~~~~~~~lgi~  263 (319)
T PRK09352        220 REMAKVAREALEAAGLTPEDIDWLVPHQANLRI---IDATAKKLGLP  263 (319)
T ss_pred             HHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHH---HHHHHHHCCCC
T ss_conf             854999999998749983238789982676899---99999981979


No 164
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701    Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=58.68  E-value=5.7  Score=18.44  Aligned_cols=65  Identities=28%  Similarity=0.362  Sum_probs=33.6

Q ss_pred             ECHHHHHHHHHHHH-------HHHHHHHHCC-CC--CEEEEEECCCCCCCHHHHHHHH-HHHCCCCCCCCCCCHHHHH
Q ss_conf             71999999999999-------9999998388-47--3369853778874025788634-4211222222221024788
Q gi|255764494|r  110 YSPSQISAIVLQKM-------KETAESFLGE-TV--SKAVITVPAYFNDAQRQATKDA-GRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       110 ~~peei~a~iL~~l-------k~~ae~~l~~-~v--~~~VitVP~~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAa  176 (652)
                      .+.-||++.=|...       ...|+.-|.. +|  .=+. ==|+-|+--++|.+==| |-++-..+| |++||||+-
T Consensus       105 vsalevV~ePL~~~G~~~~~A~~~A~~LL~rLniPERLW~-LpPaTFSGGEqQRVNIARg~i~d~PiL-LLdEPTASL  180 (224)
T TIGR02324       105 VSALEVVAEPLLERGVPREAARARARELLARLNIPERLWS-LPPATFSGGEQQRVNIARGFIADYPIL-LLDEPTASL  180 (224)
T ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCC-CCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCC
T ss_conf             6728888787987289589999999999975574024428-878865660589999987652577400-113554024


No 165
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=57.86  E-value=7.8  Score=17.43  Aligned_cols=18  Identities=22%  Similarity=0.436  Sum_probs=10.9

Q ss_pred             CCCEEEEEEECCCEEEEE
Q ss_conf             655079987244114543
Q gi|255764494|r  185 DARTVIVFDFGGGTFDVS  202 (652)
Q Consensus       185 ~~~~vlV~D~Gggt~dvs  202 (652)
                      .+++|||+-+|-.-|..|
T Consensus       400 tg~~VLVvGlGPAG~tLs  417 (1048)
T PRK06567        400 TNYNILVTGLGPAGFSLS  417 (1048)
T ss_pred             CCCEEEEEECCCCCHHHH
T ss_conf             996489992486520188


No 166
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=57.78  E-value=2.5  Score=21.13  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=15.2

Q ss_pred             HCCCCCCHHCCCCCEEEEEEEECCCCCC
Q ss_conf             0011110101356311014663078530
Q gi|255764494|r  313 EPCKKCLQDAGLSPSDIDEVVLVGGMTR  340 (652)
Q Consensus       313 ~~i~~~L~~a~~~~~~I~~V~lvGGssr  340 (652)
                      ..|++.|++.++.+.   .|+.||-.+|
T Consensus       199 ~~i~~llk~~~l~p~---~viYVGDEtR  223 (273)
T PRK13225        199 RALSQLVAREGWQPA---AVMYVGDETR  223 (273)
T ss_pred             HHHHHHHHHHCCCCC---CEEEECCCCC
T ss_conf             569999998289964---4689666412


No 167
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=57.69  E-value=12  Score=16.16  Aligned_cols=11  Identities=18%  Similarity=0.410  Sum_probs=4.3

Q ss_pred             HHHHHHCCCCC
Q ss_conf             88654101111
Q gi|255764494|r  345 QQSVQDFFNKS  355 (652)
Q Consensus       345 ~~~i~~~fg~~  355 (652)
                      .++...+||.+
T Consensus       279 ~~l~~~L~g~~  289 (554)
T TIGR03545       279 KNFAVDLFGEE  289 (554)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999998699


No 168
>pfam00814 Peptidase_M22 Glycoprotease family. The Peptidase M22 proteins are part of the HSP70-actin superfamily. The region represented here is an insert into the fold and is not found in the rest of the family (beyond the Peptidase M22 family). Included in this family are the Rhizobial NodU proteins and the HypF regulator. This region also contains the histidine dyad believed to coordinate the metal ion and hence provide catalytic activity. Interestingly the histidines are not well conserved, and there is a lack of experimental evidence to support peptidase activity as a general property of this family. There also appear to be instances of this domain outside of the HSP70-actin superfamily.
Probab=57.36  E-value=6.3  Score=18.12  Aligned_cols=24  Identities=17%  Similarity=0.538  Sum_probs=18.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf             014663078530567788654101
Q gi|255764494|r  329 IDEVVLVGGMTRMPKIQQSVQDFF  352 (652)
Q Consensus       329 I~~V~lvGGssriP~v~~~i~~~f  352 (652)
                      +..+++.||-+.--.+|+.+.+..
T Consensus       182 ~k~lvv~GGVaaN~~Lr~~~~~~~  205 (225)
T pfam00814       182 AKELVILGGVAANKRLREALTEMA  205 (225)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHHC
T ss_conf             498999894999999999999725


No 169
>PRK13323 consensus
Probab=57.16  E-value=12  Score=16.09  Aligned_cols=21  Identities=38%  Similarity=0.814  Sum_probs=18.3

Q ss_pred             EEEEECCCCEEEEEEEECCEE
Q ss_conf             699804866069999989955
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNV   24 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~   24 (652)
                      ++-||.|+|+.++++++++..
T Consensus         2 ~L~iDIGNT~ik~gl~~~~~~   22 (258)
T PRK13323          2 LLAIDVGNTHTVVGLFDGAKV   22 (258)
T ss_pred             EEEEEECCCCEEEEEEECCEE
T ss_conf             899998863039999989999


No 170
>PRK09604 putative DNA-binding/iron metalloprotein/AP endonuclease; Reviewed
Probab=56.92  E-value=12  Score=16.07  Aligned_cols=138  Identities=15%  Similarity=0.322  Sum_probs=63.6

Q ss_pred             EEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             07998724411454310102314654201332245521344766553678764201343024478999999999988541
Q gi|255764494|r  188 TVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIE  267 (652)
Q Consensus       188 ~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~  267 (652)
                      -++..=+-||++.+-.++ ..+.+++++..-|... |+-||+.=. .+        +.....- ..+.+|-...      
T Consensus       128 Pfl~LlvSGGhT~l~~~~-~~~~~~ilG~T~Dda~-GeafDKvar-~L--------GL~yPgG-p~ie~lA~~g------  189 (335)
T PRK09604        128 PFLALLVSGGHTQLVAVK-GVGDYEILGETLDDAA-GEAFDKVAR-LL--------GLGYPGG-PKIDKLAEKG------  189 (335)
T ss_pred             CEEEEEECCCCEEEEEEC-CCCCEEEEEEECCCCH-HHHHHHHHH-HC--------CCCCCCC-HHHHHHHHHC------
T ss_conf             858999806846999984-7974799877615511-778999998-72--------9999986-6999999828------


Q ss_pred             CCCCCEEEEEECCCCCCCCCCCEEEEE---------EC-----CCCCCCCCCCCHHHH----HHCCCCCCHHCCCCCEEE
Q ss_conf             155650358630443467887212687---------31-----100001234200001----100111101013563110
Q gi|255764494|r  268 LSSTSQTEINLPFISANSAGAQHLNMK---------LT-----RAQFERLVNHLIQKT----VEPCKKCLQDAGLSPSDI  329 (652)
Q Consensus       268 LS~~~~~~i~i~~~~~~~~~g~d~~~~---------it-----R~~fe~l~~~l~~~~----~~~i~~~L~~a~~~~~~I  329 (652)
                         +. ..+.+|.-... .++.||+++         +.     ......+|..+-+-+    .+.++++++..     .+
T Consensus       190 ---~~-~~~~~P~~~~~-~~~~dfSFSGlkTav~~~i~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~A~~~~-----~~  259 (335)
T PRK09604        190 ---DP-EAFDFPRPMKG-RPGLDFSFSGLKTAVLNLIEKNKQKEQTKADIAASFQEAVVDVLVEKTKRALKKT-----GV  259 (335)
T ss_pred             ---CC-CCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CC
T ss_conf             ---92-31277842038-9987561410999999999854445566999999999999999999999999997-----99


Q ss_pred             EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf             146630785305677886541011
Q gi|255764494|r  330 DEVVLVGGMTRMPKIQQSVQDFFN  353 (652)
Q Consensus       330 ~~V~lvGGssriP~v~~~i~~~fg  353 (652)
                      ..++++||-+.-..+|+.++++..
T Consensus       260 k~lvv~GGVaaN~~LR~~l~~~~~  283 (335)
T PRK09604        260 KTLVVAGGVAANSYLREKLAELCK  283 (335)
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             879994647777999999999999


No 171
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=56.89  E-value=5.3  Score=18.70  Aligned_cols=55  Identities=24%  Similarity=0.335  Sum_probs=38.9

Q ss_pred             EEEEEECC--CCCCHH-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             01466307--853056-7788654101111111356531011111000223467522100
Q gi|255764494|r  329 IDEVVLVG--GMTRMP-KIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLL  385 (652)
Q Consensus       329 I~~V~lvG--GssriP-~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~  385 (652)
                      ...|.|+|  ||.+-| .|.+.|.++++.++ ..+ .-++.|.|+|..|.-.....++++
T Consensus       263 ~~~v~lags~Gs~~~p~~~~~~i~~~l~~~~-~vl-~~~saAiG~A~IArDI~~Gkk~IL  320 (326)
T TIGR03281       263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKV-LVL-DSESAAIGLALIAEDIFSGKREIL  320 (326)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHCCCC-EEE-CHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             8877986113234781668999999857980-873-666776568999999876974270


No 172
>PRK13332 consensus
Probab=56.86  E-value=12  Score=16.06  Aligned_cols=21  Identities=24%  Similarity=0.474  Sum_probs=18.4

Q ss_pred             EEEEECCCCEEEEEEEECCEE
Q ss_conf             699804866069999989955
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNV   24 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~   24 (652)
                      .+-||.|||+.+++++++++.
T Consensus         2 ~L~IDIGNT~ik~~l~~~~~~   22 (251)
T PRK13332          2 LLLFDVGNTHTVVGITEDGKT   22 (251)
T ss_pred             EEEEEECCCCEEEEEEECCEE
T ss_conf             899998887069999989999


No 173
>pfam01150 GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family.
Probab=56.78  E-value=8.2  Score=17.28  Aligned_cols=18  Identities=33%  Similarity=0.597  Sum_probs=15.7

Q ss_pred             CCEEEEEEECCCEEEEEE
Q ss_conf             550799872441145431
Q gi|255764494|r  186 ARTVIVFDFGGGTFDVSL  203 (652)
Q Consensus       186 ~~~vlV~D~Gggt~dvsi  203 (652)
                      ..++-|+||||+++.++-
T Consensus       159 ~~T~gvlDlGGaStQIaf  176 (424)
T pfam01150       159 QSTVGVIDLGGASTQIAF  176 (424)
T ss_pred             CCCEEEEECCCCEEEEEE
T ss_conf             772699951785367887


No 174
>PRK13330 consensus
Probab=56.50  E-value=12  Score=16.02  Aligned_cols=21  Identities=24%  Similarity=0.526  Sum_probs=18.0

Q ss_pred             EEEEECCCCEEEEEEEECCEE
Q ss_conf             699804866069999989955
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNV   24 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~   24 (652)
                      .+-||.|+||.++++++++..
T Consensus         2 ~L~iDIGNT~i~~glf~~~~~   22 (257)
T PRK13330          2 LLVVDVGNTNTVFGIFENGKK   22 (257)
T ss_pred             EEEEEECCCCEEEEEEECCEE
T ss_conf             799997788069999989979


No 175
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=55.98  E-value=5.2  Score=18.76  Aligned_cols=51  Identities=18%  Similarity=0.262  Sum_probs=34.9

Q ss_pred             CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             420000110011110101356311014663078530567788654101111111
Q gi|255764494|r  305 NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSK  358 (652)
Q Consensus       305 ~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~  358 (652)
                      +..+......++++|++++++++|||.+++-=++-++   .+.+.+.+|.++.+
T Consensus       224 ~~~~~~~~~~~~~~L~~~gl~~~dId~~v~HQ~n~~~---~~~v~~~lgl~~ek  274 (327)
T PRK05963        224 TEAVRMMTGASQNVLASAAMLPQDIDRFFPHQANARI---VDKVCETLGIPRAK  274 (327)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHH---HHHHHHHCCCCHHH
T ss_conf             9999852999999999849982228889986799899---99999982979787


No 176
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=55.88  E-value=12  Score=15.95  Aligned_cols=52  Identities=13%  Similarity=0.259  Sum_probs=30.9

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CC--CCCCCHHHHHHHHHHHCCCC
Q ss_conf             58719999999999999999998388473369853--77--88740257886344211222
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PA--YFNDAQRQATKDAGRIAGLD  164 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~--~f~~~qR~a~~~Aa~~AGl~  164 (652)
                      +.++|+++.+..++.+.+.+.- -...|+++++..  |+  .+....|++.+    .|||.
T Consensus        28 ~~~~~~~L~a~~~~~~l~r~gi-~~~~Id~vi~G~~~~~g~~~~~~aR~~~l----~aGlp   83 (394)
T PRK06445         28 NDLRPEELAAVLINALIEKTGI-KPEEIGDVITGCALQVGENWLYGGRHVVL----LAKLP   83 (394)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCC-CHHHCCEEEEECCCCCCCCCCCHHHHHHH----HCCCC
T ss_conf             7899999999999999987498-98996979996475556566748899999----76999


No 177
>pfam09726 Macoilin Transmembrane protein. This entry is a highly conserved protein present in eukaryotes.
Probab=55.51  E-value=12  Score=15.90  Aligned_cols=12  Identities=17%  Similarity=0.313  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q gi|255764494|r  529 ETKNHAESLIYS  540 (652)
Q Consensus       529 eakN~lEs~iy~  540 (652)
                      ++|..+|.-+-+
T Consensus       490 ~~r~~~E~qL~~  501 (680)
T pfam09726       490 DSRVNAEKQLAE  501 (680)
T ss_pred             HHHHHHHHHHHH
T ss_conf             989889999999


No 178
>TIGR01314 gntK_FGGY gluconate kinase; InterPro: IPR006002    Gluconate kinase (2.7.1.12 from EC) is an alpha/beta structure consisting of a twisted parallel beta-sheet surrounded by alpha-helices with overall topology similar to nucleoside monophosphate (NMP) kinases, such as adenylate kinase. Significant conformational changes are induced upon binding of ATP to the enzyme. The largest changes involve a hinge-bending motion of the NMP(bind) part and a motion of the LID with adjacent helices, which opens the cavity to the second substrate, gluconate. The opening of the active site cleft upon ATP binding is the opposite of what has been observed in the NMP kinase family so far, which usually close their active site to prevent fortuitous hydrolysis of ATP. The beta and gamma-phosphate groups of ATP bind in the predicted P-loop. A conserved lysine side-chain interacts with the gamma-phosphate group, and might promote phosphoryl transfer.  ATP + D-gluconate = ADP + 6-phospho-D-gluconate.  Gluconate-6-phosphate binds with its phosphate group in a similar position as the gamma-phosphate of ATP, consistent with inline phosphoryl transfer. . ; GO: 0019200 carbohydrate kinase activity, 0019521 D-gluconate metabolic process.
Probab=54.93  E-value=11  Score=16.24  Aligned_cols=56  Identities=20%  Similarity=0.302  Sum_probs=44.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             014663078530567788654101111111356531011111000223467522100
Q gi|255764494|r  329 IDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLL  385 (652)
Q Consensus       329 I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~~~~  385 (652)
                      +..|--+||.++.-.=++++.+.|..++... ..-|+-|+||++.|-.--|.+.++.
T Consensus       403 ~~~I~ATGGFa~SEvW~Q~~sDIFe~~~~VP-ES~EssCLgA~ilg~~A~G~Ied~~  458 (506)
T TIGR01314       403 LKMIQATGGFAKSEVWRQMLSDIFEQEIVVP-ESYESSCLGACILGLKALGKIEDFS  458 (506)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCHH
T ss_conf             1024415884147899999987624864366-7631478999999886427712257


No 179
>pfam03309 Bvg_acc_factor Bordetella pertussis Bvg accessory factor family.
Probab=54.27  E-value=13  Score=15.76  Aligned_cols=21  Identities=33%  Similarity=0.591  Sum_probs=17.8

Q ss_pred             EEEEECCCCEEEEEEEECCEE
Q ss_conf             699804866069999989955
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNV   24 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~   24 (652)
                      ++-||.|||+.++++++++..
T Consensus         1 ~L~IDiGNT~iK~~l~~~~~~   21 (206)
T pfam03309         1 LLLIDIGNTNIKWGLFDGDKL   21 (206)
T ss_pred             CEEEEECCCEEEEEEEECCEE
T ss_conf             989997655069999989999


No 180
>pfam02347 GDC-P Glycine cleavage system P-protein. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is:- Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2
Probab=54.23  E-value=13  Score=15.76  Aligned_cols=73  Identities=27%  Similarity=0.486  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHH------HHCC---------CCCEEEEEECCCCC---CCH---HHHHHHH--------HHHCCCCCC--C
Q ss_conf             99999999999------8388---------47336985377887---402---5788634--------421122222--2
Q gi|255764494|r  119 VLQKMKETAES------FLGE---------TVSKAVITVPAYFN---DAQ---RQATKDA--------GRIAGLDVL--R  167 (652)
Q Consensus       119 iL~~lk~~ae~------~l~~---------~v~~~VitVP~~f~---~~q---R~a~~~A--------a~~AGl~v~--~  167 (652)
                      ++++++.++.+      ++|.         -|.+.++.-|.|+|   +.|   -|-+++|        |++-|+++.  .
T Consensus        52 ~~~~l~~la~kN~~~~sfiG~G~y~h~vP~vi~~~i~~r~efyTaYTPYQpEiSQG~LqalfefQtmi~eLTGmdvaNAS  131 (429)
T pfam02347        52 MLAELEAIASKNKIYKSFIGMGYYDTIIPAVILRNILENPEWYTQYTPYQPEISQGRLEALLNFQTMVCDLTGLDVANAS  131 (429)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999999975897663157877797658156465404766430369998154437999999999999998588756876


Q ss_pred             CCCCHHHHHH----HHHCCCCCCCEEEE
Q ss_conf             2210247888----86034456550799
Q gi|255764494|r  168 IINEPTAAAL----AYGLDKKDARTVIV  191 (652)
Q Consensus       168 li~EptAAal----~Y~~~~~~~~~vlV  191 (652)
                      +.++.||+|=    +|.+.++....|+|
T Consensus       132 lyD~aTA~aEA~~ma~r~~k~~~~~vlv  159 (429)
T pfam02347       132 LLDEGTAAAEAMALAARISKGKKKKFVV  159 (429)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             6667889999999987651578877998


No 181
>PRK06840 hypothetical protein; Validated
Probab=53.98  E-value=6.1  Score=18.23  Aligned_cols=51  Identities=16%  Similarity=0.232  Sum_probs=34.3

Q ss_pred             HHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             000110011110101356311014663078530567788654101111111356
Q gi|255764494|r  308 IQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVN  361 (652)
Q Consensus       308 ~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~n  361 (652)
                      +.+....++++|+++|++++|||.+++.=.+.++  ++. +.+.+|.+..+.++
T Consensus       236 ~~~~~~~i~~~L~~~gl~~~DId~~~~hq~~~~~--~~~-~~~~lgi~~~k~~~  286 (337)
T PRK06840        236 IPNFYKVIREALRKSGYTPKDIDYLAILHMKRSA--HIA-VLEGLGLTEEQTIY  286 (337)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHH--HHH-HHHHHCCCHHHEEE
T ss_conf             9889999999999849995786888885337999--999-99982997543486


No 182
>PRK05367 glycine dehydrogenase; Provisional
Probab=53.86  E-value=13  Score=15.72  Aligned_cols=59  Identities=29%  Similarity=0.538  Sum_probs=33.0

Q ss_pred             HHHHHHHHHH------HHHCC----C-----CCEEEEEECCCCC---CCH---HHHHHH--------HHHHCCCCC--CC
Q ss_conf             9999999999------98388----4-----7336985377887---402---578863--------442112222--22
Q gi|255764494|r  119 VLQKMKETAE------SFLGE----T-----VSKAVITVPAYFN---DAQ---RQATKD--------AGRIAGLDV--LR  167 (652)
Q Consensus       119 iL~~lk~~ae------~~l~~----~-----v~~~VitVP~~f~---~~q---R~a~~~--------Aa~~AGl~v--~~  167 (652)
                      +|++|+++|.      .++|.    .     |.+-|+.-|.|||   +.|   -|-.++        -+.+-|+++  ..
T Consensus        67 ~l~~l~~ia~kN~~~~sfIG~Gyy~t~~P~VI~Rnilenp~WYTaYTPYQpEiSQGrLeal~nfQtmi~dLTGm~vaNAS  146 (955)
T PRK05367         67 ALAELRAIASKNKVFRSYIGQGYYGTHTPPVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQTMVCDLTGLPIANAS  146 (955)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999999973885301034776687575200204535888645779976577668999999999999998687600432


Q ss_pred             CCCCHHHHHH
Q ss_conf             2210247888
Q gi|255764494|r  168 IINEPTAAAL  177 (652)
Q Consensus       168 li~EptAAal  177 (652)
                      |++|.||||=
T Consensus       147 llDeaTAaaE  156 (955)
T PRK05367        147 LLDEATAAAE  156 (955)
T ss_pred             HHHHHHHHHH
T ss_conf             1018999999


No 183
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=53.64  E-value=13  Score=15.69  Aligned_cols=46  Identities=20%  Similarity=0.263  Sum_probs=38.8

Q ss_pred             HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf             001100111101013563110146630785305--6778865410111
Q gi|255764494|r  309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK  354 (652)
Q Consensus       309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~  354 (652)
                      ......++++|++|++++++|+.|..-|=+|..  |.=-+.|++.|+.
T Consensus       274 ~~~~~~~~~Al~~A~i~~~~i~yI~aHgtgT~~gD~~E~~Al~~~f~~  321 (407)
T cd00828         274 KGIARAIRTALAKAGLSLDDLDVISAHGTSTPANDVAESRAIAEVAGA  321 (407)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf             678999999999719995456389951676866699999999998621


No 184
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=53.59  E-value=10  Score=16.63  Aligned_cols=47  Identities=13%  Similarity=0.221  Sum_probs=37.6

Q ss_pred             HHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf             0001100111101013563110146630785305--6778865410111
Q gi|255764494|r  308 IQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK  354 (652)
Q Consensus       308 ~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~  354 (652)
                      -......++++|++|++.+++|+.|..-|=+|..  |.=-+.|.+.||.
T Consensus       287 ~~~~~~~m~~Al~~agi~~~~i~yI~aHgtgT~~gD~~E~~al~~~fg~  335 (424)
T PRK06333        287 GEGARRAMEGALRQAGIPPEQVQHLNAHATSTPVGDLGEVAAIKKVFGH  335 (424)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
T ss_conf             3677999999999849991451879952787866699999999998587


No 185
>TIGR01166 cbiO cobalt ABC transporter, ATP-binding protein; InterPro: IPR005876   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This entry represents the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. This superfamily includes two groups, one which catalyses the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drives both the process of uptake and efflux.; GO: 0006824 cobalt ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=53.11  E-value=14  Score=15.63  Aligned_cols=111  Identities=18%  Similarity=0.218  Sum_probs=55.9

Q ss_pred             CCCEEECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHH
Q ss_conf             99899667898633308351100206754986872678765201986999759982799957958719999999999999
Q gi|255764494|r   45 EGERLVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMK  124 (652)
Q Consensus        45 ~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk  124 (652)
                      .|..+++-.+..    +-+.-.....+-++.-|.||+=|-+.....-        ++.|-.-+=-.+++||.+.+=.-|.
T Consensus        46 ~G~v~~dG~~l~----YsrkgL~~~R~~V~~VfQdPDDQlF~a~V~~--------DVaFGPlNLGL~e~Ev~~RV~eAL~  113 (190)
T TIGR01166        46 SGKVLLDGEPLD----YSRKGLLEVRQRVGLVFQDPDDQLFAADVDQ--------DVAFGPLNLGLSEAEVERRVREALT  113 (190)
T ss_pred             CCEEEECCEECC----CCCHHHHHHCCEEEEEEECHHHHCCCCCCCC--------CCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             555876785403----5724467525030037626344202676221--------0033545673371576787899998


Q ss_pred             HHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC-CCCCCCCHHHH
Q ss_conf             9999983884733698537788740257886344211222-22222102478
Q gi|255764494|r  125 ETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLD-VLRIINEPTAA  175 (652)
Q Consensus       125 ~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~-v~~li~EptAA  175 (652)
                      ..--..+.+..+++       |+.-||+.+--|+.+| ++ -+=+++||||-
T Consensus       114 ~vg~~~~~~rp~h~-------LS~GekkRvAIAGAvA-M~Pd~l~LDEPTAG  157 (190)
T TIGR01166       114 AVGISGLEERPTHL-------LSGGEKKRVAIAGAVA-MRPDVLLLDEPTAG  157 (190)
T ss_pred             HCCHHHHHHCCHHH-------CCCCCHHHHHHHHHHH-HCCCEEEEECCCCC
T ss_conf             60632244122411-------5586135777775886-16634664278889


No 186
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=53.09  E-value=13  Score=15.65  Aligned_cols=20  Identities=25%  Similarity=0.434  Sum_probs=16.3

Q ss_pred             EEEEECCCCEEEEEEEECCE
Q ss_conf             69980486606999998995
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKN   23 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~   23 (652)
                      .+|||+|-|+..+++++...
T Consensus         2 ylGiDIGGTki~~~l~d~~g   21 (256)
T PRK13311          2 YYGFDMGGTKIELGVFDENL   21 (256)
T ss_pred             EEEEECCCHHEEEEEEECCC
T ss_conf             99999341011028996999


No 187
>PRK13321 pantothenate kinase; Reviewed
Probab=52.79  E-value=14  Score=15.60  Aligned_cols=21  Identities=38%  Similarity=0.745  Sum_probs=18.2

Q ss_pred             EEEEECCCCEEEEEEEECCEE
Q ss_conf             699804866069999989955
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNV   24 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~   24 (652)
                      .+-||.|+|+.++++++++..
T Consensus         2 ~L~IDiGNT~ik~g~~~~~~~   22 (256)
T PRK13321          2 LLCIDVGNTNIVLGIFDGDQL   22 (256)
T ss_pred             EEEEEECCHHEEEEEEECCEE
T ss_conf             899998731519999989999


No 188
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=52.32  E-value=11  Score=16.44  Aligned_cols=45  Identities=20%  Similarity=0.200  Sum_probs=31.3

Q ss_pred             HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             001100111101013563110146630785305677886541011111
Q gi|255764494|r  309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSP  356 (652)
Q Consensus       309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~  356 (652)
                      ......|+++|++++++++|||.+++-=++-++  + +.+.+.+|.+.
T Consensus       230 ~~~~~~i~~~L~~~gl~~~DId~~i~HQ~n~~~--~-~~i~~~lgip~  274 (329)
T PRK07204        230 KYLMKFIDKLLMDTGYSLADIDLIVPHQASGPA--M-RLIRKKLGVDE  274 (329)
T ss_pred             HHHHHHHHHHHHHCCCCHHHCCEEEEECCCHHH--H-HHHHHHCCCCH
T ss_conf             626999999998719997889989981488899--9-99999809697


No 189
>TIGR00461 gcvP glycine dehydrogenase; InterPro: IPR003437   This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T . The reaction catalysed by this protein is:    Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0006544 glycine metabolic process, 0005961 glycine dehydrogenase complex (decarboxylating).
Probab=52.23  E-value=5  Score=18.93  Aligned_cols=46  Identities=33%  Similarity=0.564  Sum_probs=28.9

Q ss_pred             EEECCCCC---CCH------H-HHHHH----HHHHCCCCC--CCCCCCHHHHH----HHHHCCCCC
Q ss_conf             85377887---402------5-78863----442112222--22221024788----886034456
Q gi|255764494|r  140 ITVPAYFN---DAQ------R-QATKD----AGRIAGLDV--LRIINEPTAAA----LAYGLDKKD  185 (652)
Q Consensus       140 itVP~~f~---~~q------R-~a~~~----Aa~~AGl~v--~~li~EptAAa----l~Y~~~~~~  185 (652)
                      +==|.|||   +.|      | +|+++    ..-+.||++  -.|++|.||||    |+|++.|..
T Consensus        91 LEnPgWYTaYTPYQpEisQGRLEALLNFQtvv~DLTGL~~AnASLLDEgTAAaEAMals~~vSk~K  156 (965)
T TIGR00461        91 LENPGWYTAYTPYQPEISQGRLEALLNFQTVVLDLTGLEVANASLLDEGTAAAEAMALSFRVSKKK  156 (965)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             478784346788650132468999873444543002434654533217889999999987642222


No 190
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=52.22  E-value=6.8  Score=17.90  Aligned_cols=39  Identities=13%  Similarity=0.234  Sum_probs=16.8

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-EECCCCCCC
Q ss_conf             7199999999999999999983884733698-537788740
Q gi|255764494|r  110 YSPSQISAIVLQKMKETAESFLGETVSKAVI-TVPAYFNDA  149 (652)
Q Consensus       110 ~~peei~a~iL~~lk~~ae~~l~~~v~~~Vi-tVP~~f~~~  149 (652)
                      .+..++...-...-...|-- ....|+.+++ +.|..|...
T Consensus        23 ~s~~~L~~eA~~~Al~DAGl-~~~dID~~~~g~~~~~~~g~   62 (391)
T PRK08313         23 VSMAGLVREAIDRALADAGL-TFDDIDAVVVGKAPDFFEGV   62 (391)
T ss_pred             CCHHHHHHHHHHHHHHHCCC-CHHHCCEEEEECCCCCCCCC
T ss_conf             79999999999999997499-98998999997657645554


No 191
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=52.01  E-value=9.7  Score=16.71  Aligned_cols=46  Identities=28%  Similarity=0.474  Sum_probs=36.3

Q ss_pred             HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf             001100111101013563110146630785305--6778865410111
Q gi|255764494|r  309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK  354 (652)
Q Consensus       309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~  354 (652)
                      ......|+++|++|++++++|+.|+.-|=+|..  |.=-+.|++.|+.
T Consensus       275 ~~~~~~i~~al~~agi~~~~I~yIe~HgtGt~~gD~~E~~ai~~~f~~  322 (406)
T cd00834         275 EGAARAMRAALADAGLSPEDIDYINAHGTSTPLNDAAESKAIKRVFGE  322 (406)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf             999999999999858997445289970487867799999999998556


No 192
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=51.62  E-value=14  Score=15.47  Aligned_cols=46  Identities=24%  Similarity=0.240  Sum_probs=26.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHCCCC---------CCCCCCCCCCHHHHHHHHCC
Q ss_conf             01466307853056778865410111---------11113565310111110002
Q gi|255764494|r  329 IDEVVLVGGMTRMPKIQQSVQDFFNK---------SPSKGVNPDEVVAMGAAIQA  374 (652)
Q Consensus       329 I~~V~lvGGssriP~v~~~i~~~fg~---------~~~~~~npdeaVa~GAA~~a  374 (652)
                      -+.|++=||-|..+.+.+.+.+.+.+         ++..+---+.|-.+|||+.+
T Consensus       246 Pe~iviGGGvs~~~~l~~~l~~~~~~~~~~~~~~~~I~~a~lG~~AGliGAA~L~  300 (302)
T PRK13310        246 PHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH  300 (302)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf             8889997862570889999999999872674779848976746879999999863


No 193
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase); InterPro: IPR004654 This family describes one branch of the ROK superfamily of proteins that may have activity as glucokinase although many proteins are as yet uncharacterised.; GO: 0004340 glucokinase activity, 0006096 glycolysis, 0005737 cytoplasm.
Probab=50.92  E-value=12  Score=15.92  Aligned_cols=47  Identities=21%  Similarity=0.386  Sum_probs=27.0

Q ss_pred             CCCHHHHHHCCCCCCHH--CCCCCEEEEEEEECCCCCCH-HHHHHHHHHCCCC
Q ss_conf             42000011001111010--13563110146630785305-6778865410111
Q gi|255764494|r  305 NHLIQKTVEPCKKCLQD--AGLSPSDIDEVVLVGGMTRM-PKIQQSVQDFFNK  354 (652)
Q Consensus       305 ~~l~~~~~~~i~~~L~~--a~~~~~~I~~V~lvGGssri-P~v~~~i~~~fg~  354 (652)
                      -+.++++-+-+--.|.+  +-+.|+   .++|=||-|+- -.|++.|++-|.+
T Consensus       236 ~~~~~~vA~~~g~~l~~las~~nPs---~ivlGGG~S~aG~ll~~~i~k~y~~  285 (326)
T TIGR00744       236 VEVVEEVAKYLGLVLADLASLLNPS---KIVLGGGLSDAGELLLDKIKKEYKK  285 (326)
T ss_pred             EHHHHHHHHHHHHHHHHHHHHCCCC---EEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             0358899999999987787523886---2787673262213556544443431


No 194
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=50.92  E-value=6.5  Score=18.05  Aligned_cols=41  Identities=20%  Similarity=0.217  Sum_probs=24.0

Q ss_pred             HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH-HHHHHHHH
Q ss_conf             001100111101013563110146630785305-67788654
Q gi|255764494|r  309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM-PKIQQSVQ  349 (652)
Q Consensus       309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri-P~v~~~i~  349 (652)
                      ......++++|++++++++|||.++.-=.+.|| ..+.+.+.
T Consensus       272 ~~~~~~~~~~L~~~gl~~~dId~~vpHQAn~ri~~~v~~~l~  313 (378)
T PRK06816        272 VWGVDPYLELVDKRRLDPDAIDHFLPHYSSEYFREKIVELLA  313 (378)
T ss_pred             HHHHHHHHHHHHHCCCCHHHCCEEECCCCHHHHHHHHHHHHH
T ss_conf             999999999999849998998888126105999999999987


No 195
>KOG2411 consensus
Probab=50.91  E-value=6  Score=18.30  Aligned_cols=26  Identities=38%  Similarity=0.523  Sum_probs=16.8

Q ss_pred             EEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf             0146630785305--6778865410111
Q gi|255764494|r  329 IDEVVLVGGMTRM--PKIQQSVQDFFNK  354 (652)
Q Consensus       329 I~~V~lvGGssri--P~v~~~i~~~fg~  354 (652)
                      +++|++=|||.||  |-+|+.+-+-..+
T Consensus       519 ~NGvElGGGSiRIhn~diQr~vLe~iLk  546 (628)
T KOG2411         519 VNGVELGGGSIRIHNPDIQRYVLEDILK  546 (628)
T ss_pred             ECCEEECCCEEEECCHHHHHHHHHHHHC
T ss_conf             7147624734675288899999999855


No 196
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=50.64  E-value=9.3  Score=16.88  Aligned_cols=46  Identities=26%  Similarity=0.323  Sum_probs=32.3

Q ss_pred             HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             0011001111010135631101466307853056778865410111111
Q gi|255764494|r  309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPS  357 (652)
Q Consensus       309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~  357 (652)
                      ......++++|++++++++|||.+++-=|+-   .+.+.+.+.+|.++.
T Consensus       223 ~~~~~~i~~~L~~~g~~~~did~~v~Hq~~~---~~~~~~~~~lgi~~~  268 (320)
T cd00830         223 RLMPESIEEALEKAGLTPDDIDWFVPHQANL---RIIEAVAKRLGLPEE  268 (320)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEEECCCH---HHHHHHHHHHCCCHH
T ss_conf             6569999999998599910165799706878---999999998096989


No 197
>PRK13318 pantothenate kinase; Reviewed
Probab=50.39  E-value=15  Score=15.33  Aligned_cols=21  Identities=33%  Similarity=0.767  Sum_probs=18.1

Q ss_pred             EEEEECCCCEEEEEEEECCEE
Q ss_conf             699804866069999989955
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNV   24 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~   24 (652)
                      ++-||.|+|+.++++++++..
T Consensus         2 ~L~IDiGNT~ik~~l~~~~~~   22 (258)
T PRK13318          2 LLAIDVGNTNTVFGLFDGGKL   22 (258)
T ss_pred             EEEEEECCCCEEEEEEECCEE
T ss_conf             899998887149999989999


No 198
>KOG2525 consensus
Probab=50.29  E-value=15  Score=15.32  Aligned_cols=130  Identities=25%  Similarity=0.316  Sum_probs=68.5

Q ss_pred             EEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             99957958719999999999999999998388473369853778874025788634421122222222102478888603
Q gi|255764494|r  102 WIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGL  181 (652)
Q Consensus       102 ~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~  181 (652)
                      .|+++|+..|.| ..+.++-.+.+.-+....+    . ++-|.||-                    +     =+.+|+.+
T Consensus       115 rIriNGqpIS~e-~F~~~f~~v~~~lk~~~~~----~-~~~p~yF~--------------------f-----LT~lAF~~  163 (496)
T KOG2525         115 RIRINGQPISEE-KFTKYFWEVYERLKSTKLK----E-VSMPTYFE--------------------F-----LTLLAFHV  163 (496)
T ss_pred             EEEECCEECCHH-HHHHHHHHHHHHHHHHHCC----C-CCCCCHHH--------------------H-----HHHHHHEE
T ss_conf             588899878999-9999999999988776306----5-67873555--------------------6-----67544201


Q ss_pred             CCCCCCEEEEEEEC-CCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-----C---HHHHHH
Q ss_conf             44565507998724-41145431010231465420133224552134476655367876420134-----3---024478
Q gi|255764494|r  182 DKKDARTVIVFDFG-GGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGI-----D---LKQDTL  252 (652)
Q Consensus       182 ~~~~~~~vlV~D~G-ggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~-----d---~~~~~~  252 (652)
                      +.+++--++|+-.| ||-+|.+=+ +.+.+.     .|-+.||.++.. .|-+-+.+.-..|-|+     .   ....+.
T Consensus       164 F~~enVdvaViEvGlGG~~DaTNv-I~kpvv-----cgITslG~DH~~-~LG~tL~eIA~eKAGIfK~gvpaft~~q~~e  236 (496)
T KOG2525         164 FVKENVDVAVIEVGLGGELDATNV-IEKPVV-----CGITSLGLDHTS-FLGNTLSEIAWEKAGIFKEGVPAFTVPQPPE  236 (496)
T ss_pred             EEECCCCEEEEEECCCCCCCCCCC-CCCCEE-----EEEEECCCCHHH-HHHHHHHHHHHHHCCCCCCCCCEEECCCCHH
T ss_conf             555588689998435666566533-136458-----998405775288-8865899998874462405885487588578


Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             99999999998854115
Q gi|255764494|r  253 ALQRLKEAAEKAKIELS  269 (652)
Q Consensus       253 a~~rL~~~~e~aK~~LS  269 (652)
                      ++.-|...|+.....|.
T Consensus       237 ~~nvL~~ra~e~~~~L~  253 (496)
T KOG2525         237 ALNVLKERASELGVPLF  253 (496)
T ss_pred             HHHHHHHHHHHCCCCCE
T ss_conf             89999998873378835


No 199
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor; InterPro: IPR006529   These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs. The well-characterised members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (IPR006509 from INTERPRO). Members of this subfamily are found in plants, metazoa and fungi. ; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus.
Probab=50.16  E-value=15  Score=15.31  Aligned_cols=17  Identities=18%  Similarity=0.593  Sum_probs=8.7

Q ss_pred             EECCCCCCHHH------HHHHHHHCC
Q ss_conf             63078530567------788654101
Q gi|255764494|r  333 VLVGGMTRMPK------IQQSVQDFF  352 (652)
Q Consensus       333 ~lvGGssriP~------v~~~i~~~f  352 (652)
                      |.|||   +|.      |+++|+.|-
T Consensus       338 lyi~n---LP~~L~d~Qv~eLL~~FG  360 (577)
T TIGR01642       338 LYIGN---LPLYLKDDQVKELLESFG  360 (577)
T ss_pred             EEECC---CCCCCCHHHHHHHHHCCC
T ss_conf             46627---876555178898540457


No 200
>TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family; InterPro: IPR011816    Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (IPR011813 from INTERPRO). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.; GO: 0008233 peptidase activity, 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic.
