RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764494|ref|YP_003065050.2| molecular chaperone DnaK
[Candidatus Liberibacter asiaticus str. psy62]
         (652 letters)



>gnl|CDD|178963 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
          Length = 627

 Score = 1174 bits (3041), Expect = 0.0
 Identities = 426/639 (66%), Positives = 519/639 (81%), Gaps = 12/639 (1%)

Query: 1   MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60
           M K+IGIDLGTTNSCVA+M+G   +VIENAEG RTTPS+V FT +GERLVGQPAKRQAVT
Sbjct: 1   MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVT 60

Query: 61  NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVL 120
           NP NTIF+ KRL+GRR  D  V KD  LVP+KIV+   GDAW+E  GK+Y+P +ISA++L
Sbjct: 61  NPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMIL 118

Query: 121 QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG 180
           QK+K+ AE +LGE V++AVITVPAYFNDAQRQATKDAG+IAGL+VLRIINEPTAAALAYG
Sbjct: 119 QKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYG 178

Query: 181 LDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK 240
           LDKK    ++V+D GGGTFDVS+LE+GDGVFEV +TNGDT LGG+DFD  +++++ D FK
Sbjct: 179 LDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFK 238

Query: 241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF 300
           KENGIDL++D +ALQRLKEAAEKAKIELSS  QTEINLPFI+A+++G +HL +KLTRA+F
Sbjct: 239 KENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKF 298

Query: 301 ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGV 360
           E L   L+++T+EPCK+ L+DAGLS SDIDEV+LVGG TRMP +Q+ V++FF K P+KGV
Sbjct: 299 EELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGV 358

Query: 361 NPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQV 420
           NPDEVVA+GAAIQ GVL GDVKD+LLLDVTPLSLGIETLGGV T +I+RN+TIPTKKSQV
Sbjct: 359 NPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQV 418

Query: 421 FSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQ 480
           FSTAADNQ AV+I + QGER+M ADNK LG+F+L GIPPAP+G PQIEV FDIDANGIV 
Sbjct: 419 FSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVH 478

Query: 481 VSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYS 540
           VSA DKGTGK Q I+I AS GLS E+IE+MVKDAE NAE DKKR+E VE +N A+SLIY 
Sbjct: 479 VSAKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQ 538

Query: 541 TEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIY 600
           TE++L+E GDK+   E++ I  +I  L+  L   D +   IK  T++L + S  LG+A+Y
Sbjct: 539 TEKTLKELGDKVPADEKEKIEAAIKELKEALKGEDKEA--IKAKTEELTQASQKLGEAMY 596

Query: 601 EAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKDDE 639
           +       AA  A  D        DDVVDA++EE+KDD+
Sbjct: 597 QQAQAAQGAAGAAAKD--------DDVVDAEFEEVKDDK 627


>gnl|CDD|162816 TIGR02350, prok_dnaK, chaperone protein DnaK.  Members of this
           family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
           chaperone system. All members of the seed alignment were
           taken from completely sequenced bacterial or archaeal
           genomes and (except for Mycoplasma sequence) found
           clustered with other genes of this systems. This model
           excludes DnaK homologs that are not DnaK itself, such as
           the heat shock cognate protein HscA (TIGR01991).
           However, it is not designed to distinguish among DnaK
           paralogs in eukaryotes. Note that a number of dnaK genes
           have shadow ORFs in the same reverse (relative to dnaK)
           reading frame, a few of which have been assigned
           glutamate dehydrogenase activity. The significance of
           this observation is unclear; lengths of such shadow ORFs
           are highly variable as if the presumptive protein
           product is not conserved.
          Length = 595

 Score =  955 bits (2471), Expect = 0.0
 Identities = 391/600 (65%), Positives = 485/600 (80%), Gaps = 6/600 (1%)

Query: 3   KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNP 62
           K+IGIDLGTTNSCVA+M+G    VI NAEG RTTPS+V FT  GERLVGQPAKRQAVTNP
Sbjct: 1   KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNP 60

Query: 63  SNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQK 122
            NTI++ KR +GRRF++  V ++A  VP+K V G GGD  ++  GK+Y+P +ISA++LQK
Sbjct: 61  ENTIYSIKRFMGRRFDE--VTEEAKRVPYK-VVGDGGDVRVKVDGKEYTPQEISAMILQK 117

Query: 123 MKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLD 182
           +K+ AE++LGE V++AVITVPAYFNDAQRQATKDAG+IAGL+VLRIINEPTAAALAYGLD
Sbjct: 118 LKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 177

Query: 183 K-KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKK 241
           K K    ++VFD GGGTFDVS+LE+GDGVFEV +T GDT LGG+DFD  +++ + D FKK
Sbjct: 178 KSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKK 237

Query: 242 ENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFE 301
           E GIDL +D +ALQRLKEAAEKAKIELSS   TEINLPFI+A+++G +HL M LTRA+FE
Sbjct: 238 EEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFE 297

Query: 302 RLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVN 361
            L   L+++T EP ++ L+DAGLS SDIDEV+LVGG TR+P +Q+ V+DFF K P+K VN
Sbjct: 298 ELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVN 357

Query: 362 PDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVF 421
           PDEVVA+GAAIQ GVL+GDVKD+LLLDVTPLSLGIETLGGV T +I+RN+TIPTKKSQVF
Sbjct: 358 PDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVF 417

Query: 422 STAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQV 481
           STAADNQ AV I + QGER M ADNK LG+F+L GIPPAP+G PQIEV FDIDANGI+ V
Sbjct: 418 STAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHV 477

Query: 482 SALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYST 541
           SA DKGTGK Q I+I AS GLS E+IE+MVK+AE NAE DKKR+E +E +N+A+SL Y  
Sbjct: 478 SAKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQA 537

Query: 542 EQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYE 601
           E++L+E GDK+   E++ I +++  L+  L   D +E  IK  T++L +    L +A+Y+
Sbjct: 538 EKTLKEAGDKLPAEEKEKIEKAVAELKEALKGEDVEE--IKAKTEELQQALQKLAEAMYQ 595


>gnl|CDD|185598 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
          Length = 663

 Score =  915 bits (2366), Expect = 0.0
 Identities = 395/623 (63%), Positives = 506/623 (81%), Gaps = 3/623 (0%)

Query: 4   VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPS 63
           ++GIDLGTTNSCVAIM+G   +VIEN+EG RTTPS+V FT++G+RLVG  AKRQAVTNP 
Sbjct: 43  IVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPE 102

Query: 64  NTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKM 123
           NT+FA KRLIGRR+++    K+  ++P+KIV    GDAWIEAQGK+YSPSQI A VL+KM
Sbjct: 103 NTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKM 162

Query: 124 KETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDK 183
           KETAES+LG  V +AVITVPAYFND+QRQATKDAG+IAGLDVLRIINEPTAAALA+G+DK
Sbjct: 163 KETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDK 222

Query: 184 KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKEN 243
            D +T+ V+D GGGTFD+S+LE+  GVFEVKATNG+T LGGEDFD  ++ ++   FKK+ 
Sbjct: 223 NDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQ 282

Query: 244 GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERL 303
           GIDLK+D LALQRL+EAAE AKIELSS +QTEINLPFI+A+ +G +HL +KL+RA+ E L
Sbjct: 283 GIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEEL 342

Query: 304 VNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPD 363
            + L++KT+EPC+KC++DAG+   ++++V+LVGGMTRMPK+ ++V+  F K PSKGVNPD
Sbjct: 343 THDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPD 402

Query: 364 EVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVFST 423
           E VAMGAAIQAGVL+G++KDLLLLDVTPLSLGIETLGGVFT +I+RN+TIPTKKSQVFST
Sbjct: 403 EAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFST 462

Query: 424 AADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQVSA 483
           AADNQ+ V I++ QGER+M ADNKLLGQFDLVGIPPAP+G PQIEV FD+DANGI+ +SA
Sbjct: 463 AADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNISA 522

Query: 484 LDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQ 543
           +DK TGK Q+I+IQ+SGGLS E+IEKMVK+AE   E D+K++E V+ KN AE+LIYS E+
Sbjct: 523 VDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEK 582

