RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|255764494|ref|YP_003065050.2| molecular chaperone DnaK [Candidatus Liberibacter asiaticus str. psy62] (652 letters) >gnl|CDD|178963 PRK00290, dnaK, molecular chaperone DnaK; Provisional. Length = 627 Score = 1174 bits (3041), Expect = 0.0 Identities = 426/639 (66%), Positives = 519/639 (81%), Gaps = 12/639 (1%) Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60 M K+IGIDLGTTNSCVA+M+G +VIENAEG RTTPS+V FT +GERLVGQPAKRQAVT Sbjct: 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVT 60 Query: 61 NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVL 120 NP NTIF+ KRL+GRR D V KD LVP+KIV+ GDAW+E GK+Y+P +ISA++L Sbjct: 61 NPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMIL 118 Query: 121 QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG 180 QK+K+ AE +LGE V++AVITVPAYFNDAQRQATKDAG+IAGL+VLRIINEPTAAALAYG Sbjct: 119 QKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYG 178 Query: 181 LDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK 240 LDKK ++V+D GGGTFDVS+LE+GDGVFEV +TNGDT LGG+DFD +++++ D FK Sbjct: 179 LDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFK 238 Query: 241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF 300 KENGIDL++D +ALQRLKEAAEKAKIELSS QTEINLPFI+A+++G +HL +KLTRA+F Sbjct: 239 KENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKF 298 Query: 301 ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGV 360 E L L+++T+EPCK+ L+DAGLS SDIDEV+LVGG TRMP +Q+ V++FF K P+KGV Sbjct: 299 EELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGV 358 Query: 361 NPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQV 420 NPDEVVA+GAAIQ GVL GDVKD+LLLDVTPLSLGIETLGGV T +I+RN+TIPTKKSQV Sbjct: 359 NPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQV 418 Query: 421 FSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQ 480 FSTAADNQ AV+I + QGER+M ADNK LG+F+L GIPPAP+G PQIEV FDIDANGIV Sbjct: 419 FSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVH 478 Query: 481 VSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYS 540 VSA DKGTGK Q I+I AS GLS E+IE+MVKDAE NAE DKKR+E VE +N A+SLIY Sbjct: 479 VSAKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQ 538 Query: 541 TEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIY 600 TE++L+E GDK+ E++ I +I L+ L D + IK T++L + S LG+A+Y Sbjct: 539 TEKTLKELGDKVPADEKEKIEAAIKELKEALKGEDKEA--IKAKTEELTQASQKLGEAMY 596 Query: 601 EAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKDDE 639 + AA A D DDVVDA++EE+KDD+ Sbjct: 597 QQAQAAQGAAGAAAKD--------DDVVDAEFEEVKDDK 627 >gnl|CDD|162816 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. Length = 595 Score = 955 bits (2471), Expect = 0.0 Identities = 391/600 (65%), Positives = 485/600 (80%), Gaps = 6/600 (1%) Query: 3 KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNP 62 K+IGIDLGTTNSCVA+M+G VI NAEG RTTPS+V FT GERLVGQPAKRQAVTNP Sbjct: 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNP 60 Query: 63 SNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQK 122 NTI++ KR +GRRF++ V ++A VP+K V G GGD ++ GK+Y+P +ISA++LQK Sbjct: 61 ENTIYSIKRFMGRRFDE--VTEEAKRVPYK-VVGDGGDVRVKVDGKEYTPQEISAMILQK 117 Query: 123 MKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLD 182 +K+ AE++LGE V++AVITVPAYFNDAQRQATKDAG+IAGL+VLRIINEPTAAALAYGLD Sbjct: 118 LKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 177 Query: 183 K-KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKK 241 K K ++VFD GGGTFDVS+LE+GDGVFEV +T GDT LGG+DFD +++ + D FKK Sbjct: 178 KSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKK 237 Query: 242 ENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFE 301 E GIDL +D +ALQRLKEAAEKAKIELSS TEINLPFI+A+++G +HL M LTRA+FE Sbjct: 238 EEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFE 297 Query: 302 RLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVN 361 L L+++T EP ++ L+DAGLS SDIDEV+LVGG TR+P +Q+ V+DFF K P+K VN Sbjct: 298 ELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVN 357 Query: 362 PDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVF 421 PDEVVA+GAAIQ GVL+GDVKD+LLLDVTPLSLGIETLGGV T +I+RN+TIPTKKSQVF Sbjct: 358 PDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVF 417 Query: 422 STAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQV 481 STAADNQ AV I + QGER M ADNK LG+F+L GIPPAP+G PQIEV FDIDANGI+ V Sbjct: 418 STAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHV 477 Query: 482 SALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYST 541 SA DKGTGK Q I+I AS GLS E+IE+MVK+AE NAE DKKR+E +E +N+A+SL Y Sbjct: 478 SAKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQA 537 Query: 542 EQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYE 601 E++L+E GDK+ E++ I +++ L+ L D +E IK T++L + L +A+Y+ Sbjct: 538 EKTLKEAGDKLPAEEKEKIEKAVAELKEALKGEDVEE--IKAKTEELQQALQKLAEAMYQ 595 >gnl|CDD|185598 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional. Length = 663 Score = 915 bits (2366), Expect = 0.0 Identities = 395/623 (63%), Positives = 506/623 (81%), Gaps = 3/623 (0%) Query: 4 VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPS 63 ++GIDLGTTNSCVAIM+G +VIEN+EG RTTPS+V FT++G+RLVG AKRQAVTNP Sbjct: 43 IVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPE 102 Query: 64 NTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKM 123 NT+FA KRLIGRR+++ K+ ++P+KIV GDAWIEAQGK+YSPSQI A VL+KM Sbjct: 103 NTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKM 162 Query: 124 KETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDK 183 KETAES+LG V +AVITVPAYFND+QRQATKDAG+IAGLDVLRIINEPTAAALA+G+DK Sbjct: 163 KETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDK 222 Query: 184 KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKEN 243 D +T+ V+D GGGTFD+S+LE+ GVFEVKATNG+T LGGEDFD ++ ++ FKK+ Sbjct: 223 NDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQ 282 Query: 244 GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERL 303 GIDLK+D LALQRL+EAAE AKIELSS +QTEINLPFI+A+ +G +HL +KL+RA+ E L Sbjct: 283 GIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEEL 342 Query: 304 VNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPD 363 + L++KT+EPC+KC++DAG+ ++++V+LVGGMTRMPK+ ++V+ F K PSKGVNPD Sbjct: 343 THDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPD 402 Query: 364 EVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVFST 423 E VAMGAAIQAGVL+G++KDLLLLDVTPLSLGIETLGGVFT +I+RN+TIPTKKSQVFST Sbjct: 403 EAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFST 462 Query: 424 AADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQVSA 483 AADNQ+ V I++ QGER+M ADNKLLGQFDLVGIPPAP+G PQIEV FD+DANGI+ +SA Sbjct: 463 AADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNISA 522 Query: 484 LDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQ 543 +DK TGK Q+I+IQ+SGGLS E+IEKMVK+AE E D+K++E V+ KN AE+LIYS E+ Sbjct: 523 VDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEK 582 Query: 544 SLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQ 603 L + DKI++A++ +++ I LR+ L+ D D IK+ T++L E S + + Y+ Q Sbjct: 583 QLSDLKDKISDADKDELKQKITKLRSTLSSEDVDS--IKDKTKQLQEASWKISQQAYK-Q 639 Query: 604 AKKDAAADTATADTTAKTDVKDD 626 D + ++ + D+ Sbjct: 640 GNSDNQQSEQSTNSEESEEKNDN 662 >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional. Length = 653 Score = 825 bits (2133), Expect = 0.0 Identities = 359/644 (55%), Positives = 482/644 (74%), Gaps = 7/644 (1%) Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60 M KVIGIDLGTTNSCVA+++G VI N+EG RTTPS+VGF G+RLVGQ AKRQAVT Sbjct: 1 MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVT 60 Query: 61 NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVL 120 N NT+++ KR IGRR++D+ ++ S VP+ V+G+ ++ +G+ Y+P +ISA++L Sbjct: 61 NAENTVYSIKRFIGRRWDDT--EEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMIL 118 Query: 121 QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG 180 QK+K+ AE++LGE V++AVITVPAYF DAQRQATKDAG IAGL+VLRIINEPTAAALAYG Sbjct: 119 QKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYG 178 Query: 181 LDKKDA-RTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTF 239 LDK+D + ++VFD GGGTFDVS+L++GDGVFEVKAT G+ LGG+DFD+C+V+ + + F Sbjct: 179 LDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENF 238 Query: 240 KKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQ 299 +++ GIDL QD +ALQRL+EAAEKAKIELSS T INLPFI+A+ G +HL M+LTRA+ Sbjct: 239 QQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAK 298 Query: 300 FERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN-KSPSK 358 FE L L++ T+EP ++ L+DAGL P DID V+LVGG TR+P +Q+++Q FF K P + Sbjct: 299 FEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDR 358 Query: 359 GVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKS 418 VNPDE VA+GAAIQAGVL G+VKDLLLLDVTPLSLGIETLG VFT II+RN+TIPT KS Sbjct: 359 SVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKS 418 Query: 419 QVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGI 478 QVFSTA D Q++V I + QGER M DNK LG+F L GIPPAP+G PQIEV+F+ID NGI Sbjct: 419 QVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGI 478 Query: 479 VQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLI 538 ++VSA D+GTG+ Q I I +GGLSS +IE+M ++AE AE D++R++ +E KN A+SL+ Sbjct: 479 LKVSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLL 538 Query: 539 YSTEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKA 598 YS E +L+E+G+ I+E ++ + ++ L L D + ++K+ ++ + + +G Sbjct: 539 YSYESTLKENGELISEELKQRAEQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIGAE 598 Query: 599 IYEAQAKKDAAADTATADTTAKTDVKDD---VVDADYEEIKDDE 639 +Y+ + T+DT + + ++ DDE Sbjct: 599 VYQQGGSQTTDTVEPTSDTLITATMNSSNETTLIDEFNFDFDDE 642 >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional. Length = 668 Score = 782 bits (2021), Expect = 0.0 Identities = 337/648 (52%), Positives = 460/648 (70%), Gaps = 16/648 (2%) Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60 M +++GIDLGTTNS VA+M+G VI NAEG RTTPS+VGFT +GE LVGQ A+RQ V Sbjct: 1 MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVL 60 Query: 61 NPSNTIFAAKRLIGRRFNDSTVAKDASL-VPFKIVEGKGGDAWIE--AQGKQYSPSQISA 117 NP NT + KR IGRR+++ S VP+ I + G+ I+ ++++P ++SA Sbjct: 61 NPQNTFYNLKRFIGRRYDELD---PESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSA 117 Query: 118 IVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAAL 177 ++L+K+ + A +LGE V+ AVITVPAYFND+QRQAT+DAGRIAGL+V RI+NEPTAAAL Sbjct: 118 MILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAAL 177 Query: 178 AYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICD 237 AYGLD+ ++TV+VFD GGGTFDVSLLE+G+GVFEVKAT+GDT LGG DFD +V+ + + Sbjct: 178 AYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAE 237 Query: 238 TFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTR 297 F ++ GIDL++D ALQRL EAAEKAKIELS S T+I+LPFI+A G +H+ +L R Sbjct: 238 QFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDR 297 Query: 298 AQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPS 357 QFE L L+ + + P K+ L+DAGLSP DIDEVVLVGG TRMP +QQ V+ + P+ Sbjct: 298 KQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPN 357 Query: 358 KGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKK 417 + VNPDEVVA+GAAIQAG+L G++KDLLLLDVTPLSLG+ET+GGV +I RN+TIP ++ Sbjct: 358 QNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRR 417 Query: 418 SQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANG 477 S VFST+ +NQS+V I + QGER+M +DNK LG+F L GIPPAP+G PQ++VAFDIDANG Sbjct: 418 SDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANG 477 Query: 478 IVQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESL 537 I+QVSA D+ TG+ Q ++IQ + LS +++ +M+++AE A+ D++RRE +E +N A +L Sbjct: 478 ILQVSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTL 537 Query: 538 IYSTEQSLR----EHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSM 593 I E+ LR E G AE +++++ ++ ++ L D E + A L E Sbjct: 538 IAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRE--LDLAVADLQEALY 595 Query: 594 NLGKAIYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKDDEKD 641 L + + ++D +T +KD++ DY + DD D Sbjct: 596 GLNREVRAEYKEEDEGPLQGIKNTF--GSLKDELFSDDYWD--DDPWD 639 >gnl|CDD|178726 PLN03184, PLN03184, chloroplast Hsp70; Provisional. Length = 673 Score = 738 bits (1906), Expect = 0.0 Identities = 344/638 (53%), Positives = 464/638 (72%), Gaps = 10/638 (1%) Query: 3 KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNP 62 KV+GIDLGTTNS VA M+G ++ NAEG RTTPS+V +T G+RLVGQ AKRQAV NP Sbjct: 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 99 Query: 63 SNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIE--AQGKQYSPSQISAIVL 120 NT F+ KR IGR+ ++ V +++ V +++V + G+ ++ A GKQ++ +ISA VL Sbjct: 100 ENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVL 157 Query: 121 QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG 180 +K+ + A FL + V+KAVITVPAYFND+QR ATKDAGRIAGL+VLRIINEPTAA+LAYG Sbjct: 158 RKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 217 Query: 181 LDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK 240 +KK T++VFD GGGTFDVS+LE+GDGVFEV +T+GDT LGG+DFD +V+ + FK Sbjct: 218 FEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 277 Query: 241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF 300 K+ GIDL +D ALQRL EAAEKAKIELSS +QT I+LPFI+A + G +H++ LTRA+F Sbjct: 278 KDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKF 337 Query: 301 ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGV 360 E L + L+ + P + L+DA LS DIDEV+LVGG TR+P +Q+ V+ K P+ V Sbjct: 338 EELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTV 397 Query: 361 NPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQV 420 NPDEVVA+GAA+QAGVL G+V D++LLDVTPLSLG+ETLGGV T II RN+T+PT KS+V Sbjct: 398 NPDEVVALGAAVQAGVLAGEVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEV 457 Query: 421 FSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQ 480 FSTAAD Q++V I + QGER+ DNK LG F L GIPPAP+G PQIEV FDIDANGI+ Sbjct: 458 FSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILS 517 Query: 481 VSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYS 540 VSA DKGTGK Q I+I + L +++E+MV++AE A+ DK++R+AV+TKN A+S++Y Sbjct: 518 VSATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQ 577 Query: 541 TEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIY 600 TE+ L+E GDK+ ++ + + L+ + A K+K+A L + M +G+++Y Sbjct: 578 TEKQLKELGDKVPADVKEKVEAKLKELKDAI--ASGSTQKMKDAMAALNQEVMQIGQSLY 635 Query: 601 EAQAKKDA----AADTATADTTAKTDVKDDVVDADYEE 634 A + ++ +++ DDV+DAD+ + Sbjct: 636 NQPGAGGAGPAPGGEAGSSSSSSSGGDGDDVIDADFTD 673 >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional. Length = 657 Score = 729 bits (1884), Expect = 0.0 Identities = 359/615 (58%), Positives = 472/615 (76%), Gaps = 3/615 (0%) Query: 4 VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPS 63 VIG+DLGTT SCVA MDG RV+EN+EG RTTPS+V F E+LVG AKRQA+TNP Sbjct: 29 VIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGS-EKLVGLAAKRQAITNPQ 87 Query: 64 NTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIE-AQGKQYSPSQISAIVLQK 122 +T +A KRLIGRRF D + KD VP+KIV GDAW++ GKQYSPSQI A VL+K Sbjct: 88 STFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEK 147 Query: 123 MKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLD 182 MKETAE+FLG VS AV+T PAYFNDAQRQATKDAG IAGL+V+R++NEPTAAALAYG+D Sbjct: 148 MKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMD 207 Query: 183 KKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKE 242 K + V+D GGGTFD+S+LE+ GVFEVKATNGDT LGGEDFD L ++I + F+K Sbjct: 208 KTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKT 267 Query: 243 NGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFER 302 +GIDL ++ +ALQR++EAAEKAK ELSS +TE+NLPFI+AN+ GAQH+ M ++R++FE Sbjct: 268 SGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEG 327 Query: 303 LVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNP 362 + LI++++ PCK+C++DAG+ +I++VVLVGGMTRMPK+ + V+ FF K P +GVNP Sbjct: 328 ITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNP 387 Query: 363 DEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVFS 422 DE VA+GAA GVL+GDVK L+LLDVTPLSLGIETLGGVFT +I +N+TIPTKKSQ FS Sbjct: 388 DEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFS 447 Query: 423 TAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQVS 482 TAADNQ+ V I++ QGER+M ADN+++GQFDLVGIPPAP+G PQIEV FDIDANGI V+ Sbjct: 448 TAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVT 507 Query: 483 ALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTE 542 A DK TGK Q I+I A+GGLS E IE+M++D+E +AE D+ +RE VE +N+AE+ + + E Sbjct: 508 AKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAE 567 Query: 543 QSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEA 602 + L E +++AE+++++ + LR + + + + + AT KL + M G+ Y+ Sbjct: 568 RQLGEW-KYVSDAEKENVKTLVAELRKAMENPNVAKDDLAAATDKLQKAVMECGRTEYQQ 626 Query: 603 QAKKDAAADTATADT 617 A ++ + + + + Sbjct: 627 AAAANSGSSSNSGEQ 641 >gnl|CDD|185395 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional. Length = 653 Score = 673 bits (1738), Expect = 0.0 Identities = 323/622 (51%), Positives = 417/622 (67%), Gaps = 21/622 (3%) Query: 5 IGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSN 64 IGIDLGTT SCV + +NV +I N +G RTTPS V FTD ERL+G AK Q NP N Sbjct: 7 IGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPEN 65 Query: 65 TIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQ----GKQYSPSQISAIVL 120 T+F AKRLIGR+F+DS V D PFK+ G IE K + P +IS++VL Sbjct: 66 TVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVL 125 Query: 121 QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG 180 QKMKE AE++LG+ V AV+TVPAYFND+QRQATKDAG IAGL+VLRIINEPTAAA+AYG Sbjct: 126 QKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 185 Query: 181 LDKKDA--RTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT 238 LDKK + V++FD GGGTFDVSLL + DG+FEVKAT GDT LGGEDFD+ LVE Sbjct: 186 LDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQD 245 Query: 239 FKKEN-GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTR 297 FK++N G DL + AL+RL+ E+AK LSS++Q I + + N+ ++R Sbjct: 246 FKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDY----NVTISR 301 Query: 298 AQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN-KSP 356 A+FE L + T++P +K L+DAG+ + EVVLVGG TR+PK+Q ++DFFN K P Sbjct: 302 ARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEP 361 Query: 357 SKGVNPDEVVAMGAAIQAGVLQGD----VKDLLLLDVTPLSLGIETLGGVFTSIIDRNST 412 K +NPDE VA GAA+QA +L G+ V+DLLLLDVTPLSLG+ET GGV T +I+RN+T Sbjct: 362 CKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTT 421 Query: 413 IPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFD 472 IPTKKSQ+F+T ADNQ V I++ +GER M DN LLG+F L GIPPAP+G PQIEV FD Sbjct: 422 IPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFD 481 Query: 473 IDANGIVQVSALDKGTGKAQQISIQASGG-LSSEDIEKMVKDAEMNAEMDKKRREAVETK 531 IDANGI+ VSA DK TGK+ +I+I G LS DI++MV +AE D+ RE VE K Sbjct: 482 IDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAK 541 Query: 532 NHAESLIYSTEQSLREH--GDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLM 589 N E+ YS + +L++ K++++++ +I ++ID L E + E QK + Sbjct: 542 NGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEV 601 Query: 590 EVSMN-LGKAIYEAQAKKDAAA 610 E N + +Y+A Sbjct: 602 