Probab=49.66  E-value=11  Score=16.25  Aligned_cols=43  Identities=26%  Similarity=0.515  Sum_probs=31.9

Q ss_pred             CEEECHHHHHHHHHHHH---------HHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             95871999999999999---------9999998388473369853778874025788634421122
Q gi|255764494|r  107 GKQYSPSQISAIVLQKM---------KETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGL  163 (652)
Q Consensus       107 ~~~~~peei~a~iL~~l---------k~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl  163 (652)
                      .+.||=.||+-++|+++         ...|+.|+|.++.+.  |+            -+||-||||
T Consensus        93 E~~~sK~~ILE~YLN~iYfG~G~YG~~~AA~~YFgK~v~~L--tl------------~EaA~LAGl  144 (700)
T TIGR02074        93 EQKLSKDEILELYLNQIYFGNGAYGVEAAAQVYFGKSVNDL--TL------------AEAALLAGL  144 (700)
T ss_pred             HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHC--CH------------HHHHHHHHH
T ss_conf             53059579997630242116884158899976069776527--88------------899999986


No 201
>TIGR01129 secD protein-export membrane protein SecD; InterPro: IPR005791    Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome.     The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB  is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains . Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices.     This entry describes the SecD family of transport proteins. Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=49.57  E-value=15  Score=15.24  Aligned_cols=10  Identities=20%  Similarity=0.587  Sum_probs=6.1

Q ss_pred             CEEEEEECCC
Q ss_conf             3369853778
Q gi|255764494|r  136 SKAVITVPAY  145 (652)
Q Consensus       136 ~~~VitVP~~  145 (652)
                      +++||-+|..
T Consensus       132 ~rI~VelPG~  141 (522)
T TIGR01129       132 DRIVVELPGV  141 (522)
T ss_pred             CEEEEEECCC
T ss_conf             4689984786


No 202
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=49.31  E-value=13  Score=15.75  Aligned_cols=46  Identities=26%  Similarity=0.412  Sum_probs=36.0

Q ss_pred             HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf             001100111101013563110146630785305--6778865410111
Q gi|255764494|r  309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK  354 (652)
Q Consensus       309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~  354 (652)
                      ......++++|+++++++++|+.|+.-|=+|..  +.=-+.|.+.|+.
T Consensus       276 ~g~~~a~~~al~~agi~~~~i~yIe~hgtgt~~~D~~E~~al~~~f~~  323 (411)
T PRK07314        276 EGAARAMVAALKDAGINPEDIDYINAHGTSTPAGDKAETQAIKRVFGE  323 (411)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf             567889999999858996332179973687877798899999998655


No 203
>PRK06364 consensus
Probab=49.21  E-value=7.8  Score=17.43  Aligned_cols=16  Identities=6%  Similarity=0.310  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHCCCC
Q ss_conf             6553678764201343
Q gi|255764494|r  231 LVEHICDTFKKENGID  246 (652)
Q Consensus       231 l~~~~~~~~~~~~~~d  246 (652)
                      ++.+...++-.+|+..
T Consensus       151 ~~al~a~~y~~~~g~~  166 (389)
T PRK06364        151 MAAIIARRYMHDFNVE  166 (389)
T ss_pred             HHHHHHHHHHHHHCCC
T ss_conf             9999999999996969


No 204
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=49.07  E-value=7.1  Score=17.75  Aligned_cols=46  Identities=9%  Similarity=0.099  Sum_probs=32.5

Q ss_pred             CHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf             0000110011110101356311014663078530567788654101111
Q gi|255764494|r  307 LIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKS  355 (652)
Q Consensus       307 l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~  355 (652)
                      -+..+...++++|+.++++++|||.+++-=.+-||   -+.+.+.+|.+
T Consensus       240 av~~vp~~i~~~L~~agl~~~DId~~v~HQAN~ri---ie~i~k~Lgl~  285 (353)
T PRK12880        240 ALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYL---VDCIKEELKLN  285 (353)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHH---HHHHHHHCCCC
T ss_conf             99999999999999839997886568654688999---99999980989


No 205
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=49.02  E-value=11  Score=16.34  Aligned_cols=101  Identities=26%  Similarity=0.340  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH---H-HHHC----CC
Q ss_conf             999999999999999998388-4733698537788740257886344211222222221024788---8-8603----44
Q gi|255764494|r  113 SQISAIVLQKMKETAESFLGE-TVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA---L-AYGL----DK  183 (652)
Q Consensus       113 eei~a~iL~~lk~~ae~~l~~-~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa---l-~Y~~----~~  183 (652)
                      ..+.+.-=...++.|+.+|.. -+.+-.=..|++.+.-|.|..--|-.+|==.-+-|.+|||.|.   | .--+    +.
T Consensus       119 vhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~L  198 (256)
T COG4598         119 VHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDL  198 (256)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf             67655778899999999999717154430386114741788899999873597668645984327989999999999999


Q ss_pred             -CCCCEEEEE--EECCCEEEEE--EEEECCCEEEEE
Q ss_conf             -565507998--7244114543--101023146542
Q gi|255764494|r  184 -KDARTVIVF--DFGGGTFDVS--LLEMGDGVFEVK  214 (652)
Q Consensus       184 -~~~~~vlV~--D~Gggt~dvs--i~~~~~~~~~vl  214 (652)
                       .+.++.+++  .||= .-|||  |+-..+|.++.-
T Consensus       199 AeEgrTMv~VTHEM~F-AR~Vss~v~fLh~G~iEE~  233 (256)
T COG4598         199 AEEGRTMVVVTHEMGF-ARDVSSHVIFLHQGKIEEE  233 (256)
T ss_pred             HHHCCEEEEEEEEHHH-HHHHHHHEEEEECCEECCC
T ss_conf             9718748999620467-7753001687554440465


No 206
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31).  This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein.  EcHsp31 has chaperone activity.  Ydr533c is upregulated in response to various stress conditions along with the heat shock family.  EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A.   The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different 
Probab=48.92  E-value=8.5  Score=17.14  Aligned_cols=60  Identities=20%  Similarity=0.349  Sum_probs=38.4

Q ss_pred             HHHCCCCCCHHCCCCCEEEEEEEECCCCC------CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             11001111010135631101466307853------056778865410111111135653101111100022
Q gi|255764494|r  311 TVEPCKKCLQDAGLSPSDIDEVVLVGGMT------RMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAG  375 (652)
Q Consensus       311 ~~~~i~~~L~~a~~~~~~I~~V~lvGGss------riP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~  375 (652)
                      ....++..+.-+.+.+++.|.|++.||-.      .-+.++++++.+....     -|--||+.|.|....
T Consensus        73 ~~~~l~~~~~l~~v~~~~ydai~~pGG~g~m~dl~~~~~l~~l~~~~~~~g-----k~vaaiCHGp~~L~~  138 (221)
T cd03141          73 FKKKLANTKKLSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENG-----KVVAAVCHGPAALLN  138 (221)
T ss_pred             HHHHHHCCCCHHHCCHHHCCEEEECCCCCHHHHHHCCHHHHHHHHHHHHCC-----CEEEEECCHHHHHHH
T ss_conf             999885878967899878838998998545877441699999999999749-----859997630798875


No 207
>PRK08234 consensus
Probab=48.84  E-value=16  Score=15.16  Aligned_cols=65  Identities=23%  Similarity=0.324  Sum_probs=34.1

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCC--CCCCHHHHHHHHH---HHCCCCCCCCCCCH
Q ss_conf             58719999999999999999998388473369853--778--8740257886344---21122222222102
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAY--FNDAQRQATKDAG---RIAGLDVLRIINEP  172 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~--f~~~qR~a~~~Aa---~~AGl~v~~li~Ep  172 (652)
                      +.++|++|.+..++.+.+..-..-...|+++++.+  |+.  .....|++.+.|.   ...++.+-|..-..
T Consensus        22 ~~~~~~~L~a~~i~~~l~r~~~~~~~~Id~vi~G~v~~~g~~~~n~aR~aaL~aGlp~~vpa~tVnr~C~SG   93 (400)
T PRK08234         22 RDVRPDDLAAVVIRALIERNPNVPVEQIDDVVFGNANQAGEDNRNVARMAALLAGLPVEVAGVTVNRLCGSG   93 (400)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCHHHHH
T ss_conf             889889999999999997468969899898999906765644466999999976999888616771530359


No 208
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=48.83  E-value=10  Score=16.53  Aligned_cols=16  Identities=19%  Similarity=0.345  Sum_probs=7.8

Q ss_pred             CCCCHHHHHHHHCCCC
Q ss_conf             6531011111000223
Q gi|255764494|r  361 NPDEVVAMGAAIQAGV  376 (652)
Q Consensus       361 npdeaVa~GAA~~a~~  376 (652)
                      |.+..-.+|+|++=|+
T Consensus       500 ~ts~~y~RggalfFa~  515 (1466)
T TIGR00956       500 NTSDFYSRGGALFFAI  515 (1466)
T ss_pred             CCCCEEEHHHHHHHHH
T ss_conf             4343020599999999


No 209
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=48.64  E-value=16  Score=15.14  Aligned_cols=49  Identities=22%  Similarity=0.292  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             99999999998388473369853778874025788634421122222222102478
Q gi|255764494|r  120 LQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       120 L~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      +..+++..+. .+  ++-.||-||++|   ...|.++|.. ||++.+-.|.|-.-.
T Consensus        69 f~tV~eAv~~-~~--~d~SvIfVPp~~---a~dAilEAi~-agI~liV~ITEgIP~  117 (309)
T PTZ00187         69 FGTVAEAKKA-TG--ADASVIYVPPPH---AAAAIIEAIE-AEIPLVVVITEGIPQ  117 (309)
T ss_pred             CCCHHHHHHH-HC--CCEEEEECCCCC---CHHHHHHHHH-CCCCEEEEECCCCCH
T ss_conf             6659999985-68--987999626411---1889999997-799879993389888


No 210
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=48.59  E-value=7  Score=17.82  Aligned_cols=44  Identities=20%  Similarity=0.197  Sum_probs=28.5

Q ss_pred             HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf             00110011110101356311014663078530567788654101111
Q gi|255764494|r  309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKS  355 (652)
Q Consensus       309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~  355 (652)
                      ....+.++++|++++++++|||.+++-=.+.++   .+.+.+.+|.+
T Consensus       240 ~~~~~~~~~~L~~~gl~~~dId~~v~HQan~~~---~~~i~~~Lgi~  283 (339)
T PRK09258        240 ELAVDTWEAFLQQLGWSVEQVDKVVCHQVGAAH---TRAVLKALGID  283 (339)
T ss_pred             HHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHH---HHHHHHHCCCC
T ss_conf             999999999999839998998899862576999---99999981968


No 211
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.47  E-value=12  Score=16.03  Aligned_cols=49  Identities=24%  Similarity=0.356  Sum_probs=38.5

Q ss_pred             CHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHH--HHHHHCCCCC
Q ss_conf             000011001111010135631101466307853056778--8654101111
Q gi|255764494|r  307 LIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQ--QSVQDFFNKS  355 (652)
Q Consensus       307 l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~--~~i~~~fg~~  355 (652)
                      .-+.....++.+|+++++++++|+.|-.-|=||..--..  ..|+.+||..
T Consensus       274 ~g~Ga~~am~~AL~~Agl~~~~idYinaHgTsT~~nD~~E~~Ai~~vfg~~  324 (412)
T COG0304         274 DGEGAIRAMRAALADAGLTPEDIDYINAHGTSTPANDKAESLAIKRVFGEH  324 (412)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHCCEEECCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             875699999999998499976799894787668776599999999984225


No 212
>PRK09557 fructokinase; Reviewed
Probab=48.33  E-value=16  Score=15.11  Aligned_cols=20  Identities=45%  Similarity=0.581  Sum_probs=16.8

Q ss_pred             EEEECCCCEEEEEEEECCEE
Q ss_conf             99804866069999989955
Q gi|255764494|r    5 IGIDLGTTNSCVAIMDGKNV   24 (652)
Q Consensus         5 iGIDlGtt~s~va~~~~~~~   24 (652)
                      ||||+|-|+..+++++..+-
T Consensus         3 iGiDIGGT~i~~~lvd~~G~   22 (301)
T PRK09557          3 IGIDLGGTKIEVIALDDAGE   22 (301)
T ss_pred             EEEEECCCEEEEEEEECCCC
T ss_conf             99998732099999979997


No 213
>pfam00885 DMRL_synthase 6,7-dimethyl-8-ribityllumazine synthase. This family includes the beta chain of 6,7-dimethyl-8- ribityllumazine synthase EC:2.5.1.9, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function.
Probab=48.20  E-value=5.5  Score=18.59  Aligned_cols=73  Identities=30%  Similarity=0.479  Sum_probs=46.4

Q ss_pred             EEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             68731100001234200001100111101013563110146630785305677886541011111113565310111110
Q gi|255764494|r  292 NMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAA  371 (652)
Q Consensus       292 ~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA  371 (652)
                      ++-|=...|.+   ++.++..+-..+.|.+.|.+.++|+ ++-|=|+--+|..-+.+-+        +-+.|-.||.||-
T Consensus         5 kI~IV~s~~n~---~i~~~l~~~a~~~l~~~g~~~~~i~-~~~VPGa~EiP~~~~~l~~--------~~~~d~iIalG~V   72 (144)
T pfam00885         5 RIAIVVARFNA---DITDRLLEGALDALKRHGVSEEDID-VVRVPGAFELPLAAKKLAK--------SGRYDAVVALGAV   72 (144)
T ss_pred             EEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCHHHEE-EEECCCHHHHHHHHHHHHH--------CCCCCEEEEEEEE
T ss_conf             89999803759---9999999999999998699931058-9987968899999999986--------4898879999999


Q ss_pred             HCCCC
Q ss_conf             00223
Q gi|255764494|r  372 IQAGV  376 (652)
Q Consensus       372 ~~a~~  376 (652)
                      +.+..
T Consensus        73 IkGeT   77 (144)
T pfam00885        73 IRGGT   77 (144)
T ss_pred             EECCC
T ss_conf             83798


No 214
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=47.92  E-value=7.5  Score=17.59  Aligned_cols=48  Identities=25%  Similarity=0.402  Sum_probs=36.3

Q ss_pred             HHHHHHCCCCCCHHCCCCCEEEEEEEECCCC-CCHHHHHHHHHHCCCCC
Q ss_conf             0001100111101013563110146630785-30567788654101111
Q gi|255764494|r  308 IQKTVEPCKKCLQDAGLSPSDIDEVVLVGGM-TRMPKIQQSVQDFFNKS  355 (652)
Q Consensus       308 ~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGs-sriP~v~~~i~~~fg~~  355 (652)
                      .+-..+..+++|+++|++++|||.|+.+=-+ ...|.+--.|.+.+|-.
T Consensus        86 ~~la~~Aa~~AL~~ag~~~~dId~lI~~Tst~~~~Ps~a~~v~~~LGl~  134 (361)
T cd00831          86 RELAEEAARGALDEAGLRPSDIDHLVVNTSTGNPTPSLDAMLINRLGLR  134 (361)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCHHHHHHHHHCCC
T ss_conf             9999999999999819898999999998659999897699999973899


No 215
>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family. Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to pfam01844, HNH endonuclease.
Probab=47.70  E-value=16  Score=15.04  Aligned_cols=55  Identities=25%  Similarity=0.304  Sum_probs=32.8

Q ss_pred             EEEECCCCEEEEEEEE--CC-EEEEEECCCCCCCCCEEEEEECCCCE--EECHHHHHHHHHCCCH
Q ss_conf             9980486606999998--99-55997568986256279999489989--9667898633308351
Q gi|255764494|r    5 IGIDLGTTNSCVAIMD--GK-NVRVIENAEGTRTTPSMVGFTDEGER--LVGQPAKRQAVTNPSN   64 (652)
Q Consensus         5 iGIDlGtt~s~va~~~--~~-~~~ii~n~~g~r~~PS~V~~~~~~~~--~vG~~A~~~~~~~p~~   64 (652)
                      ||||||-.|+.|+.+.  .| ..+-+.|..+     +++-+..++-.  ..|..|+++..|+..+
T Consensus         2 I~IDLg~KnTGvfs~~~~~~a~l~~ldn~~~-----~v~~~d~~s~~lsq~~Rra~RH~~R~~~R   61 (802)
T TIGR03031         2 IGIDLGGKNTGVFSSHLEAFAELPNLDNTKY-----SVILIDHNSFQLSQAQRRATRHRVRNKKR   61 (802)
T ss_pred             CEEECCCCCCEEEHHHHHHCCCCCCCCCCCC-----CEEEEECCCEEEHHCCHHHHHHHHHHHHH
T ss_conf             4341377521212677751266743123456-----55997177553121100456788622378


No 216
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=47.57  E-value=7.7  Score=17.48  Aligned_cols=40  Identities=20%  Similarity=0.499  Sum_probs=29.1

Q ss_pred             HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf             001100111101013563110146630785305677886541011
Q gi|255764494|r  309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN  353 (652)
Q Consensus       309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg  353 (652)
                      +-..+..+++|+..+.     +.++++||-+.--.+|+++++...
T Consensus       247 ~~L~~kt~rAl~~~~~-----~~lvi~GGVaaN~~LR~~l~~~~~  286 (342)
T COG0533         247 DMLVEKTERALKHTGK-----KELVIAGGVAANSRLREMLEEMCK  286 (342)
T ss_pred             HHHHHHHHHHHHHHCC-----CEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             9999999999998099-----989993558775999999999887


No 217
>PRK13319 consensus
Probab=47.47  E-value=16  Score=15.01  Aligned_cols=21  Identities=29%  Similarity=0.697  Sum_probs=18.1

Q ss_pred             EEEEECCCCEEEEEEEECCEE
Q ss_conf             699804866069999989955
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNV   24 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~   24 (652)
                      ++-||.|+|+.++++++++..
T Consensus         2 ~L~iDIGNT~ik~gl~~~~~l   22 (258)
T PRK13319          2 ILVLDVGNTNIVLGVYEGKEL   22 (258)
T ss_pred             EEEEEECCCCEEEEEEECCEE
T ss_conf             899998744169999989999


No 218
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A; InterPro: IPR013483   The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , .    In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) .   This entry represents the bacterial form of MoaA (molybdenum cofactor biosynthesis protein A). The MoaA protein is a member of the wider S-adenosylmethionine(SAM)-dependent enzyme family which catalyze the formation of protein and/or substrate radicals by reductive cleavage of SAM via a [4Fe-4S] cluster. Monomeric and homodimeric forms of MoaA have been observed in vivo, and it is not clear what the physiologically relevant form of the enzyme is . The core of each monomer consists of an incomplete TIM barrel, formed by the N-terminal region of the protein, containing a [4Fe-4S] cluster. The C-terminal region of the protein, which also contains a [4Fe-4S] cluster consists of a beta-sheet covering the lateral opening of the barrel, an extended loop and three alpha helices. The N-terminal [4Fe-4S] cluster is coordinated with 3 cysteines and an exchangeable SAM molecule, while the C-terminal [4Fe-4S], also coordinated with 3 cysteines, is the binding and activation site for GTP .; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=47.38  E-value=16  Score=15.00  Aligned_cols=104  Identities=24%  Similarity=0.374  Sum_probs=64.9

Q ss_pred             CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             314654201332245521344766553678764201-----343024478999999999988541155650358630443
Q gi|255764494|r  208 DGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKEN-----GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFIS  282 (652)
Q Consensus       208 ~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~-----~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~  282 (652)
                      -|+=+|.=|+|.+-| =.|++..+     ..+.+..     .+-+++|-.   .|.+.|..+|++  .-+..+|++++  
T Consensus        61 ~Gv~KvRlTGGEPLl-R~~l~~lv-----~~~~~~~g~~~~di~lTTNG~---~L~~~a~~L~eA--GL~rvNvSLDs--  127 (346)
T TIGR02666        61 LGVRKVRLTGGEPLL-RKDLVELV-----ARLAALPGIEIEDIALTTNGL---LLERHAKDLKEA--GLKRVNVSLDS--  127 (346)
T ss_pred             CCCEEEEEECCCCCC-CCCHHHHH-----HHHHHCCCCCCCEEEECCCHH---HHHHHHHHHHHC--CCCCEEEEEEC--
T ss_conf             497168752777441-36758999-----999842785433554100522---358899999971--88803654014--


Q ss_pred             CCCCCCCEEEEEECCCCCCCCC-CC-CHHHHHHCCCCCCHHCCCCCEEEEEEEECCC
Q ss_conf             4678872126873110000123-42-0000110011110101356311014663078
Q gi|255764494|r  283 ANSAGAQHLNMKLTRAQFERLV-NH-LIQKTVEPCKKCLQDAGLSPSDIDEVVLVGG  337 (652)
Q Consensus       283 ~~~~~g~d~~~~itR~~fe~l~-~~-l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGG  337 (652)
                                  +.++.|.++. .. -++++++-|+.|++ +|+.+=-|+.|++=|=
T Consensus       128 ------------Ld~~~F~~It~~~~~l~~Vl~Gi~aA~~-~Gl~~vKlN~V~~~G~  171 (346)
T TIGR02666       128 ------------LDPERFAKITRRGGRLEQVLAGIDAALE-AGLKPVKLNTVVLRGV  171 (346)
T ss_pred             ------------CCHHHHHHHHCCCCCHHHHHHHHHHHHH-CCCCCEEEEEEECCCC
T ss_conf             ------------8889999985789988899999999996-5998314766762788


No 219
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=47.24  E-value=12  Score=16.05  Aligned_cols=130  Identities=22%  Similarity=0.348  Sum_probs=60.9

Q ss_pred             EECCEEEEEECCC--CCCCCCEEEEE---ECCCCE-EECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCEE
Q ss_conf             9899559975689--86256279999---489989-96678986333083511002067549868726787652019869
Q gi|255764494|r   19 MDGKNVRVIENAE--GTRTTPSMVGF---TDEGER-LVGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTVAKDASLVPFK   92 (652)
Q Consensus        19 ~~~~~~~ii~n~~--g~r~~PS~V~~---~~~~~~-~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~   92 (652)
                      +.+|.+.|+.-+.  ||.+.=|.++=   ..+|.. ++|.+=.    .-..+....+.|-||-=|....      .+.| 
T Consensus        28 i~~GEiViltGPSGSGKTTLLtLiG~LR~~Q~G~L~vlg~~L~----ga~~~~l~~~RR~iGyIFQ~HN------Ll~~-   96 (220)
T TIGR02982        28 INPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELK----GASKKELVQVRRNIGYIFQAHN------LLGF-   96 (220)
T ss_pred             ECCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHC----CCCHHHHHHHHHHCCCEECCCH------HCHH-
T ss_conf             7176479843788984688999887625655560478220102----6788899999876391441200------0100-


Q ss_pred             EEECCCCEEEEEECCEEECHHH---HHHHHH-----HHHHHHHHHHHCC-CCCEEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             9975998279995795871999---999999-----9999999998388-473369853778874025788634421122
Q gi|255764494|r   93 IVEGKGGDAWIEAQGKQYSPSQ---ISAIVL-----QKMKETAESFLGE-TVSKAVITVPAYFNDAQRQATKDAGRIAGL  163 (652)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~pee---i~a~iL-----~~lk~~ae~~l~~-~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl  163 (652)
                                       +|+.|   +...+-     ...+..|+..|.. -..+=+=-.|..-+.-|||.+-=|=.+..=
T Consensus        97 -----------------LTA~QNVqM~~eL~~~~~~~~~~~~a~~~L~~VGL~~~~~y~P~~LSGGQKQRVAIARALv~~  159 (220)
T TIGR02982        97 -----------------LTARQNVQMALELQPNLSAQEAREKARAMLEAVGLGDRLDYYPENLSGGQKQRVAIARALVAR  159 (220)
T ss_pred             -----------------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             -----------------017788864898876116889999999999860601255405243678616899999997338


Q ss_pred             CCCCCCCCHHHHH
Q ss_conf             2222221024788
Q gi|255764494|r  164 DVLRIINEPTAAA  176 (652)
Q Consensus       164 ~v~~li~EptAAa  176 (652)
                      +-+=|=+|||||-
T Consensus       160 P~LvLADEPTAAL  172 (220)
T TIGR02982       160 PKLVLADEPTAAL  172 (220)
T ss_pred             CCEEECCCCCHHH
T ss_conf             9767625772332


No 220
>pfam08904 DUF1849 Domain of unknown function (DUF1849). This family of proteins are functionally uncharacterized.
Probab=47.14  E-value=13  Score=15.85  Aligned_cols=20  Identities=25%  Similarity=0.571  Sum_probs=16.0

Q ss_pred             CCCCCCCCHHHHCCCCHHHH
Q ss_conf             44353200001001100122
Q gi|255764494|r  461 PKGTPQIEVAFDIDANGIVQ  480 (652)
Q Consensus       461 ~~G~~~I~vtf~id~nGil~  480 (652)
                      +.+.|..+++|++..||+..
T Consensus       209 ~~~~P~Yeis~~l~eNGV~~  228 (252)
T pfam08904       209 GDGLPVYRMSFKLYENGVSR  228 (252)
T ss_pred             CCCCCCEEEEEEECCCCCEE
T ss_conf             88897289999992788507


No 221
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=46.91  E-value=8  Score=17.38  Aligned_cols=36  Identities=31%  Similarity=0.304  Sum_probs=29.2

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|...+--|||.+--|+.+|-=.-+=+++|||++-
T Consensus       136 ~~P~~LSGGqrQRvaIA~aLa~~P~ililDEPTs~L  171 (277)
T PRK13642        136 REPARLSGGQKQRVAVAGIIALRPEIIILDESTSML  171 (277)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             791228999999999999996699999995887658


No 222
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=46.03  E-value=10  Score=16.46  Aligned_cols=17  Identities=29%  Similarity=0.389  Sum_probs=7.2

Q ss_pred             EEECCCCCCHHHHHHHH
Q ss_conf             66307853056778865
Q gi|255764494|r  332 VVLVGGMTRMPKIQQSV  348 (652)
Q Consensus       332 V~lvGGssriP~v~~~i  348 (652)
                      +.|-||+|-+|..+.+.
T Consensus        27 l~lsGGstp~~~y~~L~   43 (219)
T cd01400          27 LALSGGSTPKPLYELLA   43 (219)
T ss_pred             EEECCCCCHHHHHHHHH
T ss_conf             99848977999999985


No 223
>TIGR03150 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2. FabB sequences should fall well below the noise cutoff of this model.
Probab=45.90  E-value=15  Score=15.37  Aligned_cols=45  Identities=22%  Similarity=0.446  Sum_probs=34.4

Q ss_pred             HHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf             01100111101013563110146630785305--6778865410111
Q gi|255764494|r  310 KTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK  354 (652)
Q Consensus       310 ~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~  354 (652)
                      .....++++|+++++++++|+.|+.-|=+|..  |.=-+.|++.||.
T Consensus       276 ~~~~~i~~al~~agi~~~~I~yIe~Hgtgt~~~D~~E~~al~~~fg~  322 (407)
T TIGR03150       276 GAARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRVFGD  322 (407)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf             78889999999868998633499973687877699999999998625


No 224
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=45.75  E-value=8.9  Score=17.00  Aligned_cols=50  Identities=16%  Similarity=0.347  Sum_probs=36.7

Q ss_pred             CCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCC--CHHHHHHHHHHCCCCC
Q ss_conf             2000011001111010135631101466307853--0567788654101111
Q gi|255764494|r  306 HLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMT--RMPKIQQSVQDFFNKS  355 (652)
Q Consensus       306 ~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGss--riP~v~~~i~~~fg~~  355 (652)
                      +..+-.....+++|+++++++++||.|+.+.-+.  ..|..--.|.+.+|..
T Consensus        47 ~~~~ma~~Aa~~aL~~a~~~~~~Idlli~~s~~~~~~~p~~a~~i~~~Lgl~   98 (324)
T cd00827          47 DVPTMAVEAARRALERAGIDPDDIGLLIVATESPIDKGKSAATYLAELLGLT   98 (324)
T ss_pred             CHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHCCC
T ss_conf             9999999999999998498988997999932577867974999999985899


No 225
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=45.40  E-value=8.6  Score=17.13  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=28.5

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      --|...+--|||.+--|..+|-=.-+-+++|||++-
T Consensus       133 r~p~~LSGGQrQRvaIA~aLa~~P~lLilDEPTs~L  168 (276)
T PRK13650        133 REPARLSGGQKQRVAIAGAVAMRPKIIILDEATSML  168 (276)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             890338999999999999997399999983886658


No 226
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=45.27  E-value=18  Score=14.78  Aligned_cols=61  Identities=20%  Similarity=0.163  Sum_probs=40.1

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC-EEEEEEECCCEEEE
Q ss_conf             369853778874025788634421122222222102478888603445655-07998724411454
Q gi|255764494|r  137 KAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDAR-TVIVFDFGGGTFDV  201 (652)
Q Consensus       137 ~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~-~vlV~D~Gggt~dv  201 (652)
                      +.|.++|..+.    ..+.+|..-.|+..+..-||-.|+..|-|.-+...+ -+++.-.|-|.+..
T Consensus        32 ~~vFGvpG~~~----~~l~dal~~~~i~~V~~rhE~~A~~mAdgYaR~tg~pgv~~~t~GpG~~N~   93 (571)
T PRK07710         32 EVIFGYPGGAV----LPLYDALYDCGIPHILTRHEQGAIHAAEGYARITGNPGVVIATSGPGATNV   93 (571)
T ss_pred             CEEEECCCCCH----HHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf             99998477148----999999986699399338789999999999999799889998167289999


No 227
>PRK03011 butyrate kinase; Provisional
Probab=45.13  E-value=12  Score=15.98  Aligned_cols=44  Identities=23%  Similarity=0.354  Sum_probs=33.7

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHH
Q ss_conf             101466307853056778865410111----11113565310111110
Q gi|255764494|r  328 DIDEVVLVGGMTRMPKIQQSVQDFFNK----SPSKGVNPDEVVAMGAA  371 (652)
Q Consensus       328 ~I~~V~lvGGssriP~v~~~i~~~fg~----~~~~~~npdeaVa~GAA  371 (652)
                      .||.++++||-..-..+.+.|.+..+-    .+...-|-.||.|.||-
T Consensus       296 ~vDaiVFTGGIgen~~l~~~i~~~~~~lapv~v~pg~~Em~ala~gal  343 (356)
T PRK03011        296 KVDAIVLTGGLAYSKRLVDWIKERVSWIAPVVVYPGEDEMEALAEGAL  343 (356)
T ss_pred             CCCEEEECCCHHCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHH
T ss_conf             678899888510499999999986160200797388499999998699


No 228
>PRK06059 lipid-transfer protein; Provisional
Probab=44.84  E-value=13  Score=15.83  Aligned_cols=15  Identities=7%  Similarity=-0.031  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHCCCC
Q ss_conf             553678764201343
Q gi|255764494|r  232 VEHICDTFKKENGID  246 (652)
Q Consensus       232 ~~~~~~~~~~~~~~d  246 (652)
                      +-.+...+-.+|+..
T Consensus       147 ~Al~a~rym~~yG~t  161 (399)
T PRK06059        147 FALLARRRMDLYGAT  161 (399)
T ss_pred             HHHHHHHHHHHHCCC
T ss_conf             999999999997979


No 229
>TIGR01935 NOT-MenG RraA family; InterPro: IPR010203   This entry includes a number of closely related sequences bacteria and plants. The Escherichia coli member of this family has been characterised as a regulator of RNase E  (see IPR004659 from INTERPRO), and its crystal structure has been analysed . E. coli RraA acts as a trans-acting modulator of RNA turnover, binding essential endonuclease RNase E and inhibiting RNA processing . RNase E forms the core of a large RNA-catalysis machine termed the degradosomes. RraA (and RraB) causes remodelling of degradosome composition, which is associated with alterations in RNA decay and global transcript abundance and as such is a bacterial mechanism for the regulation of RNA cleavage .; GO: 0008428 ribonuclease inhibitor activity, 0051252 regulation of RNA metabolic process.
Probab=44.47  E-value=11  Score=16.31  Aligned_cols=19  Identities=26%  Similarity=0.487  Sum_probs=8.2

Q ss_pred             EEEEC--CCCCCHHHHHHHHH
Q ss_conf             46630--78530567788654
Q gi|255764494|r  331 EVVLV--GGMTRMPKIQQSVQ  349 (652)
Q Consensus       331 ~V~lv--GGssriP~v~~~i~  349 (652)
                      .|++|  |||.|-=+|=..|.
T Consensus        60 rVLVVDGgGSlr~ALlGd~lA   80 (155)
T TIGR01935        60 RVLVVDGGGSLRRALLGDNLA   80 (155)
T ss_pred             CEEEEECCCHHHHHCCCCHHH
T ss_conf             279995885010210167567


No 230
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=44.25  E-value=13  Score=15.72  Aligned_cols=44  Identities=16%  Similarity=0.182  Sum_probs=35.1

Q ss_pred             HHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf             1100111101013563110146630785305--6778865410111
Q gi|255764494|r  311 TVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK  354 (652)
Q Consensus       311 ~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~  354 (652)
                      ....++.+|+++++++++|+.|..-|=+|..  |.=-+.|++.||.
T Consensus       280 ~~~~m~~al~~agi~~~~I~yI~aHGTgT~~gD~~E~~ai~~~fg~  325 (414)
T PRK08722        280 GALAMEAAMRDAGITGEQIGYVNAHGTSTPAGDVAEIKGIKRALGE  325 (414)
T ss_pred             HHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf             9999999998749998788669863587877599999999999663


No 231
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=44.21  E-value=9.4  Score=16.82  Aligned_cols=38  Identities=26%  Similarity=0.290  Sum_probs=29.5

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             98537788740257886344211222222221024788
Q gi|255764494|r  139 VITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       139 VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .=.-|...+--|||.+--|+.+|-=.-+-+++||||+-
T Consensus       138 ~~~~p~~LSGGqkQRvaiA~aLa~~P~iLllDEPTs~L  175 (283)
T PRK13640        138 IDSEPANLSGGQKQRVAIAGILAVEPQIIILDESTSML  175 (283)
T ss_pred             HHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             64792229999999999999997199999976874548


No 232
>PRK06289 acetyl-CoA acetyltransferase; Provisional
Probab=43.38  E-value=7.2  Score=17.72  Aligned_cols=16  Identities=19%  Similarity=0.673  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHCCCC
Q ss_conf             6553678764201343
Q gi|255764494|r  231 LVEHICDTFKKENGID  246 (652)
Q Consensus       231 l~~~~~~~~~~~~~~d  246 (652)
                      ++.....+|-.+|+.+
T Consensus       152 ~~a~~A~~y~~~yg~t  167 (408)
T PRK06289        152 MFGKVADEYDRRYGLD  167 (408)
T ss_pred             HHHHHHHHHHHHHCCC
T ss_conf             9999999999996989


No 233
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster.  Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=43.11  E-value=19  Score=14.54  Aligned_cols=78  Identities=21%  Similarity=0.288  Sum_probs=40.6

Q ss_pred             CCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHH-------HHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             9869997599827999579587199999999999999999-------983884733698537788740257886344211
Q gi|255764494|r   89 VPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAE-------SFLGETVSKAVITVPAYFNDAQRQATKDAGRIA  161 (652)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae-------~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~A  161 (652)
                      ++|++....+..-.|.+.. .-+.+++.+.+.++|....+       .|+-.+=..+.||.-...     ..-.+-|+.+
T Consensus         1 F~FK~~~~~GR~HRf~~~~-s~~~~~L~~~V~~rLg~d~~~~~~~~L~Y~DDEgD~VliTsD~DL-----~eaV~~aR~~   74 (86)
T cd06409           1 FAFKFKDPKGRVHRFRLRP-SESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLITSDSDL-----VAAVLVARSA   74 (86)
T ss_pred             CCEEECCCCCCEEEEEECC-CCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECHHH-----HHHHHHHHHC
T ss_conf             9513027899806798657-689999999999984885001676127887489998999403669-----9999999984


Q ss_pred             CCCCCCC-CCCH
Q ss_conf             2222222-2102
Q gi|255764494|r  162 GLDVLRI-INEP  172 (652)
Q Consensus       162 Gl~v~~l-i~Ep  172 (652)
                      |.+.++| |+.|
T Consensus        75 g~~~v~L~vh~p   86 (86)
T cd06409          75 GLKKLDLHLHYP   86 (86)
T ss_pred             CCCEEEEEECCC
T ss_conf             997689983288


No 234
>PRK09605 O-sialoglycoprotein endopeptidase/protein kinase; Reviewed
Probab=42.84  E-value=7.9  Score=17.38  Aligned_cols=132  Identities=21%  Similarity=0.411  Sum_probs=67.2

Q ss_pred             EEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             79987244114543101023146542013322455213447665536787642013430244789999999999885411
Q gi|255764494|r  189 VIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIEL  268 (652)
Q Consensus       189 vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~L  268 (652)
                      ++.+ +-||++.  |+.+.++.+++++..-|.-+ |+-||..     +    +.-++....-+ ...+|   |.+-+.  
T Consensus       127 l~L~-VSGGhTq--ii~~~~g~y~ilGeTlDdA~-GeafDK~-----A----R~lgL~~PGGp-~Ie~l---A~~G~~--  187 (536)
T PRK09605        127 VTLY-VSGGNTQ--VLAYLNGRYRVFGETLDIGI-GNALDKF-----A----RHAGLPHPGGP-KIEKL---AKDGSK--  187 (536)
T ss_pred             CEEE-EECCCEE--EEEECCCEEEEECCCCCHHH-HHHHHHH-----H----HHCCCCCCCCH-HHHHH---HHHCCC--
T ss_conf             5699-9768648--99984873798333143677-8989999-----9----98199999978-99999---971886--


Q ss_pred             CCCCEEEEEECCCCCCCCCCCEEEEE---------EC-CCCCCCCCCCCHHHHH----HCCCCCCHHCCCCCEEEEEEEE
Q ss_conf             55650358630443467887212687---------31-1000012342000011----0011110101356311014663
Q gi|255764494|r  269 SSTSQTEINLPFISANSAGAQHLNMK---------LT-RAQFERLVNHLIQKTV----EPCKKCLQDAGLSPSDIDEVVL  334 (652)
Q Consensus       269 S~~~~~~i~i~~~~~~~~~g~d~~~~---------it-R~~fe~l~~~l~~~~~----~~i~~~L~~a~~~~~~I~~V~l  334 (652)
                            .+.+|...    .|.||+++         +. ....+.+|..+-+.+.    +..++||...+     .+.+++
T Consensus       188 ------~~~lP~~~----kg~DfSFSGLkTa~~~~~~~~~~~~DicaSfQe~i~~~L~e~t~rAl~~~~-----~~~lvv  252 (536)
T PRK09605        188 ------YIELPYVV----KGMDLSFSGLLTAAKEAYDKGEPLEDVCYSLQETAFAMLVEVTERALAHTG-----KDEVLL  252 (536)
T ss_pred             ------CCCCCCCC----CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCEEEE
T ss_conf             ------68588757----897566177889999999859988999999999999999999999999749-----397999


Q ss_pred             CCCCCCHHHHHHHHHHCCCC
Q ss_conf             07853056778865410111
Q gi|255764494|r  335 VGGMTRMPKIQQSVQDFFNK  354 (652)
Q Consensus       335 vGGssriP~v~~~i~~~fg~  354 (652)
                      +||-+.-..+|++++.+...