Query: 544 SLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQ 603
            L +  DKI++A++  +++ I  LR+ L+  D D   IK+ T++L E S  + +  Y+ Q
Sbjct: 583 QLSDLKDKISDADKDELKQKITKLRSTLSSEDVDS--IKDKTKQLQEASWKISQQAYK-Q 639

Query: 604 AKKDAAADTATADTTAKTDVKDD 626
              D      + ++    +  D+
Sbjct: 640 GNSDNQQSEQSTNSEESEEKNDN 662


>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
          Length = 653

 Score =  825 bits (2133), Expect = 0.0
 Identities = 359/644 (55%), Positives = 482/644 (74%), Gaps = 7/644 (1%)

Query: 1   MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60
           M KVIGIDLGTTNSCVA+++G    VI N+EG RTTPS+VGF   G+RLVGQ AKRQAVT
Sbjct: 1   MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVT 60

Query: 61  NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVL 120
           N  NT+++ KR IGRR++D+   ++ S VP+  V+G+     ++ +G+ Y+P +ISA++L
Sbjct: 61  NAENTVYSIKRFIGRRWDDT--EEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMIL 118

Query: 121 QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG 180
           QK+K+ AE++LGE V++AVITVPAYF DAQRQATKDAG IAGL+VLRIINEPTAAALAYG
Sbjct: 119 QKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYG 178

Query: 181 LDKKDA-RTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTF 239
           LDK+D  + ++VFD GGGTFDVS+L++GDGVFEVKAT G+  LGG+DFD+C+V+ + + F
Sbjct: 179 LDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENF 238

Query: 240 KKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQ 299
           +++ GIDL QD +ALQRL+EAAEKAKIELSS   T INLPFI+A+  G +HL M+LTRA+
Sbjct: 239 QQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAK 298

Query: 300 FERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN-KSPSK 358
           FE L   L++ T+EP ++ L+DAGL P DID V+LVGG TR+P +Q+++Q FF  K P +
Sbjct: 299 FEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDR 358

Query: 359 GVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKS 418
            VNPDE VA+GAAIQAGVL G+VKDLLLLDVTPLSLGIETLG VFT II+RN+TIPT KS
Sbjct: 359 SVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKS 418

Query: 419 QVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGI 478
           QVFSTA D Q++V I + QGER M  DNK LG+F L GIPPAP+G PQIEV+F+ID NGI
Sbjct: 419 QVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGI 478

Query: 479 VQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLI 538
           ++VSA D+GTG+ Q I I  +GGLSS +IE+M ++AE  AE D++R++ +E KN A+SL+
Sbjct: 479 LKVSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLL 538

Query: 539 YSTEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKA 598
           YS E +L+E+G+ I+E  ++   + ++ L   L D +    ++K+  ++  +  + +G  
Sbjct: 539 YSYESTLKENGELISEELKQRAEQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIGAE 598

Query: 599 IYEAQAKKDAAADTATADTTAKTDVKDD---VVDADYEEIKDDE 639
           +Y+    +       T+DT     +       +  ++    DDE
Sbjct: 599 VYQQGGSQTTDTVEPTSDTLITATMNSSNETTLIDEFNFDFDDE 642


>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
          Length = 668

 Score =  782 bits (2021), Expect = 0.0
 Identities = 337/648 (52%), Positives = 460/648 (70%), Gaps = 16/648 (2%)

Query: 1   MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60
           M +++GIDLGTTNS VA+M+G    VI NAEG RTTPS+VGFT +GE LVGQ A+RQ V 
Sbjct: 1   MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVL 60

Query: 61  NPSNTIFAAKRLIGRRFNDSTVAKDASL-VPFKIVEGKGGDAWIE--AQGKQYSPSQISA 117
           NP NT +  KR IGRR+++       S  VP+ I   + G+  I+     ++++P ++SA
Sbjct: 61  NPQNTFYNLKRFIGRRYDELD---PESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSA 117

Query: 118 IVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAAL 177
           ++L+K+ + A  +LGE V+ AVITVPAYFND+QRQAT+DAGRIAGL+V RI+NEPTAAAL
Sbjct: 118 MILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAAL 177

Query: 178 AYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICD 237
           AYGLD+  ++TV+VFD GGGTFDVSLLE+G+GVFEVKAT+GDT LGG DFD  +V+ + +
Sbjct: 178 AYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAE 237

Query: 238 TFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTR 297
            F ++ GIDL++D  ALQRL EAAEKAKIELS  S T+I+LPFI+A   G +H+  +L R
Sbjct: 238 QFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDR 297

Query: 298 AQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPS 357
            QFE L   L+ + + P K+ L+DAGLSP DIDEVVLVGG TRMP +QQ V+    + P+
Sbjct: 298 KQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPN 357

Query: 358 KGVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKK 417
           + VNPDEVVA+GAAIQAG+L G++KDLLLLDVTPLSLG+ET+GGV   +I RN+TIP ++
Sbjct: 358 QNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRR 417

Query: 418 SQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANG 477
           S VFST+ +NQS+V I + QGER+M +DNK LG+F L GIPPAP+G PQ++VAFDIDANG
Sbjct: 418 SDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANG 477

Query: 478 IVQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESL 537
           I+QVSA D+ TG+ Q ++IQ +  LS +++ +M+++AE  A+ D++RRE +E +N A +L
Sbjct: 478 ILQVSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTL 537

Query: 538 IYSTEQSLR----EHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSM 593
           I   E+ LR    E G   AE +++++  ++  ++  L   D  E  +  A   L E   
Sbjct: 538 IAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRE--LDLAVADLQEALY 595

Query: 594 NLGKAIYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKDDEKD 641
            L + +     ++D        +T     +KD++   DY +  DD  D
Sbjct: 596 GLNREVRAEYKEEDEGPLQGIKNTF--GSLKDELFSDDYWD--DDPWD 639


>gnl|CDD|178726 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
          Length = 673

 Score =  738 bits (1906), Expect = 0.0
 Identities = 344/638 (53%), Positives = 464/638 (72%), Gaps = 10/638 (1%)

Query: 3   KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNP 62
           KV+GIDLGTTNS VA M+G    ++ NAEG RTTPS+V +T  G+RLVGQ AKRQAV NP
Sbjct: 40  KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 99

Query: 63  SNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIE--AQGKQYSPSQISAIVL 120
            NT F+ KR IGR+ ++  V +++  V +++V  + G+  ++  A GKQ++  +ISA VL
Sbjct: 100 ENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVL 157

Query: 121 QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG 180
           +K+ + A  FL + V+KAVITVPAYFND+QR ATKDAGRIAGL+VLRIINEPTAA+LAYG
Sbjct: 158 RKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 217

Query: 181 LDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK 240
            +KK   T++VFD GGGTFDVS+LE+GDGVFEV +T+GDT LGG+DFD  +V+ +   FK
Sbjct: 218 FEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 277

Query: 241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF 300
           K+ GIDL +D  ALQRL EAAEKAKIELSS +QT I+LPFI+A + G +H++  LTRA+F
Sbjct: 278 KDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKF 337

Query: 301 ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGV 360
           E L + L+ +   P +  L+DA LS  DIDEV+LVGG TR+P +Q+ V+    K P+  V
Sbjct: 338 EELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTV 397

Query: 361 NPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQV 420
           NPDEVVA+GAA+QAGVL G+V D++LLDVTPLSLG+ETLGGV T II RN+T+PT KS+V
Sbjct: 398 NPDEVVALGAAVQAGVLAGEVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEV 457

Query: 421 FSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQ 480
           FSTAAD Q++V I + QGER+   DNK LG F L GIPPAP+G PQIEV FDIDANGI+ 
Sbjct: 458 FSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILS 517

Query: 481 VSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYS 540
           VSA DKGTGK Q I+I  +  L  +++E+MV++AE  A+ DK++R+AV+TKN A+S++Y 
Sbjct: 518 VSATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQ 577

