RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|255764494|ref|YP_003065050.2| molecular chaperone DnaK
[Candidatus Liberibacter asiaticus str. psy62]
(652 letters)
>gnl|CDD|143803 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 952 bits (2462), Expect = 0.0
Identities = 395/603 (65%), Positives = 484/603 (80%), Gaps = 10/603 (1%)
Query: 4 VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPS 63
VIGIDLGTTNSCVA+M+G VI N EG RTTPS+V FT + ERLVGQ AKRQAVTNP
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPK-ERLVGQAAKRQAVTNPK 59
Query: 64 NTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEA--QGKQYSPSQISAIVLQ 121
NT+F+ KRLIGR+F+D V +D VP+K+V+ GDA +E G+ ++P QISA+VLQ
Sbjct: 60 NTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQ 119
Query: 122 KMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGL 181
K+KETAE++LG+ V+ AVITVPAYFNDAQRQATKDAGRIAGL+VLRIINEPTAAALAYGL
Sbjct: 120 KLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGL 179
Query: 182 DKKDA-RTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK 240
DKKD R V+VFD GGGTFDVS+LE+GDGVFEV ATNGDT LGGEDFD+ LV+H + FK
Sbjct: 180 DKKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEFK 239
Query: 241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF 300
K+ GIDL +D ALQRL+EAAEKAKIELSS +QTEINLPFI+A + G + ++ LTRA+F
Sbjct: 240 KKYGIDLSKDPRALQRLREAAEKAKIELSS-NQTEINLPFITAMADG-KDVSGTLTRAKF 297
Query: 301 ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGV 360
E L L ++T+EP +K L+DA LS S+IDEVVLVGG TR+P +Q+ V++FF K PSK V
Sbjct: 298 EELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKTV 357
Query: 361 NPDEVVAMGAAIQAGVLQG--DVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKS 418
NPDE VA+GAA+QAGVL G DVKD+LLLDVTPLSLGIETLGGV T +I RN+TIPTKKS
Sbjct: 358 NPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKS 417
Query: 419 QVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGI 478
Q+FSTAADNQ+AV I++ QGER+M DNKLLG F+L GIPPAP+G PQIEV FDIDANGI
Sbjct: 418 QIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGI 477
Query: 479 VQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLI 538
+ VSA DKGTGK Q+I+I S GLS ++IE+MVKDAE A DKKR+E +E KN AE +
Sbjct: 478 LTVSAKDKGTGKEQKITITNSSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYV 537
Query: 539 YSTEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKA 598
YS E+SL+E GDK+ EA++K + E+I+ L+ L D +E I+ T++L +V +G+
Sbjct: 538 YSLEKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDKEE--IEAKTEELQKVVQPIGER 595
Query: 599 IYE 601
+Y+
Sbjct: 596 MYQ 598
>gnl|CDD|35325 KOG0102, KOG0102, KOG0102, Molecular chaperones
mortalin/PBP74/GRP75, HSP70 superfamily
[Posttranslational modification, protein turnover,
chaperones].
Length = 640
Score = 836 bits (2162), Expect = 0.0
Identities = 409/608 (67%), Positives = 488/608 (80%), Gaps = 1/608 (0%)
Query: 3 KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNP 62
KVIGIDLGTTNSCVA+M+GK ++IENAEG RTTPS+V FT +GERLVG PAKRQAVTNP
Sbjct: 28 KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNP 87
Query: 63 SNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQK 122
NT FA KRLIGRRF+D V KD VP+KIV+ GDAW+EA+GKQYSPSQI A VL K
Sbjct: 88 ENTFFATKRLIGRRFDDPEVQKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMK 147
Query: 123 MKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLD 182
MKETAE++LG+ V AVITVPAYFND+QRQATKDAG+IAGL+VLR+INEPTAAALAYGLD
Sbjct: 148 MKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLD 207
Query: 183 KKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKE 242
KK+ + VFD GGGTFD+S+LE+ DGVFEVK+TNGDT LGGEDFD+ LV I FKKE
Sbjct: 208 KKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKE 267
Query: 243 NGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFER 302
GIDL +D +ALQRL+EAAEKAKIELSS QTEINLPFI+A+++G +HLN++LTR +FE
Sbjct: 268 EGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEE 327
Query: 303 LVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNP 362
LV LI +T+EPCKK L+DA LS SDI+EV+LVGGMTRMPK+Q +V++ F K PSKGVNP
Sbjct: 328 LVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNP 387
Query: 363 DEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVFS 422
DE VA GAAIQ GVL G+VKD+LLLDVTPLSLGIETLGGVFT +I RN+TIPTKKSQVFS
Sbjct: 388 DEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFS 447
Query: 423 TAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQVS 482
TAAD Q+ V I++ QGER+M DNKLLG F L GIPPAP+G PQIEV FDIDANGI VS
Sbjct: 448 TAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGIGTVS 507
Query: 483 ALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTE 542
A DKGTGK+Q I+I +SGGLS ++IE MV +AE A DK++REA+ETKN A+S+IY TE
Sbjct: 508 AKDKGTGKSQSITIASSGGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTE 567
Query: 543 QSLREHGDKIAEAEQKSIRESIDALRTLLNDADP-DESKIKEATQKLMEVSMNLGKAIYE 601
+SL+E +KI E + + E I LR L+ + D D +IK+A L + S+ L ++ Y+
Sbjct: 568 KSLKEFEEKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYK 627
Query: 602 AQAKKDAA 609
Sbjct: 628 NMGAGGEG 635
>gnl|CDD|177026 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 802 bits (2073), Expect = 0.0
Identities = 366/636 (57%), Positives = 468/636 (73%), Gaps = 18/636 (2%)
Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60
M KV+GIDLGTTNS VA+M+G VI NAEG RTTPS+V +T +G+ LVGQ AKRQAV
Sbjct: 1 MGKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVI 60
Query: 61 NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIE--AQGKQYSPSQISAI 118
NP NT ++ KR IGR+F++ ++++A V +K+ G+ IE A K +SP +ISA
Sbjct: 61 NPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQ 118
Query: 119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALA 178
VL+K+ E A +LGETV++AVITVPAYFND+QRQATKDAG+IAGL+VLRIINEPTAA+LA
Sbjct: 119 VLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLA 178
Query: 179 YGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT 238
YGLDKK+ T++VFD GGGTFDVS+LE+GDGVFEV +T+GDT LGG+DFD +V +
Sbjct: 179 YGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKE 238
Query: 239 FKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRA 298
FKK+ GIDL +D ALQRL EAAEKAKIELS+ +QTEINLPFI+A G +H+ LTRA
Sbjct: 239 FKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRA 298