ESVCNPIMTKMYQAAGGGMPGG 623 >gnl|CDD|162645 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. Length = 599 Score = 598 bits (1545), Expect = e-171 Identities = 264/593 (44%), Positives = 373/593 (62%), Gaps = 17/593 (2%) Query: 4 VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPS 63 +GIDLGTTNS VA + V+ +AEG PS+V + +G VG+ A A +P Sbjct: 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPK 60 Query: 64 NTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKM 123 NTI + KRL+GR D K S++P++ V+G G + +P ++SA +L+K+ Sbjct: 61 NTISSVKRLMGRSIED---IKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKL 117 Query: 124 KETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDK 183 K+ AE LG + AVITVPAYF+DAQRQATKDA R+AGL+VLR++NEPTAAA+AYGLDK Sbjct: 118 KQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDK 177 Query: 184 KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKEN 243 V+D GGGTFDVS+L++ GVFEV AT GD+ LGG+DFD L + I K+ Sbjct: 178 ASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWIL----KQL 233 Query: 244 GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERL 303 GI + + L +AA AK L+ E++ + G KLTR +FE L Sbjct: 234 GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTLDGKDFKG------KLTRDEFEAL 287 Query: 304 VNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPD 363 + L+QKT+ C++ L+DAGLS +I VVLVGG TRMP ++++V + F + P ++PD Sbjct: 288 IQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPD 347 Query: 364 EVVAMGAAIQAGVLQGDV--KDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVF 421 +VVA+GAAIQA +L G+ DLLLLDVTPLSLGIET+GG+ II RN+ IP ++Q F Sbjct: 348 QVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEF 407 Query: 422 STAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQV 481 +T D Q+A+ I + QGER++ D + L +F+L GIPP G +I V F +DA+G++ V Sbjct: 408 TTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTV 467 Query: 482 SALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYST 541 SA ++ TG Q I ++ S GLS E+IE+M+KD+ +AE D R E K AE ++ + Sbjct: 468 SAQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEAL 527 Query: 542 EQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMN 594 + +L GD ++E E+ +I +++AL+ L D D IK A + L E + N Sbjct: 528 QAALAADGDLLSEDERAAIDAAMEALQKALQGDDAD--AIKAAIEALEEATDN 578 >gnl|CDD|179957 PRK05183, hscA, chaperone protein HscA; Provisional. Length = 616 Score = 597 bits (1541), Expect = e-171 Identities = 245/591 (41%), Positives = 375/591 (63%), Gaps = 23/591 (3%) Query: 5 IGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSN 64 +GIDLGTTNS VA + V+ + +G PS+V + ++G VG A+ A +P N Sbjct: 22 VGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDG-IEVGYEARANAAQDPKN 80 Query: 65 TIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIE-AQGKQYSPSQISAIVLQKM 123 TI + KR +GR D + + +P++ V + G I AQG + SP ++SA +L+ + Sbjct: 81 TISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQGLK-SPVEVSAEILKAL 137 Query: 124 KETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDK 183 ++ AE LG + AVITVPAYF+DAQRQATKDA R+AGL+VLR++NEPTAAA+AYGLD Sbjct: 138 RQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDS 197 Query: 184 KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKEN 243 + V+D GGGTFD+S+L + GVFEV AT GD+ LGG+DFD L + I ++ Sbjct: 198 GQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWI----LEQA 253 Query: 244 GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERL 303 G+ + D + L +AA AK LS E+++ A G ++TR QF L Sbjct: 254 GLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSV----ALWQG------EITREQFNAL 303 Query: 304 VNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPD 363 + L+++T+ C++ L+DAG+ ++ EVV+VGG TR+P ++++V +FF ++P ++PD Sbjct: 304 IAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPD 363 Query: 364 EVVAMGAAIQAGVLQGDV--KDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVF 421 +VVA+GAAIQA +L G+ D+LLLDV PLSLG+ET+GG+ II RN+TIP ++Q F Sbjct: 364 KVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEF 423 Query: 422 STAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQV 481 +T D Q+A++I + QGER++ AD + L +F+L GIPP G +I V F +DA+G++ V Sbjct: 424 TTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSV 483 Query: 482 SALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYST 541 +A++K TG I ++ S GL+ ++I +M+KD+ +AE D + R E K AE ++ + Sbjct: 484 TAMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEAL 543 Query: 542 EQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVS 592 + +L GD ++ AE+ +I ++ ALR + D D I+ A + L + + Sbjct: 544 QAALAADGDLLSAAERAAIDAAMAALREVAQGDDAD--AIEAAIKALDKAT 592 >gnl|CDD|167230 PRK01433, hscA, chaperone protein HscA; Provisional. Length = 595 Score = 374 bits (961), Expect = e-104 Identities = 207/608 (34%), Positives = 328/608 (53%), Gaps = 49/608 (8%) Query: 4 VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPS 63 +GID GTTNS +AI + V+VI++ + P+ + FT + Sbjct: 21 AVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNN-----------FTIGNN 69 Query: 64 NTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKM 123 + + KRL G+ + + ++ + + KQ +I+A + + Sbjct: 70 KGLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIFIYL 129 Query: 124 KETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDK 183 K AE L ++KAVITVPA+FNDA R A +IAG +VLR+I EPTAAA AYGL+K Sbjct: 130 KNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNK 189 Query: 184 KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKEN 243 +V+D GGGTFDVS+L + +G+F+V ATNGD LGG D D + +++C+ F Sbjct: 190 NQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKF---- 245 Query: 244 GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERL 303 DL LQ K+A E + T + N + N+ + + E+L Sbjct: 246 --DLPNSIDTLQLAKKAKE------TLTYKDSFN------------NDNISINKQTLEQL 285 Query: 304 VNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPD 363 + L+++T+ ++CL+ AG +P +ID V+LVGG TR+P I+ + F ++PD Sbjct: 286 ILPLVERTINIAQECLEQAG-NP-NIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPD 343 Query: 364 EVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVFST 423 + V GAA+QA L + LL+DV PLSLG+E GG+ II RN+ IP + F+T Sbjct: 344 KAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTT 403 Query: 424 AADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQVSA 483 ADNQ+ + I QGER+M AD + L +F+L G+PP G+ + EV F IDA+GI+ VSA Sbjct: 404 YADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSA 463 Query: 484 LDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQ 543 +K + + I ++ + G+ +I+ M+++A NA++D R E AE+LI++ E+ Sbjct: 464 YEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIER 523 Query: 544 SLREHGDKIAEAEQKSIRESIDAL--------RTLLNDADPD-ESKIKEATQKLMEVSMN 594 ++ E ++E+E I +D + L+N++ + +SKIK++ + + +N Sbjct: 524 AIAELTTLLSESEISIINSLLDNIKEAVHARDIILINNSIKEFKSKIKKSMDTKLNIIIN 583 Query: 595 L---GKAI 599 GK I Sbjct: 584 DLLKGKNI 591 >gnl|CDD|183274 PRK11678, PRK11678, putative chaperone; Provisional. Length = 450 Score = 83.8 bits (208), Expect = 1e-16 Identities = 75/312 (24%), Positives = 123/312 (39%), Gaps = 85/312 (27%) Query: 112 PSQISA---IV---LQKMKETAESFLGETVSKAVITVPAYFN-----DAQRQA----TKD 156 P Q++ +V + +K+ AE+ L +++AVI P F +A RQA + Sbjct: 120 PQQVALFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERA 179 Query: 157 AGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKAT 216 A R AG + EP AA L + + + V+V D GGGT D S+L MG + +A Sbjct: 180 AKR-AGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPS-WRGRAD 237 Query: 217 NGDTFL-------GGEDFDSCL-VEHICDTF----KKENGIDL----------------- 247 + L GG D D L + + + E GI L Sbjct: 238 RSASLLGHSGQRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQ 297 Query: 248 ------------------KQDTLALQRLKE------------AAEKAKIELSSTSQTEIN 277 ++ + RL + +AE+AKI LS ++T + Sbjct: 298 SDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRAS 357 Query: 278 LPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGG 337 L FIS L ++++ E ++ + + +E + L A + P D + L GG Sbjct: 358 LDFISD------GLATEISQQGLEEAISQPLARILELVQLALDQAQVKP---DVIYLTGG 408 Query: 338 MTRMPKIQQSVQ 349 R P I+ ++ Sbjct: 409 SARSPLIRAALA 420 Score = 31.4 bits (72), Expect = 0.75 Identities = 12/36 (33%), Positives = 17/36 (47%) Query: 5 IGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMV 40 IG D GT N VA+M R++ + PS + Sbjct: 3 IGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTL 38 >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 Score = 63.0 bits (154), Expect = 3e-10 Identities = 71/299 (23%), Positives = 121/299 (40%), Gaps = 103/299 (34%) Query: 2 SKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTN 61 SK IGIDLGT N+ + + GK + + E PS+V A+ Sbjct: 1 SKDIGIDLGTANT-LVYVKGKGIVLNE--------PSVV-----------------AINT 34 Query: 62 PSNTIFA----AKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISA 117 + + A AK+++GR +P I A Sbjct: 35 KTKKVLAVGNEAKKMLGR-----------------------------------TPGNIVA 59 Query: 118 IVLQKMK-------ETAESFLGETVSKA-----------VITVPAYFNDAQRQATKDAGR 159 + + +K E E+ L + K VI VP+ + +R+A K+A + Sbjct: 60 V--RPLKDGVIADFEVTEAMLKYFIKKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAK 117 Query: 160 IAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGD 219 AG + +I EP AAA+ GL ++ +V D GGGT +V+++ +G V T+ Sbjct: 118 NAGAREVFLIEEPMAAAIGAGLPVEEPTGNMVVDIGGGTTEVAVISLGGIV-----TSKS 172 Query: 220 TFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINL 278 + G++ D ++++I +K+ + + + T AE+ KIE+ S TE Sbjct: 173 VRVAGDEMDEAIIKYI----RKKYNLLIGERT---------AERIKIEIGSAYPTEEEE 218 >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. Length = 333 Score = 62.4 bits (152), Expect = 4e-10 Identities = 68/270 (25%), Positives = 121/270 (44%), Gaps = 63/270 (23%) Query: 5 IGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSN 64 IGIDLGT N+ V + G+ + + E PS+V A R + Sbjct: 5 IGIDLGTANTLVYV-KGRGIVLNE--------PSVV-------------AIRTDRDAKTK 42 Query: 65 TIFA----AKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVL 120 +I A AK ++G+ T ++ P K +G D + + +Y Q+ Sbjct: 43 SILAVGHEAKEMLGK-----TPGNIVAIRPMK--DGVIADFEVTEKMIKYFIKQVH---- 91 Query: 121 QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG 180 + +SF + VI VP+ +R+A K++ AG + +I EP AAA+ G Sbjct: 92 -----SRKSFFKPRI---VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAG 143 Query: 181 LDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK 240 L ++ +V D GGGT +V+++ +G G+ ++ +GG++FD ++ +I + Sbjct: 144 LPVEEPTGSMVVDIGGGTTEVAVISLG-GIVVSRSIR----VGGDEFDEAIINYI----R 194 Query: 241 KENGIDLKQDTLALQRLKEAAEKAKIELSS 270 + + + + T AE+ KIE+ S Sbjct: 195 RTYNLLIGEQT---------AERIKIEIGS 215 >gnl|CDD|184404 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional. Length = 335 Score = 59.8 bits (146), Expect = 2e-09 Identities = 69/297 (23%), Positives = 117/297 (39%), Gaps = 103/297 (34%) Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60 SK IGIDLGT N+ V + GK + + E PS+V A+ Sbjct: 7 FSKDIGIDLGTANTLVYV-KGKGIVLNE--------PSVV-----------------AID 40 Query: 61 NPSNTIFA----AKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQIS 116 + + A AK ++GR +P I Sbjct: 41 TKTGKVLAVGEEAKEMLGR-----------------------------------TPGNIE 65 Query: 117 AIVLQKMK-------ETAESFLGETVSKA-----------VITVPAYFNDAQRQATKDAG 158 AI + +K E E+ L + KA VI VP+ + +R+A ++A Sbjct: 66 AI--RPLKDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAA 123 Query: 159 RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNG 218 AG + +I EP AAA+ GL + +V D GGGT +V+++ +G V + Sbjct: 124 EHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIV-----YSE 178 Query: 219 DTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTE 275 + G++ D +V+++ +++ + + + T AE+ KIE+ S + Sbjct: 179 SIRVAGDEMDEAIVQYV----RRKYNLLIGERT---------AEEIKIEIGSAYPLD 222 >gnl|CDD|184402 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional. Length = 336 Score = 58.0 bits (141), Expect = 7e-09 Identities = 60/257 (23%), Positives = 99/257 (38%), Gaps = 90/257 (35%) Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60 + IGIDLGT N V + GK + + E PS+V A+ Sbjct: 2 FGRDIGIDLGTANVLV-YVKGKGIVLNE--------PSVV-----------------AID 35 Query: 61 NPSNTIFA----AKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQIS 116 +N + A A+R++GR +P I Sbjct: 36 KNTNKVLAVGEEARRMVGR-----------------------------------TPGNIV 60 Query: 117 AIVLQKMK-------ETAESFLGETVSKA-----------VITVPAYFNDAQRQATKDAG 158 AI + ++ + E L ++KA +I +P +++A ++A Sbjct: 61 AI--RPLRDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 Query: 159 RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNG 218 AG + +I EP AAA+ GLD +V D GGGT D+++L +G V T+ Sbjct: 119 EQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIV-----TSS 173 Query: 219 DTFLGGEDFDSCLVEHI 235 + G+ FD ++ +I Sbjct: 174 SIKVAGDKFDEAIIRYI 190 >gnl|CDD|131581 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein. Length = 239 Score = 54.8 