Query: 541 TEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIY 600
           TE+ L+E GDK+    ++ +   +  L+  +  A     K+K+A   L +  M +G+++Y
Sbjct: 578 TEKQLKELGDKVPADVKEKVEAKLKELKDAI--ASGSTQKMKDAMAALNQEVMQIGQSLY 635

Query: 601 EAQAKKDA----AADTATADTTAKTDVKDDVVDADYEE 634
                  A      +  ++ +++     DDV+DAD+ +
Sbjct: 636 NQPGAGGAGPAPGGEAGSSSSSSSGGDGDDVIDADFTD 673


>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
           Provisional.
          Length = 657

 Score =  729 bits (1884), Expect = 0.0
 Identities = 359/615 (58%), Positives = 472/615 (76%), Gaps = 3/615 (0%)

Query: 4   VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPS 63
           VIG+DLGTT SCVA MDG   RV+EN+EG RTTPS+V F    E+LVG  AKRQA+TNP 
Sbjct: 29  VIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGS-EKLVGLAAKRQAITNPQ 87

Query: 64  NTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIE-AQGKQYSPSQISAIVLQK 122
           +T +A KRLIGRRF D  + KD   VP+KIV    GDAW++   GKQYSPSQI A VL+K
Sbjct: 88  STFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEK 147

Query: 123 MKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLD 182
           MKETAE+FLG  VS AV+T PAYFNDAQRQATKDAG IAGL+V+R++NEPTAAALAYG+D
Sbjct: 148 MKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMD 207

Query: 183 KKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKE 242
           K     + V+D GGGTFD+S+LE+  GVFEVKATNGDT LGGEDFD  L ++I + F+K 
Sbjct: 208 KTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKT 267

Query: 243 NGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFER 302
           +GIDL ++ +ALQR++EAAEKAK ELSS  +TE+NLPFI+AN+ GAQH+ M ++R++FE 
Sbjct: 268 SGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEG 327

Query: 303 LVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNP 362
           +   LI++++ PCK+C++DAG+   +I++VVLVGGMTRMPK+ + V+ FF K P +GVNP
Sbjct: 328 ITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNP 387

Query: 363 DEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVFS 422
           DE VA+GAA   GVL+GDVK L+LLDVTPLSLGIETLGGVFT +I +N+TIPTKKSQ FS
Sbjct: 388 DEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFS 447

Query: 423 TAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQVS 482
           TAADNQ+ V I++ QGER+M ADN+++GQFDLVGIPPAP+G PQIEV FDIDANGI  V+
Sbjct: 448 TAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVT 507

Query: 483 ALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTE 542
           A DK TGK Q I+I A+GGLS E IE+M++D+E +AE D+ +RE VE +N+AE+ + + E
Sbjct: 508 AKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAE 567

Query: 543 QSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEA 602
           + L E    +++AE+++++  +  LR  + + +  +  +  AT KL +  M  G+  Y+ 
Sbjct: 568 RQLGEW-KYVSDAEKENVKTLVAELRKAMENPNVAKDDLAAATDKLQKAVMECGRTEYQQ 626

Query: 603 QAKKDAAADTATADT 617
            A  ++ + + + + 
Sbjct: 627 AAAANSGSSSNSGEQ 641


>gnl|CDD|185395 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
          Length = 653

 Score =  673 bits (1738), Expect = 0.0
 Identities = 323/622 (51%), Positives = 417/622 (67%), Gaps = 21/622 (3%)

Query: 5   IGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSN 64
           IGIDLGTT SCV +   +NV +I N +G RTTPS V FTD  ERL+G  AK Q   NP N
Sbjct: 7   IGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPEN 65

Query: 65  TIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQ----GKQYSPSQISAIVL 120
           T+F AKRLIGR+F+DS V  D    PFK+  G      IE       K + P +IS++VL
Sbjct: 66  TVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVL 125

Query: 121 QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG 180
           QKMKE AE++LG+ V  AV+TVPAYFND+QRQATKDAG IAGL+VLRIINEPTAAA+AYG
Sbjct: 126 QKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 185

Query: 181 LDKKDA--RTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT 238
           LDKK    + V++FD GGGTFDVSLL + DG+FEVKAT GDT LGGEDFD+ LVE     
Sbjct: 186 LDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQD 245

Query: 239 FKKEN-GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTR 297
           FK++N G DL  +  AL+RL+   E+AK  LSS++Q  I +  +          N+ ++R
Sbjct: 246 FKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDY----NVTISR 301

Query: 298 AQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN-KSP 356
           A+FE L     + T++P +K L+DAG+    + EVVLVGG TR+PK+Q  ++DFFN K P
Sbjct: 302 ARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEP 361

Query: 357 SKGVNPDEVVAMGAAIQAGVLQGD----VKDLLLLDVTPLSLGIETLGGVFTSIIDRNST 412
            K +NPDE VA GAA+QA +L G+    V+DLLLLDVTPLSLG+ET GGV T +I+RN+T
Sbjct: 362 CKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTT 421

Query: 413 IPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFD 472
           IPTKKSQ+F+T ADNQ  V I++ +GER M  DN LLG+F L GIPPAP+G PQIEV FD
Sbjct: 422 IPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFD 481

Query: 473 IDANGIVQVSALDKGTGKAQQISIQASGG-LSSEDIEKMVKDAEMNAEMDKKRREAVETK 531
           IDANGI+ VSA DK TGK+ +I+I    G LS  DI++MV +AE     D+  RE VE K
Sbjct: 482 IDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAK 541

Query: 532 NHAESLIYSTEQSLREH--GDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLM 589
           N  E+  YS + +L++     K++++++ +I ++ID     L      E +  E  QK +
Sbjct: 542 NGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEV 601

Query: 590 EVSMN-LGKAIYEAQAKKDAAA 610
           E   N +   +Y+A        
Sbjct: 602 ESVCNPIMTKMYQAAGGGMPGG 623


>gnl|CDD|162645 TIGR01991, HscA, Fe-S protein assembly chaperone HscA.  The Heat
           Shock Cognate proteins HscA and HscB act together as
           chaperones. HscA resembles DnaK but belongs in a
           separate clade. The apparent function is to aid assembly
           of iron-sulfur cluster proteins. Homologs from Buchnera
           and Wolbachia are clearly in the same clade but are
           highly derived and score lower than some examples of
           DnaK.
          Length = 599

 Score =  598 bits (1545), Expect = e-171
 Identities = 264/593 (44%), Positives = 373/593 (62%), Gaps = 17/593 (2%)

Query: 4   VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPS 63
            +GIDLGTTNS VA +      V+ +AEG    PS+V +  +G   VG+ A   A  +P 
Sbjct: 1   AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPK 60

Query: 64  NTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKM 123
           NTI + KRL+GR   D    K  S++P++ V+G G    +       +P ++SA +L+K+
Sbjct: 61  NTISSVKRLMGRSIED---IKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKL 117

Query: 124 KETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDK 183
           K+ AE  LG  +  AVITVPAYF+DAQRQATKDA R+AGL+VLR++NEPTAAA+AYGLDK
Sbjct: 118 KQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDK 177

Query: 184 KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKEN 243
                  V+D GGGTFDVS+L++  GVFEV AT GD+ LGG+DFD  L + I     K+ 
Sbjct: 178 ASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWIL----KQL 233

Query: 244 GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERL 303
           GI    +    + L +AA  AK  L+     E++      +  G      KLTR +FE L
Sbjct: 234 GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTLDGKDFKG------KLTRDEFEAL 287

Query: 304 VNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPD 363
           +  L+QKT+  C++ L+DAGLS  +I  VVLVGG TRMP ++++V + F + P   ++PD
Sbjct: 288 IQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPD 347

Query: 364 EVVAMGAAIQAGVLQGDV--KDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVF 421
           +VVA+GAAIQA +L G+    DLLLLDVTPLSLGIET+GG+   II RN+ IP  ++Q F
Sbjct: 348 QVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEF 407

Query: 422 STAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQV 481
           +T  D Q+A+ I + QGER++  D + L +F+L GIPP   G  +I V F +DA+G++ V
Sbjct: 408 TTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTV 467