Query: 299 QFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSK 358
+FE L + LI + P + L+DA L SDIDEVVLVGG TR+P IQ+ V+ K P++
Sbjct: 299 KFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQ 358
Query: 359 GVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKS 418
VNPDEVVA+GAA+QAGVL G+VKD+LLLDVTPLSLG+ETLGGV T II RN+TIPTKKS
Sbjct: 359 SVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKS 418
Query: 419 QVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGI 478
+VFSTA DNQ+ V I + QGER++ DNK LG F L GIPPAP+G PQIEV FDIDANGI
Sbjct: 419 EVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGI 478
Query: 479 VQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLI 538
+ V+A DKGTGK Q I+IQ + L +++E+MVK+AE NA DK++RE ++ KN AESL
Sbjct: 479 LSVTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLC 538
Query: 539 YSTEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKA 598
Y E+ L+E DKI+E +++ I I LR L + + + IK ++L + M +GK
Sbjct: 539 YQAEKQLKELKDKISEEKKEKIENLIKKLRQALQNDNYES--IKSLLEELQKALMEIGKE 596
Query: 599 IYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEE 634
+Y + + D A++ DDV+D D+ E
Sbjct: 597 VYSSTSTTDPASN------------DDDVIDTDFSE 620
>gnl|CDD|30792 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 678 bits (1751), Expect = 0.0
Identities = 360/603 (59%), Positives = 446/603 (73%), Gaps = 28/603 (4%)
Query: 1 MSKVIGIDLGTTNSCVAIMDGKN-VRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAV 59
K IGIDLGTTNS VA+M G +VIENAEG R TPS+V F+ GE LVGQ AKRQAV
Sbjct: 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAV 63
Query: 60 TNPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIV 119
NP NTIF+ KR IGR G +E GK+Y+P +ISA++
Sbjct: 64 DNPENTIFSIKRKIGRG-------------------SNGLKISVEVDGKKYTPEEISAMI 104
Query: 120 LQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAY 179
L K+KE AE++LGE V+ AVITVPAYFNDAQRQATKDA RIAGL+VLR+INEPTAAALAY
Sbjct: 105 LTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAY 164
Query: 180 GLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTF 239
GLDK +TV+V+D GGGTFDVSLLE+GDGVFEV AT GD LGG+DFD+ L++++ F
Sbjct: 165 GLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEF 224
Query: 240 KKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQ 299
K + GIDL+ D ALQRL+EAAEKAKIELSS +QT INLP I + L +LTRA+
Sbjct: 225 KGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDI----DLLKELTRAK 280
Query: 300 FERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKG 359
FE L+ L+++T+EP ++ L+DAGL SDID V+LVGG TR+P +Q+ V++FF K P K
Sbjct: 281 FEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKS 340
Query: 360 VNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQ 419
+NPDE VA+GAAIQA VL G+V D+LLLDV PLSLGIETLGGV T II+RN+TIP KKSQ
Sbjct: 341 INPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQ 400
Query: 420 VFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIV 479
FSTAAD Q+AV+I + QGER+M ADNK LG+F+L GIPPAP+G PQIEV FDIDANGI+
Sbjct: 401 EFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGIL 460
Query: 480 QVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIY 539
V+A D GTGK Q I+I+AS GLS E+IE+MV+DAE NA +DKK RE VE +N AESLIY
Sbjct: 461 NVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIY 520
Query: 540 STEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAI 599
S E++L+E K++E E++ I E+I L L ++ +IK ++L EV+ L +
Sbjct: 521 SLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG---EKEEIKAKIEELQEVTQKLAEKK 576
Query: 600 YEA 602
Y+
Sbjct: 577 YQQ 579
>gnl|CDD|35323 KOG0100, KOG0100, KOG0100, Molecular chaperones GRP78/BiP/KAR2,
HSP70 superfamily [Posttranslational modification,
protein turnover, chaperones].
Length = 663
Score = 645 bits (1666), Expect = 0.0
Identities = 336/634 (52%), Positives = 444/634 (70%), Gaps = 23/634 (3%)
Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60
+ VIGIDLGTT SCV + V +I N +G R TPS V FTD+ ERL+G AK Q +
Sbjct: 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTS 93
Query: 61 NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIE-----AQGKQYSPSQI 115
NP NTIF AKRLIGR+FND +V KD +PFK+V K G +I+ + K ++P +I
Sbjct: 94 NPENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVN-KDGKPYIQVKVGGGETKVFTPEEI 152
Query: 116 SAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175
SA++L KMKETAE++LG+ V+ AV+TVPAYFNDAQRQATKDAG IAGL+V+RIINEPTAA
Sbjct: 153 SAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAA 212
Query: 176 ALAYGLDKKDA-RTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEH 234
A+AYGLDKKD + ++VFD GGGTFDVSLL + +GVFEV ATNGDT LGGEDFD ++E+
Sbjct: 213 AIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEY 272
Query: 235 ICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMK 294
+KK++G D+++D A+Q+L+ EKAK LSS Q I + + +
Sbjct: 273 FIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEI----ESLFDGVDFSET 328
Query: 295 LTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN- 353
LTRA+FE L L +KT++P +K L+D+ L SDIDE+VLVGG TR+PK+QQ ++DFFN
Sbjct: 329 LTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNG 388
Query: 354 KSPSKGVNPDEVVAMGAAIQAGVLQG--DVKDLLLLDVTPLSLGIETLGGVFTSIIDRNS 411
K PSKG+NPDE VA GAA+QAGVL G D D++LLDV PL+LGIET+GGV T +I RN+
Sbjct: 389 KEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNPLTLGIETVGGVMTKLIPRNT 448
Query: 412 TIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAF 471
IPTKKSQVFSTA DNQ V+I++ +GER M DN LLG+FDL GIPPAP+G PQIEV F
Sbjct: 449 VIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTF 508
Query: 472 DIDANGIVQVSALDKGTGKAQQISIQASGG-LSSEDIEKMVKDAEMNAEMDKKRREAVET 530
++DANGI+QVSA DKGTGK ++I+I G L+ EDIE+MV +AE AE DKK +E +E
Sbjct: 509 EVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEA 568
Query: 531 KNHAESLIYSTEQSLREH---GDKIAEAEQKSIRESI-DALRTLLNDADPDESKIKEATQ 586
+N ES YS + + + G K+++ ++++I +++ +AL L ++ D + + KE +
Sbjct: 569 RNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKK 628
Query: 587 KLMEVSMNLGKAIYE---AQAKKDAAADTATADT 617
+L V + +Y + DT D
Sbjct: 629 ELEAVVQPIISKLYGGAGGAPEPAGEEDTDEKDE 662
>gnl|CDD|35324 KOG0101, KOG0101, KOG0101, Molecular chaperones HSP70/HSC70, HSP70
superfamily [Posttranslational modification, protein
turnover, chaperones].