T Consensus       253 ~GGVaaN~~LR~~l~~~~~~  272 (536)
T PRK09605        253 VGGVAANNRLREMLNVMCEE  272 (536)
T ss_pred             ECCHHHHHHHHHHHHHHHHH
T ss_conf             75788739999999999998


No 235
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=42.76  E-value=11  Score=16.24  Aligned_cols=35  Identities=31%  Similarity=0.332  Sum_probs=27.7

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -|-..+--|||.+--|+.+|.=.-+-+++||||+-
T Consensus       142 ~p~~LSGGqkQRvaiA~aLa~~P~iLilDEPTs~L  176 (281)
T PRK13633        142 APHLLSGGQKQRVAIAGILAMRPECIIFDEPTAML  176 (281)
T ss_pred             CCHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             91008985999999999998599999981873438


No 236
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=42.72  E-value=19  Score=14.50  Aligned_cols=11  Identities=18%  Similarity=0.570  Sum_probs=4.1

Q ss_pred             HHHHHHHHHHH
Q ss_conf             89999999989
Q gi|255764494|r  508 EKMVKDAEMNA  518 (652)
Q Consensus       508 ~~~~~eae~~~  518 (652)
                      ++++++|+..+
T Consensus        41 ~~Ii~~Ae~eA   51 (208)
T PRK01005         41 KRIIEEAQEEA   51 (208)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 237
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=42.66  E-value=10  Score=16.62  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=28.3

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -|...+--|||.+--|+.+|-=.-+=+++||||+-
T Consensus       134 ~p~~LSGGqkqRVaiA~aLa~~P~iliLDEPTagL  168 (275)
T PRK13639        134 PPHHLSGGQKKRVAIAGILAMNPEIMVLDEPTSGL  168 (275)
T ss_pred             CHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             94449999999999988873699899977975548


No 238
>pfam08541 ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal. This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EC:2.3.1.41, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria.
Probab=42.53  E-value=13  Score=15.68  Aligned_cols=35  Identities=37%  Similarity=0.526  Sum_probs=19.2

Q ss_pred             CHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             01013563110146630785305677886541011111
Q gi|255764494|r  319 LQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSP  356 (652)
Q Consensus       319 L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~  356 (652)
                      |+++|++++|||.+++--++-++  + +.+.+.+|.++
T Consensus         1 L~~~g~~~~dId~~i~Hq~~~~~--~-~~i~~~lgi~~   35 (90)
T pfam08541         1 LEKAGLTPDDIDWFVPHQANLRI--I-DAVAKRLGLPP   35 (90)
T ss_pred             CCCCCCCHHHCCEEEECCCCHHH--H-HHHHHHHCCCH
T ss_conf             94404997999999978888899--9-99999819791


No 239
>TIGR01795 CM_mono_cladeE chorismate mutase; InterPro: IPR010951   This entry describes monofunctional (non-fused) chorismate mutases (CM) in the actinobacteridae and alphaproteobacteria..
Probab=42.11  E-value=19  Score=14.43  Aligned_cols=41  Identities=24%  Similarity=0.502  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHC---------CC---CHHHHHHHHHHHHHHHHHHH
Q ss_conf             1344766553678764201---------34---30244789999999999885
Q gi|255764494|r  225 EDFDSCLVEHICDTFKKEN---------GI---DLKQDTLALQRLKEAAEKAK  265 (652)
Q Consensus       225 ~d~D~~l~~~~~~~~~~~~---------~~---d~~~~~~a~~rL~~~~e~aK  265 (652)
                      ++||.+++..+++.|+-..         +.   |+....+...||+.-+..|+
T Consensus        13 DNIDaAvi~~LAERFk~T~~VG~LKA~~~laP~D~~RE~~Qi~RL~~lA~dA~   65 (94)
T TIGR01795        13 DNIDAAVIHLLAERFKCTKQVGVLKAEAGLAPADPAREDRQIARLRRLAIDAK   65 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             13899999999878776678755654058779871138999999999875028


No 240
>PTZ00340 O-sialoglycoprotein endopeptidase; Provisional
Probab=41.74  E-value=20  Score=14.39  Aligned_cols=38  Identities=26%  Similarity=0.501  Sum_probs=27.3

Q ss_pred             HHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf             1001111010135631101466307853056778865410111
Q gi|255764494|r  312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK  354 (652)
Q Consensus       312 ~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~  354 (652)
                      .+.++++++..+     +..++++||-+.-..+|+.++++...
T Consensus       256 ~~k~~~a~~~~~-----~~~lvv~GGVAaN~~LR~~l~~~~~~  293 (348)
T PTZ00340        256 VEVTERAMSHCG-----SNEVLIVGGVGCNLRLQEMMQQMAKE  293 (348)
T ss_pred             HHHHHHHHHHHC-----CCEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             999999999878-----89599956577769999999999998


No 241
>PRK08768 consensus
Probab=41.66  E-value=19  Score=14.43  Aligned_cols=46  Identities=15%  Similarity=0.213  Sum_probs=36.2

Q ss_pred             HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf             001100111101013563110146630785305--6778865410111
Q gi|255764494|r  309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNK  354 (652)
Q Consensus       309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~  354 (652)
                      +.....++.+|.++++.+++|+.|..-|=+|..  |.=-..|.+.||.
T Consensus       277 ~~~~~~~~~al~~a~~~~~~i~yi~aHgtgT~~~D~~E~~ai~~~fg~  324 (411)
T PRK08768        277 EGAARSMAAAMRDAKLNPEQIGYLNAHGTSTPLGDLAETMAMKRALGD  324 (411)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf             999999999999769893102489967566755399999999998567


No 242
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Probab=41.44  E-value=11  Score=16.26  Aligned_cols=55  Identities=16%  Similarity=0.085  Sum_probs=29.7

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--ECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             871999999999999999999838847336985--377887402578863442112222
Q gi|255764494|r  109 QYSPSQISAIVLQKMKETAESFLGETVSKAVIT--VPAYFNDAQRQATKDAGRIAGLDV  165 (652)
Q Consensus       109 ~~~peei~a~iL~~lk~~ae~~l~~~v~~~Vit--VP~~f~~~qR~a~~~Aa~~AGl~v  165 (652)
                      ..++.++.+..++...+.+.- -...|+.+++.  .|..|......+ +.++..+|+..
T Consensus        19 ~~~~~dL~~~a~~~al~~agl-~~~~ID~vi~G~~~~g~~~~~~~~a-~~~a~~~Gl~~   75 (389)
T PRK06064         19 DVSLRDLAVEAGLEALEDAGI-DGKDIDAMYVGNMSGGRFVGQEHIA-ALIADYAGLAP   75 (389)
T ss_pred             CCCHHHHHHHHHHHHHHHHCC-CHHHCCEEEEEECCCCCCCCCCCHH-HHHHHHCCCCC
T ss_conf             979999999999999998094-9899599999812766434324099-99999759999


No 243
>pfam05262 Borrelia_P83 Borrelia P83/100 protein. This family consists of several Borrelia P83/P100 antigen proteins.
Probab=41.34  E-value=20  Score=14.35  Aligned_cols=66  Identities=14%  Similarity=0.256  Sum_probs=29.0

Q ss_pred             EEEECCCCCC---HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC-------CCCCHHEECCCCCCCCC
Q ss_conf             4663078530---567788654101111111356531011111000223467-------52210000235665322
Q gi|255764494|r  331 EVVLVGGMTR---MPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG-------DVKDLLLLDVTPLSLGI  396 (652)
Q Consensus       331 ~V~lvGGssr---iP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~-------~~~~~~~~dv~p~slgi  396 (652)
                      .|+.+|-.|+   |--||+.|..|+-.....+.-.-+..|.=-.+|-|+..+       ...+..+-.++|.++|+
T Consensus        68 DVf~Ig~~s~~dhI~nlrrIlagYl~~~fgY~~~~Ae~lA~~itiYNAvyR~Dl~y~~~~Y~~~v~k~lt~~~~Gl  143 (489)
T pfam05262        68 DIFIIGSKAEVDHILNLRRILAGYLMAAYGYERSDAETIAKFITIYNAVYRGDLDYFKEFYKEVVTKSLTKENAGL  143 (489)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHCCH
T ss_conf             5698626566206888999999999986397733289999999998787726567787777888885158121430


No 244
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota.  The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed.  The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways.  Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO.  Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=41.31  E-value=11  Score=16.34  Aligned_cols=36  Identities=25%  Similarity=0.265  Sum_probs=28.3

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|..++--|||.+.-|+.++.=.-+-|++|||++-
T Consensus       122 ~~~~~LSGGqkQrv~iA~aL~~~P~illLDEPt~gL  157 (205)
T cd03226         122 RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL  157 (205)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             891128999999999999997599999997997658


No 245
>KOG2314 consensus
Probab=41.27  E-value=20  Score=14.34  Aligned_cols=26  Identities=19%  Similarity=0.433  Sum_probs=17.8

Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             02998999999999999999872489
Q gi|255764494|r  550 DKIAEAEQKSIRESIDALRTLLNDAD  575 (652)
Q Consensus       550 ~klse~ek~~i~~~l~e~e~wl~~~~  575 (652)
                      ..+|++++++|++.|.+.....++.|
T Consensus       596 s~LS~e~~KkIkKnLKky~a~FeeqD  621 (698)
T KOG2314         596 SLLSEEKQKKIKKNLKKYSAQFEEQD  621 (698)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             41478899999988999998875531


No 246
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=41.06  E-value=6.5  Score=18.06  Aligned_cols=76  Identities=26%  Similarity=0.387  Sum_probs=44.1

Q ss_pred             CEEEEEEECCCEEEEEEEEECCC---------------EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH---
Q ss_conf             50799872441145431010231---------------465420133224552134476655367876420134302---
Q gi|255764494|r  187 RTVIVFDFGGGTFDVSLLEMGDG---------------VFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLK---  248 (652)
Q Consensus       187 ~~vlV~D~Gggt~dvsi~~~~~~---------------~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~---  248 (652)
                      +.+-+==|||-|||+|+--....               .++.|. .|-+-||=+..-.-+++.|++++ -++|+|+-   
T Consensus        41 G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLl-RGQNlvGYrhyaDDvVe~Fv~ka-~~nGidvfRiF  118 (472)
T COG5016          41 GYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLL-RGQNLVGYRHYADDVVEKFVEKA-AENGIDVFRIF  118 (472)
T ss_pred             CEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHH-CCCCCCCCCCCCHHHHHHHHHHH-HHCCCCEEEEC
T ss_conf             80578741770099999986479899999999867885889987-03751365678458999999999-86487579721


Q ss_pred             ---HHHHHHHHHHHHHHHHHHH
Q ss_conf             ---4478999999999988541
Q gi|255764494|r  249 ---QDTLALQRLKEAAEKAKIE  267 (652)
Q Consensus       249 ---~~~~a~~rL~~~~e~aK~~  267 (652)
                         .|.|.   |..+++.+|+.
T Consensus       119 DAlND~RN---l~~ai~a~kk~  137 (472)
T COG5016         119 DALNDVRN---LKTAIKAAKKH  137 (472)
T ss_pred             HHCCCHHH---HHHHHHHHHHC
T ss_conf             11046467---99999999961


No 247
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=41.01  E-value=12  Score=15.91  Aligned_cols=36  Identities=28%  Similarity=0.298  Sum_probs=27.5

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      --|...+--|||.+--|..+|-=.-+=+++||||+-
T Consensus       172 r~p~~LSGGqkQRVaIA~aLa~~P~iLilDEPTagL  207 (320)
T PRK13631        172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGL  207 (320)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             782209999999999999972399999975875559


No 248
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=40.98  E-value=20  Score=14.31  Aligned_cols=64  Identities=22%  Similarity=0.376  Sum_probs=35.4

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCCC--CCCHHHHHHHHH---HHCCCCCCCCCCCH
Q ss_conf             58719999999999999999998388473369853--7788--740257886344---21122222222102
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAYF--NDAQRQATKDAG---RIAGLDVLRIINEP  172 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~f--~~~qR~a~~~Aa---~~AGl~v~~li~Ep  172 (652)
                      +.++|++|.+..++.+.+.+. .-...|+++++.+  |+..  ....|++.+.|.   ...|+.+-+..-..
T Consensus        22 ~~~~~~~L~a~~i~~~l~r~~-i~~~~Id~vi~G~v~~~g~~~~n~aR~~al~aGlp~~vp~~tVnr~CaSG   92 (401)
T PRK08131         22 ASVRPDDLAATVIRRLVEKSG-FAGDDIEDVILGCTNQAGEDSRNVARNALLLAGLPVTVPGQTVNRLCASG   92 (401)
T ss_pred             CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCHHHHH
T ss_conf             999889999999999999729-89899898999814665654466999999966999888716875253578


No 249
>TIGR02845 spore_V_AD stage V sporulation protein AD; InterPro: IPR010894   This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation ..
Probab=40.91  E-value=11  Score=16.45  Aligned_cols=44  Identities=16%  Similarity=0.399  Sum_probs=26.6

Q ss_pred             HHCCCCCCHHCCCCCEEEEEEEECCCCCCH--HHHHHHHHHCCCCCC
Q ss_conf             100111101013563110146630785305--677886541011111
Q gi|255764494|r  312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTRM--PKIQQSVQDFFNKSP  356 (652)
Q Consensus       312 ~~~i~~~L~~a~~~~~~I~~V~lvGGssri--P~v~~~i~~~fg~~~  356 (652)
                      .+.|+.=|++.+.+++|-| +|++|==+|+  +.++++|++.+|..+
T Consensus       207 aDTI~~Hf~dtg~~~~DYD-LIvTGDL~rvG~~I~~~LL~e~yg~~~  252 (331)
T TIGR02845       207 ADTIEAHFKDTGRSVDDYD-LIVTGDLARVGSEILRKLLKEEYGYDV  252 (331)
T ss_pred             HHHHHHHHHHCCCCCCEEE-EEEECCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999987078804013-678733002148999999888608750


No 250
>PRK10908 cell division protein FtsE; Provisional
Probab=40.88  E-value=13  Score=15.64  Aligned_cols=37  Identities=16%  Similarity=0.233  Sum_probs=28.7

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8537788740257886344211222222221024788
Q gi|255764494|r  140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -..|...+.-|||.+--|..++.=.-+-|++||||+-
T Consensus       132 ~~~p~~LSGGq~QRvaiAraL~~~P~iLllDEPt~~L  168 (222)
T PRK10908        132 KNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNL  168 (222)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             4887668968999999999997699999990987667


No 251
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=40.75  E-value=13  Score=15.81  Aligned_cols=36  Identities=25%  Similarity=0.284  Sum_probs=27.9

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|...+--|||.+--|+.+|-=.-+-+++||||+-
T Consensus       157 ~~p~~LSGGqkqRVaIA~~La~~P~iLlLDEPTagL  192 (304)
T PRK13651        157 KSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGL  192 (304)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             895428999999999999884599999972986658


No 252
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=40.74  E-value=11  Score=16.42  Aligned_cols=36  Identities=22%  Similarity=0.304  Sum_probs=27.8

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      --|...+.-|||.+--|..++.=.-+=|++|||++-
T Consensus       125 ~~~~~LSGGq~QRv~iAraL~~~P~vLllDEPts~L  160 (233)
T PRK10771        125 RLPGELSGGQRQRVALARCLVREQPILLLDEPFSAL  160 (233)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             894559999999999999985599999992877557


No 253
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors.  The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan.  The pigment precursors are encoded by the white, brown, and scarlet genes, respectively.  Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan.  However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes.  Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in 
Probab=40.59  E-value=13  Score=15.89  Aligned_cols=35  Identities=17%  Similarity=0.156  Sum_probs=27.7

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -|..++.-|||.+--|..++.=..+-|++|||++-
T Consensus       140 ~~~~LSGGqrqRv~iA~aL~~~P~illLDEPTsgL  174 (226)
T cd03234         140 LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL  174 (226)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             73328999999999999996599989995886568


No 254
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.40  E-value=11  Score=16.21  Aligned_cols=36  Identities=25%  Similarity=0.256  Sum_probs=28.3

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|...+--|||.+--|..+|-=.-+-+++|||++-
T Consensus       136 ~~p~~LSGGQrQRvaIAraL~~~P~iLilDEPTs~L  171 (279)
T PRK13635        136 REPHRLSGGQKQRVAIAGVLALQPDILILDEATSML  171 (279)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             793439999999999999997099989973874548


No 255
>PRK06157 acetyl-CoA acetyltransferase; Validated
Probab=40.39  E-value=8.4  Score=17.19  Aligned_cols=40  Identities=8%  Similarity=0.282  Sum_probs=17.5

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             3678764201343024478999999999988541155650358
Q gi|255764494|r  234 HICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEI  276 (652)
Q Consensus       234 ~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i  276 (652)
                      .+...+-.+|+.+..+-.+++..+   +.+...-=+.|+.+.+
T Consensus       150 ~~a~~ym~~yG~t~e~l~~~~A~V---Avk~r~nA~~NP~A~~  189 (400)
T PRK06157        150 QLASAYRAKHGVSREDLKRAMAHV---SVKSHANGARNPKAHL  189 (400)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHH---HHHHHHHHHHCCCCCC
T ss_conf             999999999797987899999999---9999999860974125


No 256
>PRK13769 histidinol dehydrogenase; Provisional
Probab=40.06  E-value=21  Score=14.21  Aligned_cols=45  Identities=13%  Similarity=0.194  Sum_probs=30.7

Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHC
Q ss_conf             47336985377887402578863442112222222210247-8888603
Q gi|255764494|r  134 TVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA-AALAYGL  181 (652)
Q Consensus       134 ~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA-Aal~Y~~  181 (652)
                      -|.++|+..|+.   .--.+++-||.++|.+.+--+--.-| ||++||.
T Consensus       120 GV~~Ivv~tPP~---~~~~~il~aA~~~Gv~eiy~iGGaQAIAa~A~gt  165 (368)
T PRK13769        120 GVEEIYVVTPPR---GVTGELLAVAKELGVKGVLAIGGPHGLAYAVFHM  165 (368)
T ss_pred             CCCEEEEECCCC---CCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCC
T ss_conf             998489967998---9888999999983987652053899999885377


No 257
>TIGR01499 folC FolC bifunctional protein; InterPro: IPR001645   Folylpolyglutamate synthase 6.3.2.17 from EC (FPGS) is responsible for the addition of a polyglutamate tail to folate and folate derivatives, is an ATP-dependent enzyme isolated from eukaryotic and bacterial sources, where it plays a key role in the retention of the intracellular folate pool Its sequence is moderately conserved between prokaryotes (gene folC) and eukaryotes.   FPGS belongs to a protein family that contains a number of related peptidoglycan synthetases (Mur) 6.3.2. from EC (see ).   A crystal structure of the MgATP complex of the enzyme from Lactobacillus casei reveals that folylpolyglutamate synthetase is a modular protein consisting of two domains, one with a typical mononucleotide-binding fold and the other strikingly similar to the folate-binding enzyme dihydrofolate reductase. The active site of the enzyme is located in a large interdomain cleft adjacent to an ATP-binding P-loop motif. Opposite this site, in the C domain, a cavity likely to be the folate binding site has been identified, and inspection of this cavity and the surrounding protein structure suggests that the glutamate tail of the substrate may project into the active site. A further feature of the structure is a well defined Omega loop, which contributes both to the active site and to interdomain interactions .; GO: 0004326 tetrahydrofolylpolyglutamate synthase activity, 0005524 ATP binding, 0009396 folic acid and derivative biosynthetic process.
Probab=39.99  E-value=21  Score=14.20  Aligned_cols=136  Identities=22%  Similarity=0.345  Sum_probs=71.8

Q ss_pred             EEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             79995795871999999999999999999838847336985377887402578863442112222222210247888860
Q gi|255764494|r  101 AWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG  180 (652)
Q Consensus       101 ~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~  180 (652)
                      -+|.++|+.++.+++ +.+..+++...++....    -...=|.||            ++           -|+.|+.| 
T Consensus        64 ERI~~nG~~i~d~~~-~~~~~~~~~~~~~~~~~----~~~~~~t~F------------E~-----------~T~~Af~~-  114 (460)
T TIGR01499        64 ERIRVNGEPISDEEL-AQAFEQVRPILKKLSQE----TEYSQPTFF------------EL-----------LTLLAFLY-  114 (460)
T ss_pred             EEEEECCEECCHHHH-HHHHHHHHHHHHHHHCC----CCCCCCCHH------------HH-----------HHHHHHHH-
T ss_conf             347898857688999-99999999987533101----358777789------------99-----------99999999-


Q ss_pred             CCCC-CCCEEEEEEEC-CCEEEEEEEEECCCEEEEECCCC---CCCCCCHHHHHHHHHHHHHHHHHHCCCCHH--HHHHH
Q ss_conf             3445-65507998724-41145431010231465420133---224552134476655367876420134302--44789
Q gi|255764494|r  181 LDKK-DARTVIVFDFG-GGTFDVSLLEMGDGVFEVKATNG---DTFLGGEDFDSCLVEHICDTFKKENGIDLK--QDTLA  253 (652)
Q Consensus       181 ~~~~-~~~~vlV~D~G-ggt~dvsi~~~~~~~~~vl~~~g---d~~lGG~d~D~~l~~~~~~~~~~~~~~d~~--~~~~a  253 (652)
                       +.+ .+--++|+=.| ||-+|.|=| +.+..+.++.+-|   -..|| +.+-. |+..=+.-|+..-.+=..  ..+.+
T Consensus       115 -F~~~~~vd~av~EVGlGGrlDaTNv-~~~p~~~~iT~ig~DH~~~LG-~t~~~-IA~eKAGI~k~g~P~v~~~~~~~ea  190 (460)
T TIGR01499       115 -FAQLAQVDVAVLEVGLGGRLDATNV-VEKPLVSVITSIGLDHTEILG-DTLEE-IAWEKAGIIKEGVPIVTGEVQEPEA  190 (460)
T ss_pred             -HHHHCCCCEEEEEECCCCCCCCCCC-CCCCEEEEECCCCHHHHHHHC-CCHHH-HHHHHHHHHCCCCCEEEECCCCHHH
T ss_conf             -9985088289998737654455441-138637997277768886505-33799-9997457621676568714886689


Q ss_pred             HHHHHHHHHHHH-HHCC
Q ss_conf             999999999885-4115
Q gi|255764494|r  254 LQRLKEAAEKAK-IELS  269 (652)
Q Consensus       254 ~~rL~~~~e~aK-~~LS  269 (652)
                      +.-+.+.|++.. -.|.
T Consensus       191 ~~v~~~~A~~~~~~~l~  207 (460)
T TIGR01499       191 LEVLKKKAEEKGAAPLQ  207 (460)
T ss_pred             HHHHHHHHHHHCCCEEE
T ss_conf             99999999971686046


No 258
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=39.98  E-value=20  Score=14.40  Aligned_cols=50  Identities=32%  Similarity=0.428  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             999999999998388473369853778874025788634421122222222102478
Q gi|255764494|r  119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       119 iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      ++..+++..+.+   .++-.||-||+.|   ...|+.+|+. ||++.+-.|.|-.-.
T Consensus        53 Vf~tV~eAv~~~---~~d~svIfVPp~~---a~dAi~EAi~-agI~~iV~ITEgiP~  102 (289)
T PRK05678         53 VFNTVKEAVEAT---GATASVIYVPPPF---AADAILEAID-AGIDLIVCITEGIPV  102 (289)
T ss_pred             CCCCHHHHHHHC---CCCEEEEEECHHH---HHHHHHHHHH-CCCCEEEEECCCCCH
T ss_conf             306599998612---8886999707899---9999999986-799889994389978


No 259
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=39.89  E-value=11  Score=16.29  Aligned_cols=36  Identities=22%  Similarity=0.268  Sum_probs=28.1

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      ..|..++.-|||.+--|..++.=.-+=|++|||++-
T Consensus       141 ~~~~~LSGGqkQRvaiAraL~~~P~illlDEPTs~L  176 (233)
T PRK11629        141 HRPSELSGGERQRVAIARALVNNPRLVLADEPTGNL  176 (233)
T ss_pred             CCCCEECHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             984663899999999999996599999992888879


No 260
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=39.76  E-value=21  Score=14.18  Aligned_cols=17  Identities=18%  Similarity=0.370  Sum_probs=10.1

Q ss_pred             CCCCCHHHHHHHHHHHH
Q ss_conf             00112456689999999
Q gi|255764494|r  499 SGGLSSEDIEKMVKDAE  515 (652)
Q Consensus       499 ~~~Ls~eei~~~~~eae  515 (652)
                      ...|+++|++.+.+..-
T Consensus       622 ~rTLtdeev~~~~~~~~  638 (650)
T COG0072         622 ERTLTDEEVNALVNKIV  638 (650)
T ss_pred             CCCCCHHHHHHHHHHHH
T ss_conf             88888799999999999


No 261
>TIGR01175 pilM type IV pilus assembly protein PilM; InterPro: IPR005883    The opportunistic pathogen Pseudomonas aeruginosa produces type 4 fimbriae which promote adhesion to epithelial cells and are associated with a form of surface translocation called twitching motility. Four genes, pilM-P, encode the necessary proteins with predicted sizes of 37.9, 22.2, 22.8 and 19.0 kDa, respectively and appear to form an operon. This protein is required for the assembly of the type IV fimbria in P. aeruginosa and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.  ; GO: 0006461 protein complex assembly.
Probab=39.69  E-value=21  Score=14.17  Aligned_cols=190  Identities=22%  Similarity=0.337  Sum_probs=96.8

Q ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHH--C-----C---------CCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCC
Q ss_conf             863442112222222210247888860--3-----4---------45655079987244114543101023146542013
Q gi|255764494|r  154 TKDAGRIAGLDVLRIINEPTAAALAYG--L-----D---------KKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATN  217 (652)
Q Consensus       154 ~~~Aa~~AGl~v~~li~EptAAal~Y~--~-----~---------~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~  217 (652)
                      -.++.+.+|+...-+--+..|..-.|.  +     .         ......++++|+|.....++++.-....     ..
T Consensus       150 ~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-----~~  224 (381)
T TIGR01175       150 RLDALKLAGLEPKVLDVESFALLRALRGNLLGEQLGSGTLRLTNYTEAGEDALLVDIGATSSTLNLLHGGRPL-----FT  224 (381)
T ss_pred             HHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCE-----EE
T ss_conf             8888876176301002457788876620134555521011345532123213454315430000112066310-----00


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             32245521344766553678764201343024478999999999988541155650358630443467887212687311
Q gi|255764494|r  218 GDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTR  297 (652)
Q Consensus       218 gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR  297 (652)
                      .+..+|++++...+...        ++.++..           +..+|.-.+... ++..-..   +     -+++.+++
T Consensus       225 ~~~~~g~~~~~~~~~~~--------~~~~~~~-----------~~~~~~g~~~~~-~~~~~~~---~-----~~~~~~~~  276 (381)
T TIGR01175       225 REVPLGGRQLTSELSRA--------YGLPPEE-----------AGEAKLGYTTPT-TPFDDEE---D-----LLNFDLSQ  276 (381)
T ss_pred             ECCCCCHHHHHHHHHHH--------HCCCHHH-----------HHHHHHCCCCCC-CCCCCHH---H-----HHHHCCCC
T ss_conf             01135503556678876--------2687111-----------103340220013-4542145---6-----65300013


Q ss_pred             CCCC-----CCCCCCHHHHHHCCCCCCHH--CCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH-
Q ss_conf             0000-----12342000011001111010--135631101466307853056778865410111111135653101111-
Q gi|255764494|r  298 AQFE-----RLVNHLIQKTVEPCKKCLQD--AGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMG-  369 (652)
Q Consensus       298 ~~fe-----~l~~~l~~~~~~~i~~~L~~--a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~G-  369 (652)
                      ..+-     +...++...+..-+.+.+.-  +.-....++.+.+.||+..+..+...+.+.++.. ....||-..++.+ 
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gg~~~~~~l~~~~~~~~~~~-~~~~~p~~~~~~~~  355 (381)
T TIGR01175       277 GGLPPLYDPEVLRPFLGELVDELRRSLQFFLAQSGDNELDGLLLAGGGAGLSGLDAALGQRLGLP-TEVANPFALLALDQ  355 (381)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCC-CEECCHHHHHHHCH
T ss_conf             56543211578888888999999988887652132001103576067520244588877541443-00002156653010


Q ss_pred             HHHCCCCC
Q ss_conf             10002234
Q gi|255764494|r  370 AAIQAGVL  377 (652)
Q Consensus       370 AA~~a~~l  377 (652)
                      +......+
T Consensus       356 ~~~~~~~~  363 (381)
T TIGR01175       356 AGVDAGFL  363 (381)
T ss_pred             HHHCCCCC
T ss_conf             01002320


No 262
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=39.59  E-value=21  Score=14.26  Aligned_cols=54  Identities=28%  Similarity=0.288  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHCCC-CCEEEEEECC-CCCCCHHHHHHHHHHHCCCCC-CCCCCCHHHHH
Q ss_conf             99999999983884-7336985377-887402578863442112222-22221024788
Q gi|255764494|r  121 QKMKETAESFLGET-VSKAVITVPA-YFNDAQRQATKDAGRIAGLDV-LRIINEPTAAA  176 (652)
Q Consensus       121 ~~lk~~ae~~l~~~-v~~~VitVP~-~f~~~qR~a~~~Aa~~AGl~v-~~li~EptAAa  176 (652)
                      +.++..|...+..- +. .-...|+ ..+-.|||.+.-|-.++. +. +=+++|||||-
T Consensus       120 ~~m~~~A~~~l~~lg~~-~~~~~~v~~LsiaqrQ~VeIArAl~~-~arllIlDEPTaaL  176 (500)
T COG1129         120 KAMRRRARELLARLGLD-IDPDTLVGDLSIAQRQMVEIARALSF-DARVLILDEPTAAL  176 (500)
T ss_pred             HHHHHHHHHHHHHCCCC-CCCCCHHHHCCHHHHHHHHHHHHHHC-CCCEEEECCCCCCC
T ss_conf             99999999999973898-87000033089999999999998626-99899973987679


No 263
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos).  The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis.  In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains.  However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=39.37  E-value=13  Score=15.87  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=26.4

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      ..|...+--|||.+.-|..++.=.-+-+++|||++-
T Consensus       100 ~~~~~LSGG~~Qrv~lAral~~~p~llllDEPT~gL  135 (182)
T cd03215         100 ALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGV  135 (182)
T ss_pred             HCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             185579989999999999997199999986875458


No 264
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=38.95  E-value=19  Score=14.46  Aligned_cols=37  Identities=32%  Similarity=0.252  Sum_probs=30.4

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8537788740257886344211222222221024788
Q gi|255764494|r  140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      =..|--++--|||.+.-|-.+|+=.-+-+-+|||-|-
T Consensus       152 ~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTAL  188 (534)
T COG4172         152 DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTAL  188 (534)
T ss_pred             HHCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHH
T ss_conf             4387234852365899999973899868616985220


No 265
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=38.84  E-value=22  Score=14.08  Aligned_cols=53  Identities=26%  Similarity=0.377  Sum_probs=30.8

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEEEC-CCEEEEEEEEECCCEEEEECCCCCC---CCCCHHHHH
Q ss_conf             247888860344565507998724-4114543101023146542013322---455213447
Q gi|255764494|r  172 PTAAALAYGLDKKDARTVIVFDFG-GGTFDVSLLEMGDGVFEVKATNGDT---FLGGEDFDS  229 (652)
Q Consensus       172 ptAAal~Y~~~~~~~~~vlV~D~G-ggt~dvsi~~~~~~~~~vl~~~gd~---~lGG~d~D~  229 (652)
                      -||+|+.|  +....--++|+-.| ||.+|.+=+ +. ..+.|+.+-|-.   .|| +.+..
T Consensus       127 ~T~~A~~~--F~~~~vD~aVlEvGLGGrlDATNv-i~-~~vsvIT~IglDH~~~LG-~Tle~  183 (416)
T PRK10846        127 GTLSALWL--FKQAQLDVVILEVGLGGRLDATNI-VD-ADVAVITSIALDHTDWLG-PDRES  183 (416)
T ss_pred             HHHHHHHH--HHHCCCCEEEEEECCCEEEHHHCC-CC-CCEEEECCCCHHHHHHHC-CCHHH
T ss_conf             99999999--985699989998357513432138-88-877998870476420017-99999


No 266
>pfam00480 ROK ROK family.
Probab=38.81  E-value=22  Score=14.08  Aligned_cols=35  Identities=37%  Similarity=0.428  Sum_probs=22.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHCC--CCCCCEEEEEEECCC
Q ss_conf             222222221024788886034--456550799872441
Q gi|255764494|r  162 GLDVLRIINEPTAAALAYGLD--KKDARTVIVFDFGGG  197 (652)
Q Consensus       162 Gl~v~~li~EptAAal~Y~~~--~~~~~~vlV~D~Ggg  197 (652)
                      |++| .+.|+..|||++-.+.  .+..++++++-+|-|
T Consensus        94 ~~Pv-~v~NDa~aaalaE~~~G~~~~~~~~~~i~lgtG  130 (181)
T pfam00480        94 NVPV-YIENDANAAALGEKVFGASKDVSNVIYVTIGTG  130 (181)
T ss_pred             CCCE-EECCHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf             9980-432226499999998298755673899996774


No 267
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.75  E-value=14  Score=15.41  Aligned_cols=36  Identities=25%  Similarity=0.269  Sum_probs=27.9

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      --|-..+.-|||.+--|+.+|.=..+-+++||||+-
T Consensus       140 r~p~~LSGGqkqRvaiA~aLa~~P~vLlLDEPTs~L  175 (288)
T PRK13643        140 KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGL  175 (288)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             797639999999999999997499999995885558


No 268
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.59  E-value=14  Score=15.61  Aligned_cols=36  Identities=19%  Similarity=0.209  Sum_probs=27.4

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      --|...+.-|||.+--|..+|.=.-+-+++||||+-
T Consensus       137 ~~~~~LSGGqkqRvaIA~aLa~~P~iLlLDEPTagL  172 (285)
T PRK13636        137 KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL  172 (285)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             880019999999999999997499899997875559


No 269
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters.  This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc.  The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor.  The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri.  Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=38.56  E-value=12  Score=16.09  Aligned_cols=35  Identities=20%  Similarity=0.136  Sum_probs=26.7

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -|..++.-|||.+.-|..++.=.-+=|++|||++-
T Consensus       129 ~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPtsgL  163 (213)
T cd03235         129 QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGV  163 (213)
T ss_pred             CHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             84657989999999999996699999981886678


No 270
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III; InterPro: IPR004655   Beta-ketoacyl-acyl carrier protein synthase III (FabH), in general, initiates elongation in type II fatty acid synthase systems found in bacteria and plants. It is responsible for producing the multitude of fatty acid structures found in bacterial membranes . The two members of this subfamily from Bacillus subtilis differ from each other, and from FabH from Escherichia coli, in acyl group specificity. Active site residues include Cys112, His244 and Asn274 of Escherichia coli FabH. Cys-112 is the site of acyl group attachment. ; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process.
Probab=38.14  E-value=22  Score=14.00  Aligned_cols=83  Identities=27%  Similarity=0.337  Sum_probs=51.5

Q ss_pred             CCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC---C----CCC-CCCCCCHHHHHHHHC
Q ss_conf             12342000011001111010135631101466307853056778865410111---1----111-356531011111000
Q gi|255764494|r  302 RLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK---S----PSK-GVNPDEVVAMGAAIQ  373 (652)
Q Consensus       302 ~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~---~----~~~-~~npdeaVa~GAA~~  373 (652)
                      ++.+-=+.+..+.++++|..++++++|||-.+--=--.||   -+.+.+.|.-   .    +.+ .=|- .|.+.+.|+-
T Consensus       222 evFk~Av~~m~~~~~~~l~~a~l~~~DiD~lvPHQAN~RI---i~a~ak~L~~~~~~Vv~Tv~khyGNT-SAASiP~AL~  297 (329)
T TIGR00747       222 EVFKHAVRKMLKVVEETLEAAGLSKEDIDWLVPHQANIRI---IEALAKRLELKESKVVKTVHKHYGNT-SAASIPIALD  297 (329)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCHHHCCEECCCCHHHHH---HHHHHHHHCCCCCCEEEEEECCCCCC-HHHHHHHHHH
T ss_conf             2588999999999999999718783046155554111689---99999970898031686320013463-0434667899


Q ss_pred             CCCCCCCCC--CHHEEC
Q ss_conf             223467522--100002
Q gi|255764494|r  374 AGVLQGDVK--DLLLLD  388 (652)
Q Consensus       374 a~~ls~~~~--~~~~~d  388 (652)
                      ..+-.+++|  |++|.+
T Consensus       298 E~~~~G~iK~Gd~~LL~  314 (329)
T TIGR00747       298 ELLETGRIKKGDLLLLV  314 (329)
T ss_pred             HHHHCCCCCCCCEEEEE
T ss_conf             98741777724488876


No 271
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.07  E-value=15  Score=15.26  Aligned_cols=36  Identities=19%  Similarity=0.191  Sum_probs=26.6

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|...+--|||.+--|..+|-=.-+=+++||||+-
T Consensus       141 ~~p~~LSGGqkqRVaiA~aLa~~P~iLilDEPTagL  176 (286)
T PRK13646        141 QSPFQMSGGQMRKIAIVSILAMNPDIIVVDEPTAGL  176 (286)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             694329999999999999985198999983874438


No 272
>KOG1939 consensus
Probab=37.99  E-value=9.4  Score=16.83  Aligned_cols=20  Identities=45%  Similarity=0.707  Sum_probs=15.4

Q ss_pred             CCCEEEEEEECCCEEEEEEE
Q ss_conf             65507998724411454310
Q gi|255764494|r  185 DARTVIVFDFGGGTFDVSLL  204 (652)
Q Consensus       185 ~~~~vlV~D~Gggt~dvsi~  204 (652)
                      +..-+.=|||||.++|||-.
T Consensus       303 ~~~P~IGFDMGGTSTDVsRY  322 (1247)
T KOG1939         303 DKKPLIGFDMGGTSTDVSRY  322 (1247)
T ss_pred             CCCCEEEECCCCCCCCEECC
T ss_conf             67834665478874420024


No 273
>PRK06365 acetyl-CoA acetyltransferase; Provisional
Probab=37.89  E-value=16  Score=15.12  Aligned_cols=39  Identities=8%  Similarity=0.024  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             6553678764201343024478999999999988541155650358
Q gi|255764494|r  231 LVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEI  276 (652)
Q Consensus       231 l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i  276 (652)
                      ++-.+..++-.+|+....    .   |-.-+.+...-=..|+.+.+
T Consensus       146 ~~Al~a~rym~~yG~t~e----~---lA~Vavk~r~~A~~NP~A~~  184 (415)
T PRK06365        146 YYAMMAVRHMYEFGTTVE----Q---MAKVSVKNHGNAIHNPYAQS  184 (415)
T ss_pred             HHHHHHHHHHHHHCCCHH----H---HHHHHHHHHHHHCCCHHHHC
T ss_conf             999999999998698899----9---99999998775525937648


No 274
>PRK07855 lipid-transfer protein; Provisional
Probab=37.88  E-value=19  Score=14.58  Aligned_cols=15  Identities=20%  Similarity=0.288  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHCCCCH
Q ss_conf             536787642013430
Q gi|255764494|r  233 EHICDTFKKENGIDL  247 (652)
Q Consensus       233 ~~~~~~~~~~~~~d~  247 (652)
                      -.+..++-.+|+.+.
T Consensus       151 Al~a~rym~~yG~t~  165 (386)
T PRK07855        151 AMIARRYMHEYGATS  165 (386)
T ss_pred             HHHHHHHHHHHCCCH
T ss_conf             999999999979599


No 275
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE).  They are clustered together phylogenetically.  MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all.  An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport.  The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=37.84  E-value=15  Score=15.29  Aligned_cols=36  Identities=22%  Similarity=0.256  Sum_probs=26.9

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|..++.-|||.+--|..++.=.-+-|++|||++.