Query: 482 SALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYST 541
           SA ++ TG  Q I ++ S GLS E+IE+M+KD+  +AE D   R   E K  AE ++ + 
Sbjct: 468 SAQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEAL 527

Query: 542 EQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMN 594
           + +L   GD ++E E+ +I  +++AL+  L   D D   IK A + L E + N
Sbjct: 528 QAALAADGDLLSEDERAAIDAAMEALQKALQGDDAD--AIKAAIEALEEATDN 578


>gnl|CDD|179957 PRK05183, hscA, chaperone protein HscA; Provisional.
          Length = 616

 Score =  597 bits (1541), Expect = e-171
 Identities = 245/591 (41%), Positives = 375/591 (63%), Gaps = 23/591 (3%)

Query: 5   IGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSN 64
           +GIDLGTTNS VA +      V+ + +G    PS+V + ++G   VG  A+  A  +P N
Sbjct: 22  VGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDG-IEVGYEARANAAQDPKN 80

Query: 65  TIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIE-AQGKQYSPSQISAIVLQKM 123
           TI + KR +GR   D  + +    +P++ V  + G   I  AQG + SP ++SA +L+ +
Sbjct: 81  TISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQGLK-SPVEVSAEILKAL 137

Query: 124 KETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDK 183
           ++ AE  LG  +  AVITVPAYF+DAQRQATKDA R+AGL+VLR++NEPTAAA+AYGLD 
Sbjct: 138 RQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDS 197

Query: 184 KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKEN 243
                + V+D GGGTFD+S+L +  GVFEV AT GD+ LGG+DFD  L + I     ++ 
Sbjct: 198 GQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWI----LEQA 253

Query: 244 GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERL 303
           G+  + D    + L +AA  AK  LS     E+++    A   G      ++TR QF  L
Sbjct: 254 GLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSV----ALWQG------EITREQFNAL 303

Query: 304 VNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPD 363
           +  L+++T+  C++ L+DAG+   ++ EVV+VGG TR+P ++++V +FF ++P   ++PD
Sbjct: 304 IAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPD 363

Query: 364 EVVAMGAAIQAGVLQGDV--KDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVF 421
           +VVA+GAAIQA +L G+    D+LLLDV PLSLG+ET+GG+   II RN+TIP  ++Q F
Sbjct: 364 KVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEF 423

Query: 422 STAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQV 481
           +T  D Q+A++I + QGER++ AD + L +F+L GIPP   G  +I V F +DA+G++ V
Sbjct: 424 TTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSV 483

Query: 482 SALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYST 541
           +A++K TG    I ++ S GL+ ++I +M+KD+  +AE D + R   E K  AE ++ + 
Sbjct: 484 TAMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEAL 543

Query: 542 EQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVS 592
           + +L   GD ++ AE+ +I  ++ ALR +    D D   I+ A + L + +
Sbjct: 544 QAALAADGDLLSAAERAAIDAAMAALREVAQGDDAD--AIEAAIKALDKAT 592


>gnl|CDD|167230 PRK01433, hscA, chaperone protein HscA; Provisional.
          Length = 595

 Score =  374 bits (961), Expect = e-104
 Identities = 207/608 (34%), Positives = 328/608 (53%), Gaps = 49/608 (8%)

Query: 4   VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPS 63
            +GID GTTNS +AI   + V+VI++ +     P+ + FT                   +
Sbjct: 21  AVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNN-----------FTIGNN 69

Query: 64  NTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKM 123
             + + KRL G+   +         +    ++    +  +    KQ    +I+A +   +
Sbjct: 70  KGLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIFIYL 129

Query: 124 KETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDK 183
           K  AE  L   ++KAVITVPA+FNDA R     A +IAG +VLR+I EPTAAA AYGL+K
Sbjct: 130 KNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNK 189

Query: 184 KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKEN 243
                 +V+D GGGTFDVS+L + +G+F+V ATNGD  LGG D D  + +++C+ F    
Sbjct: 190 NQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKF---- 245

Query: 244 GIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERL 303
             DL      LQ  K+A E      + T +   N            + N+ + +   E+L
Sbjct: 246 --DLPNSIDTLQLAKKAKE------TLTYKDSFN------------NDNISINKQTLEQL 285

Query: 304 VNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPD 363
           +  L+++T+   ++CL+ AG +P +ID V+LVGG TR+P I+  +   F       ++PD
Sbjct: 286 ILPLVERTINIAQECLEQAG-NP-NIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPD 343

Query: 364 EVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVFST 423
           + V  GAA+QA  L     + LL+DV PLSLG+E  GG+   II RN+ IP    + F+T
Sbjct: 344 KAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTT 403

Query: 424 AADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQVSA 483
            ADNQ+ +   I QGER+M AD + L +F+L G+PP   G+ + EV F IDA+GI+ VSA
Sbjct: 404 YADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSA 463

Query: 484 LDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQ 543
            +K +  +  I ++ + G+   +I+ M+++A  NA++D   R   E    AE+LI++ E+
Sbjct: 464 YEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIER 523

Query: 544 SLREHGDKIAEAEQKSIRESIDAL--------RTLLNDADPD-ESKIKEATQKLMEVSMN 594
           ++ E    ++E+E   I   +D +          L+N++  + +SKIK++    + + +N
Sbjct: 524 AIAELTTLLSESEISIINSLLDNIKEAVHARDIILINNSIKEFKSKIKKSMDTKLNIIIN 583

Query: 595 L---GKAI 599
               GK I
Sbjct: 584 DLLKGKNI 591


>gnl|CDD|183274 PRK11678, PRK11678, putative chaperone; Provisional.
          Length = 450

 Score = 83.8 bits (208), Expect = 1e-16
 Identities = 75/312 (24%), Positives = 123/312 (39%), Gaps = 85/312 (27%)

Query: 112 PSQISA---IV---LQKMKETAESFLGETVSKAVITVPAYFN-----DAQRQA----TKD 156
           P Q++    +V   +  +K+ AE+ L   +++AVI  P  F      +A RQA     + 
Sbjct: 120 PQQVALFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERA 179

Query: 157 AGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKAT 216
           A R AG   +    EP AA L +     + + V+V D GGGT D S+L MG   +  +A 
Sbjct: 180 AKR-AGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPS-WRGRAD 237

Query: 217 NGDTFL-------GGEDFDSCL-VEHICDTF----KKENGIDL----------------- 247
              + L       GG D D  L  + +        + E GI L                 
Sbjct: 238 RSASLLGHSGQRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQ 297

Query: 248 ------------------KQDTLALQRLKE------------AAEKAKIELSSTSQTEIN 277
                              ++   + RL +            +AE+AKI LS  ++T  +
Sbjct: 298 SDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRAS 357

Query: 278 LPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGG 337
           L FIS        L  ++++   E  ++  + + +E  +  L  A + P   D + L GG
Sbjct: 358 LDFISD------GLATEISQQGLEEAISQPLARILELVQLALDQAQVKP---DVIYLTGG 408

Query: 338 MTRMPKIQQSVQ 349
             R P I+ ++ 
Sbjct: 409 SARSPLIRAALA 420



 Score = 31.4 bits (72), Expect = 0.75
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 5  IGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMV 40
          IG D GT N  VA+M     R++     +   PS +
Sbjct: 3  IGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTL 38


>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein.  This family consists of
           bacterial MreB and Mbl proteins as well as two related
           archaeal sequences. MreB is known to be a rod
           shape-determining protein in bacteria and goes to make
           up the bacterial cytoskeleton. Genes coding for MreB/Mbl
           are only found in elongated bacteria, not in coccoid
           forms. It has been speculated that constituents of the
           eukaryotic cytoskeleton (tubulin, actin) may have
           evolved from prokaryotic precursor proteins closely
           related to today's bacterial proteins FtsZ and MreB/Mbl.
          Length = 327

 Score = 63.0 bits (154), Expect = 3e-10
 Identities = 71/299 (23%), Positives = 121/299 (40%), Gaps = 103/299 (34%)

Query: 2   SKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTN 61
           SK IGIDLGT N+ +  + GK + + E        PS+V                 A+  
Sbjct: 1   SKDIGIDLGTANT-LVYVKGKGIVLNE--------PSVV-----------------AINT 34