Length = 620
Score = 546 bits (1407), Expect = e-156
Identities = 316/606 (52%), Positives = 416/606 (68%), Gaps = 17/606 (2%)
Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60
S IGIDLGTT SCV + V +I N +G RTTPS+V FTD ERL+G AK Q
Sbjct: 6 ESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDT-ERLIGDAAKNQVAR 64
Query: 61 NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQG----KQYSPSQIS 116
NP NT+F AKRLIGR F+D V D L PFK++ +GG I+ K ++P +IS
Sbjct: 65 NPDNTVFDAKRLIGRFFDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEIS 124
Query: 117 AIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176
++VL K+KETAE++LG+TV KAV+TVPAYFND+QR ATKDA IAGL+VLRIINEPTAAA
Sbjct: 125 SMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAALIAGLNVLRIINEPTAAA 184
Query: 177 LAYGLDKK--DARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEH 234
LAYGLDKK R V++FD GGGTFDVS+L + G+FEVKAT GDT LGGEDFD+ LV H
Sbjct: 185 LAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNH 244
Query: 235 ICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMK 294
FK++ G D+ + AL+RL+ A E+AK LSS++Q I + +
Sbjct: 245 FAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSL----YEGIDFYTS 300
Query: 295 LTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN- 353
+TRA+FE L L + T+EP +K L+DA L SDIDEVVLVGG TR+PK+Q+ ++DFFN
Sbjct: 301 ITRARFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNG 360
Query: 354 KSPSKGVNPDEVVAMGAAIQAGVLQGD----VKDLLLLDVTPLSLGIETLGGVFTSIIDR 409
K +K +NPDE VA GAA+QA +L GD ++DLLL+DV PLSLG+ET GGVFT +I R
Sbjct: 361 KELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSLGVETAGGVFTVLIPR 420
Query: 410 NSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEV 469
N++IPTKK+Q F+T +DNQ V I++ +GER M DN LLG+F+L GIPPAP+G PQIEV
Sbjct: 421 NTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 480
Query: 470 AFDIDANGIVQVSALDKGTGKAQQISIQ-ASGGLSSEDIEKMVKDAEMNAEMDKKRREAV 528
FDIDANGI+ V+A+DK TGK +I+I G LS E+IE+MV++AE D+K+++ V
Sbjct: 481 TFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKV 540
Query: 529 ETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKL 588
KN ES ++ + ++ + KI E +++ I + + + L+ E + E QK
Sbjct: 541 AAKNSLESYAFNMKATVEDEKGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKE 600
Query: 589 MEVSMN 594
+E+ N
Sbjct: 601 LELVCN 606
>gnl|CDD|35326 KOG0103, KOG0103, KOG0103, Molecular chaperones HSP105/HSP110/SSE1,
HSP70 superfamily [Posttranslational modification,
protein turnover, chaperones].
Length = 727
Score = 276 bits (706), Expect = 2e-74
Identities = 191/632 (30%), Positives = 302/632 (47%), Gaps = 59/632 (9%)
Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60
MS V+G DLG N +A+ + V+ N R TP++V F + R +G AK Q T
Sbjct: 1 MS-VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKN-RFIGVAAKNQQTT 58
Query: 61 NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQG----KQYSPSQIS 116
N NT+ KRLIGR+F+D V ++ +P +V+ K GD I+ + ++P Q+
Sbjct: 59 NVKNTVSNFKRLIGRKFSDPEVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVL 118
Query: 117 AIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176
A++L K+K TAE L VS VI VP+YF D+QR+A DA RIAGL+ LR++N+ TA A
Sbjct: 119 AMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARIAGLNPLRLMNDTTATA 178
Query: 177 LAYGLDKKD-------ARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDS 229
LAYG+ K D R V+ D G ++ VS+ G +V AT D LGG DFD
Sbjct: 179 LAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDE 238
Query: 230 CLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQ 289
L++H FK + ID++ + A RL EK K LS+ ++ +N+ +
Sbjct: 239 ALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKD--- 295
Query: 290 HLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQ 349
++ K+ R +FE L L+++ P K L DA L DI V +VGG++R+P I++ +
Sbjct: 296 -VSSKIKREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMIS 354
Query: 350 DFFNKSPSKGVNPDEVVAMGAAIQAGVLQGD--VKDLLLLDVTPLSLGIETL-----GGV 402
DFF K S+ +N DE VA GAA+Q +L V++ + D+ P S+ + + GG
Sbjct: 355 DFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPYSISLRWVKQGEDGGS 414
Query: 403 FTSIIDRNSTIPTKK------SQVFSTAA--DNQSAVSIRIGQGERKMFADNKLLGQFDL 454
T + + P+ K F+ A + + + E+ +
Sbjct: 415 VTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEF 474
Query: 455 ----VGIPPAPKGTPQIEVAF---DIDANGIVQVSALDKGTGKAQQ-------------- 493
V + G IE A DI+ + + K +
Sbjct: 475 SKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKV 534
Query: 494 ---ISIQASGGLSSEDIEK-MVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSL-REH 548
I G L ++++E + K+ +M DK +E V+ KN E +Y L ++
Sbjct: 535 DLPIEAYTKGALITDELELYIEKENKM-ILQDKLEKETVDAKNALEEYVYDMRDKLSDKY 593
Query: 549 GDKIAEAEQKSIRESIDALRTLLNDADPDESK 580
D I +AE++ +++ + L + D++K
Sbjct: 594 EDFITDAEREKLKKMLTDTEEWLYEDGEDQTK 625
>gnl|CDD|35327 KOG0104, KOG0104, KOG0104, Molecular chaperones GRP170/SIL1, HSP70
superfamily [Posttranslational modification, protein
turnover, chaperones].
