HHsearch alignment for GI: 255764495 and conserved domain: TIGR01854
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase; InterPro: IPR010138 This entry represents LpxH, or UDP-2,3-diacylglucosamine hydrolase (or pyrophosphatase), which is an essential enzyme in Escherichia coli that catalyses the fourth step in lipid A biosynthesis. This reaction involves pyrophosphate bond hydrolysis of the precursor UDP-2,3-diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate and UMP . Several Gram-negative bacteria have homologues of LpxH and/or LpxH2, while others have only distant orthologues of LpxH or LpxH2, or lack these enzymes altogether .; GO: 0016462 pyrophosphatase activity, 0009245 lipid A biosynthetic process, 0005737 cytoplasm.
Probab=99.41 E-value=2.9e-12 Score=99.47 Aligned_cols=178 Identities=17% Similarity=0.199 Sum_probs=96.6
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH--C-CCCEEEECCCCCCCC----CHHH-HH
Q ss_conf 99411142788541000222100012100000123308999999999962--6-997999937444489----9899-99
Q gi|255764495|r 13 AHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILL--H-NVDHVSITGDIVNFT----CNRE-IF 84 (309)
Q Consensus 13 ~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~--~-~pD~vvitGDl~~~~----~~~~-~~ 84 (309)
T Consensus 2 lFISDLHL~~~-------------------------~P~iTa~Fl~FL~~~A~G~AdALYILGDLFeaWIGDD~~~~l~~ 56 (241)
T TIGR01854 2 LFISDLHLSEE-------------------------RPDITALFLDFLREEARGKADALYILGDLFEAWIGDDDPSALAR 56 (241)
T ss_pred CCCCCCCCCCC-------------------------CCHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCEECCCCCCHHHH
T ss_conf 50013458824-------------------------60789999999875233400002210120001146897217999
Q ss_pred HHHHHHHHHC-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC-EEEEEECCCCCCCCCC
Q ss_conf 9999998618-9971899945884222203567664324543134444455562127997198-7999832888888755
Q gi|255764495|r 85 TSTHWLRSIG-NPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNN-IALIGCSTAIATPPFS 162 (309)
Q Consensus 85 ~~~~~~~~l~-~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~s~~~~~~~~ 162 (309)
T Consensus 57 ~va~~~r~vsd~GV~~YF~~GNRDFLiG~~Far---~aG~~LLPD~-~Vi--------dLYG~k~Ll~HGDtLCTdD~aY 124 (241)
T TIGR01854 57 SVAEAIRAVSDQGVPCYFMHGNRDFLIGKRFAR---EAGMTLLPDE-SVI--------DLYGQKVLLMHGDTLCTDDEAY 124 (241)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH---HHCCEECCCH-HHH--------HHCCCCEEEEECCCCCHHHHHH
T ss_conf 999999987328907984059851566689999---7088107862-465--------5548827995378630201899
Q ss_pred --------------CCCEECHHHHHHHHHHHHHCCCCC---CE------EEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf --------------476008999999999985243369---70------8999837688876431101279789999998
Q gi|255764495|r 163 --------------ANGYFGQEQAHATSKLLRKANKKG---FF------RIIMMHHPPVLDTSSLYNRMFGIQRFQKMIW 219 (309)
Q Consensus 163 --------------~~g~~~~~q~~~l~~~L~~~~~~~---~~------~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~ 219 (309)
T Consensus 125 q~FR~~vh~p~lQ~lFl~LPL~~R~~lA~k~R~~S~~~~~~K~~Gdqaqf~~ImD--------------V~~~~v~~~~~ 190 (241)
T TIGR01854 125 QAFRAKVHQPWLQRLFLLLPLAVRVKLARKIRAESRADKQEKSQGDQAQFVDIMD--------------VNPAEVAAVMR 190 (241)
T ss_pred HHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC--------------CCHHHHHHHHH
T ss_conf 9999985174899998624489999999999998889863310135224212430--------------58668899998
Q ss_pred HCCCEEEEECCCCCCEEEEEEC
Q ss_conf 7498199998767532478716
Q gi|255764495|r 220 HEGADLILHGHTHLNSLHWIKN 241 (309)
Q Consensus 220 ~~~v~lvl~GH~H~~~~~~~~~ 241 (309)
T Consensus 191 ~~~v~~lIHGHTHRpAiH~~~~ 212 (241)
T TIGR01854 191 RYGVDLLIHGHTHRPAIHELQA 212 (241)
T ss_pred HCCCCEEECCCCCCCCCCEECC
T ss_conf 7386143067879862241205