T Consensus       136 ~~~~~LSGG~kQRv~iAraL~~~P~llllDEPTs~L  171 (218)
T cd03255         136 HYPSELSGGQQQRVAIARALANDPKIILADEPTGNL  171 (218)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             887638999999999999985599999981888768


No 276
>COG5418 Predicted secreted protein [Function unknown]
Probab=37.75  E-value=17  Score=14.80  Aligned_cols=72  Identities=21%  Similarity=0.397  Sum_probs=38.2

Q ss_pred             HHHHHHHHCCCCC-EEEE-EECCCCCCCCCCCEEEEEECCCCCCCCC-CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECC
Q ss_conf             9998854115565-0358-6304434678872126873110000123-42000011001111010135631101466307
Q gi|255764494|r  260 AAEKAKIELSSTS-QTEI-NLPFISANSAGAQHLNMKLTRAQFERLV-NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVG  336 (652)
Q Consensus       260 ~~e~aK~~LS~~~-~~~i-~i~~~~~~~~~g~d~~~~itR~~fe~l~-~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvG  336 (652)
                      .+..++..|++|+ .+.| .+++-..-..+ .+ .-.+||++|+..- ..+..++.++|-+.|++  ..++.| .+++||
T Consensus        30 ~~~ev~~~l~~npk~~~IiqlPCPE~~yLg-~~-R~~~tke~~d~~~yRr~c~ki~~pi~~~l~e--~k~d~~-kii~IG  104 (164)
T COG5418          30 TAKEVRKALPSNPKDWNIIQLPCPEFEYLG-WP-RPPMTKEVFDHPGYRRVCRKIADPIGRVLEE--EKPDGI-KIIFIG  104 (164)
T ss_pred             HHHHHHHHHCCCCCCCCEEECCCCHHHHHC-CC-CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHH--HCCCCC-EEEEEE
T ss_conf             788888764059777855762583677607-89-9874877742553999999999999999998--486770-599995


No 277
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=37.39  E-value=16  Score=15.02  Aligned_cols=37  Identities=22%  Similarity=0.249  Sum_probs=28.8

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8537788740257886344211222222221024788
Q gi|255764494|r  140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -..|..++--|||.+--|-.++.=.-+=|++|||++-
T Consensus       141 ~~~p~~LSGGq~QRv~iAraL~~~P~llllDEPT~~L  177 (228)
T PRK10584        141 DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNL  177 (228)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             0887889979999999999987599999984997678


No 278
>PRK08256 lipid-transfer protein; Provisional
Probab=37.34  E-value=9.2  Score=16.89  Aligned_cols=58  Identities=12%  Similarity=0.035  Sum_probs=26.2

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             587199999999999999999983884733698537788740257886344211222222
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLR  167 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~  167 (652)
                      ..++..++.+.-.+...+.|-- -...|+.+++..-- -.....+....++-++|+.+.+
T Consensus        18 ~~~~~~~L~~eA~~~AL~dAGi-~~~~ID~v~~G~~~-~~~~~~~~a~~~~g~~g~P~~t   75 (391)
T PRK08256         18 ASWDYPDMAAEAGRAALADAGI-DYDEVQQAYVGYVY-GDSTSGQRALYEVGMTGIPVVN   75 (391)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCC-CHHHCCEEEEEECC-CCCCCHHHHHHHCCCCCCCEEE
T ss_conf             9999999999999999998298-98998999897036-8750059999961336996588


No 279
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=37.33  E-value=15  Score=15.36  Aligned_cols=37  Identities=24%  Similarity=0.211  Sum_probs=28.7

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8537788740257886344211222222221024788
Q gi|255764494|r  140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -.-|..++--|||.+--|..++.=.-+-|++||||+-
T Consensus       136 ~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPTs~L  172 (242)
T PRK11124        136 DRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL  172 (242)
T ss_pred             HCCCHHCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf             3873227999989999876433799799976886548


No 280
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.21  E-value=14  Score=15.44  Aligned_cols=36  Identities=28%  Similarity=0.326  Sum_probs=27.8

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|...+--|||.+--|+.+|-=.-+=+++||||+-
T Consensus       140 ~~p~~LSGGqkQRvaiA~aL~~~P~iLllDEPTs~L  175 (287)
T PRK13637        140 KSPFELSGGQKRRVAIAGVVAMEPKVLILDEPTAGL  175 (287)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             891129988999999999998399999983886648


No 281
>PRK07516 acetyl-CoA acetyltransferase; Provisional
Probab=37.20  E-value=9.6  Score=16.75  Aligned_cols=32  Identities=9%  Similarity=-0.020  Sum_probs=21.5

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             719999999999999999998388473369853
Q gi|255764494|r  110 YSPSQISAIVLQKMKETAESFLGETVSKAVITV  142 (652)
Q Consensus       110 ~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV  142 (652)
                      .++.++.+..++...+.|-- -...|+.+++..
T Consensus        20 ~s~~~L~~~A~~~Al~dAgl-~~~dID~v~~G~   51 (389)
T PRK07516         20 ETLESLIVRVAREALADAGI-AAGDVDGIFLGH   51 (389)
T ss_pred             CCHHHHHHHHHHHHHHHHCC-CHHHCCEEEEEE
T ss_conf             89999999999999999690-989939999982


No 282
>cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function.  The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=36.95  E-value=21  Score=14.11  Aligned_cols=46  Identities=24%  Similarity=0.437  Sum_probs=32.8

Q ss_pred             HHHHCCCCCCHHCCCCCEEEEE--EEEC-----CCCCCHHHHHHHHHHCCCCC
Q ss_conf             0110011110101356311014--6630-----78530567788654101111
Q gi|255764494|r  310 KTVEPCKKCLQDAGLSPSDIDE--VVLV-----GGMTRMPKIQQSVQDFFNKS  355 (652)
Q Consensus       310 ~~~~~i~~~L~~a~~~~~~I~~--V~lv-----GGssriP~v~~~i~~~fg~~  355 (652)
                      .+++-|+.+|+.+|.+.+||=.  +.|+     .+....+.+.+...++|+..
T Consensus        45 ~v~~ni~~~L~~aG~~~~dVVk~~vylv~~~~~~~~~D~~~~~~~~~~~f~~~   97 (126)
T cd06151          45 SVLKRIETILQSQGLTMGDVVKMRVFLVADPALDGKMDFAGFMKAYRQFFGTA   97 (126)
T ss_pred             HHHHHHHHHHHHCCCCHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999849998998999999952665454366999999999985664


No 283
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.75  E-value=16  Score=15.18  Aligned_cols=37  Identities=24%  Similarity=0.176  Sum_probs=28.6

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8537788740257886344211222222221024788
Q gi|255764494|r  140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      =.-|...+--|||.+--|-.++.=..+-|.+|||+|-
T Consensus       131 ~~~p~~LSGGq~QRvaIARALv~~P~illlDEPts~L  167 (235)
T cd03261         131 DLYPAELSGGMKKRVALARALALDPELLLYDEPTAGL  167 (235)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             4784106999999999999985489989980886647


No 284
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=36.70  E-value=12  Score=16.10  Aligned_cols=85  Identities=25%  Similarity=0.406  Sum_probs=42.4

Q ss_pred             HHHCCCCCCCHHHHHHHHCCC-EEEEEC-CCCEEEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf             675498687267876520198-699975-998279995795871999999999999999999838847336985377887
Q gi|255764494|r   70 KRLIGRRFNDSTVAKDASLVP-FKIVEG-KGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFN  147 (652)
Q Consensus        70 KrliG~~~~d~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~  147 (652)
                      ||-+|--|      ++.+.+| |.|..| .-|........+..+++.|+.++            |  +...+-=.|..-+
T Consensus        74 kRr~GYVF------QeA~LFPHl~Vr~NL~YG~~~~~~~~r~i~~~~v~~lL------------g--i~hLL~R~p~~LS  133 (361)
T TIGR02142        74 KRRIGYVF------QEARLFPHLSVRGNLRYGMKRARPKERRISFERVIELL------------G--IEHLLERLPGRLS  133 (361)
T ss_pred             CCEEEEEE------ECCEECCCHHHHHHHHCCCCCCCHHHCCCCHHHHHHHH------------C--CCCCCCCCCCCCC
T ss_conf             11353688------53550785233455125721057412137889999874------------6--7511216788757


Q ss_pred             --CCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             --40257886344211222222221024788
Q gi|255764494|r  148 --DAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       148 --~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                        +.||=|+=-| -++. .-+=|++||-||-
T Consensus       134 GGEkQRVAIGRA-LLs~-P~LLLMDEPLaaL  162 (361)
T TIGR02142       134 GGEKQRVAIGRA-LLSS-PRLLLMDEPLAAL  162 (361)
T ss_pred             CCCHHHHHHHHH-HHCC-CCHHHCCCCHHHC
T ss_conf             840477889988-7418-7411104662340


No 285
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota.  The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed.  This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways.  Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO.  Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=36.57  E-value=14  Score=15.63  Aligned_cols=36  Identities=28%  Similarity=0.315  Sum_probs=28.1

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|..++--|||.+--|..++.=..+-+++|||++-
T Consensus       130 ~~~~~LSGGqkQrv~iAral~~~P~ililDEPTsgL  165 (211)
T cd03225         130 RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGL  165 (211)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             895459998999999999997599999997985558


No 286
>pfam02970 TBCA Tubulin binding cofactor A.
Probab=36.47  E-value=23  Score=13.82  Aligned_cols=68  Identities=13%  Similarity=0.296  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             68999999998999899999999999999999999999---9872202998999999999999999872489
Q gi|255764494|r  507 IEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQS---LREHGDKIAEAEQKSIRESIDALRTLLNDAD  575 (652)
Q Consensus       507 i~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~---l~e~~~klse~ek~~i~~~l~e~e~wl~~~~  575 (652)
                      +.|++++...+..+-...+.+++..-.-..--|.++++   |++ ...+-++-+..|..++++++.||.+..
T Consensus         9 vkRL~KE~~~Y~kE~~~q~~rvek~k~e~~dey~ikkq~evL~E-t~~miPd~~~Rl~~a~~~L~~~l~~~~   79 (90)
T pfam02970         9 VKRLIKEEASYEKEVEQQEERVEKLKAEGADEYDLKKQEEVLKE-TQMMLPDCKRRLQKAVADLEEYLEEYE   79 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999999999998758988889999999999-999707899999999999999998857


No 287
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.26  E-value=16  Score=15.14  Aligned_cols=35  Identities=26%  Similarity=0.276  Sum_probs=26.9

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -|...+--|||.+--|+.+|.=.-+-+++||||+-
T Consensus       142 ~p~~LSGGqkqRvaiA~aL~~~P~iLllDEPTsgL  176 (280)
T PRK13649        142 NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL  176 (280)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             90009999999999999997499999984875548


No 288
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=36.18  E-value=24  Score=13.79  Aligned_cols=18  Identities=22%  Similarity=0.289  Sum_probs=9.1

Q ss_pred             CEEECHHHHH--HHHHHHHH
Q ss_conf             9587199999--99999999
Q gi|255764494|r  107 GKQYSPSQIS--AIVLQKMK  124 (652)
Q Consensus       107 ~~~~~peei~--a~iL~~lk  124 (652)
                      +..++|+|+.  +.+|..++
T Consensus        82 g~~L~~~EL~~i~~~L~~~~  101 (780)
T PRK00409         82 GGVLSGDELLEIAKTLRYFR  101 (780)
T ss_pred             CCCCCHHHHHHHHHHHHHHH
T ss_conf             89789999999999999999


No 289
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=36.14  E-value=24  Score=13.78  Aligned_cols=48  Identities=21%  Similarity=0.167  Sum_probs=31.6

Q ss_pred             EEEEEECCCCCCHHHHH-HHHHHCCCCCCCCCC-CCCCHHHHHHHHCCCC
Q ss_conf             01466307853056778-865410111111135-6531011111000223
Q gi|255764494|r  329 IDEVVLVGGMTRMPKIQ-QSVQDFFNKSPSKGV-NPDEVVAMGAAIQAGV  376 (652)
Q Consensus       329 I~~V~lvGGssriP~v~-~~i~~~fg~~~~~~~-npdeaVa~GAA~~a~~  376 (652)
                      ++.+.+.||...-=..- +++.+.+..++...- -.|.-.|.|||+++..
T Consensus       286 ~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAAl~~~~  335 (555)
T COG2192         286 EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAALAVKR  335 (555)
T ss_pred             CCCEEECCCEEEEEEEHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             66448715213543112767605667615765788984018999999999


No 290
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain; InterPro: IPR005972    The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex.
Probab=36.13  E-value=4  Score=19.62  Aligned_cols=129  Identities=19%  Similarity=0.270  Sum_probs=49.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC-----C-----CCCEEEEEECCCCCCCC
Q ss_conf             3322455213447665536787642013430244789999999999885411-----5-----56503586304434678
Q gi|255764494|r  217 NGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIEL-----S-----STSQTEINLPFISANSA  286 (652)
Q Consensus       217 ~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~L-----S-----~~~~~~i~i~~~~~~~~  286 (652)
                      -||-|+|||.+-..+   |++++.-+--...+.|.- +. =+..+.+||-.|     |     ..-+...-||.+.-++.
T Consensus       216 iGdYNIGGDAW~~~~---lLEe~GlrvvA~~sGDgT-~~-~~~~~~~akLnli~CyRSmNYi~~~MEekYGiPW~e~NFf  290 (521)
T TIGR01282       216 IGDYNIGGDAWASRI---LLEEIGLRVVAQWSGDGT-LA-EIENTPKAKLNLIHCYRSMNYISRHMEEKYGIPWMEYNFF  290 (521)
T ss_pred             EECCCCCCHHHHHHH---HHHHCCCEEEEEECCCHH-HH-HHHCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCEEEECC
T ss_conf             724477730889999---997369489985026268-99-9860666664689851436688778786508983687334


Q ss_pred             CCCEEEEEECC--C-----CCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHC
Q ss_conf             87212687311--0-----00012342000011001111010135631101466307853056778865410
Q gi|255764494|r  287 GAQHLNMKLTR--A-----QFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDF  351 (652)
Q Consensus       287 ~g~d~~~~itR--~-----~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~  351 (652)
                      |...+..+|..  +     ++.+-++..+.+=...++.++.+..-..+.=...+.||| +|--.+..+.+++
T Consensus       291 Gp~~i~~sLR~iA~~FDd~~i~~~~E~VIA~y~~~~~~~i~~yr~rl~Gk~v~L~vGG-lR~rh~~~a~~dL  361 (521)
T TIGR01282       291 GPTKIAESLRKIAEFFDDPEIKEKAEEVIAKYQPQVDAVIAKYRPRLEGKTVMLYVGG-LRPRHVIGAYEDL  361 (521)
T ss_pred             CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC-CCCCHHHHHHHHC
T ss_conf             8468999999998546966788888899998889999999999874249999997178-9740235446538


No 291
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=36.12  E-value=22  Score=14.00  Aligned_cols=201  Identities=20%  Similarity=0.290  Sum_probs=89.4

Q ss_pred             EEECCCCCCCH-HHHHHHHHHHCCCCCCC---C---CCCHHHHH--HHHHCCCC-CCCEEEEEEECCCEEEEEEEEECCC
Q ss_conf             85377887402-57886344211222222---2---21024788--88603445-6550799872441145431010231
Q gi|255764494|r  140 ITVPAYFNDAQ-RQATKDAGRIAGLDVLR---I---INEPTAAA--LAYGLDKK-DARTVIVFDFGGGTFDVSLLEMGDG  209 (652)
Q Consensus       140 itVP~~f~~~q-R~a~~~Aa~~AGl~v~~---l---i~EptAAa--l~Y~~~~~-~~~~vlV~D~Gggt~dvsi~~~~~~  209 (652)
                      +.||+|--|.+ -..+.+-|++.|+.-++   +   +|-- |+|  .+|-+.+. ++-+++|..||||+   ||....+|
T Consensus       121 ~gvPayIVDPvvVDEm~~~Ar~SG~p~i~RkSiFHALN~K-AVarr~A~e~gk~yee~n~vVaHmGggi---SV~ah~~G  196 (358)
T COG3426         121 LGVPAYIVDPVVVDEMEDVARFSGIPEIERKSIFHALNQK-AVARRAAKEVGKRYEEMNIVVAHMGGGI---SVGAHKQG  196 (358)
T ss_pred             CCCCEEEECCEEHHHCCHHHHHCCCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCHHHHEEEEEECCCCE---EEEEECCC
T ss_conf             0997166675003220545510689662057788886278-9999999985225455337888606843---78871478


Q ss_pred             E-EEEECC-CCCCCCC----CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf             4-654201-3322455----213447665536787642013430244789999999999885411556503586304434
Q gi|255764494|r  210 V-FEVKAT-NGDTFLG----GEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISA  283 (652)
Q Consensus       210 ~-~~vl~~-~gd~~lG----G~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~  283 (652)
                      . ++|-.+ .|+.-++    |.-=...+++.|   |..+|.                .+.+++.+....- -+..  +  
T Consensus       197 rvIDvnnaldgeGPfspersG~lP~~dlv~lc---fSgk~t----------------~~El~k~i~g~gG-~~ay--l--  252 (358)
T COG3426         197 RVIDVNNALDGEGPFSPERSGTLPTGDLVRLC---FSGKYT----------------EEELLKKITGKGG-LVAY--L--  252 (358)
T ss_pred             CEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH---HCCCCC----------------HHHHHHHHHCCCC-EEEE--E--
T ss_conf             57852688789999882327898758999999---657333----------------9999998506885-5998--3--


Q ss_pred             CCCCCCEEEEEECCCC-CCCCCCCCHHHHH-HCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC----CCC
Q ss_conf             6788721268731100-0012342000011-001111010135631101466307853056778865410111----111
Q gi|255764494|r  284 NSAGAQHLNMKLTRAQ-FERLVNHLIQKTV-EPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK----SPS  357 (652)
Q Consensus       284 ~~~~g~d~~~~itR~~-fe~l~~~l~~~~~-~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~----~~~  357 (652)
                         +-.|+.-...|.+ =++-++-.++-+. +.++..=..+-.-+..+|.|+|+||-.+--.+-.+|.++..-    .+.
T Consensus       253 ---GT~d~~~v~~~~~~Gd~~a~~~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~  329 (358)
T COG3426         253 ---GTNDAKEVERRIEQGDEKAKLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVY  329 (358)
T ss_pred             ---CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCEEEC
T ss_conf             ---46409999999971319999999999999999987666430798777997161154799999999988662315761


Q ss_pred             CCCCCCCHHHHHHH
Q ss_conf             13565310111110
Q gi|255764494|r  358 KGVNPDEVVAMGAA  371 (652)
Q Consensus       358 ~~~npdeaVa~GAA  371 (652)
                      -.-|-.+|.|.||-
T Consensus       330 PGE~EleALA~G~l  343 (358)
T COG3426         330 PGEDELEALAEGAL  343 (358)
T ss_pred             CCCHHHHHHHHHHH
T ss_conf             78068999986337


No 292
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains.  The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in  plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose.  Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=35.96  E-value=24  Score=13.76  Aligned_cols=21  Identities=24%  Similarity=0.430  Sum_probs=10.4

Q ss_pred             HHHHHHHHCCCCCCCEEEEEE
Q ss_conf             478888603445655079987
Q gi|255764494|r  173 TAAALAYGLDKKDARTVIVFD  193 (652)
Q Consensus       173 tAAal~Y~~~~~~~~~vlV~D  193 (652)
                      -|.||.|++.......++++|
T Consensus        72 K~~alN~al~~a~gd~v~~~D   92 (241)
T cd06427          72 KPKACNYALAFARGEYVVIYD   92 (241)
T ss_pred             HHHHHHHHHHHCCCCEEEEEC
T ss_conf             699999999961588599978


No 293
>pfam01385 Transposase_2 Probable transposase. This family includes IS891, IS1136 and IS1341. DUF1225, pfam06774, has now been merged into this family.
Probab=35.95  E-value=24  Score=13.76  Aligned_cols=11  Identities=18%  Similarity=0.208  Sum_probs=4.3

Q ss_pred             EEEEEEECCCE
Q ss_conf             07998724411
Q gi|255764494|r  188 TVIVFDFGGGT  198 (652)
Q Consensus       188 ~vlV~D~Gggt  198 (652)
                      .++=+|+|=.+
T Consensus       124 ~~~GIDlGi~~  134 (226)
T pfam01385       124 KAAGIDLGINN  134 (226)
T ss_pred             CEEEEECCCCE
T ss_conf             35899527765


No 294
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.89  E-value=15  Score=15.29  Aligned_cols=40  Identities=20%  Similarity=0.129  Sum_probs=29.4

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             3698537788740257886344211222222221024788
Q gi|255764494|r  137 KAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       137 ~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      +.-=.-|..++--|||.+--|..++.=.-+=|++|||++-
T Consensus       123 ~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPts~L  162 (220)
T cd03293         123 GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSAL  162 (220)
T ss_pred             HHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             4761893129999999999999986699999980887656


No 295
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.83  E-value=16  Score=15.08  Aligned_cols=39  Identities=21%  Similarity=0.086  Sum_probs=29.0

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             698537788740257886344211222222221024788
Q gi|255764494|r  138 AVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       138 ~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      ..-.-|...+--|||.+--|..+|.=.-+-+++||||+-
T Consensus       129 ~~~~~p~~LSGGqkQRvaiA~aLa~~P~iLiLDEPTs~L  167 (274)
T PRK13644        129 YRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSML  167 (274)
T ss_pred             HHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             762891109976999999999998299999997986678


No 296
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=35.82  E-value=24  Score=13.75  Aligned_cols=72  Identities=22%  Similarity=0.264  Sum_probs=37.0

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--ECC--CCCCCHHHHHHHHH---HHCCCCCCCCCCCH-HHHHHHH
Q ss_conf             5871999999999999999999838847336985--377--88740257886344---21122222222102-4788886
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVIT--VPA--YFNDAQRQATKDAG---RIAGLDVLRIINEP-TAAALAY  179 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~Vit--VP~--~f~~~qR~a~~~Aa---~~AGl~v~~li~Ep-tAAal~Y  179 (652)
                      +.++|++|.+..++.+...+...-...|+++++.  +|.  ......|++.+.|+   ...++.+-|..-.. .|..+++
T Consensus        27 ~~~~~~~L~a~~i~~~l~r~~~l~~~~Id~vi~G~~~~~~~~g~n~aR~aal~aGlp~~vp~~tVnr~C~SGl~Ai~~Aa  106 (399)
T PRK09052         27 KNTRPDDLLAHVLRAAVAQVPGLDPKLIEDAIVGCAMPEAEQGLNVARIGALLAGLPNSVGGVTVNRFCASGLQAVAMAA  106 (399)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHH
T ss_conf             88998999999999999865797989989799970644565566899999997599988871578651336899999999


No 297
>PRK13331 pantothenate kinase; Reviewed
Probab=35.54  E-value=24  Score=13.71  Aligned_cols=21  Identities=10%  Similarity=0.290  Sum_probs=18.2

Q ss_pred             EEEEECCCCEEEEEEEECCEE
Q ss_conf             699804866069999989955
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNV   24 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~   24 (652)
                      .+-||.|+|+.+.++++++..
T Consensus         9 ~L~IDIGNT~ik~g~f~~~~l   29 (251)
T PRK13331          9 WLALMIGNSRLHWGYFSGETL   29 (251)
T ss_pred             EEEEEECCCCEEEEEEECCEE
T ss_conf             799997644159999989998


No 298
>pfam06008 Laminin_I Laminin Domain I. coiled-coil structure. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure.
Probab=35.53  E-value=24  Score=13.71  Aligned_cols=74  Identities=16%  Similarity=0.254  Sum_probs=38.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHHHHHHH----C--CCHHHHHHHHHHHHHHH
Q ss_conf             112456689999999989998999-----9999-9999999999999999987220----2--99899999999999999
Q gi|255764494|r  501 GLSSEDIEKMVKDAEMNAEMDKKR-----REAV-ETKNHAESLIYSTEQSLREHGD----K--IAEAEQKSIRESIDALR  568 (652)
Q Consensus       501 ~Ls~eei~~~~~eae~~~~~Dk~~-----re~~-eakN~lEs~iy~~~~~l~e~~~----k--lse~ek~~i~~~l~e~e  568 (652)
                      .++..++.+++.+|+.+-.+-+.+     +... ....+++.++..+++.+.....    .  .--+.....+..+.+++
T Consensus       118 ~~~~~~l~~~L~eA~~mL~eir~r~~~~~~~~Ae~el~~A~~LL~~v~~~~~~~~~~n~~l~~~l~~~L~~~~~kL~Dlr  197 (263)
T pfam06008       118 ALPGSALSRMLAEAQRMLGEIRERDFQKQLQNAEAELKAAEELLNRVQTWFQTPQEENEGLFEALRDDLNEYEAKLSDLR  197 (263)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             68745599999999999999987585588877899999999999999998876776689999999999999988999999


Q ss_pred             HHHHCC
Q ss_conf             987248
Q gi|255764494|r  569 TLLNDA  574 (652)
Q Consensus       569 ~wl~~~  574 (652)
                      +||++.
T Consensus       198 ~~l~eA  203 (263)
T pfam06008       198 ELLDEA  203 (263)
T ss_pred             HHHHHH
T ss_conf             999999


No 299
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=35.22  E-value=18  Score=14.72  Aligned_cols=12  Identities=42%  Similarity=0.706  Sum_probs=6.0

Q ss_pred             EEEEEEEECCCC
Q ss_conf             110146630785
Q gi|255764494|r  327 SDIDEVVLVGGM  338 (652)
Q Consensus       327 ~~I~~V~lvGGs  338 (652)
                      .+|..|+|.||-
T Consensus         7 ~~I~~vILAGGk   18 (196)
T PRK00560          7 DNIPCVILAGGK   18 (196)
T ss_pred             CCCCEEEECCCC
T ss_conf             684089973787


No 300
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=35.09  E-value=25  Score=13.66  Aligned_cols=104  Identities=20%  Similarity=0.319  Sum_probs=58.3

Q ss_pred             CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf             146542013322455213447665536787642013---43024478999999999988541155650358630443467
Q gi|255764494|r  209 GVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENG---IDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANS  285 (652)
Q Consensus       209 ~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~---~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~  285 (652)
                      |+=+|.-|+|.+-|= .|+...+.     ......+   +.+++|-.   .|.+-++.+|..  .-....|++++     
T Consensus        61 Gi~kvRlTGGEPLlR-~dl~~li~-----~l~~~~gi~~islTTNG~---lL~~~a~~Lk~a--GL~rvNISLDs-----  124 (329)
T PRK13361         61 GVRKIRLTGGEPLVR-TGCDQLVA-----RLGKLPGLEELSMTTNGS---RLARFAAELADA--GLKRLNISLDT-----  124 (329)
T ss_pred             CCEEEEEECCCCCCC-CCHHHHHH-----HHHHCCCCCEEEEECCHH---HHHHHHHHHHHC--CCCEEEEECCC-----
T ss_conf             952899627882235-68899999-----986179977189966477---689999999977--99869973577-----


Q ss_pred             CCCCEEEEEECCCCCCCCC-CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCC
Q ss_conf             8872126873110000123-4200001100111101013563110146630785
Q gi|255764494|r  286 AGAQHLNMKLTRAQFERLV-NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGM  338 (652)
Q Consensus       286 ~~g~d~~~~itR~~fe~l~-~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGs  338 (652)
                               +.++.|.++. .+-+.++.+-|+.|+ ++|+.+--|+.|++=|=.
T Consensus       125 ---------Ld~~~f~~ITr~~~l~~Vl~gI~aA~-~~G~~~VKiN~V~lrg~N  168 (329)
T PRK13361        125 ---------LNPDLFAALTRNGRLERVIAGIDAAK-AAGFERIKLNAVILRGQN  168 (329)
T ss_pred             ---------CCHHHHHHHHCCCCHHHHHHHHHHHH-HCCCCEEEEEEEEECCCC
T ss_conf             ---------99999997728997699999999999-779973889999836878


No 301
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=34.74  E-value=19  Score=14.44  Aligned_cols=45  Identities=22%  Similarity=0.439  Sum_probs=31.0

Q ss_pred             CCCEEEEEEEEC--CCCCCHHHHHHHHHHCCCC-----C--CCCCCCCCCHHHHHHH
Q ss_conf             563110146630--7853056778865410111-----1--1113565310111110
Q gi|255764494|r  324 LSPSDIDEVVLV--GGMTRMPKIQQSVQDFFNK-----S--PSKGVNPDEVVAMGAA  371 (652)
Q Consensus       324 ~~~~~I~~V~lv--GGssriP~v~~~i~~~fg~-----~--~~~~~npdeaVa~GAA  371 (652)
                      +..+.++.|+|.  ||||.-|   +.|...||+     +  +..+.||+..-+..+.
T Consensus       450 vr~~g~t~vvl~GMGGSSLaP---EVia~tf~~~~g~P~L~VLDSTDP~~V~a~~~~  503 (950)
T PRK09533        450 VKAQGFTDAVVLGMGGSSLGP---EVLAETFGQRDGFPKLHVLDSTDPAQVRALEAA  503 (950)
T ss_pred             HHHCCCCEEEEECCCCCHHHH---HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHC
T ss_conf             986698769994787320409---999987233579970799659898999999854


No 302
>TIGR01198 pgl 6-phosphogluconolactonase; InterPro: IPR005900    6-phosphogluconolactonase (3.1.1.31 from EC) is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway.  6-phospho-D-glucono-1,5-lactone + H2O = 6-phospho-D-gluconate. ; GO: 0017057 6-phosphogluconolactonase activity, 0006098 pentose-phosphate shunt.
Probab=34.71  E-value=19  Score=14.51  Aligned_cols=44  Identities=18%  Similarity=0.297  Sum_probs=33.5

Q ss_pred             CCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf             1234200001100111101013563110146630785305677886541
Q gi|255764494|r  302 RLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQD  350 (652)
Q Consensus       302 ~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~  350 (652)
                      ++++.+.+++...+.+||++-+-     -.|.|-||+|=+|+.+++-..
T Consensus         7 ~~~~~l~~~~~~~~~~Al~~~~~-----~~~alSGGr~p~~L~~~La~~   50 (251)
T TIGR01198         7 ELAEALAERIATKLQKALAERGQ-----FLLALSGGRSPIALLEALAAQ   50 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC-----EEEEEECCCCHHHHHHHHHHH
T ss_conf             89999999999999999997689-----689982487457899997786


No 303
>pfam09861 DUF2088 Uncharacterized conserved protein (DUF2088). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.68  E-value=12  Score=15.96  Aligned_cols=61  Identities=23%  Similarity=0.373  Sum_probs=39.3

Q ss_pred             HHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCC--------CCCCCHHHHHHH
Q ss_conf             001100111101013563110146630785305677886541011111113--------565310111110
Q gi|255764494|r  309 QKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKG--------VNPDEVVAMGAA  371 (652)
Q Consensus       309 ~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~~~--------~npdeaVa~GAA  371 (652)
                      .+++..+-+.|..+|+..++|.  ++++-++.=|.-.+-+..++|.++...        .|++..|-+|-.
T Consensus        71 ~~il~~ll~~L~~~Gv~~~~I~--iv~A~G~Hr~~t~eE~~~~lG~~i~~~~~v~~Hd~~d~~~lv~lG~T  139 (203)
T pfam09861        71 DIILPLLLEELNAVGIPDEDIT--ILVATGTHRPMTEEELKKILGEEVVKRIRIVNHDADDPDELVYLGTT  139 (203)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEE--EEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHCEEECCC
T ss_conf             7559999999997599812589--99826879999989999986088663868995799985783781207


No 304
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.51  E-value=17  Score=14.82  Aligned_cols=35  Identities=26%  Similarity=0.273  Sum_probs=26.6

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -|...+--|||.+--|..+|-=.-+-+++||||.-
T Consensus       147 ~p~~LSGGqkqRVaiA~aLa~~P~iLilDEPTagL  181 (289)
T PRK13645        147 SPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGL  181 (289)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             90109999999999999996399999995887648


No 305
>TIGR02707 butyr_kinase butyrate kinase; InterPro: IPR011245   This group represents bacterial butyrate kinase, an enzyme that facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate . The final steps in butyrate synthesis by anaerobic bacteria can occur via butyrate kinase and phosphotransbutyrylase or via butyryl-CoA:acetate CoA-transferase, the latter providing the dominant route for butyrate formation in human colonic bacteria .; GO: 0005524 ATP binding, 0047761 butyrate kinase activity, 0016310 phosphorylation, 0005737 cytoplasm.
Probab=34.49  E-value=23  Score=13.91  Aligned_cols=193  Identities=20%  Similarity=0.337  Sum_probs=90.1

Q ss_pred             EE-ECCCCC-CCHHHHHHHHHHHCCCCCCC---C---CCCHHHHHHHHH--CCC-CCCCEEEEEEECCCEEEEEEEEECC
Q ss_conf             85-377887-40257886344211222222---2---210247888860--344-5655079987244114543101023
Q gi|255764494|r  140 IT-VPAYFN-DAQRQATKDAGRIAGLDVLR---I---INEPTAAALAYG--LDK-KDARTVIVFDFGGGTFDVSLLEMGD  208 (652)
Q Consensus       140 it-VP~~f~-~~qR~a~~~Aa~~AGl~v~~---l---i~EptAAal~Y~--~~~-~~~~~vlV~D~Gggt~dvsi~~~~~  208 (652)
                      +. ||||== +.==--+-+-||+.|++-+.   +   +|-- |+|=-|+  +.+ .++-+++|+-||||   +||....+
T Consensus       118 ~~diPafIVDPVVVDEledvARISG~P~i~RkSIfHALNqK-AvARr~A~e~gK~YE~~N~ivaHlGGG---ISvaAH~~  193 (353)
T TIGR02707       118 LNDIPAFIVDPVVVDELEDVARISGLPEIERKSIFHALNQK-AVARRIAKELGKRYEEMNLIVAHLGGG---ISVAAHRK  193 (353)
T ss_pred             CCCCCEEEECCCEECCCCCHHHHCCCCCCCCEEHHHHHHHH-HHHHHHHHHCCCCCCCCCEEEEECCCC---CEEEEECC
T ss_conf             18943588268335055101321388986411044443388-999999997289600445489982887---03414548


Q ss_pred             CE-EEEE-CCCCCCCC-----CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             14-6542-01332245-----52134476655367876420134302447899999999998854115565035863044
Q gi|255764494|r  209 GV-FEVK-ATNGDTFL-----GGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFI  281 (652)
Q Consensus       209 ~~-~~vl-~~~gd~~l-----GG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~  281 (652)
                      |. ++|- |-.|+--+     |+-=+- -|+++|   |..||-                -|..|+.++.+-=..-   +|
T Consensus       194 Gr~vDVNNALdGeGPFSPERsG~LP~~-dlv~lC---ySGkyT----------------~~E~kKkI~G~GGl~a---yL  250 (353)
T TIGR02707       194 GRVVDVNNALDGEGPFSPERSGTLPLG-DLVDLC---YSGKYT----------------KEEMKKKIVGKGGLVA---YL  250 (353)
T ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCHH-HHHHHH---HCCCHH----------------HHHHHHHHCCCCCCEE---EC
T ss_conf             617997347784329387545656588-899987---276103----------------8899998526745332---54


Q ss_pred             CCCCCCCCEEEEEECCCCCCCCCCC---CHHHHHHC-CCCCCHH----CCCCCEEEEEEEECCCCCCHHH-HHHHHHHCC
Q ss_conf             3467887212687311000012342---00001100-1111010----1356311014663078530567-788654101
Q gi|255764494|r  282 SANSAGAQHLNMKLTRAQFERLVNH---LIQKTVEP-CKKCLQD----AGLSPSDIDEVVLVGGMTRMPK-IQQSVQDFF  352 (652)
Q Consensus       282 ~~~~~~g~d~~~~itR~~fe~l~~~---l~~~~~~~-i~~~L~~----a~~~~~~I~~V~lvGGssriP~-v~~~i~~~f  352 (652)
                      ..     .|+.      +.++.++.   -...+.+. +-++=+.    |-+=..+||.|+|+||-.+--. +-+.|.+..
T Consensus       251 GT-----nD~r------eV~~~I~~GD~kA~~ildAMaYQiAKeIG~mavVL~G~VDAI~LTGGlAys~~f~v~~I~~~v  319 (353)
T TIGR02707       251 GT-----NDAR------EVEKKIEAGDEKAKLILDAMAYQIAKEIGKMAVVLKGKVDAIILTGGLAYSKYFFVSEIRKRV  319 (353)
T ss_pred             CC-----CCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEEEECCCHHCCCCHHHHHHHHCC
T ss_conf             55-----8888------999999731088999998654587567742504003726689854601306204558776133


Q ss_pred             C----CCCCCCCCCCCHHHHHH
Q ss_conf             1----11111356531011111
Q gi|255764494|r  353 N----KSPSKGVNPDEVVAMGA  370 (652)
Q Consensus       353 g----~~~~~~~npdeaVa~GA  370 (652)
                      .    ..+.-.-|=++|-+.||
T Consensus       320 ~fIAPv~vYPGEdEm~AL~~Ga  341 (353)
T TIGR02707       320 SFIAPVLVYPGEDEMEALAEGA  341 (353)
T ss_pred             CEECCEEEECCCCHHHHHHCCC
T ss_conf             2103668825981899985264


No 306
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=34.40  E-value=12  Score=16.01  Aligned_cols=38  Identities=16%  Similarity=0.249  Sum_probs=17.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-EECCCCCCC
Q ss_conf             199999999999999999983884733698-537788740
Q gi|255764494|r  111 SPSQISAIVLQKMKETAESFLGETVSKAVI-TVPAYFNDA  149 (652)
Q Consensus       111 ~peei~a~iL~~lk~~ae~~l~~~v~~~Vi-tVP~~f~~~  149 (652)
                      ++.++...-...-...|-- ....|+.+++ +.|..|...
T Consensus        29 s~~eL~~eA~~~Al~DAGl-~~~dID~~~~g~~~~~~~g~   67 (393)
T PRK06065         29 TPQELAWEAARQALDEAGL-ELKDIDCVVIGSAPDAFDGV   67 (393)
T ss_pred             CHHHHHHHHHHHHHHHCCC-CHHHCCEEEEECCCCCCCCC
T ss_conf             9999999999999998499-98998999995567654543


No 307
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=34.29  E-value=19  Score=14.55  Aligned_cols=41  Identities=24%  Similarity=0.264  Sum_probs=30.0

Q ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             33698537788740257886344211222222221024788
Q gi|255764494|r  136 SKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       136 ~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .+..-..|...+.-|||.+--|..++.=.-+=+++|||++-
T Consensus       127 ~~~~~~~~~~LSGGq~QRvaiAraL~~~P~lLllDEPt~~L  167 (240)
T PRK09493        127 AERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSAL  167 (240)
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             24662987728999999999998773599999990887668


No 308
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient.  The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes.  The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system.  PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein.  PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=34.27  E-value=18  Score=14.65  Aligned_cols=34  Identities=24%  Similarity=0.210  Sum_probs=25.2

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             7788740257886344211222222221024788
Q gi|255764494|r  143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      |...+--|||.+--|-.+|.=.-+=|++|||++-
T Consensus       139 p~~LSGGq~QRvaIArAL~~~P~iLllDEPTs~L  172 (227)
T cd03260         139 ALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL  172 (227)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             0228999999999999983599999968987657


No 309
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.13  E-value=15  Score=15.20  Aligned_cols=35  Identities=26%  Similarity=0.373  Sum_probs=28.0

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -|..++--|||.+--|..+|.=.-+-+++||||.-
T Consensus       134 ~~~~LSGGqkqRvaiA~aL~~~P~lLlLDEPtagL  168 (277)
T PRK13652        134 VPHHLSGGEKKRVAIAGILAMEPQVLVLDEPTAGL  168 (277)
T ss_pred             CHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf             95448999999999999998299999983974548


No 310
>PRK10744 phosphate transporter subunit; Provisional
Probab=33.95  E-value=20  Score=14.31  Aligned_cols=35  Identities=23%  Similarity=0.127  Sum_probs=25.0

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -|..++--|||.+--|..+|.=.-+-|++|||++-
T Consensus       150 ~~~~LSGGqkQRvaiArAL~~~P~vLllDEPts~L  184 (257)
T PRK10744        150 SGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSAL  184 (257)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             74558988989999987775199988877885536


No 311
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=33.91  E-value=17  Score=14.89  Aligned_cols=50  Identities=20%  Similarity=0.292  Sum_probs=34.8

Q ss_pred             CCCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             42000011001111010135631101466307853056778865410111111
Q gi|255764494|r  305 NHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPS  357 (652)
Q Consensus       305 ~~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~~~~  357 (652)
                      +-.+......++++|++++++++|||.+++-=++-+   +.+.+.+.+|.+..