Length = 902
Score = 217 bits (554), Expect = 8e-57
Identities = 182/707 (25%), Positives = 306/707 (43%), Gaps = 78/707 (11%)
Query: 2 SKVIGIDLGTTNSCVAIMD-GKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60
V+ +DLG+ VA++ G + ++ N E R TPS+V F GER+ G+ A A
Sbjct: 22 LAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKG-GERIFGEAAASMATR 80
Query: 61 NPSNTIFAAKRLIGRRFNDSTVAK-DASLVPFKIVE--GKGGDAWIEAQGKQYSPSQISA 117
P +T K L+G+ +D TV F++VE + + + ++YS ++ A
Sbjct: 81 FPQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLA 140
Query: 118 IVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAAL 177
++LQ K AE + + + VITVP +FN A+R+A A +IAGL+VL++IN+ TA AL
Sbjct: 141 MILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVAL 200
Query: 178 AYGLDKK-----DARTVIVFDFGGGTFDVSLL--------EMGDGV--FEVKATNGDTFL 222
YG+ ++ + I +D G G+ +++ E G +V D L
Sbjct: 201 NYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTL 260
Query: 223 GGEDFDSCLVEHICDTFKKENGI--DLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPF 280
GG + L +H+ + F +++ D+ + A+ +L + AE+ K LS+ S+ +
Sbjct: 261 GGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQI-- 318
Query: 281 ISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTR 340
+ +K+TR +FE L L ++ VEP L+ A LS +I++V+L GG TR
Sbjct: 319 --ESLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATR 376
Query: 341 MPKIQQSVQDFFNKSP-SKGVNPDEVVAMGAAIQAGVLQGD--VKDLLLLDVTPLSL--- 394
+PK+Q+++ K K +N DE MGA QA L VK ++D +
Sbjct: 377 VPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSFKVKPFNVVDASVYPYLVE 436
Query: 395 -----GIETLGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLL 449
GI L V + R S P KK F++ +D+ +I G N L
Sbjct: 437 FETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFP-FNINYG-----DLGQN--L 488
Query: 450 GQFDLVGIPPAPKGTPQ-------IEVAFDIDANGIVQVSALD-----KGTGKAQQISIQ 497
+L G+ A K I+ +F +D +GIV VS ++ + +
Sbjct: 489 TTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKST 548
Query: 498 ASGGLSSEDIEKMVKDAEMNAEMDKKRREAVET------KNHAESLIYSTEQSLREHGDK 551
S S+ + E+ D+ + ++K E E S TE+ E
Sbjct: 549 LSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKP 608
Query: 552 IAEAEQKS-IRESIDALRTLLNDADPDESKIKEATQKL------------MEVSMNLGKA 598
+ E + + + T + +E+ + A KL E + N +A
Sbjct: 609 TEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEA 668
Query: 599 -IYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKDDEKDKKK 644
++E Q K D A K +K V + +++D
Sbjct: 669 FLFELQDKLDDDEYAEVATEEEKKILKKKVSLL-MDWLEEDGSQTPT 714
>gnl|CDD|31275 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
[Cell division and chromosome partitioning].
Length = 342
Score = 60.2 bits (146), Expect = 2e-09
Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 66/281 (23%)
Query: 2 SKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTN 61
S IGIDLGT N+ V + V PS+V EG+
Sbjct: 6 SNDIGIDLGTANTLVYVKGKGIVL---------NEPSVVAIESEGK-------------- 42
Query: 62 PSNTIFA----AKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISA 117
+ + A AK+++GR T ++ P K G
Sbjct: 43 -TKVVLAVGEEAKQMLGR-----TPGNIVAIRPMK-------------DGVIADFEVTEL 83
Query: 118 IVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAAL 177
++ +K+ ++ + VI VP+ D +R+A K+A AG + +I EP AAA+
Sbjct: 84 MLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAI 143
Query: 178 AYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTF-LGGEDFDSCLVEHIC 236
GL + +V D GGGT +V+++ +G V + + +GG+ D ++ ++
Sbjct: 144 GAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIV------SSSSVRVGGDKMDEAIIVYV- 196
Query: 237 DTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEIN 277
+K+ + + + T AEK KIE+ S E +
Sbjct: 197 ---RKKYNLLIGERT---------AEKIKIEIGSAYPEEED 225
>gnl|CDD|34429 COG4820, EutJ, Ethanolamine utilization protein, possible
chaperonin [Amino acid transport and metabolism].
Length = 277
Score = 53.5 bits (128), Expect = 2e-07
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALA 178
+++++K+T E LG + A +P + + + AGL+VL +++EPTAA A
Sbjct: 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAA--A 134
Query: 179 YGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT 238
L D V D GGGT +S+++ G ++ G T H+
Sbjct: 135 DVLQLDDG---GVVDIGGGTTGISIVKKGKVIYSADEPTGGT-------------HMTLV 178
Query: 239 FKKENGIDLKQ 249
GI L++
Sbjct: 179 LAGNYGISLEE 189
>gnl|CDD|31190 COG0849, FtsA, Actin-like ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 418
Score = 38.6 bits (90), Expect = 0.005
Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 32/198 (16%)
Query: 161 AGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDT 220
AGL V I+ EP A+ALA + + V + D GGGT D+++ + G + G
Sbjct: 177 AGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRY-----TGVI 231
Query: 221 FLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQT----EI 276
+GG+ + LK E AE+ KI+ S + E
Sbjct: 232 PVGGDHVTKDI------------AKGLKTPF-------EEAERIKIKYGSALISLADDEE 272
Query: 277 NLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVG 336
+ S S + + TR++ ++ +++ +E K L+ +GL VVL G
Sbjct: 273 TIEVPSVGSDIPRQV----TRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTG 328
Query: 337 GMTRMPKIQQSVQDFFNK 354
G ++P I + + F +
Sbjct: 329 GGAQLPGIVELAERIFGR 346
>gnl|CDD|31268 COG1070, XylB, Sugar (pentulose and hexulose) kinases
[Carbohydrate transport and metabolism].