Query: 62  PSNTIFA----AKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISA 117
            +  + A    AK+++GR                                   +P  I A
Sbjct: 35  KTKKVLAVGNEAKKMLGR-----------------------------------TPGNIVA 59

Query: 118 IVLQKMK-------ETAESFLGETVSKA-----------VITVPAYFNDAQRQATKDAGR 159
           +  + +K       E  E+ L   + K            VI VP+   + +R+A K+A +
Sbjct: 60  V--RPLKDGVIADFEVTEAMLKYFIKKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAK 117

Query: 160 IAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGD 219
            AG   + +I EP AAA+  GL  ++    +V D GGGT +V+++ +G  V     T+  
Sbjct: 118 NAGAREVFLIEEPMAAAIGAGLPVEEPTGNMVVDIGGGTTEVAVISLGGIV-----TSKS 172

Query: 220 TFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINL 278
             + G++ D  ++++I    +K+  + + + T         AE+ KIE+ S   TE   
Sbjct: 173 VRVAGDEMDEAIIKYI----RKKYNLLIGERT---------AERIKIEIGSAYPTEEEE 218


>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
           A close homolog is found in the Archaeon
           Methanobacterium thermoautotrophicum, and a more distant
           homolog in Archaeoglobus fulgidus. The family is related
           to cell division protein FtsA and heat shock protein
           DnaK.
          Length = 333

 Score = 62.4 bits (152), Expect = 4e-10
 Identities = 68/270 (25%), Positives = 121/270 (44%), Gaps = 63/270 (23%)

Query: 5   IGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSN 64
           IGIDLGT N+ V +  G+ + + E        PS+V             A R      + 
Sbjct: 5   IGIDLGTANTLVYV-KGRGIVLNE--------PSVV-------------AIRTDRDAKTK 42

Query: 65  TIFA----AKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVL 120
           +I A    AK ++G+     T     ++ P K  +G   D  +  +  +Y   Q+     
Sbjct: 43  SILAVGHEAKEMLGK-----TPGNIVAIRPMK--DGVIADFEVTEKMIKYFIKQVH---- 91

Query: 121 QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG 180
                + +SF    +   VI VP+     +R+A K++   AG   + +I EP AAA+  G
Sbjct: 92  -----SRKSFFKPRI---VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAG 143

Query: 181 LDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK 240
           L  ++    +V D GGGT +V+++ +G G+   ++      +GG++FD  ++ +I    +
Sbjct: 144 LPVEEPTGSMVVDIGGGTTEVAVISLG-GIVVSRSIR----VGGDEFDEAIINYI----R 194

Query: 241 KENGIDLKQDTLALQRLKEAAEKAKIELSS 270
           +   + + + T         AE+ KIE+ S
Sbjct: 195 RTYNLLIGEQT---------AERIKIEIGS 215


>gnl|CDD|184404 PRK13930, PRK13930, rod shape-determining protein MreB;
           Provisional.
          Length = 335

 Score = 59.8 bits (146), Expect = 2e-09
 Identities = 69/297 (23%), Positives = 117/297 (39%), Gaps = 103/297 (34%)

Query: 1   MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60
            SK IGIDLGT N+ V +  GK + + E        PS+V                 A+ 
Sbjct: 7   FSKDIGIDLGTANTLVYV-KGKGIVLNE--------PSVV-----------------AID 40

Query: 61  NPSNTIFA----AKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQIS 116
             +  + A    AK ++GR                                   +P  I 
Sbjct: 41  TKTGKVLAVGEEAKEMLGR-----------------------------------TPGNIE 65

Query: 117 AIVLQKMK-------ETAESFLGETVSKA-----------VITVPAYFNDAQRQATKDAG 158
           AI  + +K       E  E+ L   + KA           VI VP+   + +R+A ++A 
Sbjct: 66  AI--RPLKDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAA 123

Query: 159 RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNG 218
             AG   + +I EP AAA+  GL   +    +V D GGGT +V+++ +G  V      + 
Sbjct: 124 EHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIV-----YSE 178

Query: 219 DTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTE 275
              + G++ D  +V+++    +++  + + + T         AE+ KIE+ S    +
Sbjct: 179 SIRVAGDEMDEAIVQYV----RRKYNLLIGERT---------AEEIKIEIGSAYPLD 222


>gnl|CDD|184402 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.
          Length = 336

 Score = 58.0 bits (141), Expect = 7e-09
 Identities = 60/257 (23%), Positives = 99/257 (38%), Gaps = 90/257 (35%)

Query: 1   MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60
             + IGIDLGT N  V  + GK + + E        PS+V                 A+ 
Sbjct: 2   FGRDIGIDLGTANVLV-YVKGKGIVLNE--------PSVV-----------------AID 35

Query: 61  NPSNTIFA----AKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQIS 116
             +N + A    A+R++GR                                   +P  I 
Sbjct: 36  KNTNKVLAVGEEARRMVGR-----------------------------------TPGNIV 60

Query: 117 AIVLQKMK-------ETAESFLGETVSKA-----------VITVPAYFNDAQRQATKDAG 158
           AI  + ++       +  E  L   ++KA           +I +P      +++A ++A 
Sbjct: 61  AI--RPLRDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118

Query: 159 RIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNG 218
             AG   + +I EP AAA+  GLD       +V D GGGT D+++L +G  V     T+ 
Sbjct: 119 EQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIV-----TSS 173

Query: 219 DTFLGGEDFDSCLVEHI 235
              + G+ FD  ++ +I
Sbjct: 174 SIKVAGDKFDEAIIRYI 190


>gnl|CDD|131581 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
           protein. 
          Length = 239

 Score = 54.8 bits (132), Expect = 7e-08
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALA 178
           +++++K+T E  LG  ++ A   +P    +   +   +    AG++VL +++EPTAA  A
Sbjct: 45  IVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA--A 102

Query: 179 YGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFL 222
             L  K+     V D GGGT  +S+L+ G  ++      G T +
Sbjct: 103 AVLQIKNG---AVVDVGGGTTGISILKKGKVIYSADEPTGGTHM 143


>gnl|CDD|184401 PRK13927, PRK13927, rod shape-determining protein MreB;
           Provisional.
          Length = 334

 Score = 51.6 bits (125), Expect = 7e-07
 Identities = 66/291 (22%), Positives = 113/291 (38%), Gaps = 102/291 (35%)

Query: 1   MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60
            S  +GIDLGT N+ V  + GK + + E        PS+V                 A+ 
Sbjct: 4   FSNDLGIDLGTANTLV-YVKGKGIVLNE--------PSVV-----------------AIR 37

Query: 61  NPSNTIFA----AKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQIS 116
             +  + A    AK+++GR                                   +P  I 
Sbjct: 38  TDTKKVLAVGEEAKQMLGR-----------------------------------TPGNIV 62

Query: 117 AIVLQKMK-------ETAESFLGETVSKA----------VITVPAYFNDAQRQATKDAGR 159
           AI  + MK       +  E  L   + K           VI VP+   + +R+A +++  
Sbjct: 63  AI--RPMKDGVIADFDVTEKMLKYFIKKVHKNFRPSPRVVICVPSGITEVERRAVRESAL 120

Query: 160 IAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGD 219
            AG   + +I EP AAA+  GL   +    +V D GGGT +V+++ +G  V      +  
Sbjct: 121 GAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIV-----YSKS 175

Query: 220 TFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSS 270
             +GG+ FD  ++ ++    ++   + + + T         AE+ KIE+ S
Sbjct: 176 VRVGGDKFDEAIINYV----RRNYNLLIGERT---------AERIKIEIGS 213


>gnl|CDD|185038 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
           Provisional.
          Length = 267

 Score = 50.6 bits (122), Expect = 1e-06
 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 5/93 (5%)

Query: 119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALA 178
           +++++K T E  LG  ++ A   +P   ++   +A  +    AGL+V  +++EPTAAA  
Sbjct: 72  IVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAV 131

Query: 179 YGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVF 211
            G+   +     V D GGGT  +S+L+ G  V+
Sbjct: 132 LGI--DNG---AVVDIGGGTTGISILKDGKVVY 159


