>gnl|CDD|162816 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. Length = 595

Score = 955 bits (2471), Expect = 0.0 Identities = 391/600 (65%), Positives = 485/600 (80%), Gaps = 6/600 (1%) Query: 3 KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNP 62 K+IGIDLGTTNSCVA+M+G VI NAEG RTTPS+V FT GERLVGQPAKRQAVTNP Sbjct: 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNP 60 Query: 63 SNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQK 122 NTI++ KR +GRRF++ V ++A VP+K V G GGD ++ GK+Y+P +ISA++LQK Sbjct: 61 ENTIYSIKRFMGRRFDE--VTEEAKRVPYK-VVGDGGDVRVKVDGKEYTPQEISAMILQK 117 Query: 123 MKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLD 182 +K+ AE++LGE V++AVITVPAYFNDAQRQATKDAG+IAGL+VLRIINEPTAAALAYGLD Sbjct: 118 LKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 177 Query: 183 K-KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKK 241 K K ++VFD GGGTFDVS+LE+GDGVFEV +T GDT LGG+DFD +++ + D FKK Sbjct: 178 KSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKK 237 Query: 242 ENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFE 301 E GIDL +D +ALQRLKEAAEKAKIELSS TEINLPFI+A+++G +HL M LTRA+FE Sbjct: 238 EEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFE 297 Query: 302 RLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVN 361 L L+++T EP ++ L+DAGLS SDIDEV+LVGG TR+P +Q+ V+DFF K P+K VN Sbjct: 298 ELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVN 357 Query: 362 PDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVF 421 PDEVVA+GAAIQ GVL+GDVKD+LLLDVTPLSLGIETLGGV T +I+RN+TIPTKKSQVF Sbjct: 358 PDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVF 417 Query: 422 STAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQV 481 STAADNQ AV I + QGER M ADNK LG+F+L GIPPAP+G PQIEV FDIDANGI+ V Sbjct: 418 STAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHV 477 Query: 482 SALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYST 541 SA DKGTGK Q I+I AS GLS E+IE+MVK+AE NAE DKKR+E +E +N+A+SL Y Sbjct: 478 SAKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQA 537 Query: 542 EQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYE 601 E++L+E GDK+ E++ I +++ L+ L D +E IK T++L + L +A+Y+ Sbjct: 538 EKTLKEAGDKLPAEEKEKIEKAVAELKEALKGEDVEE--IKAKTEELQQALQKLAEAMYQ 595

RPSBLAST alignment for GI: 255764494 and conserved domain: TIGR02350