Length = 502
Score = 33.8 bits (77), Expect = 0.13
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIE 28
M V+GID+GTT+ + D V+
Sbjct: 3 MKYVLGIDIGTTSVKAVLFDEDGGEVVA 30
Score = 32.7 bits (74), Expect = 0.31
Identities = 25/114 (21%), Positives = 36/114 (31%), Gaps = 12/114 (10%)
Query: 277 NLPFISANSAGAQ-HLNMKLTRAQFERL----VNHLIQKTVEPCKKCLQDAGLSPSDIDE 331
P + G L + TRA R V + +E ++
Sbjct: 351 RGPHADPAARGGFVGLTLPHTRAHLARAVLEGVAFALADGLEALEEL------GGKPPSR 404
Query: 332 VVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLL 385
V +VGG R P Q + D P +E A+G A A G + D
Sbjct: 405 VRVVGGGARSPLWLQILADALGL-PVVVPEVEEAGALGGAALAAAALGGIYDSA 457
>gnl|CDD|145248 pfam01968, Hydantoinase_A, Hydantoinase/oxoprolinase. This family
includes the enzymes hydantoinase and oxoprolinase
EC:3.5.2.9. Both reactions involve the hydrolysis of
5-membered rings via hydrolysis of their internal imide
bonds.
Length = 285
Score = 33.4 bits (77), Expect = 0.21
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 16/103 (15%)
Query: 117 AIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLD------VLRIIN 170
A + M+ E + + I P Y + G + ++ V I++
Sbjct: 9 AYLAPIMRRYLEGVEDA-LKERGIKAPLYV-------MQSDGGLMSIEEARRKPVETILS 60
Query: 171 EPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEV 213
P A + + IV D GG + DVSL+ DG E+
Sbjct: 61 GPAAGVVGAAYTLAGLKNAIVVDMGGTSTDVSLII--DGEPEI 101
>gnl|CDD|30494 COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 674
Score = 33.5 bits (76), Expect = 0.21
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 162 GLDVLRIINEPTAAALAYG-LDKKDARTVIVFDFGGGTFDVSLLEMG 207
V I++ P A + L A IVFD GG + DV+L+ G
Sbjct: 252 EKPVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTSTDVALIIDG 298
Score = 29.2 bits (65), Expect = 3.6
Identities = 43/193 (22%), Positives = 65/193 (33%), Gaps = 37/193 (19%)
Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPS-MVGFTDEGERLVGQPAKRQAV 59
M IGID+G T + ++D + TTP G + G RL + + V
Sbjct: 1 MMLRIGIDVGGTFTDAVLLDEDGGVLATIK--VLTTPDLPSGIVNAGIRLALELLEGSEV 58
Query: 60 -------TNPSNTI---------------FAAKRLIGR----RFNDSTVAKDASLVPFKI 93
T +N + F IGR R + K LVP
Sbjct: 59 DLVVHGTTLATNALLERKGLRTALITTKGFVDLIEIGRQNRPRLYPLYIKKPKPLVPRVR 118
Query: 94 VEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSK-AVITVPAYFNDAQRQ 152
V GG + A+G+ P + +E A + V AV ++ +Y N
Sbjct: 119 V--FGGHERVGAEGEVIKPLDEEEV-----REAAAALKAAGVEAIAVSSLFSYRNPEHEL 171
Query: 153 ATKDAGRIAGLDV 165
+ R G D+
Sbjct: 172 RVAEIIREIGPDI 184
>gnl|CDD|31267 COG1069, AraB, Ribulose kinase [Energy production and conversion].
Length = 544
Score = 31.8 bits (72), Expect = 0.57
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 318 CLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVL 377
+D G++ ID + GG+ + P + Q D + P D+ V +GAA+ A V
Sbjct: 424 TFEDQGIA---IDTLFASGGIRKNPLLMQLYADVTGR-PVVIPASDQAVLLGAAMFAAVA 479
Query: 378 QGDVKDL 384
G DL
Sbjct: 480 AGVHPDL 486
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative..
Length = 106
Score = 31.3 bits (71), Expect = 0.83
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 565 DALRTLLNDA--DPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTD 622
+ L+ +L A + DE+++K L EV N+ +AI +A AAA A A A+
Sbjct: 20 ENLKKVLEAAGIEVDEARVKALVAALEEV--NIDEAIKKAAVAAAAAAPAAAAAAAAEEK 77
Query: 623 VKDDVVDADYEEIKDDE 639
++ + EE K++E
Sbjct: 78 AEEKEEEKKKEEEKEEE 94
>gnl|CDD|29417 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III
(KASIII) initiates the elongation in type II fatty acid
synthase systems. It is found in bacteria and plants.
Elongation of fatty acids in the type II systems occurs
by Claisen condensation of malonyl-acyl carrier protein
(ACP) with acyl-ACP. KASIII initiates this process by
specifically using acetyl-CoA over acyl-CoA..
Length = 320
Score = 30.5 bits (69), Expect = 1.4
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTR 340
VE KK L+DAG+ DID +++V T
Sbjct: 55 VEAAKKALEDAGIDADDID-LIIVATSTP 82
>gnl|CDD|29418 cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific
polyketide synthases (PKS) and related enzymes, also
called type III PKSs. PKS generate an array of different
products, dependent on the nature of the starter
molecule. They share a common chemical strategy, after
the starter molecule is loaded onto the active site
cysteine, a carboxylative condensation reation extends
the polyketide chain. Plant-specific PKS are dimeric
iterative PKSs, using coenzyme A esters to deliver
substrate to the active site, but they differ in the
choice of starter molecule and the number of
condensation reactions..
Length = 361
Score = 30.6 bits (69), Expect = 1.6
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 16/86 (18%)
Query: 255 QRLKEAAEKAKIE-----LSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQ 309
++LK K IE L +T P +S + + ++ R E
Sbjct: 39 EKLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDIALEEARELAEEAA----- 93
Query: 310 KTVEPCKKCLQDAGLSPSDIDEVVLV 335
+ L +AGL PSDID +V+
Sbjct: 94 ------RGALDEAGLRPSDIDHLVVN 113
>gnl|CDD|30680 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein].