>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
           Provisional.
          Length = 335

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 48/233 (20%)

Query: 5   IGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPSN 64
           IGIDLGT N  V     KN  +I N       PS+V    E + ++    +         
Sbjct: 7   IGIDLGTANILVY---SKNKGIILNE------PSVVAVDTETKAVLAIGTE--------- 48

Query: 65  TIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMK 124
               AK +IG+     T  K  ++ P K       D  I       +   ++  +L+++ 
Sbjct: 49  ----AKNMIGK-----TPGKIVAVRPMK-------DGVI-------ADYDMTTDLLKQIM 85

Query: 125 ETAESFLGETVSK--AVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLD 182
           + A   +G T  K   V+  P+     +R+A  DA +  G   + +I EP AAA+   L 
Sbjct: 86  KKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLP 145

Query: 183 KKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHI 235
             +    +V D GGGT +V+++  G GV    +      +GG+  D  +V  +
Sbjct: 146 VDEPVANVVVDIGGGTTEVAIISFG-GVVSCHSIR----IGGDQLDEDIVSFV 193


>gnl|CDD|162297 TIGR01312, XylB, D-xylulose kinase.  D-xylulose kinase (XylB)
           generally is found with xylose isomerase (XylA) and acts
           in xylose utilization.
          Length = 481

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 277 NLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVG 336
             P    +  G   L    TRA   R V   +   +      L++AG  P  I  + L+G
Sbjct: 344 LDPQARGSFIG---LTHNTTRADLTRAVLEGVTFALRDSLDILREAGGIP--IQSIRLIG 398

Query: 337 GMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQG 379
           G  + P  +Q + D F  +P      +E  A+GAAI A    G
Sbjct: 399 GGAKSPAWRQMLADIFG-TPVDVPEGEEGPALGAAILAAWALG 440


>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
          Length = 2084

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 8/141 (5%)

Query: 507  IEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESIDA 566
             ++  K AE   + D+ +++A E K  A++     E++      K AEA +     + D 
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEA-----KKAAEAAKAEAEAAADE 1358

Query: 567  LRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDV--- 623
                   A+  E K +EA +K         +     +AKK A  D   AD   K      
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418

Query: 624  KDDVVDADYEEIKDDEKDKKK 644
            K D      EE K  ++ KKK
Sbjct: 1419 KADEAKKKAEEKKKADEAKKK 1439


>gnl|CDD|183545 PRK12472, PRK12472, hypothetical protein; Provisional.
          Length = 508

 Score = 37.2 bits (86), Expect = 0.015
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 13/147 (8%)

Query: 508 EKMVKDAEMNAEM-DKKRREAVETKNHAESLIYSTEQSLR--EHGDKIAEAEQKSIRESI 564
           E + ++AE  A   D+ +  A      A  L    + SLR  E     A+AE K   +++
Sbjct: 193 ETLAREAEDAARAADEAKTAAAAAAREAAPL----KASLRKLERAKARADAELKRADKAL 248

Query: 565 DALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDVK 624
            A +T    A  +E + K A Q+  E +  L  A  +A+AK+ AAA        A    K
Sbjct: 249 AAAKTDEAKARAEERQQK-AAQQAAEAATQLDTAKADAEAKRAAAA-ATKEAAKAAAAKK 306

Query: 625 DDVVDADYEEIKDDEKDKKKLSIFLSR 651
            +   A      D +   + +SI++SR
Sbjct: 307 AETAKA----ATDAKLALEPVSIYISR 329


>gnl|CDD|182579 PRK10598, PRK10598, lipoprotein; Provisional.
          Length = 186

 Score = 33.9 bits (78), Expect = 0.13
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 18/106 (16%)

Query: 261 AEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLT-RAQ--FERLVNHLIQKTVEPCKK 317
            E  K+ L+  +  +I+  F      G+Q  +MKLT +AQ  F++    +  K +E    
Sbjct: 68  EEPNKVTLTGDANLDISSLF------GSQKADMKLTLKAQPVFDKEKGAIYLKDME---- 117

Query: 318 CLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPD 363
            L D  + P  +  V+     T +P + QS++ +FN+ P+  +  D
Sbjct: 118 -LVDYTVQPEKMQTVM----QTLLPYLNQSLRSYFNQQPAYVLRED 158


>gnl|CDD|130301 TIGR01234, L-ribulokinase, L-ribulokinase.  This enzyme catalyzes
           the second step in arabinose catabolism. The most
           closely related protein subfamily outside the scope of
           this model includes ribitol kinase from E. coli.
          Length = 536

 Score = 33.7 bits (77), Expect = 0.13
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 317 KCLQDAGLSPSDIDEVVLVGGMTRM-PKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAG 375
           +   D+G+    ++E++  GG+ R  P I Q   D  N+ P + V  D+  A+GAAI A 
Sbjct: 427 ETFTDSGVP---VEELMAAGGIARKNPVIMQIYADVTNR-PLQIVASDQAPALGAAIFAA 482

Query: 376 VLQGDVKDL 384
           V  G   D+
Sbjct: 483 VAAGVYADI 491


>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
          Length = 880

 Score = 31.5 bits (72), Expect = 0.74
 Identities = 31/170 (18%), Positives = 72/170 (42%), Gaps = 42/170 (24%)

Query: 514 AEMNAEMDK---KRREAVETKNHAESLIYSTEQSL----------REHGDKIAEAEQK-- 558
           AE++ E+++   +R +A ET++ A+ ++   E+             +  + IAE E++  
Sbjct: 216 AELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETERERE 275

Query: 559 ----SIRESIDALRTL------------LNDADPD---------ESKIKEATQKLMEVSM 593
                +R+  + L  L            L+DAD +         E + +E   +L E  +
Sbjct: 276 ELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRV 335

Query: 594 NLGKAIYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKDDEKDKK 643
                  EA++ ++ A D        + +  +   +++ EE ++  +D++
Sbjct: 336 AAQAHNEEAESLREDADDLEERAEELREEAAEL--ESELEEAREAVEDRR 383


>gnl|CDD|180722 PRK06840, PRK06840, hypothetical protein; Validated.
          Length = 339

 Score = 30.7 bits (70), Expect = 1.2
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 312 VEPCKKCLQDAGLSPSDIDEVVLVGG-------MTRMPKIQQSV 348
           +   K  L+ AG+ P+ ID V+ +G         +  PKIQ  +
Sbjct: 58  IAAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEI 101


>gnl|CDD|183692 PRK12704, PRK12704, phosphodiesterase; Provisional.
          Length = 520

 Score = 30.9 bits (71), Expect = 1.2
 Identities = 21/103 (20%), Positives = 51/103 (49%), Gaps = 2/103 (1%)

Query: 505 EDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESI 564
           E+ ++++++A+  AE  KK    +E K     L    E+ LRE  +++ + E++ +++  
Sbjct: 38  EEAKRILEEAKKEAEAIKKEAL-LEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKE- 95

Query: 565 DALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKD 607
           + L   L   +  E ++++  ++L +    L K   E +   +
Sbjct: 96  ENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138


>gnl|CDD|183700 PRK12721, PRK12721, secretion system apparatus protein SsaU;
           Reviewed.
          Length = 349

 Score = 30.4 bits (69), Expect = 1.6
 Identities = 10/26 (38%), Positives = 19/26 (73%)

Query: 502 LSSEDIEKMVKDAEMNAEMDKKRREA 527
           +S +D+++  KD+E + E+ +KRRE 
Sbjct: 215 MSKDDVKQEYKDSEGDPEIKQKRREL 240


>gnl|CDD|179223 PRK01109, PRK01109, ATP-dependent DNA ligase; Provisional.
          Length = 590

 Score = 29.9 bits (68), Expect = 2.1
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 501 GLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSL--REHGD---KIAEA 555
           G+S +++E + K      ++ +  R     K     L + +++ L  +E  D   KIA A
Sbjct: 74  GISEKEVENLYKKT---GDLGEVARRLKSKKKQKSLLAFFSKEPLTVKEVYDTLVKIALA 130