T Consensus       222 ~~~~~~~~~~i~~~l~~~g~~~~did~~v~HQ~~~~---~~~~i~~~lgl~~~  271 (327)
T CHL00203        222 KFAVFQVPAVIQECLNALNISIDEVDWLLLHQANQR---ILEAVADRLSIPHS  271 (327)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHH---HHHHHHHHHCCCHH
T ss_conf             999999999999999876998111887998868899---99999998197978


No 312
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.84  E-value=18  Score=14.70  Aligned_cols=35  Identities=26%  Similarity=0.280  Sum_probs=26.6

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -|...+--|||.+--|..+|.=.-+=+++|||++-
T Consensus       129 ~p~~LSGGqkQRVaIA~aLa~~P~iLllDEPTs~L  163 (276)
T PRK13634        129 SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL  163 (276)
T ss_pred             CHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             90018999999999999997299989976985427


No 313
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=33.74  E-value=19  Score=14.45  Aligned_cols=35  Identities=11%  Similarity=0.030  Sum_probs=26.1

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -|..++.-|||.+--|..++.=.-+-+++|||++.
T Consensus       140 ~~~~LSgGqkqrl~lA~al~~~P~iLiLDEPts~L  174 (264)
T PRK13546        140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVG  174 (264)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             55347999999999999995699999995987548


No 314
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=33.64  E-value=19  Score=14.56  Aligned_cols=37  Identities=24%  Similarity=0.229  Sum_probs=28.9

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8537788740257886344211222222221024788
Q gi|255764494|r  140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      =..|...+--|||.+--|-.+|.=.-+-|.+|||+|-
T Consensus       135 ~~~p~~LSGGqkQRV~IArALa~~P~iLl~DEPTsaL  171 (343)
T PRK11153        135 DSYPANLSGGQKQRVAIARALASNPKVLLCDEATSAL  171 (343)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             1975118999999999999986699999992887658


No 315
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=33.53  E-value=20  Score=14.30  Aligned_cols=35  Identities=14%  Similarity=0.101  Sum_probs=22.5

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .|..++.-|||.+.-|..++.=..+-+++|||++-
T Consensus       142 ~~~~lSGGqkqRv~iaral~~~P~lllLDEPtsgL  176 (248)
T PRK09580        142 VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGL  176 (248)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             45578988999999999997689989997962239


No 316
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane.  The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=33.46  E-value=16  Score=15.03  Aligned_cols=37  Identities=24%  Similarity=0.300  Sum_probs=27.5

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8537788740257886344211222222221024788
Q gi|255764494|r  140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      =..|...+--|+|.+--|-.++.=..+=|.+||||+-
T Consensus       131 ~~~p~~LSGGqkQRvaIARALv~~P~ill~DEPT~~L  167 (214)
T cd03292         131 RALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNL  167 (214)
T ss_pred             CCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             4994248889999999999997299999983987877


No 317
>PRK13322 pantothenate kinase; Reviewed
Probab=33.40  E-value=26  Score=13.47  Aligned_cols=20  Identities=15%  Similarity=0.326  Sum_probs=16.7

Q ss_pred             EEEEECCCCEEEEEEEECCE
Q ss_conf             69980486606999998995
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKN   23 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~   23 (652)
                      ++-||.|||+.+.+++.++.
T Consensus         2 ~LlIDiGNT~ik~~l~~~~~   21 (252)
T PRK13322          2 ILELDCGNSRLKWRVTDNAG   21 (252)
T ss_pred             EEEEEECCCCEEEEEEECCC
T ss_conf             89999863612999998996


No 318
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.  This family is also known as MRP (mulrtidrug resisitance-associated protein).  Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed.  MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=33.29  E-value=20  Score=14.36  Aligned_cols=38  Identities=21%  Similarity=0.111  Sum_probs=25.4

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             98537788740257886344211222222221024788
Q gi|255764494|r  139 VITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       139 VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      +-.-|..++.-|||.+--|-.++.=.-+-+++|||++-
T Consensus       133 ~~~~~~~LSgGqkQrv~lARal~~~p~ililDEpts~L  170 (221)
T cd03244         133 VEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASV  170 (221)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             03666779999999999999996599999997975679


No 319
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=33.28  E-value=26  Score=13.46  Aligned_cols=130  Identities=27%  Similarity=0.397  Sum_probs=64.4

Q ss_pred             EEEEECCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             79995795871999999999999999999838847336985377887402578863442112222222210247888860
Q gi|255764494|r  101 AWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG  180 (652)
Q Consensus       101 ~~~~~~~~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~  180 (652)
                      -.|.++|+..+++++...+. .++......   .     .+-|.||                 ++      -||+|+.| 
T Consensus        86 ERI~ing~~Isd~~~~~~~~-~ve~~~~~~---~-----~~~~T~F-----------------E~------~Ta~Af~~-  132 (427)
T COG0285          86 ERIRINGEPISDEELAAAFE-RVEEAAGSL---D-----LISLTYF-----------------EV------LTAMAFLY-  132 (427)
T ss_pred             EEEEECCEECCHHHHHHHHH-HHHHHHCCC---C-----CCCCCHH-----------------HH------HHHHHHHH-
T ss_conf             17999999888999999999-999975236---6-----6787479-----------------99------99999999-


Q ss_pred             CCCCCCCEEEEEEEC-CCEEEEE-EEEECCCEEEEECCCC---CCCCCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHH
Q ss_conf             344565507998724-4114543-1010231465420133---22455213447665536787642013--430244789
Q gi|255764494|r  181 LDKKDARTVIVFDFG-GGTFDVS-LLEMGDGVFEVKATNG---DTFLGGEDFDSCLVEHICDTFKKENG--IDLKQDTLA  253 (652)
Q Consensus       181 ~~~~~~~~vlV~D~G-ggt~dvs-i~~~~~~~~~vl~~~g---d~~lGG~d~D~~l~~~~~~~~~~~~~--~d~~~~~~a  253 (652)
                       +.+.+--++|+-.| ||-+|.+ |+.   ..+.|+.+-|   -..||. .+-. |+.-=+.-|+...-  +.-...+.+
T Consensus       133 -F~~~~vD~aIlEVGLGGRlDATNVi~---p~vsvIT~I~lDH~~~LG~-tie~-IA~EKAGI~k~g~P~v~~~~~~p~a  206 (427)
T COG0285         133 -FAEAKVDVAILEVGLGGRLDATNVIE---PDVSVITSIGLDHTAFLGD-TLES-IAREKAGIIKAGKPAVIGEQQPPEA  206 (427)
T ss_pred             -HHHCCCCEEEEECCCCCCCCCHHCCC---CCEEEECCCCHHHHHHHCC-CHHH-HHHHHHCCCCCCCCEEECCCCCHHH
T ss_conf             -97689998999605566644322168---7668976647257888686-6999-9998640125799579888898789


Q ss_pred             HHHHHHHHHHHHHHCC
Q ss_conf             9999999998854115
Q gi|255764494|r  254 LQRLKEAAEKAKIELS  269 (652)
Q Consensus       254 ~~rL~~~~e~aK~~LS  269 (652)
                      +..+.+.|++....+.
T Consensus       207 ~~vi~~~a~~~~~~~~  222 (427)
T COG0285         207 LNVIAERAEELGAPLF  222 (427)
T ss_pred             HHHHHHHHHHCCCCEE
T ss_conf             9999999875189746


No 320
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.25  E-value=18  Score=14.69  Aligned_cols=36  Identities=22%  Similarity=0.247  Sum_probs=28.3

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|...+--|||.+--|+.+|.=.-+-+++||||.-
T Consensus       134 ~~p~~LSGGqkqRvaiA~aL~~~P~lliLDEPtagL  169 (273)
T PRK13647        134 KAPYHLSYGQKKRVAIAGVLAMEPDIIVLDEPMAYL  169 (273)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             793339998999999999998199999997976579


No 321
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.21  E-value=19  Score=14.46  Aligned_cols=36  Identities=22%  Similarity=0.178  Sum_probs=27.5

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|...+--|||.+--|..+|-=.-+=+++|||++-
T Consensus       138 ~~p~~LSGGqkQRvaiAraL~~~P~iLilDEPTs~L  173 (269)
T PRK13648        138 YEPNALSGGQKQRVAIASVLALNPSVIILDEATSML  173 (269)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf             896438999999999999997598999981875548


No 322
>pfam05378 Hydant_A_N Hydantoinase/oxoprolinase N-terminal region. This family is found at the N-terminus of the pfam01968 family.
Probab=33.12  E-value=26  Score=13.44  Aligned_cols=17  Identities=41%  Similarity=0.597  Sum_probs=13.0

Q ss_pred             EEEECCCCEEEEEEEEC
Q ss_conf             99804866069999989
Q gi|255764494|r    5 IGIDLGTTNSCVAIMDG   21 (652)
Q Consensus         5 iGIDlGtt~s~va~~~~   21 (652)
                      ||||.|-||+=+.++++
T Consensus         2 iGIDvGGTfTD~V~~d~   18 (175)
T pfam05378         2 IGIDVGGTFTDAVALDE   18 (175)
T ss_pred             EEEECCCCCEEEEEEEC
T ss_conf             58975757688999979


No 323
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport.  Other members of this system include the MetP permease and  the MetQ substrate binding protein.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.99  E-value=21  Score=14.15  Aligned_cols=37  Identities=24%  Similarity=0.212  Sum_probs=27.9

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8537788740257886344211222222221024788
Q gi|255764494|r  140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      =.-|.-++--|||.+--|-.+|.=.-+=|.+|||++-
T Consensus       135 ~~yP~eLSGGq~QRVaIARAL~~~P~lllaDEPTs~L  171 (233)
T cd03258         135 DAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSAL  171 (233)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             2696526778889999999983399899965976646


No 324
>PRK08223 hypothetical protein; Validated
Probab=32.93  E-value=26  Score=13.42  Aligned_cols=52  Identities=29%  Similarity=0.427  Sum_probs=30.9

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEE
Q ss_conf             3698537788740257886344211222222221024788886034456550799872441145
Q gi|255764494|r  137 KAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFD  200 (652)
Q Consensus       137 ~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~d  200 (652)
                      ++||-.--+|.-.-|..+-+||...|...+      +||.+.|      +..++||+=||-+|+
T Consensus       119 DvVvDg~DnF~~~tR~ll~~ac~~~giP~v------~~a~l~f------~gq~~vF~P~g~~f~  170 (287)
T PRK08223        119 DVYVDGLDFFVFDIRRLLFREAQARGIPAL------TAAPLGF------STAWLVFDPGGMSFD  170 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCEE------EECCCCC------CCEEEEECCCCCCHH
T ss_conf             999979667883189999999998599849------8315410------306999889997898


No 325
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=32.87  E-value=18  Score=14.68  Aligned_cols=36  Identities=22%  Similarity=0.332  Sum_probs=26.8

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|..++--|||.+.-|..++.=.-+=|++|||++-
T Consensus       147 ~~p~~LSGG~~QRv~iAraL~~~P~llllDEPtsgL  182 (258)
T PRK11701        147 DLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGL  182 (258)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             062214789999999999986499999985986568


No 326
>PRK04311 selenocysteine synthase; Provisional
Probab=32.71  E-value=20  Score=14.30  Aligned_cols=17  Identities=29%  Similarity=0.632  Sum_probs=11.1

Q ss_pred             EECCCCCCHHHHHHHHH
Q ss_conf             63078530567788654
Q gi|255764494|r  333 VLVGGMTRMPKIQQSVQ  349 (652)
Q Consensus       333 ~lvGGssriP~v~~~i~  349 (652)
                      +=+|||-|||-|-+.-.
T Consensus       178 vEIGGsFRiPdim~~sG  194 (465)
T PRK04311        178 VEIGGAFRIPDVMRQAG  194 (465)
T ss_pred             EEECCCCCCHHHHHHCC
T ss_conf             65267656278998659


No 327
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.63  E-value=27  Score=13.38  Aligned_cols=61  Identities=20%  Similarity=0.250  Sum_probs=38.2

Q ss_pred             EEEEEECCCCCCCHHHHHHHHH-HHCCCCCCCCCCCHHHHHHHHHCCCCCC-CEEEEEEECCCEEEE
Q ss_conf             3698537788740257886344-2112222222210247888860344565-507998724411454
Q gi|255764494|r  137 KAVITVPAYFNDAQRQATKDAG-RIAGLDVLRIINEPTAAALAYGLDKKDA-RTVIVFDFGGGTFDV  201 (652)
Q Consensus       137 ~~VitVP~~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAal~Y~~~~~~~-~~vlV~D~Gggt~dv  201 (652)
                      +.|.++|..+.    ..+.+|. +..|++.+..-||..|+..|-|.-+... --+++.-.|-|.+..
T Consensus        20 ~~vFGipG~~~----~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~N~   82 (572)
T PRK08979         20 KHIFGYPGGSV----LDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATNA   82 (572)
T ss_pred             CEEEECCCCCH----HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
T ss_conf             99997577137----9999998753898298118689999999999999799889998267379999


No 328
>PRK12578 acetyl-CoA acetyltransferase; Provisional
Probab=32.63  E-value=12  Score=15.90  Aligned_cols=54  Identities=19%  Similarity=0.143  Sum_probs=29.1

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             87199999999999999999983884733698537788740257886344211222
Q gi|255764494|r  109 QYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLD  164 (652)
Q Consensus       109 ~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~  164 (652)
                      ..++.|+.+.-++...+.|-- -...|+.+++.-..+....+- .-...+..+||.
T Consensus        18 ~~s~~eL~~eA~~~Al~dAgl-~~~dVD~v~~G~~~~~g~~~~-~~~~~a~~~Gl~   71 (385)
T PRK12578         18 DVSIQELAWESIKEALEDAGI-TQKDVDLVVIGSTAYRGVELY-PAPPVSEYSGLT   71 (385)
T ss_pred             CCCHHHHHHHHHHHHHHHHCC-CHHHCCEEEEECCCCCCCCCC-HHHHHHHHCCCC
T ss_conf             979999999999999998492-989959999945675552236-289999975998


No 329
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857    This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=32.51  E-value=25  Score=13.66  Aligned_cols=171  Identities=23%  Similarity=0.312  Sum_probs=77.4

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHH-----HH----CCCCCCCEEEEEEEC------CCEEEE
Q ss_conf             369853778874025788634421122222222102478888-----60----344565507998724------411454
Q gi|255764494|r  137 KAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALA-----YG----LDKKDARTVIVFDFG------GGTFDV  201 (652)
Q Consensus       137 ~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~-----Y~----~~~~~~~~vlV~D~G------ggt~dv  201 (652)
                      +|||++|-=.+..-+.-|+.    -|=+   +|-=||||+..     |+    |.+.-+.-+=+.|==      -.+++-
T Consensus        90 k~Iiv~PeKmS~eKv~VL~A----lGAE---ivrtPT~a~~d~PeSh~gVa~rL~~EiPga~KIlDQY~N~~NP~aHY~~  162 (527)
T TIGR01137        90 KCIIVLPEKMSEEKVDVLKA----LGAE---IVRTPTAAAFDSPESHIGVAKRLVREIPGAHKILDQYANPSNPLAHYDG  162 (527)
T ss_pred             EEEEECCCCCCHHHHHHHHH----HCCE---EEECCCCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf             39998687546147899998----1980---7787888788848652048885222788843352004788786101341


Q ss_pred             E---EEEECCC-----EEE-EECCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             3---1010231-----465-420133224552134476655367876420---134302447899999999998854115
Q gi|255764494|r  202 S---LLEMGDG-----VFE-VKATNGDTFLGGEDFDSCLVEHICDTFKKE---NGIDLKQDTLALQRLKEAAEKAKIELS  269 (652)
Q Consensus       202 s---i~~~~~~-----~~~-vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~---~~~d~~~~~~a~~rL~~~~e~aK~~LS  269 (652)
                      |   |.+-.+|     .+. +.|+.|.   ||. |. =+.+||.++-.-+   -|.|+..+--|      +    =+.|.
T Consensus       163 Tg~Ei~~q~EGlnlfdk~~~~VAg~GT---GGT-It-Gi~ryLK~~~~~~~~ivGaDP~GSila------~----pE~LN  227 (527)
T TIGR01137       163 TGPEILEQCEGLNLFDKLDMFVAGVGT---GGT-IT-GIARYLKDESNPKVRIVGADPEGSILA------Q----PEELN  227 (527)
T ss_pred             CHHHHHHHHCCCCHHCCCCEEEECCCC---CCH-HH-HHHHHHHHCCCCCEEEEEECCCCCEEC------C----CCCCC
T ss_conf             058999860573012121178850578---831-55-455654321389338998769853321------7----64655


Q ss_pred             CCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCC----CCHHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHH
Q ss_conf             565035863044346788721268731100001234----2000011001111010135631101466307853056778
Q gi|255764494|r  270 STSQTEINLPFISANSAGAQHLNMKLTRAQFERLVN----HLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQ  345 (652)
Q Consensus       270 ~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~----~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~  345 (652)
                      ....++..||++.+|+..     .-+.|.-..++++    +-|.-+..+|.    +         +=+||||||=+-.+-
T Consensus       228 ~t~~t~Y~VEGiGyDF~P-----~vlDR~v~D~w~k~~D~~SF~maRrLi~----e---------EGlLvGGS~GsAvva  289 (527)
T TIGR01137       228 KTGRTPYKVEGIGYDFIP-----TVLDRKVVDEWIKTDDKESFKMARRLIK----E---------EGLLVGGSSGSAVVA  289 (527)
T ss_pred             CCCCCCEEEEEECCCCCC-----CCCCCCCCCEEEEECCHHHHHHHHHHHH----H---------CCEEEECCHHHHHHH
T ss_conf             578983148762147768-----5237652544688088168999999987----4---------472640430358999


Q ss_pred             HH
Q ss_conf             86
Q gi|255764494|r  346 QS  347 (652)
Q Consensus       346 ~~  347 (652)
                      -+
T Consensus       290 al  291 (527)
T TIGR01137       290 AL  291 (527)
T ss_pred             HH
T ss_conf             99


No 330
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.46  E-value=19  Score=14.48  Aligned_cols=37  Identities=22%  Similarity=0.166  Sum_probs=27.8

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8537788740257886344211222222221024788
Q gi|255764494|r  140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      =.-|...+--|||.+--|+.+|-=.-+-+++||||+-
T Consensus       138 ~~~p~~LSGGqkQRvaiA~aLa~~P~iliLDEPTs~L  174 (273)
T PRK13632        138 KKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSML  174 (273)
T ss_pred             HCCCHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             4782009999999999999997199999980775569


No 331
>PRK06363 consensus
Probab=32.44  E-value=13  Score=15.64  Aligned_cols=52  Identities=21%  Similarity=0.148  Sum_probs=20.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-CC-CCCCCHHHHHHHHHHHCCCC
Q ss_conf             19999999999999999998388473369853-77-88740257886344211222
Q gi|255764494|r  111 SPSQISAIVLQKMKETAESFLGETVSKAVITV-PA-YFNDAQRQATKDAGRIAGLD  164 (652)
Q Consensus       111 ~peei~a~iL~~lk~~ae~~l~~~v~~~VitV-P~-~f~~~qR~a~~~Aa~~AGl~  164 (652)
                      ++.++....++.....|.- -...|+.+++.- .. .|.. |...-...+..+||.
T Consensus        21 s~~~L~~ea~~~Al~dAgl-~~~dID~v~~g~~~~~~~~~-~~~~~~~~a~~~Gl~   74 (387)
T PRK06363         21 SFRDLIVEAGIKAIEDANV-SGEDIDAMYVGNMSGGRFVG-QEHIGALIADYAGLN   74 (387)
T ss_pred             CHHHHHHHHHHHHHHHCCC-CHHHCCEEEEEECCCCCCCC-CCCHHHHHHHHCCCC
T ss_conf             9899999999999998097-98999999998257543446-130999999973998


No 332
>KOG2697 consensus
Probab=32.40  E-value=27  Score=13.36  Aligned_cols=20  Identities=10%  Similarity=0.222  Sum_probs=12.3

Q ss_pred             HHHHHHHCCCCCEEEEEECC
Q ss_conf             99885411556503586304
Q gi|255764494|r  261 AEKAKIELSSTSQTEINLPF  280 (652)
Q Consensus       261 ~e~aK~~LS~~~~~~i~i~~  280 (652)
                      .-.||..+-+..++-++|+.
T Consensus       221 VTAAKM~vQNd~~AlvsIDm  240 (446)
T KOG2697         221 VTAAKMIVQNDYEALVSIDM  240 (446)
T ss_pred             HHHHHHHEECCCCCEEEECC
T ss_conf             53535412246130478516


No 333
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids.  The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis.  YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein.  Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli.  The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=32.29  E-value=17  Score=14.84  Aligned_cols=36  Identities=17%  Similarity=0.248  Sum_probs=28.8

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|..++--|||.+--|..+++=..+-|++||||.-
T Consensus       129 ~~~~~LSgG~~qrv~iAraL~~~P~illlDEPt~GL  164 (232)
T cd03218         129 SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGV  164 (232)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             942559999999999999996699999988985688


No 334
>pfam03841 SelA L-seryl-tRNA selenium transferase.
Probab=32.16  E-value=27  Score=13.33  Aligned_cols=41  Identities=24%  Similarity=0.473  Sum_probs=23.1

Q ss_pred             CEEEEEEECCCEE-EEEEEEE--CC-------CEEEEECCCCCCCCCCHHH
Q ss_conf             5079987244114-5431010--23-------1465420133224552134
Q gi|255764494|r  187 RTVIVFDFGGGTF-DVSLLEM--GD-------GVFEVKATNGDTFLGGEDF  227 (652)
Q Consensus       187 ~~vlV~D~Gggt~-dvsi~~~--~~-------~~~~vl~~~gd~~lGG~d~  227 (652)
                      +..+++|+|.|++ |.+-..+  ++       .-..+...+||.-|||-.-
T Consensus       170 ~ip~i~DlGSG~l~d~~~~gl~~Ep~v~~~l~~GaDlV~FSGDKLLGGPQA  220 (367)
T pfam03841       170 GLPVYYDLGSGSLVDLSQYGLPKEPTVQELLALGVDLVSFSGDKLLGGPQA  220 (367)
T ss_pred             CCCEEEECCCCCEECCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCC
T ss_conf             996799758663112200179999989999973998899867645689853


No 335
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin.  In addition to DrrA, the complex includes an integral membrane protein called DrrB.  DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called  P-glycoprotein.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.07  E-value=18  Score=14.78  Aligned_cols=36  Identities=14%  Similarity=0.192  Sum_probs=28.5

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-+..++.-|||.+--|..+++=.-+-+++|||+..
T Consensus       127 ~~~~~LS~G~kqrv~ia~Al~~~P~lliLDEPt~gL  162 (220)
T cd03265         127 RLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGL  162 (220)
T ss_pred             CHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             704347999999999999985699989980886688


No 336
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein.  This group includes proteins similar to S. cerevisiae Ydr533c.  Ydr533c is upregulated in response to various stress conditions along with the heat shock family.  The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain.  Ydr533c protein is a homodimer.
Probab=31.93  E-value=27  Score=13.30  Aligned_cols=60  Identities=20%  Similarity=0.297  Sum_probs=39.1

Q ss_pred             HHCCCCCCHHCCCCCEEEEEEEECCCCCC------HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             10011110101356311014663078530------567788654101111111356531011111000223
Q gi|255764494|r  312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTR------MPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGV  376 (652)
Q Consensus       312 ~~~i~~~L~~a~~~~~~I~~V~lvGGssr------iP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~  376 (652)
                      ...++..+.-+.+.+++-+.|.+.||---      -+.++++|..+....     -|--+|+.|.|..+..
T Consensus        78 ~~~L~~t~~l~~v~~~~YdaVf~pGGhG~m~Dl~~~~~l~~ll~~~~~~g-----k~vaaVCHGpaaLl~~  143 (231)
T cd03147          78 WKKLKNIKKADEVNPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANG-----GVVAAVCHGPAILANL  143 (231)
T ss_pred             HHHHHCCCCHHHCCHHHCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC-----CEEEEECCHHHHHHHC
T ss_conf             99986768956889878259998898853032423999999999999759-----9799980688997616


No 337
>pfam00005 ABC_tran ABC transporter. ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Probab=31.88  E-value=22  Score=14.00  Aligned_cols=33  Identities=24%  Similarity=0.247  Sum_probs=24.2

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf             377887402578863442112222222210247
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTA  174 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptA  174 (652)
                      -|..++--|||.+.-|..+++=.-+-|++||||
T Consensus        87 ~~~~LSGG~~qrv~iAral~~~p~iLilDEPTs  119 (119)
T pfam00005        87 PVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA  119 (119)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             755499999999999999973999999708999


No 338
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=31.87  E-value=27  Score=13.30  Aligned_cols=16  Identities=13%  Similarity=0.179  Sum_probs=6.2

Q ss_pred             EECCCCCCCHHHHHHH
Q ss_conf             5377887402578863
Q gi|255764494|r  141 TVPAYFNDAQRQATKD  156 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~  156 (652)
                      ..|..++..|-..+++
T Consensus        96 GTPslL~~~~l~~ll~  111 (416)
T COG0635          96 GTPSLLSPEQLERLLK  111 (416)
T ss_pred             CCCCCCCHHHHHHHHH
T ss_conf             8326779999999999


No 339
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.82  E-value=28  Score=13.29  Aligned_cols=26  Identities=31%  Similarity=0.544  Sum_probs=15.1

Q ss_pred             EEEEEECCCCCCH--HHHHHHHHHCCCC
Q ss_conf             0146630785305--6778865410111
Q gi|255764494|r  329 IDEVVLVGGMTRM--PKIQQSVQDFFNK  354 (652)
Q Consensus       329 I~~V~lvGGssri--P~v~~~i~~~fg~  354 (652)
                      +++++|-|||-||  |-||+.+-+..|.
T Consensus       477 lNG~ElggGSiRIh~~eiQ~~vF~~lg~  504 (585)
T COG0173         477 LNGYELGGGSIRIHDPEIQEKVFEILGI  504 (585)
T ss_pred             ECCEEECCCEEEECCHHHHHHHHHHCCC
T ss_conf             6027513543640788999999998199


No 340
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=31.75  E-value=26  Score=13.43  Aligned_cols=30  Identities=33%  Similarity=0.369  Sum_probs=21.2

Q ss_pred             CCCCCHHHHHHHHHHHCCCC--CCCCCCCHHHHH
Q ss_conf             88740257886344211222--222221024788
Q gi|255764494|r  145 YFNDAQRQATKDAGRIAGLD--VLRIINEPTAAA  176 (652)
Q Consensus       145 ~f~~~qR~a~~~Aa~~AGl~--v~~li~EptAAa  176 (652)
                      .|+--||||+.-+  +|.+.  -+-|++|.|||-
T Consensus       148 lLSGGQRQalsL~--MAtl~~pkiLLLDEHTAAL  179 (263)
T COG1101         148 LLSGGQRQALSLL--MATLHPPKILLLDEHTAAL  179 (263)
T ss_pred             HCCCHHHHHHHHH--HHHCCCCCEEEECCHHHCC
T ss_conf             2365189999999--9854798488760112117


No 341
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=31.64  E-value=22  Score=13.99  Aligned_cols=36  Identities=25%  Similarity=0.273  Sum_probs=27.3

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -.|...+--|||.+.-|-.+|.=.-+=+++|||++-
T Consensus       148 ~~p~~LSGGq~QRv~IAraL~~~P~lLllDEPts~L  183 (257)
T PRK10619        148 KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSAL  183 (257)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             587558999999999999986399899976886658


No 342
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=31.52  E-value=22  Score=13.97  Aligned_cols=35  Identities=23%  Similarity=0.133  Sum_probs=26.0

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -|...+--|||.+.-|..++.=..+-|++|||++-
T Consensus       135 ~~~~LSGGqkQRv~iAraL~~~p~lllLDEPtsgL  169 (255)
T PRK11231        135 RLTELSGGQRQRAFLAMVLAQDTPVVLLDEPTTYL  169 (255)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             74529999999999999995399979983886448


No 343
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=31.49  E-value=19  Score=14.43  Aligned_cols=35  Identities=23%  Similarity=0.182  Sum_probs=25.8

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .|...+.-|||.+.-|..++.=.-+-|++|||++-
T Consensus       144 ~~~~LSGGq~QRv~iAraL~~~P~lLlLDEPts~L  178 (265)
T PRK10575        144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSAL  178 (265)
T ss_pred             CHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             83338999999999999875699989981776558


No 344
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt   The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export.  Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters.  A typical system is made of a conserved integral membrane and an ABC.  In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=31.44  E-value=22  Score=14.02  Aligned_cols=33  Identities=15%  Similarity=-0.013  Sum_probs=23.2

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             778874025788634421122222222102478
Q gi|255764494|r  143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      |..++--|||.+.-|..++.=.-+-+++|||++
T Consensus       140 ~~~LSgG~kqRl~iA~al~~~P~illLDEPt~g  172 (224)
T cd03220         140 VKTYSSGMKARLAFAIATALEPDILLIDEVLAV  172 (224)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             654699999999999999669999999188665


No 345
>TIGR01068 thioredoxin thioredoxin; InterPro: IPR005746 Thioredoxins , , ,  are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. TR-S_2 + NADPH + H^+ -> TR-(SH)_2 + NADP^+ (1) trx-S_2 + TR-(SH)_2 -> trx-(SH)_2 + TR-S_2 (2) Protein-S_2 + trx-(SH)_2 -> Protein-(SH)_2 + trx-S_2 (3) In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide (steps 1 and 2). Reduced thioredoxin then directly reduces the disulphide in the substrate protein (step 3) . Protein disulphide isomerase (PDI), a resident foldase of the endoplasmic recticulum, is a multi-functional protein that catalyses the formation and isomerisation of disulphide bonds during protein folding , . PDI contains 2 redox active domains, near the N- and C-termini, that are similar to thioredoxin: both contribute to disulphide isomerase activity, but are functionally non-equivalent . Interestingly, a mutant PDI, with all 4 of the active cysteines replaced by serine, displays a low but detectable level of disulphide isomerase activity . Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity . A number of endoplasmic reticulum proteins that differ from the PDI major isozyme contain 2 (ERp60, ERp5) or 3 (ERp72 ) thioredoxin domains; all of them seem to be PDIs. 3D-structures have been determined for a number of thioredoxins . The molecule has a doubly-wound alternating alpha/beta fold, consisting of a 5-stranded parallel beta-sheet core, enclosed by 4 alpha-helices. The active site disulphide is located at the N-terminus of helix 2 in a short segment that is separated from the rest of the helix by a kink caused by a conserved proline. The 4-membered disulphide ring is located on the surface of the protein. A flat hydrophobic surface lies adjacent to the disulphide, which presumably facilitates interaction with other proteins.   One invariant feature of all thioredoxins is a cis-proline located in a loop preceding beta-strand 4. This residue is positioned in van der Waals contact with the active site cysteines and is important both for stability and function . Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase . Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0006662 glycerol ether metabolic process, 0045454 cell redox homeostasis.
Probab=31.30  E-value=28  Score=13.23  Aligned_cols=25  Identities=36%  Similarity=0.630  Sum_probs=13.9

Q ss_pred             CCCCCCCCEEEEEECCCC---EEECHHHH
Q ss_conf             898625627999948998---99667898
Q gi|255764494|r   30 AEGTRTTPSMVGFTDEGE---RLVGQPAK   55 (652)
Q Consensus        30 ~~g~r~~PS~V~~~~~~~---~~vG~~A~   55 (652)
                      ..|=|.+||++-|. +|+   |.||..-+
T Consensus        63 ~ygi~SIPTl~lFK-~G~~V~~~vGa~pK   90 (101)
T TIGR01068        63 KYGIRSIPTLLLFK-NGKVVDRSVGALPK   90 (101)
T ss_pred             HCCCCCCCEEEEEC-CCEEEEEEECCCCH
T ss_conf             52854056377751-98252006135697


No 346
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=31.27  E-value=20  Score=14.26  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=26.3

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             7788740257886344211222222221024788
Q gi|255764494|r  143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      |...+--|||.+--|..++.=.-+=|++||||+-
T Consensus       129 ~~~LSGGq~Qrv~iAraL~~~P~lLlLDEPt~gL  162 (230)
T TIGR03410       129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGI  162 (230)
T ss_pred             HHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             1119999999999999996299889993852269


No 347
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function.  The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=30.96  E-value=26  Score=13.43  Aligned_cols=45  Identities=18%  Similarity=0.324  Sum_probs=26.6

Q ss_pred             HHHHCCCCCCHHCCCCCEEEEEE-EECCCCCCHHHHHHHHHHCCCC
Q ss_conf             01100111101013563110146-6307853056778865410111
Q gi|255764494|r  310 KTVEPCKKCLQDAGLSPSDIDEV-VLVGGMTRMPKIQQSVQDFFNK  354 (652)
Q Consensus       310 ~~~~~i~~~L~~a~~~~~~I~~V-~lvGGssriP~v~~~i~~~fg~  354 (652)
                      .+++-|..+|+.+|.+++||-.+ +.+-.....|.+.+...++|+.
T Consensus        48 ~~l~ni~~iL~~aG~~~~dvvk~tvyltd~~~~~~~~~v~~~~f~~   93 (119)
T cd06154          48 QCLEIIEAALAEAGASLEDVVRTRMYVTDIADFEAVGRAHGEVFGD   93 (119)
T ss_pred             HHHHHHHHHHHHCCCCHHHHEEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf             9999999999986998778156667856888999999999987699


No 348
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=30.95  E-value=19  Score=14.45  Aligned_cols=36  Identities=25%  Similarity=0.274  Sum_probs=26.9

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|..++--|||.+--|..++.=.-+-|++|||++-
T Consensus       129 ~~p~~LSGGqkQRvaiAraL~~~P~lLlLDEPtsgL  164 (257)
T PRK11247        129 EWPAALSGGQKQRVALARALIHRPRLLLLDEPLGAL  164 (257)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             694448999999999999984599999980987657


No 349
>PRK13328 pantothenate kinase; Reviewed
Probab=30.91  E-value=28  Score=13.18  Aligned_cols=21  Identities=24%  Similarity=0.211  Sum_probs=17.9

Q ss_pred             EEEEECCCCEEEEEEEECCEE
Q ss_conf             699804866069999989955
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNV   24 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~   24 (652)
                      ++=||.|||+.++++++++..
T Consensus         3 ~L~IDiGNT~ik~~~~~~~~~   23 (255)
T PRK13328          3 ILLIDAGNSRIKWAWADAGRP   23 (255)
T ss_pred             EEEEEECCCCEEEEEEECCEE
T ss_conf             999997624159999979987


No 350
>PTZ00107 hexokinase; Provisional
Probab=30.87  E-value=28  Score=13.18  Aligned_cols=29  Identities=31%  Similarity=0.634  Sum_probs=22.1

Q ss_pred             CCCCEEEEEEECCCEEEEEEEEEC-CCEEE
Q ss_conf             565507998724411454310102-31465
Q gi|255764494|r  184 KDARTVIVFDFGGGTFDVSLLEMG-DGVFE  212 (652)
Q Consensus       184 ~~~~~vlV~D~Gggt~dvsi~~~~-~~~~~  212 (652)
                      .+.+.++-+|+||..|-|..+.+. +|.++
T Consensus        93 ~E~G~fLALDLGGTNfRV~~V~L~G~g~~~  122 (485)
T PTZ00107         93 KEKGSYYAIDFGGSNFRAVRISIDGDGKME  122 (485)
T ss_pred             CEEEEEEEECCCCCCEEEEEEEEECCCCEE
T ss_conf             635799999248884799999995898436


No 351
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=30.86  E-value=21  Score=14.10  Aligned_cols=36  Identities=25%  Similarity=0.282  Sum_probs=27.1

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|..++--|||.+--|-.++.=.-+=|++|||++-
T Consensus       138 ~~p~~LSGGq~QRvaiAraL~~~P~iLllDEPTs~L  173 (248)
T PRK11264        138 SYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSAL  173 (248)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf             780108999988999876314799999987987658


No 352
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component.  The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.69  E-value=22  Score=14.08  Aligned_cols=34  Identities=24%  Similarity=0.282  Sum_probs=27.1

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             3778874025788634421122222222102478
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      -|..++--|||.+--|+.+++=.-+-+++|||+.
T Consensus       127 ~~~~LSgG~kqrv~ia~al~~~P~lliLDEPt~g  160 (211)
T cd03264         127 KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAG  160 (211)
T ss_pred             CHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             5445898899999999998289999999489767


No 353
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids.  RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family.  Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft.  RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%.  The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=30.53  E-value=20  Score=14.39  Aligned_cols=35  Identities=14%  Similarity=0.080  Sum_probs=26.1

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -|...+--|||.+.-|..++.=.-+-|++|||++-
T Consensus       136 ~~~~LSGGq~QRvaIAraL~~~P~iLlLDEPTs~L  170 (255)
T cd03236         136 NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYL  170 (255)
T ss_pred             CHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             85558999999999999736899999997987658


No 354
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system.  Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond.  Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond.  Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.46  E-value=26  Score=13.53  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=26.9

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8537788740257886344211222222221024788
Q gi|255764494|r  140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      =.-|...+--|||.+.-|-.+|.=.-+=|.+|||++-
T Consensus       139 ~~~~~~LSGGq~QRVaIARAL~~~P~ill~DEPts~L  175 (241)
T cd03256         139 YQRADQLSGGQQQRVAIARALMQQPKLILADEPVASL  175 (241)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             6784414802899999999985599989962876658


No 355
>pfam07066 Phage_Lacto_M3 Lactococcus phage M3 protein. This family consists of several Lactococcus phage middle-3 (M3) proteins of around 160 residues in length. The function of this family is unknown.
Probab=30.44  E-value=29  Score=13.13  Aligned_cols=13  Identities=46%  Similarity=0.744  Sum_probs=11.9

Q ss_pred             CCCEEEEECCCCE
Q ss_conf             9816998048660
Q gi|255764494|r    1 MSKVIGIDLGTTN   13 (652)
Q Consensus         1 Ms~viGIDlGtt~   13 (652)
                      |++++.|||-|.+
T Consensus         1 mkk~laidfstan   13 (162)
T pfam07066         1 MKKALAIDFSTAN   13 (162)
T ss_pred             CCCEEEEEEECCC
T ss_conf             9713888631256


No 356
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=30.30  E-value=22  Score=13.97  Aligned_cols=35  Identities=20%  Similarity=0.179  Sum_probs=27.9

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             53778874025788634421122222222102478
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      ..|...+--|||.+.-|..+|.=.-+-|++|||++
T Consensus       140 ~~~~~LSGGq~QRv~iAraL~~~P~iLlLDEPtsg  174 (269)
T PRK11831        140 LMPSELSGGMARRAALARAIALEPDLIMFDEPFVG  174 (269)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             88231899999999999999759999998287567


No 357
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=30.19  E-value=22  Score=13.98  Aligned_cols=36  Identities=22%  Similarity=0.170  Sum_probs=26.4

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      --|...+.-|||.+.-|..+|.=.-+-|++||||+-
T Consensus       139 ~~~~~LSGGq~QRv~iAraL~~~P~illLDEPts~L  174 (265)
T PRK10253        139 QSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWL  174 (265)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             881019988999999999985699989981887668


No 358
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2  has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=30.19  E-value=14  Score=15.54  Aligned_cols=55  Identities=16%  Similarity=-0.003  Sum_probs=33.0

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             871999999999999999999838847336985377887402578863442112222
Q gi|255764494|r  109 QYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDV  165 (652)
Q Consensus       109 ~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~v  165 (652)
                      ..+|.|+.+..++...+.+-- -...|+.++++....+.. +..--+.++..+|+..