Length = 323
Score = 30.2 bits (68), Expect = 2.0
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 11/127 (8%)
Query: 269 SSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSD 328
S SQ ++ ++ + L + ++ + ++ L+ AGL+P D
Sbjct: 183 SDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVFKFAVRAMPKAIEEVLEKAGLTPED 242
Query: 329 IDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGV-NPDEVVAMGAA-----IQAGVLQGDVK 382
ID V R I +++ K V D+ AA + + +G +K
Sbjct: 243 IDWFVPHQANLR---IIEAIAKKLGIPEEKVVVTVDKYGNTSAASIPLALDEALREGRIK 299
Query: 383 --DLLLL 387
DL+LL
Sbjct: 300 PGDLVLL 306
Score = 29.4 bits (66), Expect = 3.2
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 312 VEPCKKCLQDAGLSPSDIDEVVL 334
VE +K L+DAG+SP DID +++
Sbjct: 57 VEAARKALEDAGISPDDIDLIIV 79
>gnl|CDD|144616 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase,
family 1.
Length = 211
Score = 29.9 bits (68), Expect = 2.1
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 567 LRTLLNDADPDE-------SKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTA 619
L LLN+ D K KE T+ L GKA+ ++ ++A A T
Sbjct: 96 LHALLNNEDRINIELGSELKKFKEFTKGLD--PEERGKALENSEEIREAHNSFARQGQTE 153
Query: 620 KTDVKDDVV 628
D +DDV
Sbjct: 154 APDAEDDVD 162
>gnl|CDD|145766 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal
domain. This domain adopts a ribonuclease H-like fold
and is structurally related to the N-terminal domain.
Length = 193
Score = 30.0 bits (68), Expect = 2.1
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 318 CLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGV 376
L+ + ID ++ GG +R P + Q + D + P + P E A+GAA+ A V
Sbjct: 134 ILEALAELGAPIDRIIASGGGSRNPLLLQLLADALGR-PVEVPEPAEATALGAALLAAV 191
>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 30.1 bits (67), Expect = 2.2
Identities = 24/143 (16%), Positives = 62/143 (43%), Gaps = 12/143 (8%)
Query: 505 EDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESI 564
+D+E++ + + + D EA E ++ + + + E+ + +E E + + E +
Sbjct: 3835 DDLEELANEEDTANQSDLDESEARELESDMNGVT--KDSVVSENENSDSEEENQDLDEEV 3892
Query: 565 DALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDVK 624
+ + L+++ ++ + + L+E Q + +A +D +K D
Sbjct: 3893 NDIPEDLSNSLNEKLWDEPNEEDLLETE----------QKSNEQSAANNESDLVSKEDDN 3942
Query: 625 DDVVDADYEEIKDDEKDKKKLSI 647
+ D D +E +D+E+ + I
Sbjct: 3943 KALEDKDRQEKEDEEEMSDDVGI 3965
>gnl|CDD|37283 KOG2072, KOG2072, KOG2072, Translation initiation factor 3, subunit
a (eIF-3a) [Translation, ribosomal structure and
biogenesis].
Length = 988
Score = 30.0 bits (67), Expect = 2.3
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 505 EDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESI 564
++++K K + +KR+E +E +N + EQ+ + + EAE+K + E
Sbjct: 557 KNVDKEHKRILARKSLIEKRKEDLEKQNVEREAEEAQEQAKEQR--QAREAEEKRLIEEK 614
Query: 565 ---DALRTLLNDADPDESKIKEATQKLM--EVSMNLGKAIYEAQAKK 606
+A R L + ++KE ++L EV GK +K
Sbjct: 615 KEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEK 661
>gnl|CDD|29978 cd00454, Trunc_globin, Truncated hemoglobins (trHbs) are a family
of oxygen-binding heme proteins found in cyanobacteria,
eubacteria, unicellular eukaryotes, and plants. The
truncated hemoglobins have a characteristic two-over-two
alpha helical folding pattern that is distinct from the
three-over-three pattern found in other globins. A
subset of these have been demonstrated to form
homodimers..
Length = 116
Score = 29.8 bits (67), Expect = 2.4
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 8/51 (15%)
Query: 290 HLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTR 340
HL +T +F+ + L L + G+ D ++
Sbjct: 68 HLPFPITEEEFDAWLELLRD--------ALDELGVPAELADALLARAERIA 110
>gnl|CDD|144572 pfam01031, Dynamin_M, Dynamin central region. This region lies
between the GTPase domain, see pfam00350, and the
pleckstrin homology (PH) domain, see pfam00169.
Length = 295
Score = 29.8 bits (68), Expect = 2.4
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 16/65 (24%)
Query: 300 FERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEV------VLVGGMTRMP----KIQQSVQ 349
FE LV I++ EP KCL DE+ + ++R P I++ V+
Sbjct: 194 FEVLVKQQIKRLEEPALKCLDLV------YDELRKIFLKIASKELSRFPNLKEAIKEVVE 247
Query: 350 DFFNK 354
D +
Sbjct: 248 DILRE 252
>gnl|CDD|37831 KOG2620, KOG2620, KOG2620, Prohibitins and stomatins of the PID
superfamily [Energy production and conversion].
Length = 301
Score = 29.9 bits (67), Expect = 2.5
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 564 IDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAK 620
+ LR + D +P S +K A E AI E++ ++ A + A + +K
Sbjct: 143 YECLRYEIRDIEPPPS-VKRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESK 198
>gnl|CDD|37652 KOG2441, KOG2441, KOG2441, mRNA splicing factor/probable chromatin
binding snw family nuclear protein [RNA processing and
modification, Chromatin structure and dynamics].
