HHsearch results for GI: 255764495 and protein with PDBid: 1s3l_A
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC structure funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=99.72 E-value=6.5e-16 Score=122.08 Aligned_cols=163 Identities=18% Similarity=0.178 Sum_probs=102.8
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHH
Q ss_conf 32553278899411142788541000222100012100000123308999999999962699799993744448998999
Q gi|255764495|r 4 RYTTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREI 83 (309)
Q Consensus 4 ~~~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~ 83 (309)
+|.++| ||+-|||+|- ....|+++++.++++++|.|+++||++.. .
T Consensus 21 ~~~~~M-KI~iiSDiHg----------------------------n~~ale~vl~~~~~~~~D~vi~lGDiv~~---~-- 66 (190)
T 1s3l_A 21 YFQGHM-KIGIMSDTHD----------------------------HLPNIRKAIEIFNDENVETVIHCGDFVSL---F-- 66 (190)
T ss_dssp -----C-EEEEECCCTT----------------------------CHHHHHHHHHHHHHSCCSEEEECSCCCST---H--
T ss_pred CCCCCC-EEEEEECCCC----------------------------CHHHHHHHHHHHHHCCCCEEEECCCCCCH---H--
T ss_conf 236875-8999980899----------------------------96999999999975599999987883898---9--
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 99999998618997189994588422220356766432454313444445556212799719879998328888887554
Q gi|255764495|r 84 FTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSA 163 (309)
Q Consensus 84 ~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~ 163 (309)
..+.+..+ ..|+++|.||||.......... ....... . ......+
T Consensus 67 --~~~~l~~~--~~~~~~V~GNhD~~~~~~~~~~-----~~~~~~~----------~---~~~~~~~------------- 111 (190)
T 1s3l_A 67 --VIKEFENL--NANIIATYGNNDGERCKLKEWL-----KDINEEN----------I---IDDFISV------------- 111 (190)
T ss_dssp --HHHHGGGC--SSEEEEECCTTCCCHHHHHHHH-----HHHCTTC----------E---EESEEEE-------------
T ss_pred --HHHHHHHC--CCCEEEEECCCCCCHHHHHHHH-----HHCCCCC----------C---CCCEEEE-------------
T ss_conf --99998734--7608997276543035577776-----5312222----------3---5621346-------------
Q ss_pred CCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCC
Q ss_conf 76008999999999985243369708999837688876431101279789999998749819999876753247871699
Q gi|255764495|r 164 NGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEK 243 (309)
Q Consensus 164 ~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~ 243 (309)
.. ...+|+++|.++ .+.+..++...++++++|||+|.+......+
T Consensus 112 -------------------~~-~~~~i~l~Hg~~-------------~~~l~~~~~~~~~div~~GHTH~~~~~~~~~-- 156 (190)
T 1s3l_A 112 -------------------EI-DDLKFFITHGHH-------------QSVLEMAIKSGLYDVVIYGHTHERVFEEVDD-- 156 (190)
T ss_dssp -------------------EE-TTEEEEEEESCC-------------HHHHHHHHHHSCCSEEEEECSSCCEEEEETT--
T ss_pred -------------------EE-CCCEEEEEECCC-------------HHHHHHHHHCCCCCEEEECCCCCCCEEEECC--
T ss_conf -------------------75-484899998981-------------2657888642797699999957632799999--
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 86899995762357788887785489999538
Q gi|255764495|r 244 KLIPVVGIASASQKVHSNKPQASYNLFYIEKK 275 (309)
Q Consensus 244 ~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~ 275 (309)
..+++.||++..+. + .++|.+++++.+
T Consensus 157 --~~~iNPGSvg~pr~--~-~~s~aild~~~~ 183 (190)
T 1s3l_A 157 --VLVINPGECCGYLT--G-IPTIGILDTEKK 183 (190)
T ss_dssp --EEEEECCCSSCTTT--S-CCEEEEEETTTT
T ss_pred --EEEEECCCCCCCCC--C-CCEEEEEECCCC
T ss_conf --99997999888899--9-977999994799