T Consensus        13 ~~s~~eL~~~a~~~Al~dagi-~~~~ID~v~~g~~~~~~~-~~~~~~~~a~~~G~~~   67 (375)
T cd00829          13 DRSPLELAAEAARAALDDAGL-EPADIDAVVVGNAAGGRF-QSFPGALIAEYLGLLG   67 (375)
T ss_pred             CCCHHHHHHHHHHHHHHHHCC-CHHHHCEEEEEECCCCCC-CCHHHHHHHHHCCCCC
T ss_conf             969999999999999998391-989949999991287553-4769999999829999


No 359
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=30.15  E-value=29  Score=13.09  Aligned_cols=65  Identities=14%  Similarity=0.056  Sum_probs=40.1

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC-EEEEEEECCCEEEE
Q ss_conf             369853778874025788634421122222222102478888603445655-07998724411454
Q gi|255764494|r  137 KAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDAR-TVIVFDFGGGTFDV  201 (652)
Q Consensus       137 ~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~-~vlV~D~Gggt~dv  201 (652)
                      +.|.+||..+.-.=-.++..+-+..+++.+..-||-.|+..|-|.-+...+ -+++.-.|-|.+..
T Consensus        25 ~~vFGvPG~~~l~l~d~l~~~~~~~~i~~v~~rhE~~A~~aAdgYAR~tGk~gv~~~t~GpG~~Na   90 (588)
T CHL00099         25 KHIFGYPGGAILPIYDELYAWEKQGLIKHILVRHEQGAAHAADAYARSTGKVGVCFATSGPGATNL   90 (588)
T ss_pred             CEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
T ss_conf             899982786548999999843536896287129789999999999999699989998037789999


No 360
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=30.07  E-value=21  Score=14.17  Aligned_cols=36  Identities=14%  Similarity=0.153  Sum_probs=27.1

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|..++--|||.+.-|..++.=.-+-+++||||+-
T Consensus       149 ~~~~~LSgGq~Qrv~iAraL~~~P~lLlLDEPt~gL  184 (255)
T PRK11300        149 RQAGNLAYGQQRRLEIARCMVTQPRILMLDEPAAGL  184 (255)
T ss_pred             CCHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf             884667948899999999997299969981875469


No 361
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE).  The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE).  The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis.  The molecular mechanism of nickel uptake in many bacteria and most archaea is not known.  Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides.  The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=30.03  E-value=24  Score=13.76  Aligned_cols=35  Identities=34%  Similarity=0.299  Sum_probs=24.8

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -|...+.-|||.+--|..++.=.-+=|++|||++-
T Consensus       142 ~p~~LSGGq~QRv~iAraL~~~P~iLllDEPTs~L  176 (228)
T cd03257         142 YPHELSGGQRQRVAIARALALNPKLLIADEPTSAL  176 (228)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf             86327988999999821104799999994887647


No 362
>KOG1504 consensus
Probab=29.97  E-value=29  Score=13.07  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHH--HHCCCCCC----CCCCCCCCHHHHHH
Q ss_conf             466307853056778865--41011111----11356531011111
Q gi|255764494|r  331 EVVLVGGMTRMPKIQQSV--QDFFNKSP----SKGVNPDEVVAMGA  370 (652)
Q Consensus       331 ~V~lvGGssriP~v~~~i--~~~fg~~~----~~~~npdeaVa~GA  370 (652)
                      .|.-||-+-.+  +..++  ...||...    -+.++||.-+..-|
T Consensus       192 kvawiGD~NNv--lhs~mia~ak~gih~s~atPkg~e~d~div~~a  235 (346)
T KOG1504         192 KVAWIGDGNNV--LHSWMIAAAKFGIHFSCATPKGYEPDKDIVSKA  235 (346)
T ss_pred             EEEEECCCCHH--HHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHH
T ss_conf             79997265088--999999863314378852899988566899999


No 363
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids.  RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family.  Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft.  RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%.  The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=29.95  E-value=23  Score=13.95  Aligned_cols=34  Identities=15%  Similarity=0.134  Sum_probs=23.8

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             7788740257886344211222222221024788
Q gi|255764494|r  143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      |...+--|||.+.-|..+|.=.-+-|++||||+-
T Consensus       113 ~~~LSGGqkQRv~iA~aL~~~p~ilLLDEPts~L  146 (246)
T cd03237         113 VPELSGGELQRVAIAACLSKDADIYLLDEPSAYL  146 (246)
T ss_pred             HHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             0028985999999999984199999984898768


No 364
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea.  Only very few species lack representatives of the siderophore family transporters.  The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake.  The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA.  The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme.  A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=29.87  E-value=21  Score=14.15  Aligned_cols=35  Identities=20%  Similarity=0.175  Sum_probs=24.7

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -|...+--|||.+.-|-.++.=.-+-+++||||+.
T Consensus        94 ~~~~LSGGqkQrv~iA~aL~~~P~ililDEPts~L  128 (180)
T cd03214          94 PFNELSGGERQRVLLARALAQEPPILLLDEPTSHL  128 (180)
T ss_pred             CHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf             91037999999999999998689647885875447


No 365
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP.  Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.72  E-value=21  Score=14.22  Aligned_cols=36  Identities=22%  Similarity=0.285  Sum_probs=24.5

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      --|...+--|||.+--|-.++.=..+=|++||||+-
T Consensus       124 ~~p~~LSGGqkQRvaiARAL~~~P~ilLlDEPts~L  159 (211)
T cd03298         124 RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAAL  159 (211)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             894558989999999999986599999971887655


No 366
>cd03290 ABCC_SUR1_N The SUR domain 1.  The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains.  Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel.  Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism.  It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=29.67  E-value=25  Score=13.58  Aligned_cols=34  Identities=18%  Similarity=0.152  Sum_probs=21.4

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             7788740257886344211222222221024788
Q gi|255764494|r  143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      +..++.-|||.+--|-.++-=..+-+++|||+|-
T Consensus       138 g~~LSGGQ~QRi~iARal~~~~~illlDEptsaL  171 (218)
T cd03290         138 GINLSGGQRQRICVARALYQNTNIVFLDDPFSAL  171 (218)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             8877989999999999984489999998965578


No 367
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=29.64  E-value=25  Score=13.58  Aligned_cols=36  Identities=25%  Similarity=0.254  Sum_probs=26.7

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      ..|.-++--|||.+.-|-.++.=.-+=+.+|||+|-
T Consensus       150 ryP~eLSGGq~QRv~IArAL~~~P~lLi~DEPTsaL  185 (327)
T PRK11308        150 RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSAL  185 (327)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             576447999999999999984289899984786546


No 368
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=29.63  E-value=29  Score=13.11  Aligned_cols=37  Identities=30%  Similarity=0.195  Sum_probs=31.7

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8537788740257886344211222222221024788
Q gi|255764494|r  140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      =..|--|+--|||.+.-|..+|.=.-+-+.+|||.|.
T Consensus       149 ~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaL  185 (539)
T COG1123         149 DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTAL  185 (539)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             2487226704999999999983799989977985410


No 369
>pfam00195 Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain. The C-terminal domain of Chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in this N-terminal domain.
Probab=29.53  E-value=24  Score=13.79  Aligned_cols=62  Identities=19%  Similarity=0.268  Sum_probs=42.0

Q ss_pred             HHHCCCCCCHHCCCCCEEEEEEEECCCC-CCHHHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHH
Q ss_conf             1100111101013563110146630785-3056778865410111111---135653101111100
Q gi|255764494|r  311 TVEPCKKCLQDAGLSPSDIDEVVLVGGM-TRMPKIQQSVQDFFNKSPS---KGVNPDEVVAMGAAI  372 (652)
Q Consensus       311 ~~~~i~~~L~~a~~~~~~I~~V~lvGGs-sriP~v~~~i~~~fg~~~~---~~~npdeaVa~GAA~  372 (652)
                      ..+.+.++|+++|+.++||+.++.|-=+ ...|.+--.|.+.+|-.+.   ..++..=|.+-.+++
T Consensus       106 a~~Aa~~AL~~aG~~~~dIthlv~vt~TG~~~Pg~d~~l~~~LGL~~~v~R~~i~~~GC~gg~~gL  171 (228)
T pfam00195       106 GKEAALKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRVMLYQQGCFAGGTVL  171 (228)
T ss_pred             HHHHHHHHHHHHCCCHHHCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCHHEEEECCCCHHHHHHH
T ss_conf             999999999995889889999999947999887478999998298987211141145416489999


No 370
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=29.52  E-value=24  Score=13.72  Aligned_cols=34  Identities=12%  Similarity=0.190  Sum_probs=26.0

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             7788740257886344211222222221024788
Q gi|255764494|r  143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      |..++--|||.+.-|..++.=.-+-|++|||++.
T Consensus       135 ~~~LSgG~~Qrv~iAraL~~~P~lLlLDEPt~gL  168 (237)
T PRK11614        135 AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL  168 (237)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             2348998859999999985699999995975579


No 371
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup.  This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.   ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.52  E-value=26  Score=13.47  Aligned_cols=36  Identities=25%  Similarity=0.284  Sum_probs=26.9

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      --|...+--|||.+.-|..++.=.-+-+++|||++-
T Consensus       126 ~~~~~LSGG~kQrv~iAraL~~~P~illlDEPt~gL  161 (213)
T cd03259         126 RYPHELSGGQQQRVALARALAREPSLLLLDEPLSAL  161 (213)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf             770338989999999987622799999983986437


No 372
>PRK11178 uridine phosphorylase; Provisional
Probab=29.41  E-value=29  Score=13.09  Aligned_cols=28  Identities=25%  Similarity=0.496  Sum_probs=17.1

Q ss_pred             CCCCEEE---EEEEECCCCCCHHHHHHHHHH
Q ss_conf             3563110---146630785305677886541
Q gi|255764494|r  323 GLSPSDI---DEVVLVGGMTRMPKIQQSVQD  350 (652)
Q Consensus       323 ~~~~~~I---~~V~lvGGssriP~v~~~i~~  350 (652)
                      +++++||   +.|+|+|-.-|...|.+.+.+
T Consensus         8 ~~~~~di~~a~~vil~GDP~Rv~~iA~~ld~   38 (251)
T PRK11178          8 GLTKNDLQGATLAIVPGDPERVEKIAELMDN   38 (251)
T ss_pred             CCCHHHCCCCCEEEECCCHHHHHHHHHHCCC
T ss_conf             7884442688889967998999999996189


No 373
>PRK04262 hypothetical protein; Provisional
Probab=29.15  E-value=25  Score=13.57  Aligned_cols=44  Identities=18%  Similarity=0.312  Sum_probs=33.6

Q ss_pred             HHHHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf             00011001111010135631101466307853056778865410111
Q gi|255764494|r  308 IQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNK  354 (652)
Q Consensus       308 ~~~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~~~i~~~fg~  354 (652)
                      +..+...++++|++++++++|||.+++--...||+   +.+.+.+|.
T Consensus       208 ~~~~~~~~~~~l~~~g~~~~did~~v~HQAn~rii---~~~~k~Lgi  251 (346)
T PRK04262        208 FKHIISAAKGLMEKLGTKPSDYDYAVFHQPNGKFP---LRAAKMLGF  251 (346)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHCCEEECCCCCHHHH---HHHHHHCCC
T ss_conf             99999999999998299978858895167657899---999998299


No 374
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR).  DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=29.13  E-value=22  Score=14.00  Aligned_cols=30  Identities=20%  Similarity=0.304  Sum_probs=24.0

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             874025788634421122222222102478
Q gi|255764494|r  146 FNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       146 f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      .+--|||.+--|..++.=..+-+++|||++
T Consensus       112 LSgGqrqRv~iA~aL~~~P~illlDEPTsg  141 (194)
T cd03213         112 LSGGERKRVSIALELVSNPSLLFLDEPTSG  141 (194)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             888999999999999639988999489878


No 375
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=29.09  E-value=30  Score=12.97  Aligned_cols=52  Identities=10%  Similarity=0.114  Sum_probs=30.8

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCC-CCCCHHHHHHHHHHHCCCC
Q ss_conf             58719999999999999999998388473369853--778-8740257886344211222
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAY-FNDAQRQATKDAGRIAGLD  164 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~-f~~~qR~a~~~Aa~~AGl~  164 (652)
                      +.++|.+|.+..++.+.+.+. .-...|+++++.+  |.. -....|++    +-.|||.
T Consensus        33 ~~~~~~~L~a~~ik~~l~r~~-i~p~~Id~Vi~G~v~~~~~g~n~AR~a----aL~aGlp   87 (436)
T PRK08963         33 HGVPAVDLGKMVVGELLARSE-IDPKLIEQLVFGQVVQMPEAPNIAREI----VLGTGMN   87 (436)
T ss_pred             CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCCCCCHHHHHH----HHHCCCC
T ss_conf             889989999999999999829-898999989998367567677299999----9975999


No 376
>KOG2912 consensus
Probab=29.08  E-value=18  Score=14.61  Aligned_cols=14  Identities=29%  Similarity=0.584  Sum_probs=8.3

Q ss_pred             CCCEEE--EEEECCCE
Q ss_conf             655079--98724411
Q gi|255764494|r  185 DARTVI--VFDFGGGT  198 (652)
Q Consensus       185 ~~~~vl--V~D~Gggt  198 (652)
                      .++..+  =+|+|-|+
T Consensus        98 ~~k~~i~~GiDIgtga  113 (419)
T KOG2912          98 SDKSTIRRGIDIGTGA  113 (419)
T ss_pred             CCCCCEEEEEECCCCH
T ss_conf             7876166302026753


No 377
>PRK11636 mrcA peptidoglycan synthetase; Provisional
Probab=29.06  E-value=30  Score=12.96  Aligned_cols=41  Identities=24%  Similarity=0.468  Sum_probs=28.8

Q ss_pred             EEECHHHHHHHHHHHH---------HHHHHHHHCCCCCEE----------EEEECCCCCC
Q ss_conf             5871999999999999---------999999838847336----------9853778874
Q gi|255764494|r  108 KQYSPSQISAIVLQKM---------KETAESFLGETVSKA----------VITVPAYFND  148 (652)
Q Consensus       108 ~~~~peei~a~iL~~l---------k~~ae~~l~~~v~~~----------VitVP~~f~~  148 (652)
                      +.||-+||+.++|+.+         ...|+.|+|.++.+.          .+--|..|++
T Consensus       152 ~~~sK~eILe~YLN~iyfG~~ayGV~aAA~~YFgK~~~eLtl~EaA~LAgl~qaPs~y~P  211 (850)
T PRK11636        152 QLLTKDEILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLSEMAVIAGLPKAPSTFNP  211 (850)
T ss_pred             HHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf             865999999998545367896288999999986888010999999999844679877896


No 378
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.92  E-value=24  Score=13.78  Aligned_cols=36  Identities=22%  Similarity=0.219  Sum_probs=26.9

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      --|...+--|||.+--|+.+|.=.-+=+++||||.-
T Consensus       141 ~~p~~LSGGqkqRvaiA~aLa~~P~iLlLDEPTsgL  176 (286)
T PRK13641        141 KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGL  176 (286)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             291329999999999999997499999973973438


No 379
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein.  In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor.  This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export.  The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD).  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.91  E-value=25  Score=13.64  Aligned_cols=36  Identities=17%  Similarity=0.119  Sum_probs=24.2

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-+..++.-|||.+--|-.+..=..+-+++||||+-
T Consensus       135 ~~g~~LSgGq~Qri~lARal~~~~~illlDEpts~L  170 (229)
T cd03254         135 ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNI  170 (229)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             786449999999999999995189989998977789


No 380
>pfam02543 CmcH_NodU Carbamoyltransferase. This family consists of NodU from Rhizobium and CmcH from Nocardia lactamdurans. NodU a Rhizobium nodulation protein involved in the synthesis of nodulation factors has 6-O-carbamoyltransferase-like activity. CmcH is involved in cephamycin (antibiotic) biosynthesis and has 3-hydroxymethylcephem carbamoyltransferase activity, EC:2.1.3.7 catalysing the reaction: Carbamoyl phosphate + 3-hydroxymethylceph-3-EM-4-carboxylate <= phosphate + 3-carbamoyloxymethylcephem.
Probab=28.84  E-value=18  Score=14.68  Aligned_cols=48  Identities=21%  Similarity=0.129  Sum_probs=29.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHCCC-CCCCCCCC-CCCHHHHHHHHCCCCCC
Q ss_conf             46630785305677886541011-11111356-53101111100022346
Q gi|255764494|r  331 EVVLVGGMTRMPKIQQSVQDFFN-KSPSKGVN-PDEVVAMGAAIQAGVLQ  378 (652)
Q Consensus       331 ~V~lvGGssriP~v~~~i~~~fg-~~~~~~~n-pdeaVa~GAA~~a~~ls  378 (652)
                      .+.|.||...-=..-..|.+..+ +.+...-+ .|.-.|.|||+++....
T Consensus       166 nlclaGGvaLN~~aN~~i~~~~~~~~ifV~Pa~~D~G~aiGAA~~~~~~~  215 (360)
T pfam02543       166 NLCIAGGVALNVKWNSKLRRRGLFDDVWVPPAMNDSGSALGAALLAKVQL  215 (360)
T ss_pred             EEEEECHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             18970709999999998886177766031789885156799999999985


No 381
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=28.62  E-value=25  Score=13.59  Aligned_cols=32  Identities=13%  Similarity=0.093  Sum_probs=21.9

Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             88740257886344211222222221024788
Q gi|255764494|r  145 YFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       145 ~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .++.-|||.+.-|..++.=.-+-|++|||++-
T Consensus       150 ~LSGGqkqRv~iaral~~~P~iLiLDEPTsgL  181 (252)
T CHL00131        150 GFSGGEKKRNEILQMALLDSKLAILDETDSGL  181 (252)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             57899999999999996399999997987669


No 382
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids.  RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family.  Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft.  RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%.  The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=28.61  E-value=26  Score=13.54  Aligned_cols=31  Identities=16%  Similarity=0.200  Sum_probs=23.4

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8740257886344211222222221024788
Q gi|255764494|r  146 FNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       146 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .+.-|||.+.-|..++.=..+-|++||||+-
T Consensus        72 LSGGqrQRv~iAral~~~p~lllLDEPts~L  102 (177)
T cd03222          72 LSGGELQRVAIAAALLRNATFYLFDEPSAYL  102 (177)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             7989999999999982399999974886538


No 383
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=28.53  E-value=22  Score=14.10  Aligned_cols=36  Identities=17%  Similarity=0.148  Sum_probs=26.2

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      ..|...+.-|||.+.-|..+|.=.-+=|++||||+-
T Consensus       148 ~~~~~LSGGqkQRv~IArAL~~~P~iLllDEPta~L  183 (262)
T PRK09984        148 QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASL  183 (262)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             985348999999999999997199999983886779


No 384
>PRK13542 consensus
Probab=28.52  E-value=25  Score=13.66  Aligned_cols=35  Identities=17%  Similarity=0.194  Sum_probs=21.3

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             53778874025788634421122222222102478
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      .-+..++.-|||.+.-|+.++.=..+-|++||||.
T Consensus       143 ~~~~~LSgGqrqRv~lA~al~~~p~illLDEPtag  177 (224)
T PRK13542        143 APARTLSQGQRRRVALARLALTPRALWLLDEPLTS  177 (224)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             88124999999999999998079988997385354


No 385
>KOG1159 consensus
Probab=28.42  E-value=31  Score=12.90  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=10.8

Q ss_pred             EEEEEEECCCEEEEEEEEECCC-EEEEECC
Q ss_conf             0799872441145431010231-4654201
Q gi|255764494|r  188 TVIVFDFGGGTFDVSLLEMGDG-VFEVKAT  216 (652)
Q Consensus       188 ~vlV~D~Gggt~dvsi~~~~~~-~~~vl~~  216 (652)
                      ..+.||+-.     |-.++..| ++.++-.
T Consensus       217 R~~~F~i~~-----s~~~~epGDvl~l~P~  241 (574)
T KOG1159         217 RLFEFDIPD-----SYEEFEPGDVLSLLPS  241 (574)
T ss_pred             EEEEEECCC-----CCCCCCCCCEEEEECC
T ss_conf             589985588-----6553268877998158


No 386
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.02  E-value=28  Score=13.23  Aligned_cols=35  Identities=14%  Similarity=0.372  Sum_probs=24.5

Q ss_pred             CCCCCCCCCCCHHEECCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf             02234675221000023566532223342024663389811
Q gi|255764494|r  373 QAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTI  413 (652)
Q Consensus       373 ~a~~ls~~~~~~~~~dv~p~slgie~~~~~~~~ii~~~~~i  413 (652)
                      -+.++.|.++-+.++.++||+|...-      .++|.++.+
T Consensus       193 GGPIv~P~~~~~~ltPI~PhsL~~Rp------lVl~~~s~I  227 (290)
T PRK01911        193 GGPIIVPHSNNFVITPIAPHSLNVRP------LVIPDDTEI  227 (290)
T ss_pred             CCCEECCCCCCEEEEECCCCCCCCCC------EEECCCCEE
T ss_conf             99555698760899755766467998------898999879


No 387
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=28.01  E-value=26  Score=13.52  Aligned_cols=37  Identities=14%  Similarity=0.130  Sum_probs=25.1

Q ss_pred             EEECC-CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             85377-88740257886344211222222221024788
Q gi|255764494|r  140 ITVPA-YFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       140 itVP~-~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      +.-|+ ..+.-|||.+--|-.++.=..+-|++|||++-
T Consensus       131 ~~~~~~~LSGGqkQRv~iARaL~~~p~iLllDEPts~L  168 (225)
T PRK10247        131 LTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSAL  168 (225)
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             61881118999999999999986099999995976668


No 388
>cd03221 ABCF_EF-3 ABCF_EF-3  Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth.  EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site.  The reaction requires ATP hydrolysis.  EF-3 contains two ATP nucleotide binding sequence (NBS) motifs.  NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=27.85  E-value=32  Score=12.82  Aligned_cols=32  Identities=16%  Similarity=0.159  Sum_probs=24.2

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             78874025788634421122222222102478
Q gi|255764494|r  144 AYFNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       144 ~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      +.++.-|||.+.-|..++.=..+-+++|||+.
T Consensus        69 ~QLSgGqkqr~~la~al~~~p~iliLDEPt~~  100 (144)
T cd03221          69 EQLSGGEKMRLALAKLLLENPNLLLLDEPTNH  100 (144)
T ss_pred             HHCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             00799999999999997259989999577555


No 389
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake.  NatB possess six putative membrane spanning regions at its C-terminus.  In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane.  The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system.  Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=27.85  E-value=29  Score=13.12  Aligned_cols=36  Identities=19%  Similarity=0.182  Sum_probs=27.8

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|..++.-|||.+.-|..+++=.-+-+++|||+.-
T Consensus       132 ~~~~~LS~G~kqrv~la~al~~~P~lliLDEPt~gL  167 (218)
T cd03266         132 RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGL  167 (218)
T ss_pred             CCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             443227826889999999986699899997987676


No 390
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=27.69  E-value=22  Score=13.97  Aligned_cols=36  Identities=31%  Similarity=0.224  Sum_probs=27.0

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      ..|.-++--|||.+.-|..++.=.-+=+.+|||+|-
T Consensus       149 ~yP~eLSGGq~QRV~IArAL~~~P~lLIaDEPTsaL  184 (327)
T PRK11022        149 VYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTAL  184 (327)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf             285546999999999999997099999983887657


No 391
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.66  E-value=22  Score=14.01  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=23.8

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      --|...+.-|||.+--|-.++.=.-+-|++|||+|-
T Consensus       127 ~~P~~LSGGq~QRVaiARAL~~~P~llLlDEP~saL  162 (214)
T cd03297         127 RYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL  162 (214)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             897779929999999999987199999980887666


No 392
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids.  The  E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=27.61  E-value=23  Score=13.84  Aligned_cols=35  Identities=14%  Similarity=0.232  Sum_probs=26.1

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -|..++--|||.+.-|..++.=.-+-|++||||+-
T Consensus       129 ~~~~LSgG~~Qrv~iAraL~~~P~lllLDEPt~gL  163 (222)
T cd03224         129 LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL  163 (222)
T ss_pred             CHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             45448999999999999996499999993865479


No 393
>PRK05790 acetyl-CoA acetyltransferase; Provisional
Probab=27.38  E-value=22  Score=13.96  Aligned_cols=55  Identities=25%  Similarity=0.277  Sum_probs=33.2

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             587199999999999999999983884733698537788740257886344211222
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLD  164 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~  164 (652)
                      +.++|++|.+..++.+.+.+. .-...|.++++..=......+ ..-+.++..|||.
T Consensus        22 ~~~~~~~L~~~ai~~~l~r~g-i~~~~Id~vi~G~~~~~g~g~-n~aR~~~l~aGlp   76 (393)
T PRK05790         22 KDVSAVELGAIVIKAALERAG-VPPEQVDEVIMGQVLQAGAGQ-NPARQAAIKAGLP   76 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCCCCC-HHHHHHHHHCCCC
T ss_conf             889999999999999999829-898999989999336566555-4999999967999


No 394
>PRK06689 consensus
Probab=27.37  E-value=32  Score=12.76  Aligned_cols=53  Identities=19%  Similarity=0.320  Sum_probs=30.7

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--ECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             5871999999999999999999838847336985--37788740257886344211222
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVIT--VPAYFNDAQRQATKDAGRIAGLD  164 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~Vit--VP~~f~~~qR~a~~~Aa~~AGl~  164 (652)
                      +.++|++|.+..++.+.+... .-...|+++++.  +|.-  + +-.--|.|+-.|||.
T Consensus        22 ~~~~~~~L~a~~i~~~l~r~g-i~p~~Id~vi~G~~~~~g--~-~~n~AR~aaL~aGlp   76 (391)
T PRK06689         22 KNVTPVELAVPVLQEAVKRGG-VEPHEVDEVILGHCIQRT--D-EANTARTAALAAGFP   76 (391)
T ss_pred             CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCC--C-CCCHHHHHHHHCCCC
T ss_conf             889889999999999998749-997998989998066766--6-660999999976999


No 395
>KOG1394 consensus
Probab=27.29  E-value=16  Score=15.15  Aligned_cols=45  Identities=31%  Similarity=0.460  Sum_probs=31.1

Q ss_pred             HHHHCCCCCCHHCCCCCEEEEEEEECCCCCCHHHHH--HHHHHCCCC
Q ss_conf             011001111010135631101466307853056778--865410111
Q gi|255764494|r  310 KTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQ--QSVQDFFNK  354 (652)
Q Consensus       310 ~~~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~v~--~~i~~~fg~  354 (652)
                      ...-.++++|++|++.|+||+.|-----||-.--..  +.|...|+.
T Consensus       302 Ga~~am~raL~~Agl~pe~i~YvNAHATST~~GD~aE~~Ai~~vf~~  348 (440)
T KOG1394         302 GAVLAMERALKDAGLSPEDIDYVNAHATSTPLGDAAEAEAIKRVFGE  348 (440)
T ss_pred             HHHHHHHHHHHHCCCCHHHCCEEECCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             58999999998749995655705303335767308999999998414


No 396
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=27.26  E-value=23  Score=13.87  Aligned_cols=36  Identities=17%  Similarity=0.262  Sum_probs=27.3

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      ..|..++--|||.+.-|..++.=.-+-|++||||+-
T Consensus       133 ~~~~~LSgG~kqrv~iAraL~~~P~illLDEPt~gL  168 (241)
T PRK10895        133 SMGQSLSGGERRRVEIARALAANPKFILLDEPFAGV  168 (241)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             106668988899999999996699889995875479


No 397
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=27.21  E-value=27  Score=13.35  Aligned_cols=37  Identities=24%  Similarity=0.218  Sum_probs=27.9

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8537788740257886344211222222221024788
Q gi|255764494|r  140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -.-|..++--|||.+.-|..+|.=.-+-+.+|||++.
T Consensus       163 ~r~p~~LSGGqrQRV~IA~ALa~~P~lLIlDEPTs~L  199 (623)
T PRK10261        163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTAL  199 (623)
T ss_pred             HCCCHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             3281113699999999999874188658855774343


No 398
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=27.15  E-value=17  Score=14.90  Aligned_cols=50  Identities=20%  Similarity=0.135  Sum_probs=27.2

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCCCC-CCHHHHHHHHHHH
Q ss_conf             719999999999999999998388473369853--77887-4025788634421
Q gi|255764494|r  110 YSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAYFN-DAQRQATKDAGRI  160 (652)
Q Consensus       110 ~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~f~-~~qR~a~~~Aa~~  160 (652)
                      ..+.|+.+..++.+.+.+.- -...|+.+|+..  |.... ...|++.+.|.-.
T Consensus        21 ~~a~eL~~~ai~~al~~agi-~~~~Id~vi~G~~~~~g~g~n~ar~~~l~ag~~   73 (393)
T cd00826          21 DLAHEAGAKAIAAALEPAGV-AAGAVEEACLGQVLGAGEGQNCAQQAAMHAGGL   73 (393)
T ss_pred             CCHHHHHHHHHHHHHHHHCC-CHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCC
T ss_conf             99999999999999998296-989989899992587555541999999975999


No 399
>pfam02803 Thiolase_C Thiolase, C-terminal domain. Thiolase is reported to be structurally related to beta-ketoacyl synthase (pfam00109), and also chalcone synthase.
Probab=27.06  E-value=19  Score=14.46  Aligned_cols=28  Identities=29%  Similarity=0.366  Sum_probs=18.9

Q ss_pred             HHCCCCCCHHCCCCCEEEEEEEECCCCC
Q ss_conf             1001111010135631101466307853
Q gi|255764494|r  312 VEPCKKCLQDAGLSPSDIDEVVLVGGMT  339 (652)
Q Consensus       312 ~~~i~~~L~~a~~~~~~I~~V~lvGGss  339 (652)
                      ...++++|++++++.+|||.+++-=-.+
T Consensus        25 ~~A~~~lL~r~gl~~~Did~~EinEAFA   52 (123)
T pfam02803        25 AYAIPKALKKAGLTVNDIDLFEINEAFA   52 (123)
T ss_pred             HHHHHHHHHHCCCCHHHCCEEEECHHHH
T ss_conf             9999999998299855466456414567


No 400
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=27.01  E-value=26  Score=13.52  Aligned_cols=37  Identities=30%  Similarity=0.231  Sum_probs=27.6

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8537788740257886344211222222221024788
Q gi|255764494|r  140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -..|..++--|||.+.-|-.++.=.-+=+.+|||+|-
T Consensus       156 ~~yP~eLSGGq~QRV~IArAL~~~P~lLI~DEPTsaL  192 (330)
T PRK09473        156 KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTAL  192 (330)
T ss_pred             HCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             3481533988999999999997099999973875547


No 401
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=26.91  E-value=25  Score=13.58  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=26.6

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8537788740257886344211222222221024788
Q gi|255764494|r  140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -.-|..++--|||.+.-|..+|-=.-+=+++||||+-
T Consensus       163 ~~~~~~LSgGqkQrv~IA~aL~~~P~lLilDEPTa~L  199 (520)
T TIGR03269       163 THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTL  199 (520)
T ss_pred             CCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             0073559999978899999984599899970763357


No 402
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=26.78  E-value=25  Score=13.66  Aligned_cols=36  Identities=25%  Similarity=0.192  Sum_probs=27.5

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|...+--|||.+--|..+|.=.-+-|++|||++-
T Consensus       124 ~~p~~LSGGqkQRVaiArAL~~~P~iLllDEPt~~L  159 (255)
T PRK11248        124 RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL  159 (255)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             893349999999999999997299999980887779


No 403
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=26.70  E-value=25  Score=13.56  Aligned_cols=33  Identities=21%  Similarity=0.164  Sum_probs=23.4

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             778874025788634421122222222102478
Q gi|255764494|r  143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      |..++.-|||.+.-|..++.=..+-+++|||++
T Consensus       127 ~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~  159 (204)
T PRK13538        127 ARQLSAGQQRRVALARLWLTRAPLWILDEPFTA  159 (204)
T ss_pred             HHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             224899999999999999609998999788657


No 404
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=26.65  E-value=27  Score=13.33  Aligned_cols=36  Identities=19%  Similarity=0.061  Sum_probs=25.6

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|...+.-|+|.+--|..+|.=..+=+++|||++-
T Consensus       136 ~~P~qLSGGq~QRvaiArAL~~~P~lLilDEPTs~L  171 (254)
T PRK10418        136 LYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDL  171 (254)
T ss_pred             HCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             192634879999999999985499989855875437


No 405
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively.  Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP.  HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM.  The two HisP subunits form a homodimer within the complex.  The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems.  All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria.  The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=26.63  E-value=28  Score=13.28  Aligned_cols=37  Identities=27%  Similarity=0.261  Sum_probs=25.8

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8537788740257886344211222222221024788
Q gi|255764494|r  140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      =.-|...+--|+|.+--|-.+|.=.-+=|.+|||++-
T Consensus       130 ~~~P~~LSGGqqQRVAIARALa~~P~ilL~DEPts~L  166 (213)
T cd03262         130 DAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSAL  166 (213)
T ss_pred             CCCHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf             4994446929999999999963799999970888877


No 406
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion.  Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins.  Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=26.61  E-value=32  Score=12.81  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=22.1

Q ss_pred             ECCCCCCCHHHHHHHHHHHC-CCCC-CCCCCCHHHHH
Q ss_conf             37788740257886344211-2222-22221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIA-GLDV-LRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~A-Gl~v-~~li~EptAAa  176 (652)
                      -|..++--|||.+.-|..++ ..+. +-+++||||+-
T Consensus       134 ~~~~LSGGq~QRv~iAraL~~~~~~~lliLDEPTsgL  170 (226)
T cd03270         134 SAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGL  170 (226)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf             3786899999999999999738987168832873337


No 407
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase; InterPro: IPR004639   Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin .   The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA.   The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III.   Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) .   This entry represents glutamate-1-semialdehyde (GSA) aminotransferase (5.4.3.8 from EC), which catalyse a transamination reaction to produce 5-aminoaevulinic acid during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme has a high degree of similarity to amino acid transaminases, and is classed as a class III aminotransferase.; GO: 0042286 glutamate-1-semialdehyde 21-aminomutase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=26.57  E-value=30  Score=13.01  Aligned_cols=49  Identities=27%  Similarity=0.415  Sum_probs=23.1

Q ss_pred             CCC--CCCCCCCCHHHH---H--HHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCE
Q ss_conf             122--222222102478---8--8860344565507998724411454310102314
Q gi|255764494|r  161 AGL--DVLRIINEPTAA---A--LAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGV  210 (652)
Q Consensus       161 AGl--~v~~li~EptAA---a--l~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~  210 (652)
                      ...  +-+|+||..|=|   |  ||-|+. ..++.|=|-=+=||+-|.=+++-..|.
T Consensus       102 ~~~t~e~vRfVnSGTEATMsAvRLARG~T-GR~~IiKFeGcYHGh~D~lLv~AGSGa  157 (434)
T TIGR00713       102 PSVTEEMVRFVNSGTEATMSAVRLARGFT-GRDKIIKFEGCYHGHHDALLVKAGSGA  157 (434)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCC-CCCCEEEECCCCCCCHHHHCCCCCCHH
T ss_conf             55546516862176488999999863105-887278861764101232003545210


No 408
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import.  Responsible for energy coupling to the transport system.  The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP).  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.50  E-value=24  Score=13.71  Aligned_cols=36  Identities=28%  Similarity=0.290  Sum_probs=25.0

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      --|...+--|||.+--|-.+|-=.-+-|++||||+-
T Consensus       132 ~~p~eLSGGq~QRVaiARAl~~~P~vlllDEP~s~L  167 (239)
T cd03296         132 RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL  167 (239)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             896669998989999999876499989973886646


No 409
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772    This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=26.43  E-value=15  Score=15.20  Aligned_cols=60  Identities=22%  Similarity=0.270  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEEE
Q ss_conf             99999999885411556503586304434678872126873110000123420000110011110101356311014663
Q gi|255764494|r  255 QRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVL  334 (652)
Q Consensus       255 ~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~l  334 (652)
                      .|+.++.|++-..-.    +.+.+   ..      |=+-||+|..|.++|+.++.+-+            .     -=+-
T Consensus       229 kKfvdEI~~L~r~hg----VgfF~---LA------DEePT~Nr~~f~efCEe~Iar~l------------~-----~~v~  278 (506)
T TIGR02026       229 KKFVDEIEKLVREHG----VGFFI---LA------DEEPTVNRKKFQEFCEELIARNL------------Q-----IKVT  278 (506)
T ss_pred             CHHHHHHHHHHHHCC----CCEEE---EC------CCCCCCCHHHHHHHHHHHHHCCC------------C-----EEEE
T ss_conf             138999999986318----53366---32------78873016899999999985789------------5-----6999


Q ss_pred             CCCCCCHHHH
Q ss_conf             0785305677
Q gi|255764494|r  335 VGGMTRMPKI  344 (652)
Q Consensus       335 vGGssriP~v  344 (652)
                      .||+||+-=|
T Consensus       279 ~ginTRv~Di  288 (506)
T TIGR02026       279 WGINTRVTDI  288 (506)
T ss_pred             EEEEECCCHH
T ss_conf             9651113042


No 410
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion.  Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins.  Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=26.40  E-value=30  Score=12.99  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=22.4

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCC--CCCCCCHHHHH
Q ss_conf             7887402578863442112222--22221024788
Q gi|255764494|r  144 AYFNDAQRQATKDAGRIAGLDV--LRIINEPTAAA  176 (652)
Q Consensus       144 ~~f~~~qR~a~~~Aa~~AGl~v--~~li~EptAAa  176 (652)
                      ...+--|||.+--|..++.-.-  +-+++|||++-
T Consensus        86 ~~LSGGqkQRvaiAraL~~~p~~~ililDEPtsgL  120 (176)
T cd03238          86 STLSGGELQRVKLASELFSEPPGTLFILDEPSTGL  120 (176)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf             86899999999999999868998689971774458


No 411
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase; InterPro: IPR010039   This entry describes a small family of highly conserved proteins (>60 0dentity). Two of these, BcbF and EcbF of Pasteurella multocida are believed to be part of the capsule polysaccharide biosynthesis machinery because they are co-transcribed from a locus devoted to that purpose . In P. multocida there are six different variant capsules (A-F), and these proteins are found only in B and E. The other two species in which this gene is (currently) found are both also pathogenic. These proteins are also members of the IIIC subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. All of the characterised enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases  are present in this subfamily..
Probab=26.33  E-value=31  Score=12.88  Aligned_cols=42  Identities=14%  Similarity=0.284  Sum_probs=28.6

Q ss_pred             CCCEEEEE--CC-CCEEEEEECCEEECHHHHHHHHHHHHHHHHHH
Q ss_conf             19869997--59-98279995795871999999999999999999
Q gi|255764494|r   88 LVPFKIVE--GK-GGDAWIEAQGKQYSPSQISAIVLQKMKETAES  129 (652)
Q Consensus        88 ~~~~~~~~--~~-~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~  129 (652)
                      ..||+-+-  .+ .|.-+|-++.+...|+|-+++-+..++...+.