Length = 506
Score = 29.7 bits (66), Expect = 2.9
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 521 DKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESK 580
D+K RE V + E + E+ E K+ E QK+ RE +T + + E++
Sbjct: 291 DRKAREEVRMRAQLERKM--AEKEKEEKEQKLRELAQKA-REERGGPQTGAIEKEDREAR 347
Query: 581 ----IKEATQKLMEVSMNLGKAIYEAQAK 605
I+ +K E NL +A + ++K
Sbjct: 348 TREEIRRDRRKEREKDRNLSRAAPDKRSK 376
>gnl|CDD|33230 COG3424, BcsA, Predicted naringenin-chalcone synthase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 356
Score = 29.5 bits (66), Expect = 2.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 312 VEPCKKCLQDAGLSPSDIDEVVLV 335
V+ ++ L + L P DID VV V
Sbjct: 81 VDALRRALDGSPLRPEDIDAVVTV 104
>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled
Receptor Kinase 4-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, GRK4-like group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. Members of the
GRK4-like group include GRK4, GRK5, GRK6, and similar
GRKs. GRKs in this group contain an N-terminal RGS
homology (RH) domain and a catalytic domain, but lack a
G protein betagamma-subunit binding domain. They are
localized to the plasma membrane through
post-translational lipid modification or direct binding
to PIP2.
Length = 285
Score = 29.4 bits (66), Expect = 3.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 165 VLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFE 212
+L +N +LAY + KDA +++ GG + MG+ F+
Sbjct: 53 ILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFD 100
>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 6. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK6
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK6 is widely expressed in many tissues.
t is expressed as multiple splice variants with
different domain architectures. It is
post-translationally palmitoylated and localized in the
membrane. GRK6 plays important roles in the regulation
of dopamine, M3 muscarinic, opioid, and chemokine
receptor signaling. It also plays maladaptive roles in
addiction and Parkinson's disease. GRK6-deficient mice
exhibit altered dopamine receptor regulation, decreased
lymphocyte chemotaxis, and increased acute inflammation
and neutrophil chemotaxis.
Length = 285
Score = 29.2 bits (65), Expect = 3.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 165 VLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFE 212
+L +N +LAY + KDA +++ GG + MG+ FE
Sbjct: 53 ILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFE 100
>gnl|CDD|119433 cd05173, PI3Kc_IA_beta, Phosphoinositide 3-kinase (PI3K), class IA,
beta isoform, catalytic domain; The PI3K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI3Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 3-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
or its derivatives. PI3Ks can be divided into three main
classes (I, II, and III), defined by their substrate
specificity, regulation, and domain structure. Class I
PI3Ks are the only enzymes capable of converting
PtdIns(4,5)P2 to the critical second messenger
PtdIns(3,4,5)P3. Class I enzymes are heterodimers and
exist in multiple isoforms consisting of one catalytic
subunit (out of four isoforms) and one of several
regulatory subunits. They are further classified into
class IA (alpha, beta and delta) and IB (gamma). Class
IA enzymes contain an N-terminal p85 binding domain, a
Ras binding domain, a lipid binding C2 domain, a PI3K
homology domain of unknown function, and a C-terminal
ATP-binding cataytic domain. They associate with a
regulatory subunit of the p85 family and are activated
by tyrosine kinase receptors. In addition, PI3Kbeta can
also be activated by G-protein-coupled receptors.
Deletion of PI3Kbeta in mice results in early lethality
at around day three of development. PI3Kbeta plays an
important role in regulating sustained integrin
activation and stable platelet agrregation, especially
under conditions of high shear stress..
Length = 362
Score = 29.2 bits (65), Expect = 3.7
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 22/73 (30%)
Query: 242 ENGIDLKQDTLALQRL-------KEAAEKAK---------------IELSSTSQTEINLP 279
+NG DL+QD L LQ L KEA + IE+ S+++T ++
Sbjct: 100 KNGDDLRQDMLTLQILRLMDTLWKEAGLDLRIVPYGCLATGDRSGLIEVVSSAETIADIQ 159
Query: 280 FISANSAGAQHLN 292
S+N A A N
Sbjct: 160 LNSSNVAAAAAFN 172
>gnl|CDD|147368 pfam05153, DUF706, Family of unknown function (DUF706). Family of
uncharacterized eukaryotic function. Some members have a
described putative function, but a common theme is not
evident.
Length = 248
Score = 29.2 bits (66), Expect = 4.2
Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 559 SIRESIDALRTLLNDADPD--ESKIKEATQ 586
+I E+++ L TL++++DPD +I+ Q
Sbjct: 36 TIWEALELLNTLVDESDPDTDLPQIQHLLQ 65
>gnl|CDD|29416 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
carrier protein (SCP)-x isoform and related proteins;
SCP-2 has multiple roles in intracellular lipid
circulation and metabolism. The N-terminal presequence
in the SCP-x isoform represents a peroxisomal
3-ketacyl-Coa thiolase specific for branched-chain acyl
CoAs, which is proteolytically cleaved from the sterol
carrier protein..
Length = 375
Score = 29.1 bits (65), Expect = 4.2
Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAA 371
E + L DAGL P+DID VV VG G V A GA+
Sbjct: 21 AEAARAALDDAGLEPADIDAVV-VGNAAGGRFQSFPGALIAEYLGLLGKPATRVEAAGAS 79
Query: 372 IQAGVLQG 379
A V
Sbjct: 80 GSAAVRAA 87
>gnl|CDD|36599 KOG1385, KOG1385, KOG1385, Nucleoside phosphatase [Nucleotide
transport and metabolism].
Length = 453
Score = 28.8 bits (64), Expect = 5.3
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 180 GLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEV 213
L RTV V D GGG+ ++ L + E
Sbjct: 206 TLGAPGHRTVGVVDLGGGSTQITFLPTFEDTLEA 239
>gnl|CDD|147564 pfam05451, Phytoreo_Pns, Phytoreovirus nonstructural protein
Pns10/11. This family consists of Phytoreovirus
nonstructural proteins Pns10 and Pns11. Genome segment
S11 of rice gall dwarf virus (RGDV), a member of
Phytoreovirus encodes a putative protein of 40 kDa that
exhibits approximately 37% homology at the amino acid
level to the nonstructural proteins Pns10 of rice dwarf
and wound tumour viruses, which are other members of
Phytoreovirus.
