HHsearch results for GI: 255764495 and protein with PDBid: 1ii7_A
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=99.90 E-value=1.7e-23 Score=172.04 Aligned_cols=239 Identities=18% Similarity=0.162 Sum_probs=118.4
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC--CHHHHHHHH
Q ss_conf 788994111427885410002221000121000001233089999999999626997999937444489--989999999
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFT--CNREIFTST 87 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~--~~~~~~~~~ 87 (309)
-||+|+||+|||..... ...+.......++++++.+.+++||+|+++||+++.+ +.+....+.
T Consensus 1 Mkilh~SD~HlG~~~~~---------------~~~~~~~~~~~~~~~v~~a~~~~vD~vli~GDlfd~~~~~~~~~~~~~ 65 (333)
T 1ii7_A 1 MKFAHLADIHLGYEQFH---------------KPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAI 65 (333)
T ss_dssp CEEEEECCCCBTCCGGG---------------CHHHHHHHHHHHHHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHH
T ss_pred CEEEEEECCCCCCCCCC---------------CHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 97799913888888778---------------445799999999999999987399999989887889989999999999
Q ss_pred HHHHHHCC-CCCEEEEECCCCCCCCCHHH-HHHHHHH-HHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf 99986189-97189994588422220356-7664324-543134444455562127997198799983288888875547
Q gi|255764495|r 88 HWLRSIGN-PHDISIVPGNHDAYISGAKE-KSLHAWK-DYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSAN 164 (309)
Q Consensus 88 ~~~~~l~~-~~~v~~v~GNHD~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~ 164 (309)
+++..|.. .+|+++|+||||.+...... ....... ..........................++.- ..........
T Consensus 66 ~~~~~l~~~~ipv~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 143 (333)
T 1ii7_A 66 ALLQIPKEHSIPVFAIEGNHDRTQRGPSVLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKG--VYKDLEIHGM 143 (333)
T ss_dssp HHHHHHHTTTCCEEEECCTTTCCSSSCCHHHHHHHTTSCEECEEESSCCCSSSEEEEECTTSCEEEEE--EETTEEEEEE
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHCCHHHHHHHHHCCCEEEECCCCCCCCCEEEECCCCCCCEEEEEC--CCCCCEEECC
T ss_conf 99999986899599964666621000357888986696487045554444405520223652157404--6676134223
Q ss_pred CEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCC
Q ss_conf 60089999999999852433697089998376888764311012797899999987498199998767532478716998
Q gi|255764495|r 165 GYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKK 244 (309)
Q Consensus 165 g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~ 244 (309)
............+.+..........|+++|+................ .......+++++++||+|.++.....+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~---~~~~~~~~~d~v~~GH~H~~~~~~~~~--- 217 (333)
T 1ii7_A 144 KYMSSAWFEANKEILKRLFRPTDNAILMLHQGVREVSEARGEDYFEI---GLGDLPEGYLYYALGHIHKRYETSYSG--- 217 (333)
T ss_dssp CCCCHHHHHSSTTHHHHHCCCCSSEEEEEECCBHHHHHTTTCCCCSB---CGGGSCTTCSEEEEESCSSCEEEEETT---
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCC---CCCCCCCCCCEEECCCCCCCEEECCCC---
T ss_conf 20046788999875431248877736888631245556677643212---210144468779727675873524399---
Q ss_pred CEEEEEECCCCCC-CCCCCCCCCEEEEEE
Q ss_conf 6899995762357-788887785489999
Q gi|255764495|r 245 LIPVVGIASASQK-VHSNKPQASYNLFYI 272 (309)
Q Consensus 245 ~~~~~~~~s~~~~-~~~~~~~~~y~li~i 272 (309)
.+++.+||.... +...+...++.++.+
T Consensus 218 -~~i~y~GS~~~~~f~e~~~~~~~~~~~~ 245 (333)
T 1ii7_A 218 -SPVVYPGSLERWDFGDYEVRYEWDGIKF 245 (333)
T ss_dssp -EEEEECCCSSCCSGGGCSEEEEECSSSE
T ss_pred -CEEEECCCCCCCCCCCCCCCCCEEEEEE
T ss_conf -3699859831227652366663599996