T Consensus        77 ~VPyDEI~vGKPWCG~dGFYvDDRAiRP~EF~~L~~d~I~~l~~~  121 (126)
T TIGR01689        77 NVPYDEIYVGKPWCGHDGFYVDDRAIRPEEFSSLTYDEIKKLTKI  121 (126)
T ss_pred             CCCCCEEEECCCCCCCCCCEECCCCCCCHHHHCCCHHHHHHHHHH
T ss_conf             998452664487418888355253338212201577899888753


No 412
>smart00035 CLa CLUSTERIN alpha chain.
Probab=26.24  E-value=34  Score=12.61  Aligned_cols=25  Identities=20%  Similarity=0.359  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             0244789999999999885411556
Q gi|255764494|r  247 LKQDTLALQRLKEAAEKAKIELSST  271 (652)
Q Consensus       247 ~~~~~~a~~rL~~~~e~aK~~LS~~  271 (652)
                      ++.|.....++...|||++..||.-
T Consensus        61 iR~NSsgClk~~~~CeKCqeiL~~D   85 (216)
T smart00035       61 IRHNSTGCLKMKDQCEKCQEILSVD   85 (216)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             7206235567898999999998875


No 413
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=26.23  E-value=34  Score=12.61  Aligned_cols=99  Identities=18%  Similarity=0.391  Sum_probs=54.9

Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
Q ss_conf             542013322455213447665536787642013---43024478999999999988541155650358630443467887
Q gi|255764494|r  212 EVKATNGDTFLGGEDFDSCLVEHICDTFKKENG---IDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGA  288 (652)
Q Consensus       212 ~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~---~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g  288 (652)
                      +|.=|+|.+-| =.|+...+     +..+...+   +.+++|-.   .|.+.++++|..  .-....|+++++       
T Consensus        70 kiRlTGGEPLl-R~di~~li-----~~l~~~~gi~~v~lTTNG~---lL~~~a~~Lk~a--GL~riNISLDsL-------  131 (334)
T PRK00164         70 KIRLTGGEPLL-RKDLEDII-----ARLAALPGIRDLALTTNGY---LLARRAAALKDA--GLTRVNVSLDSL-------  131 (334)
T ss_pred             EEEECCCCCCC-CCCHHHHH-----HHHHHCCCCCCEEEECCHH---HHHHHHHHHHHC--CCCEEEEEEEEC-------
T ss_conf             79860788432-35789999-----9986327975178844488---999999999985--998699711318-------


Q ss_pred             CEEEEEECCCCCCCCCC-CCHHHHHHCCCCCCHHCCCCCEEEEEEEECC
Q ss_conf             21268731100001234-2000011001111010135631101466307
Q gi|255764494|r  289 QHLNMKLTRAQFERLVN-HLIQKTVEPCKKCLQDAGLSPSDIDEVVLVG  336 (652)
Q Consensus       289 ~d~~~~itR~~fe~l~~-~l~~~~~~~i~~~L~~a~~~~~~I~~V~lvG  336 (652)
                             .++.|.++.. ..+.++..-|+.|++ +|+++--|+.|++=|
T Consensus       132 -------d~~~f~~IT~~~~l~~Vl~gI~~A~~-~G~~~vKiN~V~~~g  172 (334)
T PRK00164        132 -------DPERFKAITGRDRLDQVLAGIDAALA-AGLEPVKVNAVLMKG  172 (334)
T ss_pred             -------CHHHHHHHHCCCCHHHHHHHHHHHHH-CCCCCEEEEEEEECC
T ss_conf             -------99999998489975999999999995-898761689996379


No 414
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=26.18  E-value=27  Score=13.36  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=25.6

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             37788740257886344211222222221024788
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -|...+--|||.+--|..++.=..+-|++||||.-
T Consensus       140 ~~~~LSgGqkqrv~iA~aL~~~P~lllLDEPt~gL  174 (242)
T TIGR03411       140 LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM  174 (242)
T ss_pred             CHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             63459978999999999997389989991864369


No 415
>cd03299 ABC_ModC_like Archeal protein closely related to ModC.  ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.01  E-value=26  Score=13.47  Aligned_cols=36  Identities=17%  Similarity=0.216  Sum_probs=25.9

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      --|...+.-|||.+--|-.++.=.-+-|++|||++-
T Consensus       125 ~~p~~LSGGq~QRVaiARAl~~~P~llllDEP~s~L  160 (235)
T cd03299         125 RKPETLSGGEQQRVAIARALVVNPKILLLDEPFSAL  160 (235)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             894458999999999999997389989992887646


No 416
>pfam10452 TCO89 TORC1 subunit TCO89. TC089 is a component of the TORC1 complex. TORC1 is responsible for a wide range of rapamycin-sensitive cellular activities.
Probab=26.01  E-value=34  Score=12.58  Aligned_cols=37  Identities=22%  Similarity=0.416  Sum_probs=17.6

Q ss_pred             HCCCCCCCCCCCHHHHHHHHHCC-CCCCCEEEEEEECCC
Q ss_conf             11222222221024788886034-456550799872441
Q gi|255764494|r  160 IAGLDVLRIINEPTAAALAYGLD-KKDARTVIVFDFGGG  197 (652)
Q Consensus       160 ~AGl~v~~li~EptAAal~Y~~~-~~~~~~vlV~D~Ggg  197 (652)
                      +.||+-..|..-|+-.+ +.|+. .....+-.|.|+-++
T Consensus        58 iSgLnMTAL~~~p~h~g-~~GL~p~r~~st~sVl~Lh~~   95 (457)
T pfam10452        58 LSGLNMTALSSGPVHTG-GNGLIPRRGRSTHSVLDLHDA   95 (457)
T ss_pred             HCCCCEEEECCCCCCCC-CCCCCCCCCCCCCEEEEECCC
T ss_conf             31463132025776568-888677889866146775257


No 417
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=26.00  E-value=25  Score=13.59  Aligned_cols=32  Identities=16%  Similarity=0.099  Sum_probs=24.1

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             78874025788634421122222222102478
Q gi|255764494|r  144 AYFNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       144 ~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      ..++.-|||.+.-|..+|.=.-+-+++||||.
T Consensus       122 ~~LS~G~kqrv~iAral~~~p~llllDEPt~~  153 (195)
T PRK13541        122 YSLSSGMQKVVALARLIACQSDLWLLDEVETN  153 (195)
T ss_pred             HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             45999999999999999709999999787655


No 418
>PRK07800 consensus
Probab=25.97  E-value=25  Score=13.67  Aligned_cols=52  Identities=25%  Similarity=0.288  Sum_probs=30.4

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCC-CCCCHHHHHHHHHHHCCCC
Q ss_conf             58719999999999999999998388473369853--778-8740257886344211222
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAY-FNDAQRQATKDAGRIAGLD  164 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~-f~~~qR~a~~~Aa~~AGl~  164 (652)
                      +.++|++|.+..++.+.+.+. .-...|.++++..  |.. .....|++    +-.+|+.
T Consensus        22 ~~~~~~~L~~~~i~~~l~~~g-l~p~~Id~vi~G~v~~~g~g~n~aR~~----~l~aglp   76 (393)
T PRK07800         22 KDFSASDLGGIAIKAALEKAG-VAADQVDYVIMGQVLQAGAGQIPARQA----AVAAGIP   76 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCCCCCCHHHHH----HHHCCCC
T ss_conf             999889999999999999749-998998989999247667665099999----9976989


No 419
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=25.96  E-value=27  Score=13.33  Aligned_cols=38  Identities=24%  Similarity=0.238  Sum_probs=28.9

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             98537788740257886344211222222221024788
Q gi|255764494|r  139 VITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       139 VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .=.-|...+--|||.+--|..++.=..+=|++|||++-
T Consensus       138 ~~~~p~~LSgGq~QRvaiAral~~~p~vlllDEPT~~L  175 (648)
T PRK10535        138 VEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGAL  175 (648)
T ss_pred             HCCCHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf             55782338999999999999997289899956885557


No 420
>KOG0994 consensus
Probab=25.96  E-value=34  Score=12.58  Aligned_cols=12  Identities=8%  Similarity=0.343  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q gi|255764494|r  557 QKSIRESIDALR  568 (652)
Q Consensus       557 k~~i~~~l~e~e  568 (652)
                      ..+|...+++++
T Consensus      1621 ~~eL~~~~e~lk 1632 (1758)
T KOG0994        1621 LGELETRMEELK 1632 (1758)
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999


No 421
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=25.90  E-value=25  Score=13.64  Aligned_cols=11  Identities=18%  Similarity=0.480  Sum_probs=4.4

Q ss_pred             HHHHHHCCCCC
Q ss_conf             63442112222
Q gi|255764494|r  155 KDAGRIAGLDV  165 (652)
Q Consensus       155 ~~Aa~~AGl~v  165 (652)
                      .++|+.+|..+
T Consensus       115 ~e~a~~~Gv~I  125 (339)
T COG0309         115 DEEAEEAGVSI  125 (339)
T ss_pred             HHHHHHCCCEE
T ss_conf             99999839749


No 422
>PRK06845 consensus
Probab=25.84  E-value=34  Score=12.56  Aligned_cols=56  Identities=18%  Similarity=0.153  Sum_probs=31.3

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             587199999999999999999983884733698537788740257886344211222
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLD  164 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~  164 (652)
                      +.++|++|.+..++.+.+.+. --...|..+++..=..-...+-...+.++-.|||.
T Consensus        22 ~~~~~~~L~~~a~~~al~~~g-i~~~~Id~vi~G~~~~~g~~~~~~aR~~aL~aGlp   77 (392)
T PRK06845         22 KDLSATDLGVAAAKAALEQAG-VSPEDIGHVVFGNVIQTGKDAIYLARHIGLKAGLP   77 (392)
T ss_pred             CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCC
T ss_conf             889999999999999998719-79899798999815645654334999999976999


No 423
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  This PDR subfamily represents domain I of its (ABC-IM)2 organization.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.84  E-value=28  Score=13.18  Aligned_cols=31  Identities=19%  Similarity=0.254  Sum_probs=21.7

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8740257886344211222222221024788
Q gi|255764494|r  146 FNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       146 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .+..|||.+--|..++.=..+-|++|||++-
T Consensus       109 LS~gqrqrv~iA~aL~~~P~lllLDEPt~gL  139 (192)
T cd03232         109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGL  139 (192)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             7976765899999984499889984887688


No 424
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=25.81  E-value=34  Score=12.56  Aligned_cols=65  Identities=20%  Similarity=0.080  Sum_probs=38.8

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC-CEEEEEEECCCEEEE
Q ss_conf             36985377887402578863442112222222210247888860344565-507998724411454
Q gi|255764494|r  137 KAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDA-RTVIVFDFGGGTFDV  201 (652)
Q Consensus       137 ~~VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~-~~vlV~D~Gggt~dv  201 (652)
                      +.|.++|..+...=-.++..+-...+++.+..-||-.|+..|-|.-+... --+++.-.|-|.+..
T Consensus        35 ~~iFG~PG~~~lpl~dal~~~~~~~~i~~I~~rhE~~A~~aAdGYAR~tGk~gv~~~T~GPG~~N~  100 (615)
T PRK07418         35 KHIFGYPGGAILPIYDALYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTSGPGATNL  100 (615)
T ss_pred             CEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
T ss_conf             899980797537999999845546896186229789999999999999799989996456079999


No 425
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds.  Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders.  The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis.  The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle.  The ABCA genes are not present in yeast.  However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=25.80  E-value=26  Score=13.51  Aligned_cols=36  Identities=14%  Similarity=0.171  Sum_probs=27.5

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|..++.-|||.+--|..+++=..+-+++|||+.-
T Consensus       129 ~~~~~LSgG~kqrv~ia~al~~~P~lliLDEPt~gL  164 (220)
T cd03263         129 KRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL  164 (220)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             757678999999999999995699999995887688


No 426
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.  This family is also known as MRP (mulrtidrug resisitance-associated protein).  Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=25.77  E-value=32  Score=12.77  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=20.4

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             788740257886344211222222221024788
Q gi|255764494|r  144 AYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       144 ~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      ..++.-|||.+--|-.++.=..+-|++|||++.
T Consensus       126 ~~LSgGQkQRvalARal~~~~~illlDEPts~L  158 (204)
T cd03250         126 INLSGGQKQRISLARAVYSDADIYLLDDPLSAV  158 (204)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             757999999999999995399999996987666


No 427
>KOG0445 consensus
Probab=25.76  E-value=25  Score=13.56  Aligned_cols=13  Identities=46%  Similarity=0.948  Sum_probs=10.8

Q ss_pred             CCCCEEEEEEECC
Q ss_conf             5655079987244
Q gi|255764494|r  184 KDARTVIVFDFGG  196 (652)
Q Consensus       184 ~~~~~vlV~D~Gg  196 (652)
                      -+++.|||||||.
T Consensus       368 l~p~eVLvFDFGS  380 (919)
T KOG0445         368 LQPKEVLVFDFGS  380 (919)
T ss_pred             CCCCEEEEEECCC
T ss_conf             4763589996475


No 428
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=25.73  E-value=35  Score=12.55  Aligned_cols=22  Identities=27%  Similarity=0.288  Sum_probs=10.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             0001124566899999999899
Q gi|255764494|r  498 ASGGLSSEDIEKMVKDAEMNAE  519 (652)
Q Consensus       498 ~~~~Ls~eei~~~~~eae~~~~  519 (652)
                      .-.|++.+||+.+.++-..+++
T Consensus       115 ~~lG~~~~ei~~~~~eIieFaE  136 (249)
T COG1134         115 LILGLTRKEIDEKVDEIIEFAE  136 (249)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHH
T ss_conf             9846669999988899999987


No 429
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=25.68  E-value=28  Score=13.26  Aligned_cols=33  Identities=15%  Similarity=0.179  Sum_probs=22.7

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             788740257886344211222222221024788
Q gi|255764494|r  144 AYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       144 ~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      ..++.-|||.+.-|.-++.=..+-+++||||.-
T Consensus       126 ~~LSgGqkqrv~lar~l~~~p~illLDEPt~gL  158 (200)
T PRK13540        126 GLLSSGQKRQVALLRLWMSKAKLWLLDEPLVAL  158 (200)
T ss_pred             HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             249999999999999998399989991776438


No 430
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=25.49  E-value=24  Score=13.71  Aligned_cols=64  Identities=14%  Similarity=0.196  Sum_probs=34.7

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCCC--CCCHHHHHHHHHH---HCCCCCCCCCCCH
Q ss_conf             58719999999999999999998388473369853--7788--7402578863442---1122222222102
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAYF--NDAQRQATKDAGR---IAGLDVLRIINEP  172 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~f--~~~qR~a~~~Aa~---~AGl~v~~li~Ep  172 (652)
                      +.++|++|.+..++.+...+. .-...|.++|+..  ++.-  ....|++.+.|.-   ..++.+-+..-..
T Consensus        22 ~~~~~~~L~~~a~~~~l~r~~-v~~~~Id~vi~G~v~~~g~~~~n~aR~~~l~aglp~~vpa~tvn~~C~SG   92 (390)
T PRK06504         22 AGWHPADLAAQVLDALVDRSG-ADPAQIEDVIMGCVSQAGEQAMNVARNAVLASKLPESVPGTSIDRQCGSS   92 (390)
T ss_pred             CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCH
T ss_conf             999899999999999998809-89899898999917874533240999999977999767547773467858


No 431
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component.  Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems.  The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions.  The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=25.37  E-value=31  Score=12.87  Aligned_cols=33  Identities=15%  Similarity=0.185  Sum_probs=23.5

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             788740257886344211222222221024788
Q gi|255764494|r  144 AYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       144 ~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      ..|+--|||.+.-|..++.=.-+-+++|||++-
T Consensus       103 ~~LSGGekqrv~iaral~~~P~lllLDEPtsgL  135 (200)
T cd03217         103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGL  135 (200)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             367999999999999996099999996962269


No 432
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=25.36  E-value=35  Score=12.50  Aligned_cols=71  Identities=18%  Similarity=0.180  Sum_probs=35.5

Q ss_pred             EEECHHHHHHHHHHHHHHH-HHHHHCCCCCEEEEE--ECCC--CCCCHHHHHHHHH---HHCCCCCCCCCCCHH-HHHHH
Q ss_conf             5871999999999999999-999838847336985--3778--8740257886344---211222222221024-78888
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKET-AESFLGETVSKAVIT--VPAY--FNDAQRQATKDAG---RIAGLDVLRIINEPT-AAALA  178 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~-ae~~l~~~v~~~Vit--VP~~--f~~~qR~a~~~Aa---~~AGl~v~~li~Ept-AAal~  178 (652)
                      +.++|++|.+..++.+.+. +. .-...|+++++.  .|+-  .....|++.+.|.   ...++.+-|..-... |..++
T Consensus        22 ~~~~~~~L~a~~i~~~l~r~~~-l~~~~Id~vi~G~~~~~g~~g~n~aR~aal~aGlp~~vpa~TVnr~C~SGl~Ai~~A  100 (401)
T PRK09050         22 SSVRADDLGAVPLKALMERNPG-VDWEAVDDVIYGCANQAGEDNRNVARMSALLAGLPVSVPGTTINRLCGSGMDAVGTA  100 (401)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCC-CCHHHCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHH
T ss_conf             9998899999999999973589-698998959996377657455769999999779998885578601307899999999


Q ss_pred             H
Q ss_conf             6
Q gi|255764494|r  179 Y  179 (652)
Q Consensus       179 Y  179 (652)
                      +
T Consensus       101 a  101 (401)
T PRK09050        101 A  101 (401)
T ss_pred             H
T ss_conf             9


No 433
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake.  NatB possess six putative membrane spanning regions at its C-terminus.  In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane.  The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system.  Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=25.30  E-value=26  Score=13.51  Aligned_cols=31  Identities=19%  Similarity=0.202  Sum_probs=18.7

Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             8874025788634421122222222102478
Q gi|255764494|r  145 YFNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       145 ~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      .++.-|||.+.-|..+++=.-+-+++|||+.
T Consensus       153 ~LSgG~rqrv~ia~aL~~~P~lllLDEPt~g  183 (236)
T cd03267         153 QLSLGQRMRAEIAAALLHEPEILFLDEPTIG  183 (236)
T ss_pred             HCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             6999999999999999679999999798768


No 434
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=25.15  E-value=35  Score=12.47  Aligned_cols=18  Identities=28%  Similarity=0.412  Sum_probs=9.0

Q ss_pred             CCHHHHHHHHHHHHHHHH
Q ss_conf             998999999999999999
Q gi|255764494|r  552 IAEAEQKSIRESIDALRT  569 (652)
Q Consensus       552 lse~ek~~i~~~l~e~e~  569 (652)
                      ++++|+..+...++++++
T Consensus       628 ~~~~~~~~~~~~~~~~~~  645 (706)
T PRK12820        628 FAEAERAAIESALADAEE  645 (706)
T ss_pred             CCHHHHHHHHHHHHHHHH
T ss_conf             785677889999999999


No 435
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=25.13  E-value=35  Score=12.47  Aligned_cols=39  Identities=15%  Similarity=0.128  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999989998999999999999999999999999872
Q gi|255764494|r  508 EKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREH  548 (652)
Q Consensus       508 ~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~e~  548 (652)
                      +++..+++...  ....+...++|+++...+.+.++.+...
T Consensus        54 ~~~k~eae~~~--~~ye~~l~~Ak~eA~~i~~ea~~~l~~e   92 (157)
T PRK06569         54 DTLTLEVEKLN--KYYNEEIDKTNTEIDRLKKEKIDSLESE   92 (157)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999--9999999999999999999999999999


No 436
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis.  The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes.  CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space.  In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=25.06  E-value=35  Score=12.53  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=22.5

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             788740257886344211222222221024788
Q gi|255764494|r  144 AYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       144 ~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      ..++.-|||.+--|..++.=..+-+++||||+.
T Consensus        97 ~~LSgGqkqRv~iAral~~~p~ililDEpts~L  129 (178)
T cd03247          97 RRFSGGERQRLALARILLQDAPIVLLDEPTVGL  129 (178)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf             888999999999999996497976722865569


No 437
>TIGR02148 Fibro_Slime fibro-slime domain; InterPro: IPR011874    This entry represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far..
Probab=24.86  E-value=31  Score=12.89  Aligned_cols=12  Identities=33%  Similarity=0.459  Sum_probs=8.3

Q ss_pred             EEEEEEECCCEE
Q ss_conf             079987244114
Q gi|255764494|r  188 TVIVFDFGGGTF  199 (652)
Q Consensus       188 ~vlV~D~Gggt~  199 (652)
                      +=||+|+||-+.
T Consensus        36 nkLvVD~GG~H~   47 (92)
T TIGR02148        36 NKLVVDLGGLHP   47 (92)
T ss_pred             CEEEEEECCCCC
T ss_conf             988870088555


No 438
>PRK07124 consensus
Probab=24.85  E-value=26  Score=13.45  Aligned_cols=49  Identities=18%  Similarity=0.177  Sum_probs=29.4

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCC-CCCCHHHHHHHH
Q ss_conf             58719999999999999999998388473369853--778-874025788634
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAY-FNDAQRQATKDA  157 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~-f~~~qR~a~~~A  157 (652)
                      +.++|.+|.+..++.+.+.+. .-...|+.+|+..  |.. .....|++.+.+
T Consensus        22 ~~~~~~~L~~~ai~~al~~~~-i~~~~Id~vi~G~v~~~g~g~n~ar~~al~a   73 (402)
T PRK07124         22 KSVPAGELAGVAIKGALEQAK-VSPEAIDEVIVGNVVSAGQGMGPGRQAAIFA   73 (402)
T ss_pred             CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEEECCCCCCCCCHHHHHHHHC
T ss_conf             899999999999999999839-8989999899993475555667999999976


No 439
>pfam08392 FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein. The members of this family are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region featured in this family contains the active site residues, as well as motifs involved in substrate binding.
Probab=24.81  E-value=34  Score=12.58  Aligned_cols=56  Identities=16%  Similarity=0.306  Sum_probs=40.4

Q ss_pred             EEEECCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEEEE-ECCCCCCHHHHHHHHHHCCCC
Q ss_conf             687311000012342000011001111010135631101466-307853056778865410111
Q gi|255764494|r  292 NMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVV-LVGGMTRMPKIQQSVQDFFNK  354 (652)
Q Consensus       292 ~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~I~~V~-lvGGssriP~v~~~i~~~fg~  354 (652)
                      +..-.|+|.|..+       ...|++.|++.|++|.|||-++ =+...+-.|-+-.+|-+.|+-
T Consensus        75 s~~~ar~Eae~v~-------f~avd~Lf~ktgv~P~dIdiLVvNcSlf~PtPSLsamivNrykm  131 (290)
T pfam08392        75 TMAEAREEAEEVM-------FGAVDELFAKTGVRPRDIGILVVNCSLFNPTPSLSAMIVNRYKM  131 (290)
T ss_pred             CHHHHHHHHHHHH-------HHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCHHHHHHHHHCC
T ss_conf             7999999999999-------99999999973998768999999677888885289999886068


No 440
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases; InterPro: IPR002155   Two different types of thiolase , ,  are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis.   In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes.   There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction.   Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases ..
Probab=24.80  E-value=36  Score=12.43  Aligned_cols=70  Identities=26%  Similarity=0.274  Sum_probs=41.2

Q ss_pred             CCEEECHHHHHHHHHHHHHHHH-H---HHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCC-------CCCCCCCCH-H
Q ss_conf             7958719999999999999999-9---98388473369853778874025788634421122-------222222102-4
Q gi|255764494|r  106 QGKQYSPSQISAIVLQKMKETA-E---SFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGL-------DVLRIINEP-T  173 (652)
Q Consensus       106 ~~~~~~peei~a~iL~~lk~~a-e---~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl-------~v~~li~Ep-t  173 (652)
                      --+.++|++|.+.+++.+.+.. .   +....-|-.+|+..........|++.    -.|||       .|-|+.-.. +
T Consensus        18 ~~~~~~a~dL~~~~i~~ll~r~p~l~~~~iD~vi~G~V~~~g~~g~~~aR~aa----L~AGl~~~vpa~tvnr~CaSGl~   93 (447)
T TIGR01930        18 SLKDLSAEDLGAAVIKELLERNPGLDPELIDDVILGNVLQAGEQGQNIARQAA----LAAGLPESVPALTVNRQCASGLQ   93 (447)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEEEECCCCCCHHHHHHHH----HHCCCCCCCCEEEECHHHHHHHH
T ss_conf             45787879999999999998536888467281776100057764414899999----87068987873442023242799


Q ss_pred             HHHHHH
Q ss_conf             788886
Q gi|255764494|r  174 AAALAY  179 (652)
Q Consensus       174 AAal~Y  179 (652)
                      |..+++
T Consensus        94 Av~~aa   99 (447)
T TIGR01930        94 AVALAA   99 (447)
T ss_pred             HHHHHH
T ss_conf             999999


No 441
>pfam04684 BAF1_ABF1 BAF1 / ABF1 chromatin reorganising factor. ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication. ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 S. cerevisiae ). The N-terminal two thirds of the protein are necessary for DNA binding, and the N-terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilize the protein structure.
Probab=24.70  E-value=29  Score=13.16  Aligned_cols=10  Identities=40%  Similarity=0.693  Sum_probs=5.5

Q ss_pred             HHHCCCEEEE
Q ss_conf             5201986999
Q gi|255764494|r   85 DASLVPFKIV   94 (652)
Q Consensus        85 ~~~~~~~~~~   94 (652)
                      .++.+||+|.
T Consensus        65 HLKsCPFKIL   74 (508)
T pfam04684        65 HLKSCPFKIL   74 (508)
T ss_pred             ECCCCCCEEE
T ss_conf             4268862247


No 442
>PRK07937 lipid-transfer protein; Provisional
Probab=24.69  E-value=18  Score=14.61  Aligned_cols=13  Identities=31%  Similarity=0.716  Sum_probs=7.3

Q ss_pred             CCCCEEEEEEECC
Q ss_conf             5655079987244
Q gi|255764494|r  184 KDARTVIVFDFGG  196 (652)
Q Consensus       184 ~~~~~vlV~D~Gg  196 (652)
                      ..-..+||+-++-
T Consensus       100 G~~d~vLvvG~ek  112 (352)
T PRK07937        100 GEVDTALVYGFGK  112 (352)
T ss_pred             CCCCEEEEEEECC
T ss_conf             8999899987336


No 443
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=24.62  E-value=29  Score=13.07  Aligned_cols=51  Identities=24%  Similarity=0.369  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHCCCCCEEEEEE-----------CCCCCCCHHHHHHHHHHHCC
Q ss_conf             999999999999999999-8388473369853-----------77887402578863442112
Q gi|255764494|r  112 PSQISAIVLQKMKETAES-FLGETVSKAVITV-----------PAYFNDAQRQATKDAGRIAG  162 (652)
Q Consensus       112 peei~a~iL~~lk~~ae~-~l~~~v~~~VitV-----------P~~f~~~qR~a~~~Aa~~AG  162 (652)
                      |.+-...+-+-+++.... .+|.+++++-+|+           +..|.-+-+.|+++|++.||
T Consensus        53 P~~f~~ave~Gv~eal~~Gv~Gypv~DvkVtL~dG~~h~vdSs~~aF~~Aa~~A~r~Al~~AG  115 (115)
T cd01684          53 PRSFQNAVEETVRETLQQGLYGWEVTDCKVTLTYGRYHSPVSTAADFRELTPRVLRQALKKAG  115 (115)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             988999999999999952988887745899998163048878888999999999999999767


No 444
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251   This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=24.61  E-value=25  Score=13.60  Aligned_cols=185  Identities=25%  Similarity=0.354  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCC--HH---HHHHHHHHHCCCCCCC-CCCCH-----HHHH---HHHHCCCCC
Q ss_conf             999999999983884733698537788740--25---7886344211222222-22102-----4788---886034456
Q gi|255764494|r  120 LQKMKETAESFLGETVSKAVITVPAYFNDA--QR---QATKDAGRIAGLDVLR-IINEP-----TAAA---LAYGLDKKD  185 (652)
Q Consensus       120 L~~lk~~ae~~l~~~v~~~VitVP~~f~~~--qR---~a~~~Aa~~AGl~v~~-li~Ep-----tAAa---l~Y~~~~~~  185 (652)
                      |++||.+   .|-.|.+.  =|.|..|++.  |-   +||+  |.+.|=|... +|+-|     ||||   |.|+.....
T Consensus        43 Ln~mR~I---~Lt~PL~E--k~RP~SF~EIiGQe~GI~ALK--AALCGPNPQHVIiYGPPGVGKTAAARLVLeeAKk~~~  115 (532)
T TIGR02902        43 LNKMRAI---RLTEPLSE--KTRPKSFDEIIGQEEGIKALK--AALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPA  115 (532)
T ss_pred             HHCCCEE---ECCCCCCC--CCCCCCCCCCCCCHHHHHHHH--HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             6111434---16788774--667776332567355689999--8606868963898788696178999999998650875


Q ss_pred             ---CCEEEEEEECCCEEEEEEEEECCC-EEEE-ECCCCCC-----------------------CCCCHHHHHHHHHHHHH
Q ss_conf             ---550799872441145431010231-4654-2013322-----------------------45521344766553678
Q gi|255764494|r  186 ---ARTVIVFDFGGGTFDVSLLEMGDG-VFEV-KATNGDT-----------------------FLGGEDFDSCLVEHICD  237 (652)
Q Consensus       186 ---~~~vlV~D~Gggt~dvsi~~~~~~-~~~v-l~~~gd~-----------------------~lGG~d~D~~l~~~~~~  237 (652)
                         ...-.|+     -.|+|.++|++. .-+- +++.+|+                       -=||--        |++
T Consensus       116 SPFke~A~FV-----EiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGGvL--------FID  182 (532)
T TIGR02902       116 SPFKEEAAFV-----EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVL--------FID  182 (532)
T ss_pred             CCCCCCCEEE-----EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE--------EEC
T ss_conf             3789886689-----850510360214666656776158533376545788557587776320258655--------121


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             76420134302447899999999998854115565035863044346788721268731100001234200001100111
Q gi|255764494|r  238 TFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKK  317 (652)
Q Consensus       238 ~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~  317 (652)
                      ++.+       .+|-.|.||++--|-=|-=|-+   |-.     .++     |=++.       +-+.++|+.       
T Consensus       183 EIGE-------LHP~~MNKLLKVLEDRKVFLdS---AYY-----~s~-----~pniP-------~hI~dIFqn-------  228 (532)
T TIGR02902       183 EIGE-------LHPVQMNKLLKVLEDRKVFLDS---AYY-----SSE-----DPNIP-------SHIRDIFQN-------  228 (532)
T ss_pred             CCCC-------CCHHHHHHHHHHHHCCCCHHHC---CCC-----CCC-----CCCCC-------HHHHHHHCC-------
T ss_conf             2466-------5824353141133022200001---235-----877-----78654-------278997206-------


Q ss_pred             CCHHCCCCCEEEEEEEECCCCCCH-----HHHHHHHHHCCCCCCCCCCCCCCH--HHHHHH
Q ss_conf             101013563110146630785305-----677886541011111113565310--111110
Q gi|255764494|r  318 CLQDAGLSPSDIDEVVLVGGMTRM-----PKIQQSVQDFFNKSPSKGVNPDEV--VAMGAA  371 (652)
Q Consensus       318 ~L~~a~~~~~~I~~V~lvGGssri-----P~v~~~i~~~fg~~~~~~~npdea--Va~GAA  371 (652)
                           |+..+    .=|||-+||.     |.+|.+--+.|    .+.|.++|.  ||+=||
T Consensus       229 -----GlPAD----FRLiGATTR~PeEIpPAlRSRC~EIF----FR~L~~EEi~~iAk~Aa  276 (532)
T TIGR02902       229 -----GLPAD----FRLIGATTRNPEEIPPALRSRCVEIF----FRPLLKEEIKEIAKNAA  276 (532)
T ss_pred             -----CCCCC----EECCCCCCCCCCCCCHHHHCCCEEEE----ECCCCHHHHHHHHHHHH
T ss_conf             -----78734----01213336987767834650522677----16888789999987656


No 445
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1).  NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters.  Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed.  MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=24.57  E-value=36  Score=12.39  Aligned_cols=33  Identities=21%  Similarity=0.153  Sum_probs=21.0

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             778874025788634421122222222102478
Q gi|255764494|r  143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      +..++.-|||.+--|-.++.=..+-+++|||++
T Consensus       123 g~~LSgGqkQrl~iARal~~~p~ililDEpts~  155 (207)
T cd03369         123 GLNLSQGQRQLLCLARALLKRPRVLVLDEATAS  155 (207)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             888698999999999999708999998163444


No 446
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=24.52  E-value=31  Score=12.90  Aligned_cols=36  Identities=19%  Similarity=0.131  Sum_probs=23.2

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|...+--|+|.+--|-.++.=.-+=|.+||||+-
T Consensus       130 ~~p~~LSGGe~QRVAIARAL~~~P~illaDEPT~~L  165 (206)
T TIGR03608       130 QKIYELSGGEQQRVALARAILKPSELILADEPTGSL  165 (206)
T ss_pred             CCCHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             992444869999999999982499999963998778


No 447
>KOG1002 consensus
Probab=24.50  E-value=36  Score=12.39  Aligned_cols=42  Identities=26%  Similarity=0.258  Sum_probs=20.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             24566899999999899989999999999999999999999998
Q gi|255764494|r  503 SSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLR  546 (652)
Q Consensus       503 s~eei~~~~~eae~~~~~Dk~~re~~eakN~lEs~iy~~~~~l~  546 (652)
                      |...|+.++++.-.+-+.|+-.+..+=  -++-+++.-+.-.|.
T Consensus       618 sSTKIEAL~EEl~~l~~rd~t~KsIVF--SQFTSmLDLi~~rL~  659 (791)
T KOG1002         618 SSTKIEALVEELYFLRERDRTAKSIVF--SQFTSMLDLIEWRLG  659 (791)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHHHHHHHHH
T ss_conf             015799999999999971552542049--877889999998861


No 448
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=24.35  E-value=27  Score=13.32  Aligned_cols=52  Identities=19%  Similarity=0.121  Sum_probs=30.3

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC----CCCCHHHHHHHHHHHCCCC
Q ss_conf             58719999999999999999998388473369853778----8740257886344211222
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAY----FNDAQRQATKDAGRIAGLD  164 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~----f~~~qR~a~~~Aa~~AGl~  164 (652)
                      +.++|.+|.+..++.+.+.+. .-...|+++++.+=..    .....|++.    -.|||.
T Consensus        22 ~~~~~~~L~a~~ik~~l~r~~-l~~~~id~Vi~G~v~~~g~~g~n~aR~aa----L~aGlp   77 (387)
T PRK07850         22 SGLHAAELLGAVQRAVVERAG-IDPGDVEQVIGGCVTQAGEQSNNITRVAW----LTAGLP   77 (387)
T ss_pred             CCCCHHHHHHHHHHHHHHHCC-CCHHHCCEEEEECCCCCCCCCCCHHHHHH----HHCCCC
T ss_conf             999889999999999998729-89899798999878676554568999999----977999


No 449
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171.
Probab=24.31  E-value=37  Score=12.36  Aligned_cols=15  Identities=33%  Similarity=0.820  Sum_probs=9.1

Q ss_pred             CCCCEEEEEEECCCE
Q ss_conf             565507998724411
Q gi|255764494|r  184 KDARTVIVFDFGGGT  198 (652)
Q Consensus       184 ~~~~~vlV~D~Gggt  198 (652)
                      ...+.-||.||||.|
T Consensus       525 DGs~RTLFLDFGG~T  539 (982)
T TIGR02171       525 DGSKRTLFLDFGGST  539 (982)
T ss_pred             CCCCCEEEEECCCCC
T ss_conf             776732688568861


No 450
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance.  Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis.  The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC.  Bacitracin has potent antibiotic activity against gram-positive bacteria.  The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin.  The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC.  B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=24.27  E-value=31  Score=12.88  Aligned_cols=33  Identities=27%  Similarity=0.199  Sum_probs=25.4

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             778874025788634421122222222102478
Q gi|255764494|r  143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      +..++--|||.+.-|..+++=.-+-+++|||+.
T Consensus       124 ~~~LS~G~kqrl~la~al~~~p~lliLDEPt~G  156 (208)
T cd03268         124 VKGFSLGMKQRLGIALALLGNPDLLILDEPTNG  156 (208)
T ss_pred             HHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             356999999999999998569999999388768


No 451
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons.  DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly 
Probab=24.23  E-value=37  Score=12.35  Aligned_cols=47  Identities=21%  Similarity=0.367  Sum_probs=30.7

Q ss_pred             CCCEEEEEEEECCCC--CC----HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             563110146630785--30----56778865410111111135653101111100022
Q gi|255764494|r  324 LSPSDIDEVVLVGGM--TR----MPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAG  375 (652)
Q Consensus       324 ~~~~~I~~V~lvGGs--sr----iP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~  375 (652)
                      +.+.+.|.+++.||-  ++    -|.+.+.|++++....     +--+|+.|+.+.|.
T Consensus        56 ~~~~~~D~liipGG~~~~~~l~~~~~~~~~i~~~~~~~k-----~i~aiC~G~~~La~  108 (163)
T cd03135          56 VNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGK-----LIAAICAAPAVLAK  108 (163)
T ss_pred             CCCCCCCEEEECCCCCHHHHHHHCHHHHHHHHHHHHHCC-----EEEEECHHHHHHHH
T ss_conf             782017989986898217677669999999999998299-----47986454899998


No 452
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters.  PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  This PDR subfamily represents domain I of its (ABC-IM)2 organization.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.23  E-value=35  Score=12.52  Aligned_cols=33  Identities=9%  Similarity=0.040  Sum_probs=24.9

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             788740257886344211222222221024788
Q gi|255764494|r  144 AYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       144 ~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      ..++--|||.+--|..+++=.-+-|++|||+.-
T Consensus       117 ~~LSgGqkqRv~iA~aL~~~P~illlDEPt~gL  149 (202)
T cd03233         117 RGISGGERKRVSIAEALVSRASVLCWDNSTRGL  149 (202)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             458999999999999995299889983876568


No 453
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.13  E-value=33  Score=12.70  Aligned_cols=31  Identities=26%  Similarity=0.257  Sum_probs=24.8

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8740257886344211222222221024788
Q gi|255764494|r  146 FNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       146 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .+.-|||.+--|..++.=..+-+++|||++.
T Consensus        81 LSgGqkqrv~iA~al~~~p~ililDEPtsgL  111 (157)
T cd00267          81 LSGGQRQRVALARALLLNPDLLLLDEPTSGL  111 (157)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             8869999999999997099999996987668


No 454
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment.  ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.99  E-value=29  Score=13.13  Aligned_cols=36  Identities=25%  Similarity=0.266  Sum_probs=26.0

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -.|...+--|||.+--|-.+|.=.-+-|++|||+|-
T Consensus       131 ~~p~~LSGGqkQRvaiARAl~~~P~ilLlDEP~saL  166 (242)
T cd03295         131 RYPHELSGGQQQRVGVARALAADPPLLLMDEPFGAL  166 (242)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             795668999999999999996299999981876546


No 455
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=23.93  E-value=33  Score=12.74  Aligned_cols=34  Identities=21%  Similarity=0.174  Sum_probs=19.1

Q ss_pred             CCCCCCCHHHHHHHHHHHCC----------CCCCCCCCCHHHHH
Q ss_conf             77887402578863442112----------22222221024788
Q gi|255764494|r  143 PAYFNDAQRQATKDAGRIAG----------LDVLRIINEPTAAA  176 (652)
Q Consensus       143 P~~f~~~qR~a~~~Aa~~AG----------l~v~~li~EptAAa  176 (652)
                      |...+.-|||.+.-|..+|-          =.-+=|++||||+-
T Consensus       143 ~~~LSGGq~qRv~iAraL~~l~~~~~al~~~P~lLlLDEPts~L  186 (273)
T PRK13547        143 VTTLSGGELARVQFARVLAQLWPPDPGAAQPPRYLLLDEPTAAL  186 (273)
T ss_pred             CHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC
T ss_conf             11269999999999999985101110136898689972874448


No 456
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=23.90  E-value=37  Score=12.36  Aligned_cols=32  Identities=25%  Similarity=0.536  Sum_probs=17.4

Q ss_pred             HHCCCCCCHHCCCCCEEEEEEEECCCCCCHHH
Q ss_conf             10011110101356311014663078530567
Q gi|255764494|r  312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPK  343 (652)
Q Consensus       312 ~~~i~~~L~~a~~~~~~I~~V~lvGGssriP~  343 (652)
                      +..+.++|.+-++.++++--|-=+|=|+|+|.