Length = 344
Score = 28.6 bits (64), Expect = 5.8
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 540 STEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEAT-QKLMEVSMNLGKA 598
TE+ +R H + + E I DA++ L D + I EA KL +
Sbjct: 4 DTERFVRLHVELLCAHEGHEIISKFDAIKKLNLTQDGGANNISEAAFSKLRNFARKSEAY 63
Query: 599 IYEAQAKKDAAADTATA 615
I A++D DT A
Sbjct: 64 IASDLAERDLTRDTHKA 80
>gnl|CDD|30900 COG0554, GlpK, Glycerol kinase [Energy production and conversion].
Length = 499
Score = 28.6 bits (64), Expect = 5.9
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 305 NHLIQKTVEPCKKCLQDAGL-------SPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPS 357
H+ + T+E Q + S + + + GG +R + Q D
Sbjct: 374 AHIARATLESI--AYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADILGVPVE 431
Query: 358 KGVNPDEVVAMGAAIQAGVLQGDVKDL 384
+ V E A+GAA AG+ G KDL
Sbjct: 432 RPVV-LETTALGAAYLAGLAVGFWKDL 457
>gnl|CDD|109812 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 28.2 bits (63), Expect = 6.8
Identities = 19/134 (14%), Positives = 51/134 (38%), Gaps = 6/134 (4%)
Query: 519 EMDKKRREAVETKNHAESLIYSTEQSLREHGDKIA--EAEQKSIRESIDALRTLLNDADP 576
E +++++E E E + ++ L E+ + E + K E L ++ +
Sbjct: 2 EAEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEE 61
Query: 577 DESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIK 636
+ +++E E L + EA A+ + ++ ++ +A +
Sbjct: 62 ENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREA----QE 117
Query: 637 DDEKDKKKLSIFLS 650
E+ +++L +
Sbjct: 118 AHERARQELLEAAA 131
>gnl|CDD|34366 COG4752, COG4752, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 190
Score = 28.4 bits (63), Expect = 7.0
Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 17/118 (14%)
Query: 102 WIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIA 161
W+ +G++Y+P++ + L ++ T E + E + K P + R I+
Sbjct: 66 WLSGEGRKYNPTRYEIVQLVRLAYTLEEVI-EDIEKEEGRRPLIVGTSARTYPNT---IS 121
Query: 162 GLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGD 219
+ I E +D +I+F G G D L+ D + E D
Sbjct: 122 YSWLRNEIQE------------RDKPWLILFGTGWGLPD-ELMNTSDYILEPIRAASD 166
>gnl|CDD|36720 KOG1507, KOG1507, KOG1507, Nucleosome assembly protein NAP-1
[Chromatin structure and dynamics, Cell cycle control,
cell division, chromosome partitioning].
Length = 358
Score = 28.0 bits (62), Expect = 8.1
Identities = 21/157 (13%), Positives = 57/157 (36%), Gaps = 2/157 (1%)
Query: 488 TGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLRE 547
+ +S + + + DA + D+ + T + + SL
Sbjct: 4 DKDSGNMSDAPTPHNTPSSASESPADAPSGSLDDESSSDEESTPKLLSA-LDGRLASLAG 62
Query: 548 HGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKD 607
+ E +++ + AL+ L + D E+K +E +L L + +++ + ++
Sbjct: 63 LLSDMVENLPPAVKNRVLALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFD-KRREI 121
Query: 608 AAADTATADTTAKTDVKDDVVDADYEEIKDDEKDKKK 644
+ + + + + E+ ++ EK+ K
Sbjct: 122 INGEVEPTEEEIEWPEEIEDEGNLAEDTEEAEKEDPK 158
>gnl|CDD|32252 COG2069, CdhD, CO dehydrogenase/acetyl-CoA synthase delta subunit
(corrinoid Fe-S protein) [Energy production and
conversion].
Length = 403
Score = 28.0 bits (62), Expect = 8.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 161 AGLDVLRIINEPTAAALAYGLD 182
GL RI+ +PT AL YG++
Sbjct: 275 RGLPRDRIVMDPTTCALGYGIE 296
>gnl|CDD|147033 pfam04675, DNA_ligase_A_N, DNA ligase N terminus. This region is
found in many but not all ATP-dependent DNA ligase
enzymes (EC:6.5.1.1). It is thought to be involved in
DNA binding and in catalysis. In human DNA ligase I, and
in Saccharomyces cerevisiae, this region was necessary
for catalysis, and separated from the amino terminus by
targeting elements. In vaccinia virus this region was
not essential for catalysis, but deletion decreases the
affinity for nicked DNA and decreased the rate of strand
joining at a step subsequent to enzyme-adenylate
formation.
Length = 177
Score = 28.0 bits (63), Expect = 8.5
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 501 GLSSEDIEKMVKD----AEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAE 556
GLS + IE++ K E+ E+ KKR++ + L T Q + E DKIA+
Sbjct: 74 GLSEDSIEELYKKVGDLGEVAEELLKKRKQTLFKP---PPL---TVQEVYETLDKIAKLS 127
Query: 557 QKSIRES-IDALRTLLNDADPDESK 580
K ++ ID L+ LL+ A P E+K
Sbjct: 128 GKGSQDEKIDLLKKLLSRATPLEAK 152
>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 5. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK5
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK5 is widely expressed in many tissues.
It associates with the membrane though an N-terminal
PIP2 binding domain and also binds phospholipids via its
C-terminus. GRK5 deficiency is associated with early
Alzheimer's disease in humans and mouse models. GRK5
also plays a crucial role in the pathogenesis of
sporadic Parkinson's disease. It participates in the
regulation and desensitization of PDGFRbeta, a receptor
tyrosine kinase involved in a variety of downstream
cellular effects including cell growth, chemotaxis,
apoptosis, and angiogenesis. GRK5 also regulates
Toll-like receptor 4, which is involved in innate and
adaptive immunity.
Length = 285
Score = 28.0 bits (62), Expect = 9.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 165 VLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFE 212
+L +N LAY + KDA +++ GG + MG+ FE
Sbjct: 53 ILEKVNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFE 100
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.313 0.130 0.352
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,079,833
Number of extensions: 369374
Number of successful extensions: 1073
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1027
Number of HSP's successfully gapped: 81
Length of query: 652
Length of database: 6,263,737
Length adjustment: 100
Effective length of query: 552
Effective length of database: 4,102,837
Effective search space: 2264766024
Effective search space used: 2264766024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.6 bits)