Query: 556 E-QKSIRESIDALRTLLNDADPDESK 580
             + S    I  L  LL DA P E+K
Sbjct: 131 TGEGSQDLKIKLLAGLLKDASPLEAK 156


>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
           P-type ATPase.  The calcium P-type ATPases have been
           characterized as Type IIA based on a phylogenetic
           analysis which distinguishes this group from the Type
           IIB PMCA calcium pump modelled by TIGR01517. A separate
           analysis divides Type IIA into sub-types, SERCA and PMR1
           the former of which is modelled by TIGR01116.
          Length = 884

 Score = 29.8 bits (67), Expect = 2.6
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 547 EHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKK 606
             G+K+   + + + + +  +      +   + KI +A QK  +V    G  + +A A K
Sbjct: 575 VSGEKLDAMDDQQLSQIVPKVAVFARASPEHKMKIVKALQKRGDVVAMTGDGVNDAPALK 634

Query: 607 DAAADTATADTTAKTDVKDDVVD 629
              AD   A     TDV  +  D
Sbjct: 635 --LADIGVAMGQTGTDVAKEAAD 655


>gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase; Provisional.
          Length = 809

 Score = 29.8 bits (67), Expect = 2.6
 Identities = 16/67 (23%), Positives = 31/67 (46%)

Query: 463 GTPQIEVAFDIDANGIVQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDK 522
           G+ +IEV+   D +    ++   +  G    I  Q   GLS +   ++V D +++ E  +
Sbjct: 657 GSREIEVSCLGDGSSAYVIAGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQE 716

Query: 523 KRREAVE 529
           +  E  E
Sbjct: 717 QVLELAE 723


>gnl|CDD|163397 TIGR03685, L21P_arch, 50S ribosomal protein L12P.  This model
           represents the L12P protein of the large (50S) subunit
           of the archaeal ribosome.
          Length = 105

 Score = 29.6 bits (67), Expect = 2.8
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 6/91 (6%)

Query: 558 KSIRESIDALRTLLNDA--DPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATA 615
           K I E  + L+ +L  A  + DE+++K     L  V  N+ +AI +A A   AAA  A A
Sbjct: 15  KEINE--ENLKAVLEAAGVEVDEARVKALVAALEGV--NIEEAIKKAAAAPVAAAAAAAA 70

Query: 616 DTTAKTDVKDDVVDADYEEIKDDEKDKKKLS 646
              A  + +++  + + E+ + +E+    L 
Sbjct: 71  AAAAAEEEEEEEEEEEEEKEESEEEAMAGLG 101


>gnl|CDD|183971 PRK13317, PRK13317, pantothenate kinase; Provisional.
          Length = 277

 Score = 29.2 bits (66), Expect = 3.9
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 1  MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGT 33
          M   IGID G T + +  ++ K  R  +     
Sbjct: 1  MEMKIGIDAGGTLTKIVYLEEKKQRTFKTEYSA 33


>gnl|CDD|162020 TIGR00747, fabH, 3-oxoacyl-(acyl-carrier-protein) synthase III.
           Active site residues include Cys112, His244 and Asn274
           of E. coli FabH. Cys-112 is the site of acyl group
           attachment.
          Length = 318

 Score = 28.9 bits (65), Expect = 4.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 312 VEPCKKCLQDAGLSPSDIDEVV 333
            E  K+ +++AG+S  DID ++
Sbjct: 56  FEAAKRAIENAGISKDDIDLII 77


>gnl|CDD|161848 TIGR00381, cdhD, CO dehydrogenase/acetyl-CoA synthase, delta
           subunit.  This is the small subunit of a heterodimer
           which catalyzes the reaction CO + H2O + Acceptor = CO2 +
           Reduced acceptor and is involved in the synthesis of
           acetyl-CoA from CO2 and H2.
          Length = 389

 Score = 28.8 bits (64), Expect = 4.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 161 AGLDVLRIINEPTAAALAYGLD 182
            GL    I+ +PT  AL YG++
Sbjct: 264 RGLMPRDIVMDPTTCALGYGIE 285


>gnl|CDD|180554 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
          Length = 106

 Score = 28.8 bits (65), Expect = 4.7
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 12/89 (13%)

Query: 558 KSIRESIDALRTLLNDA--DPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATA 615
           K I E  D L+ +L  A  + DE+++K     L +V  N+ +AI +A A   AAA  A A
Sbjct: 15  KEINE--DNLKKVLEAAGVEVDEARVKALVAALEDV--NIEEAIKKAAAAPVAAAAAAAA 70

Query: 616 DTTAKTDVKDDVVDADYEEIKDDEKDKKK 644
              A         +   EE +++E+ ++ 
Sbjct: 71  AAAAA------AAEEKKEEEEEEEEKEES 93


>gnl|CDD|152572 pfam12137, RapA_C, RNA polymerase recycling family C-terminal.
           This domain is found in bacteria. This domain is about
           360 amino acids in length. This domain is found
           associated with pfam00271, pfam00176. The function of
           this domain is not known, but structurally it forms an
           alpha-beta fold in nature with a central beta-sheet
           flanked by helices and loops, the beta-sheet being
           mainly antiparallel and flanked by four alpha helices,
           among which the two longer helices exhibit a coiled-coil
           arrangement.
          Length = 362

 Score = 28.7 bits (65), Expect = 4.9
 Identities = 21/101 (20%), Positives = 49/101 (48%), Gaps = 17/101 (16%)

Query: 480 QVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAE--MDKKRREAVETKNHAESL 537
           Q+S +++ T  A+++ ++A        IE++++ AE  AE  +++   +A +        
Sbjct: 260 QLSPVNRHT--ARKL-VKAL----RPQIEQLLQKAEKLAEEQLEEIIEQAKQQMQQQ--- 309

Query: 538 IYSTE----QSLREHGDKIAEAEQKSIRESIDALRTLLNDA 574
             S E    ++L+     I + E +++ +  + L T L+ A
Sbjct: 310 -LSAELARLKALKAVNPNIRDEEIEALEQQREELLTALDKA 349


>gnl|CDD|183809 PRK12879, PRK12879, 3-oxoacyl-(acyl carrier protein) synthase III;
           Reviewed.
          Length = 325

 Score = 28.7 bits (65), Expect = 5.3
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 297 RAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVV 333
           R  F+  V  +     +  ++ L+ AGL+  DID V+
Sbjct: 217 REVFKWAVRTM----PKGARQVLEKAGLTKDDIDWVI 249


>gnl|CDD|181315 PRK08242, PRK08242, acetyl-CoA acetyltransferase; Validated.
          Length = 402

 Score = 28.3 bits (64), Expect = 5.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 315 CKKCLQDAGLSPSDID 330
            +K L  AGL+  DID
Sbjct: 306 TRKALAKAGLTVDDID 321


>gnl|CDD|181792 PRK09352, PRK09352, 3-oxoacyl-(acyl carrier protein) synthase III;
           Reviewed.
          Length = 319

 Score = 28.5 bits (65), Expect = 5.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 316 KKCLQDAGLSPSDIDEVVL 334
           KK L+ AG+ P DID +++
Sbjct: 61  KKALEAAGIDPEDIDLIIV 79


>gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
           primarily archaeal type.  SMC (structural maintenance of
           chromosomes) proteins bind DNA and act in organizing and
           segregating chromosomes for partition. SMC proteins are
           found in bacteria, archaea, and eukaryotes. It is found
           in a single copy and is homodimeric in prokaryotes, but
           six paralogs (excluded from this family) are found in
           eukarotes, where SMC proteins are heterodimeric. This
           family represents the SMC protein of archaea and a few
           bacteria (Aquifex, Synechocystis, etc); the SMC of other
           bacteria is described by TIGR02168. The N- and
           C-terminal domains of this protein are well conserved,
           but the central hinge region is skewed in composition
           and highly divergent.
          Length = 1164

 Score = 28.1 bits (63), Expect = 6.9
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 10/97 (10%)

Query: 508 EKMVKDAEMNAEMDKKRREAVETKNHAESLIYS------TEQSLREHGDKIAEAEQKSIR 561
           E   + AE   E+   R +  + K     L           Q L E    +  A    I 
Sbjct: 375 EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADL-NAAIAGIE 433