T Consensus        28 l~~~~~al~elg~~~~~~v~vsGIGCs~r~~~   59 (280)
T PRK11867         28 LAALQRALAELGLDPENVAVVSGIGCSSRLPY   59 (280)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCCCCHH
T ss_conf             99999999983999021899963157732241


No 457
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=23.87  E-value=30  Score=13.01  Aligned_cols=34  Identities=21%  Similarity=0.171  Sum_probs=23.8

Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             3778874025788634421122222222102478
Q gi|255764494|r  142 VPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       142 VP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      .|..++.-|||.+.-|..++.=..+-|++|||+.
T Consensus       134 ~~~~LSgGqkqRv~lA~al~~~p~illLDEPt~~  167 (214)
T PRK13543        134 LVRQLSAGQRKRLALARLWLSPAPLWLLDEPYAN  167 (214)
T ss_pred             CHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             8234899999999999998579999998099888


No 458
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=23.85  E-value=37  Score=12.30  Aligned_cols=13  Identities=23%  Similarity=0.649  Sum_probs=6.2

Q ss_pred             EEEEEEEECCCCC
Q ss_conf             1101466307853
Q gi|255764494|r  327 SDIDEVVLVGGMT  339 (652)
Q Consensus       327 ~~I~~V~lvGGss  339 (652)
                      .+|..|+|.||-|
T Consensus         6 ~~i~~vILAGG~S   18 (200)
T PRK02726          6 NNLVALILAGGKS   18 (200)
T ss_pred             CCCEEEEECCCCH
T ss_conf             7717999857654


No 459
>pfam08759 DUF1792 Domain of unknown function (DUF1792). This putative domain is probably missannotated as a glycosyl transferase 8 family member. This domain is found at the C-terminus of proteins that also contain the glycosyl transferase domain at the N-terminus.
Probab=23.81  E-value=37  Score=12.29  Aligned_cols=54  Identities=28%  Similarity=0.263  Sum_probs=25.6

Q ss_pred             EEECCCCCCCHHHHHHHHHH-HCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf             85377887402578863442-1122222222102478888603445655079987244
Q gi|255764494|r  140 ITVPAYFNDAQRQATKDAGR-IAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGG  196 (652)
Q Consensus       140 itVP~~f~~~qR~a~~~Aa~-~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gg  196 (652)
                      |-||+-=.-..-..++++++ .+.=..+-+.--|||..|+|-+.+..   .=++|+|+
T Consensus       144 IicPsknAy~~yd~I~e~i~~~~k~~LiLlaLGPTAkVLayDL~~~G---yQaiDIGH  198 (225)
T pfam08759       144 IICPSKNAYSKYDEIEEAIRKNAKDRLILLALGPTAKVLAYDLFKLG---YQAIDIGH  198 (225)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCC---CCEEECCC
T ss_conf             95787747999999999999846787999860861365499998557---80776376


No 460
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=23.78  E-value=28  Score=13.25  Aligned_cols=71  Identities=18%  Similarity=0.223  Sum_probs=39.2

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCC--CCCCHHHHHHHHHH---HCCCCCCCCCCCHHHH-HHHH
Q ss_conf             58719999999999999999998388473369853--778--87402578863442---1122222222102478-8886
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAY--FNDAQRQATKDAGR---IAGLDVLRIINEPTAA-ALAY  179 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~--f~~~qR~a~~~Aa~---~AGl~v~~li~EptAA-al~Y  179 (652)
                      +.++|++|.++.++.+.+.+. .-...|.++++.+  +..  -....|++.+.|.-   ..++.|-+..-....| .++|
T Consensus        22 ~~~~~~~L~a~ai~~~l~r~~-i~p~~Id~vi~G~v~~~g~~~~n~aR~~~L~aGlp~~vpa~tVn~~CaSGl~Av~~A~  100 (382)
T PRK07801         22 AGVHPADLGAHVLRGLVDRND-IDPAAVDDVIFGCVDAIGPQAGNIARTSWLAAGYPEEVPGVTVDRQCGSSQQAIHFAA  100 (382)
T ss_pred             CCCCHHHHHHHHHHHHHHHHC-CCHHHCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf             999999999999999999809-7989989899971666566556799999997699988864888412158999999999


No 461
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.75  E-value=37  Score=12.29  Aligned_cols=31  Identities=26%  Similarity=0.219  Sum_probs=13.8

Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             8874025788634421122222222102478
Q gi|255764494|r  145 YFNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       145 ~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      ..+.-|+|.+--|-.+|==.-+-|++|||.|
T Consensus       149 ~LSGGQQQRLcIARalAv~PeVlLmDEPtSA  179 (253)
T COG1117         149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSA  179 (253)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             7873467899999987269867874486422


No 462
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=23.67  E-value=32  Score=12.81  Aligned_cols=36  Identities=25%  Similarity=0.283  Sum_probs=25.1

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      --|...+.-|||.+--|-.++.=.-+-|++|||++-
T Consensus       132 r~p~~LSGGqrQRVaiARAL~~~P~vLLLDEPts~L  167 (352)
T PRK10851        132 RYPAQLSGGQKQRVALARALAVEPQILLLDEPFGAL  167 (352)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             993149999999999999986599999990887668


No 463
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=23.47  E-value=33  Score=12.67  Aligned_cols=34  Identities=24%  Similarity=0.278  Sum_probs=26.3

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             7788740257886344211222222221024788
Q gi|255764494|r  143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      |...+.-|||.+.-|-.+|.=..+-|++|||++-
T Consensus       136 ~~~LSGGqrQRV~IARALaq~P~ILLLDEPTs~L  169 (409)
T PRK09536        136 VTSLSGGERQRVLLARALAQATPVLLLDEPTASL  169 (409)
T ss_pred             HHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             0028999999999999996799989995876679


No 464
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules.  Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells.  Subsequently, virus-infected or malignantly transformed cells can be eliminated.  TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=23.43  E-value=37  Score=12.31  Aligned_cols=38  Identities=21%  Similarity=0.139  Sum_probs=22.3

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             98537788740257886344211222222221024788
Q gi|255764494|r  139 VITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       139 VitVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      +---+..++.-|||.+--|=.++.=..+-+++|||+|.
T Consensus       144 i~~~g~~LSgGqkQRialARal~~~p~ililDEptSaL  181 (226)
T cd03248         144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSAL  181 (226)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             16848876999999999999997599999997976688


No 465
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter.  The CCM family is involved in bacterial cytochrome c biogenesis.  Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH).  CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH.  The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=23.40  E-value=32  Score=12.76  Aligned_cols=33  Identities=27%  Similarity=0.265  Sum_probs=24.5

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             788740257886344211222222221024788
Q gi|255764494|r  144 AYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       144 ~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      ..++.-|||.+.-|-.++.=..+-|++|||++-
T Consensus       124 ~~LSgGqkqRv~lA~al~~~p~llllDEPt~gL  156 (201)
T cd03231         124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTAL  156 (201)
T ss_pred             HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             347999999999999997499999980886557


No 466
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=23.38  E-value=31  Score=12.85  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=25.3

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|...+--|||.+--|-.++.=.-+-|++|||++-
T Consensus       145 ~~p~~LSGGqrQRVaiArAL~~~P~lLllDEPts~L  180 (377)
T PRK11607        145 RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGAL  180 (377)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             896578986878999999874499789964875447


No 467
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D.  PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.29  E-value=31  Score=12.95  Aligned_cols=37  Identities=19%  Similarity=0.234  Sum_probs=26.4

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8537788740257886344211222222221024788
Q gi|255764494|r  140 ITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       140 itVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      =--|...+.-|||.+--|-.+|-=.-+-|++||+++-
T Consensus       125 ~~~p~~LSGGqkQRVaiARAl~~~P~llllDEP~s~L  161 (232)
T cd03300         125 NRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGAL  161 (232)
T ss_pred             CCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             1996669989999999999986599999980887646


No 468
>PRK07491 consensus
Probab=23.23  E-value=30  Score=13.05  Aligned_cols=52  Identities=23%  Similarity=0.236  Sum_probs=31.0

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCC-CCCCHHHHHHHHHHHCCCC
Q ss_conf             58719999999999999999998388473369853--778-8740257886344211222
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITV--PAY-FNDAQRQATKDAGRIAGLD  164 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitV--P~~-f~~~qR~a~~~Aa~~AGl~  164 (652)
                      +.++|++|.+..++.+.+.+. .-...|+++|+..  |+. -....|++    +-.|||.
T Consensus        23 ~~~~~~~L~~~~i~~~l~r~~-l~~~~Id~Vi~G~v~~~g~g~n~aR~~----~L~aGlp   77 (392)
T PRK07491         23 ANTPAHELGAVAIKAALERAG-VDAADVSEVILGQVLTAGQGQNPARQA----SIKAGLP   77 (392)
T ss_pred             CCCCHHHHHHHHHHHHHHHHC-CCHHHCCEEEEEECCCCCCCCCHHHHH----HHHCCCC
T ss_conf             999999999999999998719-798998989999457556556199999----9976989


No 469
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=23.22  E-value=38  Score=12.21  Aligned_cols=74  Identities=23%  Similarity=0.396  Sum_probs=43.4

Q ss_pred             EEEEEECCCEEEEEEEEECC---------------CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH-----
Q ss_conf             79987244114543101023---------------1465420133224552134476655367876420134302-----
Q gi|255764494|r  189 VIVFDFGGGTFDVSLLEMGD---------------GVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLK-----  248 (652)
Q Consensus       189 vlV~D~Gggt~dvsi~~~~~---------------~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~-----  248 (652)
                      .-+==+||.|||+++--...               -.++.|. .|-+-+|=+..-..+++.|++.+ .++|+|+-     
T Consensus        42 ~s~E~wGGAtFd~~~Rfl~EdPWerLr~lr~~~pnt~lQmLl-RG~N~vGy~~ypddvv~~fv~~~-~~~GidifRiFDa  119 (499)
T PRK12330         42 WSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSKLQMLL-RGQNLLGYRHYEDEVVDRFVEKS-AENGMDVFRVFDA  119 (499)
T ss_pred             EEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCCCHHHHHHHHHHH-HHCCCCEEEEECC
T ss_conf             079803770299999874769899999999867797323131-33550564258879999999999-9769988997244


Q ss_pred             -HHHHHHHHHHHHHHHHHHH
Q ss_conf             -4478999999999988541
Q gi|255764494|r  249 -QDTLALQRLKEAAEKAKIE  267 (652)
Q Consensus       249 -~~~~a~~rL~~~~e~aK~~  267 (652)
                       .+.+.   |..+.+.+|+.
T Consensus       120 LNdv~N---m~~ai~~vk~~  136 (499)
T PRK12330        120 LNDLRN---LETSIKAVKKT  136 (499)
T ss_pred             CCCHHH---HHHHHHHHHHC
T ss_conf             445777---89999999971


No 470
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity.  In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs.  Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.19  E-value=29  Score=13.11  Aligned_cols=35  Identities=14%  Similarity=0.133  Sum_probs=26.3

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             53778874025788634421122222222102478
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      .-+..++--|||.+.-|+.++.=.-+-+++|||+.
T Consensus       124 ~~~~~LSgG~kqrv~la~al~~~p~lllLDEPt~g  158 (210)
T cd03269         124 KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSG  158 (210)
T ss_pred             CHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             80577899899999999999579989999288667


No 471
>PRK06690 acetyl-CoA acetyltransferase; Provisional
Probab=23.17  E-value=27  Score=13.31  Aligned_cols=50  Identities=16%  Similarity=0.266  Sum_probs=31.8

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             587199999999999999999983884733698537788740257886344211222
Q gi|255764494|r  108 KQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLD  164 (652)
Q Consensus       108 ~~~~peei~a~iL~~lk~~ae~~l~~~v~~~VitVP~~f~~~qR~a~~~Aa~~AGl~  164 (652)
                      +.++|++|.+..++.+.+.    ....|+++++..-.  ...| +.-|.|+-.|||.
T Consensus        21 ~~~~~~~L~~~~i~~l~~~----~~~~Id~vi~G~v~--~~g~-n~aR~aaL~aGlp   70 (361)
T PRK06690         21 KDYEVQQLAAPLLTFLSKG----MERAIDDVILGNVV--GPGG-NVARLSALEAGLG   70 (361)
T ss_pred             CCCCHHHHHHHHHHHHHHC----CCCCCCEEEEEECC--CCCC-HHHHHHHHHCCCC
T ss_conf             8998899999999999727----91116859999567--7675-0999999975999


No 472
>KOG3179 consensus
Probab=23.17  E-value=26  Score=13.46  Aligned_cols=10  Identities=30%  Similarity=0.478  Sum_probs=3.4

Q ss_pred             HHHHHHHCCC
Q ss_conf             1111100022
Q gi|255764494|r  366 VAMGAAIQAG  375 (652)
Q Consensus       366 Va~GAA~~a~  375 (652)
                      +++|--+.|.
T Consensus        99 ICFGHQiiar  108 (245)
T KOG3179          99 ICFGHQIIAR  108 (245)
T ss_pred             EECCHHHHHH
T ss_conf             8211799988


No 473
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.12  E-value=38  Score=12.23  Aligned_cols=24  Identities=13%  Similarity=0.369  Sum_probs=20.0

Q ss_pred             CCCCCCCCCCHHEECCCCCCCCCC
Q ss_conf             223467522100002356653222
Q gi|255764494|r  374 AGVLQGDVKDLLLLDVTPLSLGIE  397 (652)
Q Consensus       374 a~~ls~~~~~~~~~dv~p~slgie  397 (652)
                      +.++.|+++-+.++.++||+|...
T Consensus       195 GPIv~P~~~~i~itPI~PHsL~~R  218 (296)
T PRK01231        195 GPIMHPKLDAIVLVPMYPHTLSSR  218 (296)
T ss_pred             CCCCCCCCCEEEEECCCCCCCCCC
T ss_conf             954079987499943687646799


No 474
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase; InterPro: IPR011945    This entry represents a small clade of sequences from the metazoa and bacteria. In eukaryotes, this domain exists as an N-terminal fusion to the soluble epoxide hydrolase enzyme and has recently been shown to be an active phosphatase, although the nature of the biological substrate is unclear . These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs  (although the first motif is unusual in the replacement of the more common aspartate with glycine). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain indicate membership in subfamily IA..
Probab=23.05  E-value=37  Score=12.34  Aligned_cols=80  Identities=13%  Similarity=0.091  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCCC--EEEEEECCCCCCC----HH---HHHHHHHHHCCCCCCCCCCC-HHHHHHHHHCCCCC
Q ss_conf             999999999999998388473--3698537788740----25---78863442112222222210-24788886034456
Q gi|255764494|r  116 SAIVLQKMKETAESFLGETVS--KAVITVPAYFNDA----QR---QATKDAGRIAGLDVLRIINE-PTAAALAYGLDKKD  185 (652)
Q Consensus       116 ~a~iL~~lk~~ae~~l~~~v~--~~VitVP~~f~~~----qR---~a~~~Aa~~AGl~v~~li~E-ptAAal~Y~~~~~~  185 (652)
                      ++.++.++++.+...++..|.  ...--+   .++.    ++   .++...++.+||++.-|=|= +|--  .-|+-...
T Consensus        69 ~~~f~~~f~~~~~~~~~~~v~~~~~~~~l---~s~~q~tkl~p~m~~~i~~~~~~Gfkt~~lTNN~~l~~--GPGmaq~~  143 (228)
T TIGR02247        69 AEAFDELFKHKYSLKLKDDVRIKPVFELL---SSEIQVTKLLPEMVKAIKSLRAKGFKTALLTNNFYLDK--GPGMAQEA  143 (228)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEEEEE---ECCEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC--CCCHHHHC
T ss_conf             77888999998634405733431023343---06400025687899999999757775888616730567--76401220


Q ss_pred             CCEEEEEEECCCEEEE
Q ss_conf             5507998724411454
Q gi|255764494|r  186 ARTVIVFDFGGGTFDV  201 (652)
Q Consensus       186 ~~~vlV~D~Gggt~dv  201 (652)
                      .+..++.|+|. .||.
T Consensus       144 ~~~~~p~~~~~-~FD~  158 (228)
T TIGR02247       144 EEALLPSDVMA-LFDE  158 (228)
T ss_pred             CCCCCHHHHHH-HCCH
T ss_conf             46611366764-4106


No 475
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=23.05  E-value=33  Score=12.73  Aligned_cols=36  Identities=17%  Similarity=0.243  Sum_probs=26.9

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|...+.-|||.+--|-.++.=.-+-|++|||++-
T Consensus       129 r~p~~LSGGq~QRvaiARAL~~~P~illlDEP~s~L  164 (369)
T PRK11000        129 RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL  164 (369)
T ss_pred             CCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             887466942779999998862599858843666788


No 476
>COG4328 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=22.99  E-value=38  Score=12.25  Aligned_cols=10  Identities=50%  Similarity=0.797  Sum_probs=8.5

Q ss_pred             CCCEEEEECCC
Q ss_conf             98169980486
Q gi|255764494|r    1 MSKVIGIDLGT   11 (652)
Q Consensus         1 Ms~viGIDlGt   11 (652)
                      |+ .||||+|=
T Consensus         1 m~-fvGiDlaW   10 (266)
T COG4328           1 MK-FVGIDLAW   10 (266)
T ss_pred             CC-EEEEEEEC
T ss_conf             91-57754202


No 477
>PRK13320 pantothenate kinase; Reviewed
Probab=22.91  E-value=39  Score=12.17  Aligned_cols=21  Identities=33%  Similarity=0.637  Sum_probs=17.9

Q ss_pred             EEEEECCCCEEEEEEEECCEE
Q ss_conf             699804866069999989955
Q gi|255764494|r    4 VIGIDLGTTNSCVAIMDGKNV   24 (652)
Q Consensus         4 viGIDlGtt~s~va~~~~~~~   24 (652)
                      .+=||.|+|+.++++++++..
T Consensus         5 ~LliDiGNT~iK~~l~~~~~~   25 (245)
T PRK13320          5 NLVIDIGNTTTKIAVFQGDSV   25 (245)
T ss_pred             EEEEEECCCCEEEEEEECCEE
T ss_conf             999998743139999989999


No 478
>KOG0612 consensus
Probab=22.87  E-value=39  Score=12.16  Aligned_cols=24  Identities=25%  Similarity=0.173  Sum_probs=10.5

Q ss_pred             EEECCCCCC-CCCCHHHHHHHHHHH
Q ss_conf             542013322-455213447665536
Q gi|255764494|r  212 EVKATNGDT-FLGGEDFDSCLVEHI  235 (652)
Q Consensus       212 ~vl~~~gd~-~lGG~d~D~~l~~~~  235 (652)
                      +||-+-|+. .-=|..-|+.=+..|
T Consensus       246 EvLqs~~~~~g~yG~ecDwWSlGV~  270 (1317)
T KOG0612         246 EVLQSQGDGKGEYGRECDWWSLGVF  270 (1317)
T ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf             9998634776554876532456789


No 479
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain.  They export degradative enzymes by using a type I protein secretion system and  lack an N-terminal signal peptide, but contain a C-terminal secretion signal.  The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP).  For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli.  The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior.  HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels.  The spectrum of transport substra
Probab=22.86  E-value=34  Score=12.55  Aligned_cols=31  Identities=23%  Similarity=0.307  Sum_probs=20.5

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             8740257886344211222222221024788
Q gi|255764494|r  146 FNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       146 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .+.-|||.+--|-.++.=..+-+++||||+.
T Consensus        97 LSGGQkQRvalARal~~~p~ililDEpts~L  127 (173)
T cd03246          97 LSGGQRQRLGLARALYGNPRILVLDEPNSHL  127 (173)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             7699999999999982799999996876689


No 480
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274   Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC).   Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain.   Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains .    This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=22.55  E-value=39  Score=12.12  Aligned_cols=56  Identities=25%  Similarity=0.479  Sum_probs=31.0

Q ss_pred             EEEEEECCCCCCCHHHHHH-HHHHHCCCCCCCCCCCHHHHHHHHHCC------------CCCCC---EEEEEEECC
Q ss_conf             3698537788740257886-344211222222221024788886034------------45655---079987244
Q gi|255764494|r  137 KAVITVPAYFNDAQRQATK-DAGRIAGLDVLRIINEPTAAALAYGLD------------KKDAR---TVIVFDFGG  196 (652)
Q Consensus       137 ~~VitVP~~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAal~Y~~~------------~~~~~---~vlV~D~Gg  196 (652)
                      .+||+.=..=.+...+..+ ..-.+.|+|   |+.|.++... |.+.            +.+++   +|+|+|||-
T Consensus       135 ~g~I~~~~~~~~~~~~~~~f~~p~~~~~n---Lv~~Vst~~~-~~~~~~~~~~~~~~~~~~~g~~~~~Vv~~DfG~  206 (383)
T TIGR01368       135 KGVISTEDSNDEELVEKAKFESPDIDGIN---LVAEVSTKEP-YTWGQGTWNLWKFFVAKRNGKKPLRVVVIDFGV  206 (383)
T ss_pred             EEEEEECCCCHHHHHHHHHHHCCCCCCCC---CCCCEECCCC-EEECCCCCHHHHHHHHCCCCCCCEEEEEEECCC
T ss_conf             78996067670356778654246757765---2010011465-560688641664322113689735999985588


No 481
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=22.54  E-value=38  Score=12.26  Aligned_cols=36  Identities=22%  Similarity=0.145  Sum_probs=26.0

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      ..|.-.+.-|||.+--|-.+|.=.-+=+.+|||+|-
T Consensus       147 ~yP~eLSGGq~QRVaIArAL~~~P~lLi~DEPtsaL  182 (266)
T PRK10419        147 KRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNL  182 (266)
T ss_pred             CCHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             784337927877789866640698789996886536


No 482
>PRK09065 glutamine amidotransferase; Provisional
Probab=22.29  E-value=40  Score=12.08  Aligned_cols=53  Identities=19%  Similarity=0.280  Sum_probs=33.7

Q ss_pred             CCEEEEEEEECCCCCC-------HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf             6311014663078530-------567788654101111111356531011111000223467522
Q gi|255764494|r  325 SPSDIDEVVLVGGMTR-------MPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVK  382 (652)
Q Consensus       325 ~~~~I~~V~lvGGssr-------iP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~~~~  382 (652)
                      .+++.|.+++.||..-       |+.+++.|++.+...     -|--.|++|+=+.|..|-+++.
T Consensus        53 ~~~~~dg~iitGS~~~v~d~~pWi~~l~~~ir~~~~~~-----~PilGICfGhQllA~AlGG~V~  112 (238)
T PRK09065         53 APEDFAGVLITGSHAMVTDRAPWSERTADWLRQAAAAG-----MPLLGICYGHQLLAHALGGEVG  112 (238)
T ss_pred             CHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC-----CCEEEEEHHHHHHHHHHCCEEE
T ss_conf             95784889997985205799888999999999998779-----9999981778999998498797


No 483
>PRK10818 cell division inhibitor MinD; Provisional
Probab=22.22  E-value=40  Score=12.07  Aligned_cols=15  Identities=27%  Similarity=0.554  Sum_probs=5.5

Q ss_pred             CCEEEEEE--ECCCEEE
Q ss_conf             55079987--2441145
Q gi|255764494|r  186 ARTVIVFD--FGGGTFD  200 (652)
Q Consensus       186 ~~~vlV~D--~Gggt~d  200 (652)
                      ++.++++|  +|+++++
T Consensus        31 G~kVlliD~D~~~~n~~   47 (270)
T PRK10818         31 GKKTVVIDFDIGLRNLD   47 (270)
T ss_pred             CCCEEEEECCCCCCCCC
T ss_conf             99689996899998887


No 484
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos).  The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis.  Pentoses include xylose, arabinose, and ribose.  Important hexoses include glucose, galactose, and fructose.  In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains.  However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=22.14  E-value=37  Score=12.34  Aligned_cols=32  Identities=34%  Similarity=0.339  Sum_probs=23.8

Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             88740257886344211222222221024788
Q gi|255764494|r  145 YFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       145 ~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      -++--|||.+.-|..++.=.-+-+++|||++-
T Consensus        82 qLSgG~~Qrv~iaral~~~p~llilDEPt~gL  113 (163)
T cd03216          82 QLSVGERQMVEIARALARNARLLILDEPTAAL  113 (163)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             69989999999999997299999990975579


No 485
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=22.14  E-value=40  Score=12.06  Aligned_cols=41  Identities=22%  Similarity=0.247  Sum_probs=29.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             01466307853056778865410111111135653101111100
Q gi|255764494|r  329 IDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAI  372 (652)
Q Consensus       329 I~~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~  372 (652)
                      +|.  ||=|+|.-|+++..|++++|.. ..-++|-+++|+..+.
T Consensus       178 ~Dt--lVLGCTHyPll~~~i~~~~~~~-v~lids~~~~a~~~~~  218 (269)
T COG0796         178 PDT--LVLGCTHYPLLKPEIQQVLGEH-VALIDSGAETARRLAR  218 (269)
T ss_pred             CCE--EEEECCCCHHHHHHHHHHHCCC-CEEECCHHHHHHHHHH
T ss_conf             988--9991748087899999982789-5687789999999999


No 486
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787    Serine and threonine dehydratases ,  are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown  that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue.    This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=22.09  E-value=40  Score=12.06  Aligned_cols=47  Identities=30%  Similarity=0.466  Sum_probs=19.3

Q ss_pred             EEEE-EECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             0146-6307853056778865410111111135653101111100022
Q gi|255764494|r  329 IDEV-VLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAG  375 (652)
Q Consensus       329 I~~V-~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~  375 (652)
                      ||.| +-|||+--|=.|--.|+.+...--...+.|+-+-|+=+|+.|+
T Consensus       169 ~davFVpvGGGGLiAGVA~~~K~l~P~IkvIGVEp~DS~am~~sL~AG  216 (508)
T TIGR01124       169 LDAVFVPVGGGGLIAGVAALVKQLMPEIKVIGVEPTDSDAMKQSLEAG  216 (508)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCC
T ss_conf             768887117736899999999722896189974786599999998568


No 487
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=22.07  E-value=40  Score=12.05  Aligned_cols=36  Identities=17%  Similarity=0.197  Sum_probs=24.2

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             537788740257886344211222222221024788
Q gi|255764494|r  141 TVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA  176 (652)
Q Consensus       141 tVP~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAa  176 (652)
                      .-|...+.-|||.+--|-.++.=.-+-|++|||++-
T Consensus       143 r~p~~LSGGqqQRVaiARAL~~~P~vLLLDEPts~L  178 (378)
T PRK09452        143 RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSAL  178 (378)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf             683549988999999999862399899957864447


No 488
>PRK10030 putative peptidoglycan peptidase; Provisional
Probab=22.06  E-value=40  Score=12.05  Aligned_cols=16  Identities=19%  Similarity=0.443  Sum_probs=11.6

Q ss_pred             CHHHHHHHHHHCCCCC
Q ss_conf             0567788654101111
Q gi|255764494|r  340 RMPKIQQSVQDFFNKS  355 (652)
Q Consensus       340 riP~v~~~i~~~fg~~  355 (652)
                      +.|.++..+++.+|..
T Consensus       158 ~~P~~k~~~k~ryg~~  173 (199)
T PRK10030        158 SNPLVQAKLKERYGKN  173 (199)
T ss_pred             CCHHHHHHHHHHCCCC
T ss_conf             4846889999970799


No 489
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=22.01  E-value=28  Score=13.23  Aligned_cols=20  Identities=25%  Similarity=0.331  Sum_probs=0.0

Q ss_pred             CCCCCHHCCCCCEEEEEEEE
Q ss_conf             11110101356311014663
Q gi|255764494|r  315 CKKCLQDAGLSPSDIDEVVL  334 (652)
Q Consensus       315 i~~~L~~a~~~~~~I~~V~l  334 (652)
                      +.++|+++|++++|||.+++
T Consensus       297 ~~~~l~~agl~~~Did~~Ei  316 (393)
T PRK08235        297 INALLEKTGKTIEDIDLFEI  316 (393)
T ss_pred             HHHHHHHCCCCHHHCCEEEE
T ss_conf             99999984998321673241


No 490
>TIGR01234 L-ribulokinase L-ribulokinase; InterPro: IPR005929    L-ribulokinase (2.7.1.16 from EC) catalyzes the second step in arabinose catabolism.  ATP + L-ribulose = ADP + L-ribulose 5-phosphate  ; GO: 0008741 ribulokinase activity, 0019572 L-arabinose catabolic process.
Probab=21.86  E-value=30  Score=13.03  Aligned_cols=63  Identities=27%  Similarity=0.411  Sum_probs=0.0

Q ss_pred             HCCCCCCHHCCCCCEEEEEEEECCCC-CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf             00111101013563110146630785-30567788654101111111356531011111000223467
Q gi|255764494|r  313 EPCKKCLQDAGLSPSDIDEVVLVGGM-TRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG  379 (652)
Q Consensus       313 ~~i~~~L~~a~~~~~~I~~V~lvGGs-sriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~ls~  379 (652)
                      ..+-++..+.++.   ++.++..||- .+-|.+.+...+..+.++. .+..+.+-+.|++++++...+
T Consensus       445 ~~~~~~~~~~g~~---~~~~~~~gg~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~g~~~~~~~~~~  508 (563)
T TIGR01234       445 RAIVETFTDSGVP---VEELFAAGGLARKNPLLLQIYADVTNLPLK-IVGSPQAPALGAAIFAALAAG  508 (563)
T ss_pred             HHHHHHHHHCCCC---HHHHHHHCCHHHHHHHHHHHHHHHHCCCEE-EECCCCCHHHHHHHHHHHHHC
T ss_conf             7888776422651---456554323011004677766544067503-421631003445677665410


No 491
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function.  The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=21.85  E-value=40  Score=12.02  Aligned_cols=52  Identities=13%  Similarity=0.275  Sum_probs=0.0

Q ss_pred             HHHHHHCCCCCCHHCCCCCEEEEEE-EECCCCCCHHHHHHHHHHCCCC--CCCCC
Q ss_conf             0001100111101013563110146-6307853056778865410111--11113
Q gi|255764494|r  308 IQKTVEPCKKCLQDAGLSPSDIDEV-VLVGGMTRMPKIQQSVQDFFNK--SPSKG  359 (652)
Q Consensus       308 ~~~~~~~i~~~L~~a~~~~~~I~~V-~lvGGssriP~v~~~i~~~fg~--~~~~~  359 (652)
                      ...+++-|+.+|+.+|.+.++|-.+ +.+-.-+-.|.+.+.-.++|+.  .|.++
T Consensus        31 t~~~l~ni~~iL~~aG~~~~dVvk~tvyltd~~d~~~~n~v~~~~f~~~~~Part   85 (105)
T cd06150          31 TRQVLAKIDALLAEAGSDKSRILSATIWLADMADFAAMNAVWDAWVPPGHAPARA   85 (105)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf             9999999999999859998996164578259999999999999975899999658


No 492
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=21.81  E-value=35  Score=12.54  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=0.0

Q ss_pred             CCCCCCCHHHHHHHHHHHC------CCCCCCCCCCHHHH
Q ss_conf             7788740257886344211------22222222102478
Q gi|255764494|r  143 PAYFNDAQRQATKDAGRIA------GLDVLRIINEPTAA  175 (652)
Q Consensus       143 P~~f~~~qR~a~~~Aa~~A------Gl~v~~li~EptAA  175 (652)
                      |...+.-|||.+.-|..++      .=.-+-|++|||++
T Consensus       132 ~~~LSGGq~QRv~iAraL~q~~~~~~~P~lLlLDEPtsg  170 (257)
T PRK13548        132 YPTLSGGEQQRVQLARVLAQLWEPGGGPRWLLLDEPTSA  170 (257)
T ss_pred             HHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCC
T ss_conf             166999999999999999620010479988998898766


No 493
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed
Probab=21.79  E-value=26  Score=13.43  Aligned_cols=20  Identities=50%  Similarity=0.622  Sum_probs=0.0

Q ss_pred             CCCCCHHCCCCCEEEEEEEE
Q ss_conf             11110101356311014663
Q gi|255764494|r  315 CKKCLQDAGLSPSDIDEVVL  334 (652)
Q Consensus       315 i~~~L~~a~~~~~~I~~V~l  334 (652)
                      ++++|+++|++++|||.+++
T Consensus       288 ~~~~L~~agl~~~Did~~Ei  307 (387)
T PRK08947        288 TQKALKRAGLSIADIDVFEL  307 (387)
T ss_pred             HHHHHHHCCCCHHHCCEEEE
T ss_conf             99999984998655784221


No 494
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=21.68  E-value=25  Score=13.55  Aligned_cols=22  Identities=36%  Similarity=0.721  Sum_probs=0.0

Q ss_pred             HCCCCCCHHCCCCCEEEEEEEE
Q ss_conf             0011110101356311014663
Q gi|255764494|r  313 EPCKKCLQDAGLSPSDIDEVVL  334 (652)
Q Consensus       313 ~~i~~~L~~a~~~~~~I~~V~l  334 (652)
                      ..++.+|+++++.+++||.|++
T Consensus        28 ~ai~~al~~agl~~~~Id~vi~   49 (386)
T cd00751          28 AVIKALLERAGLDPEEVDDVIM   49 (386)
T ss_pred             HHHHHHHHHCCCCHHHCCEEEE
T ss_conf             9999999984989899998999


No 495
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues.  In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=21.68  E-value=23  Score=13.93  Aligned_cols=27  Identities=22%  Similarity=0.383  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCHHHHCCCCHHHHHHCCC
Q ss_conf             674435320000100110012221023
Q gi|255764494|r  459 PAPKGTPQIEVAFDIDANGIVQVSALD  485 (652)
Q Consensus       459 ~~~~G~~~I~vtf~id~nGil~Vsa~~  485 (652)
                      ..|.|...-.|+-+++.+|+|+|.|.+
T Consensus        57 ~LP~~vd~~~v~S~Ls~DGvLtIEak~   83 (83)
T cd06477          57 QLPDGVEHKDLSAMLCHDGILVVETKD   83 (83)
T ss_pred             CCCCCCCHHHEEEEECCCCEEEEEECC
T ss_conf             598996966918986799339998559


No 496
>PTZ00287 6-phosphofructokinase; Provisional
Probab=21.64  E-value=41  Score=11.99  Aligned_cols=98  Identities=12%  Similarity=0.077  Sum_probs=0.0

Q ss_pred             CEEEEEECCCCCCCCCEEEEEECCCCEE---ECHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf             9559975689862562799994899899---6678986333083511002067549868726787652019869997599
Q gi|255764494|r   22 KNVRVIENAEGTRTTPSMVGFTDEGERL---VGQPAKRQAVTNPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKG   98 (652)
Q Consensus        22 ~~~~ii~n~~g~r~~PS~V~~~~~~~~~---vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~~~   98 (652)
                      |-|..+-|.-....++++|+|+...+.+   +|.-....+...-   .|.|-|||||.-++..++--....|.-++-.+ 
T Consensus       980 GVP~TidndLk~~~IEtcvGFDT~tKvyasLIGNvltDA~Sa~K---YwhFIRLMGR~aSHivLECALQTHPNvViI~E- 1055 (1439)
T PTZ00287        980 GIPLTGSNNLIHELIETCVGFDSSTKVYASLIGNVLTDAVSMPK---YWHFIRLMGRSPSHEVLECALQTHPNMVIISE- 1055 (1439)
T ss_pred             EEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCC---EEEEEEECCCCCHHHHHHHHHHCCCCEEEEHH-
T ss_conf             64332478767762101105422788999999888876412662---27986200465047788775514896898638-


Q ss_pred             CEEEEEECCEEECHHHHHHHHHHHHHHHHH
Q ss_conf             827999579587199999999999999999
Q gi|255764494|r   99 GDAWIEAQGKQYSPSQISAIVLQKMKETAE  128 (652)
Q Consensus        99 ~~~~~~~~~~~~~peei~a~iL~~lk~~ae  128 (652)
                           ++..+..+.-+|+..|-.-+-..|+
T Consensus      1056 -----Ev~~~k~TL~~Iv~~IaD~VckRAe 1080 (1439)
T PTZ00287       1056 -----EYGAADKTLWRVVQDIADVVCARAD 1080 (1439)
T ss_pred             -----HHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             -----8554316599999999999998875


No 497
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK.  ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles.  ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP.  In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=21.61  E-value=35  Score=12.52  Aligned_cols=33  Identities=21%  Similarity=0.281  Sum_probs=0.0

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             778874025788634421122222222102478
Q gi|255764494|r  143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      |...+.-|||.+--|-.++.=.-+-|++||++|
T Consensus       128 P~~LSGGqkQRVaiARAl~~~P~lLLlDEP~sa  160 (213)
T cd03301         128 PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN  160 (213)
T ss_pred             HHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             556999999999999998759998998388764


No 498
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2  promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=21.58  E-value=41  Score=11.98  Aligned_cols=51  Identities=25%  Similarity=0.355  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH--HCCCCCEEEEEE-----------CCCCCCCHHHHHHHHHHHCC
Q ss_conf             9999999999999999998--388473369853-----------77887402578863442112
Q gi|255764494|r  112 PSQISAIVLQKMKETAESF--LGETVSKAVITV-----------PAYFNDAQRQATKDAGRIAG  162 (652)
Q Consensus       112 peei~a~iL~~lk~~ae~~--l~~~v~~~VitV-----------P~~f~~~qR~a~~~Aa~~AG  162 (652)
                      |.+....+-+-+++....-  .|.++.++-+++           |..|-.+.++|+++|++.||
T Consensus        53 p~~~~~ave~gv~~~~~~G~l~G~Pv~dvkV~L~~g~~h~~dSse~aF~~Aa~~A~r~a~~~AG  116 (116)
T cd01680          53 PAELKEAVEEGIRDACASGPLTGYPLTDVRVTVLDVPYHEGVSTEAGFRAAAGRAFESAAQKAG  116 (116)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999999759815882660799999458878988999999999999999999767


No 499
>PRK07025 consensus
Probab=21.54  E-value=22  Score=14.04  Aligned_cols=20  Identities=30%  Similarity=0.712  Sum_probs=0.0

Q ss_pred             CCCCCHHCCCCCEEEEEEEE
Q ss_conf             11110101356311014663
Q gi|255764494|r  315 CKKCLQDAGLSPSDIDEVVL  334 (652)
Q Consensus       315 i~~~L~~a~~~~~~I~~V~l  334 (652)
                      ++++|+++|++++|||-+++
T Consensus       297 ~~k~l~~agl~~~Did~~Ei  316 (393)
T PRK07025        297 SRRCLERAGWTVGDLDLMEI  316 (393)
T ss_pred             HHHHHHHCCCCCCCCCHHHH
T ss_conf             99999985998334660201


No 500
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea.  This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily.  The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.50  E-value=33  Score=12.73  Aligned_cols=33  Identities=18%  Similarity=0.143  Sum_probs=0.0

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             778874025788634421122222222102478
Q gi|255764494|r  143 PAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA  175 (652)
Q Consensus       143 P~~f~~~qR~a~~~Aa~~AGl~v~~li~EptAA  175 (652)
                      |...+--|||.+--|=.+|-=.-+-|++|||+|
T Consensus       158 P~qLSGGq~QRVaIARALa~~P~iLLlDEPtsa  190 (269)
T cd03294         158 PDELSGGMQQRVGLARALAVDPDILLMDEAFSA  190 (269)
T ss_pred             HHHHCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             678494888899999998639989997587542


Done!