bits (132), Expect = 7e-08 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 5/104 (4%) Query: 119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALA 178 +++++K+T E LG ++ A +P + + + AG++VL +++EPTAA A Sbjct: 45 IVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA--A 102 Query: 179 YGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFL 222 L K+ V D GGGT +S+L+ G ++ G T + Sbjct: 103 AVLQIKNG---AVVDVGGGTTGISILKKGKVIYSADEPTGGTHM 143 >gnl|CDD|184401 PRK13927, PRK13927, rod shape-determining protein MreB; Provisional. Length = 334 Score = 51.6 bits (125), Expect = 7e-07 Identities = 66/291 (22%), Positives = 113/291 (38%), Gaps = 102/291 (35%) Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60 S +GIDLGT N+ V + GK + + E PS+V A+ Sbjct: 4 FSNDLGIDLGTANTLV-YVKGKGIVLNE--------PSVV-----------------AIR 37 Query: 61 NPSNTIFA----AKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQIS 116 + + A AK+++GR +P I Sbjct: 38 TDTKKVLAVGEEAKQMLGR-----------------------------------TPGNIV 62 Query: 117 AIVLQKMK-------ETAESFLGETVSKA----------VITVPAYFNDAQRQATKDAGR 159 AI + MK + E L + K VI VP+ + +R+A +++ Sbjct: 63 AI--RPMKDGVIADFDVTEKMLKYFIKKVHKNFRPSPRVVICVPSGITEVERRAVRESAL 120 Query: 160 IAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGD 219 AG + +I EP AAA+ GL + +V D GGGT +V+++ +G V + Sbjct: 121 GAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIV-----YSKS 175 Query: 220 TFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSS 270 +GG+ FD ++ ++ ++ + + + T AE+ KIE+ S Sbjct: 176 VRVGGDKFDEAIINYV----RRNYNLLIGERT---------AERIKIEIGS 213 >gnl|CDD|185038 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional. Length = 267 Score = 50.6 bits (122), Expect = 1e-06 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 5/93 (5%) Query: 119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALA 178 +++++K T E LG ++ A +P ++ +A + AGL+V +++EPTAAA Sbjct: 72 IVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAV 131 Query: 179 YGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVF 211 G+ + V D GGGT +S+L+ G V+ Sbjct: 132 LGI--DNG---AVVDIGGGTTGISILKDGKVVY 159 >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional. Length = 335 Score = 50.3 bits (120), Expect = 1e-06 Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 48/233 (20%) Query: 5 IGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSN 64 IGIDLGT N V KN +I N PS+V E + ++ + Sbjct: 7 IGIDLGTANILVY---SKNKGIILNE------PSVVAVDTETKAVLAIGTE--------- 48 Query: 65 TIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMK 124 AK +IG+ T K ++ P K D I + ++ +L+++ Sbjct: 49 ----AKNMIGK-----TPGKIVAVRPMK-------DGVI-------ADYDMTTDLLKQIM 85 Query: 125 ETAESFLGETVSK--AVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLD 182 + A +G T K V+ P+ +R+A DA + G + +I EP AAA+ L Sbjct: 86 KKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLP 145 Query: 183 KKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHI 235 + +V D GGGT +V+++ G GV + +GG+ D +V + Sbjct: 146 VDEPVANVVVDIGGGTTEVAIISFG-GVVSCHSIR----IGGDQLDEDIVSFV 193 >gnl|CDD|162297 TIGR01312, XylB, D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. Length = 481 Score = 40.4 bits (95), Expect = 0.002 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 6/103 (5%) Query: 277 NLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVG 336 P + G L TRA R V + + L++AG P I + L+G Sbjct: 344 LDPQARGSFIG---LTHNTTRADLTRAVLEGVTFALRDSLDILREAGGIP--IQSIRLIG 398 Query: 337 GMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG 379 G + P +Q + D F +P +E A+GAAI A G Sbjct: 399 GGAKSPAWRQMLADIFG-TPVDVPEGEEGPALGAAILAAWALG 440 >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional. Length = 2084 Score = 39.7 bits (92), Expect = 0.003 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 8/141 (5%) Query: 507 IEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESIDA 566 ++ K AE + D+ +++A E K A++ E++ K AEA + + D Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEA-----KKAAEAAKAEAEAAADE 1358 Query: 567 LRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDV--- 623 A+ E K +EA +K + +AKK A D AD K Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418 Query: 624 KDDVVDADYEEIKDDEKDKKK 644 K D EE K ++ KKK Sbjct: 1419 KADEAKKKAEEKKKADEAKKK 1439 >gnl|CDD|183545 PRK12472, PRK12472, hypothetical protein; Provisional. Length = 508 Score = 37.2 bits (86), Expect = 0.015 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 13/147 (8%) Query: 508 EKMVKDAEMNAEM-DKKRREAVETKNHAESLIYSTEQSLR--EHGDKIAEAEQKSIRESI 564 E + ++AE A D+ + A A L + SLR E A+AE K +++ Sbjct: 193 ETLAREAEDAARAADEAKTAAAAAAREAAPL----KASLRKLERAKARADAELKRADKAL 248 Query: 565 DALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDVK 624 A +T A +E + K A Q+ E + L A +A+AK+ AAA A K Sbjct: 249 AAAKTDEAKARAEERQQK-AAQQAAEAATQLDTAKADAEAKRAAAA-ATKEAAKAAAAKK 306 Query: 625 DDVVDADYEEIKDDEKDKKKLSIFLSR 651 + A D + + +SI++SR Sbjct: 307 AETAKA----ATDAKLALEPVSIYISR 329 >gnl|CDD|182579 PRK10598, PRK10598, lipoprotein; Provisional. Length = 186 Score = 33.9 bits (78), Expect = 0.13 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 18/106 (16%) Query: 261 AEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLT-RAQ--FERLVNHLIQKTVEPCKK 317 E K+ L+ + +I+ F G+Q +MKLT +AQ F++ + K +E Sbjct: 68 EEPNKVTLTGDANLDISSLF------GSQKADMKLTLKAQPVFDKEKGAIYLKDME---- 117 Query: 318 CLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPD 363 L D + P + V+ T +P + QS++ +FN+ P+ + D Sbjct: 118 -LVDYTVQPEKMQTVM----QTLLPYLNQSLRSYFNQQPAYVLRED 158 >gnl|CDD|130301 TIGR01234, L-ribulokinase, L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. Length = 536 Score = 33.7 bits (77), Expect = 0.13 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%) Query: 317 KCLQDAGLSPSDIDEVVLVGGMTRM-PKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAG 375 + D+G+ ++E++ GG+ R P I Q D N+ P + V D+ A+GAAI A Sbjct: 427 ETFTDSGVP---VEELMAAGGIARKNPVIMQIYADVTNR-PLQIVASDQAPALGAAIFAA 482 Query: 376 VLQGDVKDL 384 V G D+ Sbjct: 483 VAAGVYADI 491 >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional. Length = 880 Score = 31.5 bits (72), Expect = 0.74 Identities = 31/170 (18%), Positives = 72/170 (42%), Gaps = 42/170 (24%) Query: 514 AEMNAEMDK---KRREAVETKNHAESLIYSTEQSL----------REHGDKIAEAEQK-- 558 AE++ E+++ +R +A ET++ A+ ++ E+ + + IAE E++ Sbjct: 216 AELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETERERE 275 Query: 559 ----SIRESIDALRTL------------LNDADPD---------ESKIKEATQKLMEVSM 593 +R+ + L L L+DAD + E + +E +L E + Sbjct: 276 ELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRV 335 Query: 594 NLGKAIYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKDDEKDKK 643 EA++ ++ A D + + + +++ EE ++ +D++ Sbjct: 336 AAQAHNEEAESLREDADDLEERAEELREEAAEL--ESELEEAREAVEDRR 383 >gnl|CDD|180722 PRK06840, PRK06840, hypothetical protein; Validated. Length = 339 Score = 30.7 bits (70), Expect = 1.2 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 7/44 (15%) Query: 312 VEPCKKCLQDAGLSPSDIDEVVLVGG-------MTRMPKIQQSV 348 + K L+ AG+ P+ ID V+ +G + PKIQ + Sbjct: 58 IAAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEI 101 >gnl|CDD|183692 PRK12704, PRK12704, phosphodiesterase; Provisional. Length = 520 Score = 30.9 bits (71), Expect = 1.2 Identities = 21/103 (20%), Positives = 51/103 (49%), Gaps = 2/103 (1%) Query: 505 EDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESI 564 E+ ++++++A+ AE KK +E K L E+ LRE +++ + E++ +++ Sbjct: 38 EEAKRILEEAKKEAEAIKKEAL-LEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKE- 95 Query: 565 DALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKD 607 + L L + E ++++ ++L + L K E + + Sbjct: 96 ENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138 >gnl|CDD|183700 PRK12721, PRK12721, secretion system apparatus protein SsaU; Reviewed. Length = 349 Score = 30.4 bits (69), Expect = 1.6 Identities = 10/26 (38%), Positives = 19/26 (73%) Query: 502 LSSEDIEKMVKDAEMNAEMDKKRREA 527 +S +D+++ KD+E + E+ +KRRE Sbjct: 215 MSKDDVKQEYKDSEGDPEIKQKRREL 240 >gnl|CDD|179223 PRK01109, PRK01109, ATP-dependent DNA ligase; Provisional. Length = 590 Score = 29.9 bits (68), Expect = 2.1 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 9/86 (10%) Query: 501 GLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSL--REHGD---KIAEA 555 G+S +++E + K ++ + R K L + +++ L +E D KIA A Sbjct: 74 GISEKEVENLYKKT---GDLGEVARRLKSKKKQKSLLAFFSKEPLTVKEVYDTLVKIALA 130 Query: 556 E-QKSIRESIDALRTLLNDADPDESK 580 + S I L LL DA P E+K Sbjct: 131 TGEGSQDLKIKLLAGLLKDASPLEAK 156 >gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116. Length = 884 Score = 29.8 bits (67), Expect = 2.6 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 2/83 (2%) Query: 547 EHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKK 606 G+K+ + + + + + + + + KI +A QK +V G + +A A K Sbjct: 575 VSGEKLDAMDDQQLSQIVPKVAVFARASPEHKMKIVKALQKRGDVVAMTGDGVNDAPALK 634 Query: 607 DAAADTATADTTAKTDVKDDVVD 629 AD A TDV + D Sbjct: 635 --LADIGVAMGQTGTDVAKEAAD 655 >gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional. Length = 809 Score = 29.8 bits (67), Expect = 2.6 Identities = 16/67 (23%), Positives = 31/67 (46%) Query: 463 GTPQIEVAFDIDANGIVQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDK 522 G+ +IEV+ D + ++ + G I Q GLS + ++V D +++ E + Sbjct: 657 GSREIEVSCLGDGSSAYVIAGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQE 716 Query: 523 KRREAVE 529 + E E Sbjct: 717 QVLELAE 723 >gnl|CDD|163397 TIGR03685, L21P_arch, 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome. Length = 105 Score = 29.6 bits (67), Expect = 2.8 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 6/91 (6%) Query: 558 KSIRESIDALRTLLNDA--DPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATA 615 K I E + L+ +L A + DE+++K L V N+ +AI +A A AAA A A Sbjct: 15 KEINE--ENLKAVLEAAGVEVDEARVKALVAALEGV--NIEEAIKKAAAAPVAAAAAAAA 70 Query: 616 DTTAKTDVKDDVVDADYEEIKDDEKDKKKLS 646 A + +++ + + E+ + +E+ L Sbjct: 71 AAAAAEEEEEEEEEEEEEKEESEEEAMAGLG 101 >gnl|CDD|183971 PRK13317, PRK13317, pantothenate kinase; Provisional. Length = 277 Score = 29.2 bits (66), Expect = 3.9 Identities = 9/33 (27%), Positives = 14/33 (42%) Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGT 33 M IGID G T + + ++ K R + Sbjct: 1 MEMKIGIDAGGTLTKIVYLEEKKQRTFKTEYSA 33 >gnl|CDD|162020 TIGR00747, fabH, 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment. Length = 318 Score = 28.9 bits (65), Expect = 4.0 Identities = 8/22 (36%), Positives = 15/22 (68%) Query: 312 VEPCKKCLQDAGLSPSDIDEVV 333 E K+ +++AG+S DID ++ Sbjct: 56 FEAAKRAIENAGISKDDIDLII 77 >gnl|CDD|161848 TIGR00381, cdhD, CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2. Length = 389 Score = 28.8 bits (64), Expect = 4.6 Identities = 9/22 (40%), Positives = 13/22 (59%) Query: 161 AGLDVLRIINEPTAAALAYGLD 182 GL I+ +PT AL YG++ Sbjct: 264 RGLMPRDIVMDPTTCALGYGIE 285 >gnl|CDD|180554 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed. Length = 106 Score = 28.8 bits (65), Expect = 4.7 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 12/89 (13%) Query: 558 KSIRESIDALRTLLNDA--DPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATA 615 K I E D L+ +L A + DE+++K L +V N+ +AI +A A AAA A A Sbjct: 15 KEINE--DNLKKVLEAAGVEVDEARVKALVAALEDV--NIEEAIKKAAAAPVAAAAAAAA 70 Query: 616 DTTAKTDVKDDVVDADYEEIKDDEKDKKK 644 A + EE +++E+ ++ Sbjct: 71 AAAAA------AAEEKKEEEEEEEEKEES 93 >gnl|CDD|152572 pfam12137, RapA_C, RNA polymerase recycling family C-terminal. This domain is found in bacteria. This domain is about 360 amino acids in length. This domain is found associated with pfam00271, pfam00176. The function of this domain is not known, but structurally it forms an alpha-beta fold in nature with a central beta-sheet flanked by helices and loops, the beta-sheet being mainly antiparallel and flanked by four alpha helices, among which the two longer helices exhibit a coiled-coil arrangement. Length = 362 Score = 28.7 bits (65), Expect = 4.9 Identities = 21/101 (20%), Positives = 49/101 (48%), Gaps = 17/101 (16%) Query: 480 QVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAE--MDKKRREAVETKNHAESL 537 Q+S +++ T A+++ ++A IE++++ AE AE +++ +A + Sbjct: 260 QLSPVNRHT--ARKL-VKAL----RPQIEQLLQKAEKLAEEQLEEIIEQAKQQMQQQ--- 309 Query: 538 IYSTE----QSLREHGDKIAEAEQKSIRESIDALRTLLNDA 574 S E ++L+ I + E +++ + + L T L+ A Sbjct: 310 -LSAELARLKALKAVNPNIRDEEIEALEQQREELLTALDKA 349 >gnl|CDD|183809 PRK12879, PRK12879, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed. Length = 325 Score = 28.7 bits (65), Expect = 5.3 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 4/37 (10%) Query: 297 RAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVV 333 R F+ V + + ++ L+ AGL+ DID V+ Sbjct: 217 REVFKWAVRTM----PKGARQVLEKAGLTKDDIDWVI 249 >gnl|CDD|181315 