Query: 562 ESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKA 598
             I+ L     D      +IK+   KL +++ +L K 
Sbjct: 434 AKINELEEEKEDKA---LEIKKQEWKLEQLAADLSKY 467


>gnl|CDD|185543 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional.
          Length = 504

 Score = 28.0 bits (63), Expect = 7.4
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 13/91 (14%)

Query: 320 QDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPD--EVVAMGAAIQAGVL 377
           +DAG+   +++ + + GG+T+   + Q   D   K     V P+  E  A+GAA+ AG L
Sbjct: 401 KDAGI---ELNSLRVDGGLTKNKLLMQFQADILGK---DIVVPEMAETTALGAALLAG-L 453

Query: 378 QGDVKDLLLLDVTPLSLGIETLGGVFTSIID 408
              V       +  +   I      F+  + 
Sbjct: 454 AVGVWK----SLEEVKKLIRRSNSTFSPQMS 480


>gnl|CDD|179009 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
           protein; Reviewed.
          Length = 782

 Score = 27.9 bits (63), Expect = 7.6
 Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 19/107 (17%)

Query: 504 SEDIEKMVKDAEMNAEMDKKRREAVETKNH-AESLIYSTEQSLREHGDKIAEAEQKSIRE 562
            E + +++   E      +  RE  E K   AE+L+   E+   E  +K  + +++    
Sbjct: 515 KEKLNELIASLE------ELEREL-EQKAEEAEALLKEAEKLKEELEEKKEKLQEE---- 563

Query: 563 SIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAA 609
                  LL +A   E + ++A ++  + +  + K + + Q    A+
Sbjct: 564 ----EDKLLEEA---EKEAQQAIKEAKKEADEIIKELRQLQKGGYAS 603


>gnl|CDD|179891 PRK04914, PRK04914, ATP-dependent helicase HepA; Validated.
          Length = 956

 Score = 27.9 bits (63), Expect = 7.7
 Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 13/99 (13%)

Query: 480 QVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIY 539
           Q+SA+++ T  A ++ ++A      +DI K+++ AE  AE   +     + K  A+  + 
Sbjct: 854 QLSAVNRHT--ASKL-VKAV----QQDIHKLLQKAEAQAEAQARELIE-QAKQEADEKL- 904

Query: 540 STE----QSLREHGDKIAEAEQKSIRESIDALRTLLNDA 574
           S E    ++L+     I + E +++      +   L+ A
Sbjct: 905 SAELSRLEALKAVNPNIRDDEIEALESQRQEVLEALDQA 943


>gnl|CDD|181012 PRK07515, PRK07515, 3-oxoacyl-(acyl carrier protein) synthase III;
           Reviewed.
          Length = 372

 Score = 27.9 bits (63), Expect = 7.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 312 VEPCKKCLQDAGLSPSDIDEVVL 334
           V   ++ L  AG +  DID V++
Sbjct: 100 VAAARQALARAGRTAEDIDAVIV 122


>gnl|CDD|178007 PLN02381, PLN02381, valyl-tRNA synthetase.
          Length = 1066

 Score = 27.9 bits (62), Expect = 8.0
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 578 ESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKD 637
           E K KE   K ++ +    KA  +AQ   D    T     + K   K DV D + E+  D
Sbjct: 25  EEKAKEKELKKLKAAQKEAKAKLQAQQASDG---TNVPKKSEKKSRKRDVEDENPEDFID 81

Query: 638 DEK---DKKKLS 646
            +     KK+LS
Sbjct: 82  PDTPFGQKKRLS 93


>gnl|CDD|181013 PRK07516, PRK07516, acetyl-CoA acetyltransferase; Provisional.
          Length = 389

 Score = 28.0 bits (63), Expect = 8.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 319 LQDAGLSPSDIDEVVL 334
           L  AG++  D+D + L
Sbjct: 34  LAHAGIAAGDVDGIFL 49


>gnl|CDD|161971 TIGR00634, recN, DNA repair protein RecN.  All proteins in this
           family for which functions are known are ATP binding
           proteins involved in the initiation of recombination and
           recombinational repair.
          Length = 563

 Score = 27.8 bits (62), Expect = 8.2
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 12/76 (15%)

Query: 517 NAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEA--EQKSIRESIDALRTLLNDA 574
             E D +R   +E +      +   ++  R++G  + E     + I+E +D L    +D+
Sbjct: 295 ELEFDPERLNEIEER------LAQIKRLKRKYGASVEEVLEYAEKIKEELDQL----DDS 344

Query: 575 DPDESKIKEATQKLME 590
           D     ++E   KL E
Sbjct: 345 DESLEALEEEVDKLEE 360


>gnl|CDD|181161 PRK07899, rpsA, 30S ribosomal protein S1; Reviewed.
          Length = 486

 Score = 27.7 bits (62), Expect = 9.3
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 360 VNPDEVVAMGAAIQAGVLQGDVKD 383
           V+P+EVV +G  ++A VLQ + K+
Sbjct: 74  VDPNEVVEVGDEVEALVLQKEDKE 97


>gnl|CDD|163023 TIGR02794, tolA_full, TolA protein.  TolA couples the inner
           membrane complex of itself with TolQ and TolR to the
           outer membrane complex of TolB and OprL (also called
           Pal). Most of the length of the protein consists of
           low-complexity sequence that may differ in both length
           and composition from one species to another,
           complicating efforts to discriminate TolA (the most
           divergent gene in the tol-pal system) from paralogs such
           as TonB. Selection of members of the seed alignment and
           criteria for setting scoring cutoffs are based largely
           conserved operon struction. //The Tol-Pal complex is
           required for maintaining outer membrane integrity. Also
           involved in transport (uptake) of colicins and
           filamentous DNA, and implicated in pathogenesis.
           Transport is energized by the proton motive force. TolA
           is an inner membrane protein that interacts with
           periplasmic TolB and with outer membrane porins ompC,
           phoE and lamB.
          Length = 346

 Score = 27.9 bits (62), Expect = 9.5
 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 10/139 (7%)

Query: 506 DIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESID 565
           ++E+     +   + ++  ++A E +  AE          +      AEAE+K+  E   
Sbjct: 93  ELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAK--AEAEAERKAKEE--- 147

Query: 566 ALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDVKD 625
                      +E+K K A +   +      KA  EA+AK +A A     +  AK +   
Sbjct: 148 -----AAKQAEEEAKAKAAAEAKKKAEEAKKKAEAEAKAKAEAEAKAKAEEAKAKAEAAK 202

Query: 626 DVVDADYEEIKDDEKDKKK 644
               A+     + E     
Sbjct: 203 AKAAAEAAAKAEAEAAAAA 221


>gnl|CDD|181385 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
           Reviewed.
          Length = 288

 Score = 27.5 bits (62), Expect = 9.7
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 18/55 (32%)

Query: 182 DKKDARTVIVFDFGGGTFDVSLLEMGDGVFE-VKATNGDTFLGGEDFDSCLVEHI 235
            K++A+ V VFD G           GDGVFE ++A NG  F         L EHI
Sbjct: 13  PKEEAK-VSVFDHG--------FLYGDGVFEGIRAYNGRVFR--------LKEHI 50


>gnl|CDD|181369 PRK08304, PRK08304, stage V sporulation protein AD; Validated.
          Length = 337

 Score = 27.5 bits (62), Expect = 9.8
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 313 EPCKKCLQDAGLSPSDIDEVVLVGG 337
           +  ++ LQ A L  SDID   L+ G
Sbjct: 62  DAIQQALQKANLKKSDID--YLLAG 84


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.313    0.130    0.352 

Gapped
Lambda     K      H
   0.267   0.0706    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 10,294,402
Number of extensions: 685190
Number of successful extensions: 1604
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1551
Number of HSP's successfully gapped: 114
Length of query: 652
Length of database: 5,994,473
Length adjustment: 100
Effective length of query: 552
Effective length of database: 3,833,673
Effective search space: 2116187496
Effective search space used: 2116187496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (26.9 bits)