PRK08242, PRK08242, acetyl-CoA acetyltransferase; Validated. Length = 402 Score = 28.3 bits (64), Expect = 5.7 Identities = 8/16 (50%), Positives = 10/16 (62%) Query: 315 CKKCLQDAGLSPSDID 330 +K L AGL+ DID Sbjct: 306 TRKALAKAGLTVDDID 321 >gnl|CDD|181792 PRK09352, PRK09352, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed. Length = 319 Score = 28.5 bits (65), Expect = 5.7 Identities = 9/19 (47%), Positives = 14/19 (73%) Query: 316 KKCLQDAGLSPSDIDEVVL 334 KK L+ AG+ P DID +++ Sbjct: 61 KKALEAAGIDPEDIDLIIV 79 >gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. Length = 1164 Score = 28.1 bits (63), Expect = 6.9 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 10/97 (10%) Query: 508 EKMVKDAEMNAEMDKKRREAVETKNHAESLIYS------TEQSLREHGDKIAEAEQKSIR 561 E + AE E+ R + + K L Q L E + A I Sbjct: 375 EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADL-NAAIAGIE 433 Query: 562 ESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKA 598 I+ L D +IK+ KL +++ +L K Sbjct: 434 AKINELEEEKEDKA---LEIKKQEWKLEQLAADLSKY 467 >gnl|CDD|185543 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional. Length = 504 Score = 28.0 bits (63), Expect = 7.4 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 13/91 (14%) Query: 320 QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPD--EVVAMGAAIQAGVL 377 +DAG+ +++ + + GG+T+ + Q D K V P+ E A+GAA+ AG L Sbjct: 401 KDAGI---ELNSLRVDGGLTKNKLLMQFQADILGK---DIVVPEMAETTALGAALLAG-L 453 Query: 378 QGDVKDLLLLDVTPLSLGIETLGGVFTSIID 408 V + + I F+ + Sbjct: 454 AVGVWK----SLEEVKKLIRRSNSTFSPQMS 480 >gnl|CDD|179009 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed. Length = 782 Score = 27.9 bits (63), Expect = 7.6 Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 19/107 (17%) Query: 504 SEDIEKMVKDAEMNAEMDKKRREAVETKNH-AESLIYSTEQSLREHGDKIAEAEQKSIRE 562 E + +++ E + RE E K AE+L+ E+ E +K + +++ Sbjct: 515 KEKLNELIASLE------ELEREL-EQKAEEAEALLKEAEKLKEELEEKKEKLQEE---- 563 Query: 563 SIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAA 609 LL +A E + ++A ++ + + + K + + Q A+ Sbjct: 564 ----EDKLLEEA---EKEAQQAIKEAKKEADEIIKELRQLQKGGYAS 603 >gnl|CDD|179891 PRK04914, PRK04914, ATP-dependent helicase HepA; Validated. Length = 956 Score = 27.9 bits (63), Expect = 7.7 Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 13/99 (13%) Query: 480 QVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIY 539 Q+SA+++ T A ++ ++A +DI K+++ AE AE + + K A+ + Sbjct: 854 QLSAVNRHT--ASKL-VKAV----QQDIHKLLQKAEAQAEAQARELIE-QAKQEADEKL- 904 Query: 540 STE----QSLREHGDKIAEAEQKSIRESIDALRTLLNDA 574 S E ++L+ I + E +++ + L+ A Sbjct: 905 SAELSRLEALKAVNPNIRDDEIEALESQRQEVLEALDQA 943 >gnl|CDD|181012 PRK07515, PRK07515, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed. Length = 372 Score = 27.9 bits (63), Expect = 7.9 Identities = 8/23 (34%), Positives = 13/23 (56%) Query: 312 VEPCKKCLQDAGLSPSDIDEVVL 334 V ++ L AG + DID V++ Sbjct: 100 VAAARQALARAGRTAEDIDAVIV 122 >gnl|CDD|178007 PLN02381, PLN02381, valyl-tRNA synthetase. Length = 1066 Score = 27.9 bits (62), Expect = 8.0 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 6/72 (8%) Query: 578 ESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKD 637 E K KE K ++ + KA +AQ D T + K K DV D + E+ D Sbjct: 25 EEKAKEKELKKLKAAQKEAKAKLQAQQASDG---TNVPKKSEKKSRKRDVEDENPEDFID 81 Query: 638 DEK---DKKKLS 646 + KK+LS Sbjct: 82 PDTPFGQKKRLS 93 >gnl|CDD|181013 PRK07516, PRK07516, acetyl-CoA acetyltransferase; Provisional. Length = 389 Score = 28.0 bits (63), Expect = 8.0 Identities = 6/16 (37%), Positives = 10/16 (62%) Query: 319 LQDAGLSPSDIDEVVL 334 L AG++ D+D + L Sbjct: 34 LAHAGIAAGDVDGIFL 49 >gnl|CDD|161971 TIGR00634, recN, DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. Length = 563 Score = 27.8 bits (62), Expect = 8.2 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 12/76 (15%) Query: 517 NAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEA--EQKSIRESIDALRTLLNDA 574 E D +R +E + + ++ R++G + E + I+E +D L +D+ Sbjct: 295 ELEFDPERLNEIEER------LAQIKRLKRKYGASVEEVLEYAEKIKEELDQL----DDS 344 Query: 575 DPDESKIKEATQKLME 590 D ++E KL E Sbjct: 345 DESLEALEEEVDKLEE 360 >gnl|CDD|181161 PRK07899, rpsA, 30S ribosomal protein S1; Reviewed. Length = 486 Score = 27.7 bits (62), Expect = 9.3 Identities = 11/24 (45%), Positives = 18/24 (75%) Query: 360 VNPDEVVAMGAAIQAGVLQGDVKD 383 V+P+EVV +G ++A VLQ + K+ Sbjct: 74 VDPNEVVEVGDEVEALVLQKEDKE 97 >gnl|CDD|163023 TIGR02794, tolA_full, TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. Length = 346 Score = 27.9 bits (62), Expect = 9.5 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 10/139 (7%) Query: 506 DIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESID 565 ++E+ + + ++ ++A E + AE + AEAE+K+ E Sbjct: 93 ELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAK--AEAEAERKAKEE--- 147 Query: 566 ALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDVKD 625 +E+K K A + + KA EA+AK +A A + AK + Sbjct: 148 -----AAKQAEEEAKAKAAAEAKKKAEEAKKKAEAEAKAKAEAEAKAKAEEAKAKAEAAK 202 Query: 626 DVVDADYEEIKDDEKDKKK 644 A+ + E Sbjct: 203 AKAAAEAAAKAEAEAAAAA 221 >gnl|CDD|181385 PRK08320, PRK08320, branched-chain amino acid aminotransferase; Reviewed. Length = 288 Score = 27.5 bits (62), Expect = 9.7 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 18/55 (32%) Query: 182 DKKDARTVIVFDFGGGTFDVSLLEMGDGVFE-VKATNGDTFLGGEDFDSCLVEHI 235 K++A+ V VFD G GDGVFE ++A NG F L EHI Sbjct: 13 PKEEAK-VSVFDHG--------FLYGDGVFEGIRAYNGRVFR--------LKEHI 50 >gnl|CDD|181369 PRK08304, PRK08304, stage V sporulation protein AD; Validated. Length = 337 Score = 27.5 bits (62), Expect = 9.8 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%) Query: 313 EPCKKCLQDAGLSPSDIDEVVLVGG 337 + ++ LQ A L SDID L+ G Sbjct: 62 DAIQQALQKANLKKSDID--YLLAG 84 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.313 0.130 0.352 Gapped Lambda K H 0.267 0.0706 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 10,294,402 Number of extensions: 685190 Number of successful extensions: 1604 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1551 Number of HSP's successfully gapped: 114 Length of query: 652 Length of database: 5,994,473 Length adjustment: 100 Effective length of query: 552 Effective length of database: 3,833,673 Effective search space: 2116187496 Effective search space used: 2116187496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 60 (26.9 bits)