HHSEARCH alignment of GI: 255764495 and SCOP domain: d1z2wa1

Alignment
>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.71  E-value=2.8e-16  Score=122.89  Aligned_cols=175  Identities=18%  Similarity=0.297  Sum_probs=109.5

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             78899411142788541000222100012100000123308999999999962699799993744448998999999999
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHW   89 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~   89 (309)
                      -||+.|||+|......                         .+-+.+.+.++..++|.|+++||++.   +    ...++
T Consensus         1 MkI~viSD~H~~~~~~-------------------------~l~~~~~~~~~~~~~D~Ii~~GDi~~---~----e~l~~   48 (182)
T d1z2wa1           1 MLVLVLGDLHIPHRCN-------------------------SLPAKFKKLLVPGKIQHILCTGNLCT---K----ESYDY   48 (182)
T ss_dssp             CEEEEECCCCBTTTCS-------------------------SCCHHHHTTCCTTSCSEEEECSCCBS---H----HHHHH
T ss_pred             CEEEEEEECCCCCCCH-------------------------HHHHHHHHHHCCCCCCEEEECCCCCC---H----HHHHH
T ss_conf             9899991258897501-------------------------46899999845358988999257653---4----56898


Q ss_pred             HHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEECH
Q ss_conf             98618997189994588422220356766432454313444445556212799719879998328888887554760089
Q gi|255764495|r   90 LRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQ  169 (309)
Q Consensus        90 ~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~  169 (309)
                      ++.+..  ++++|.||||......                                ....+-                  
T Consensus        49 l~~~~~--~v~~V~GN~D~~~~~p--------------------------------~~~~~~------------------   76 (182)
T d1z2wa1          49 LKTLAG--DVHIVRGDFDENLNYP--------------------------------EQKVVT------------------   76 (182)
T ss_dssp             HHHHCS--EEEECCCTTCCCTTSC--------------------------------SEEEEE------------------
T ss_pred             HHHHCC--CEEEEECCCCCCCCCC--------------------------------EEEEEE------------------
T ss_conf             875289--6599937867665422--------------------------------388999------------------


Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf             99999999985243369708999837688876431101279789999998749819999876753247871699868999
Q gi|255764495|r  170 EQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVV  249 (309)
Q Consensus       170 ~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~  249 (309)
                                     -...++.++|.+.....       ...+.+.+..+..++++++|||+|.+......+    ..++
T Consensus        77 ---------------~~g~~i~~~Hg~~~~~~-------~~~~~l~~~~~~~~~divi~GHTH~p~~~~~~~----~~~i  130 (182)
T d1z2wa1          77 ---------------VGQFKIGLIHGHQVIPW-------GDMASLALLQRQFDVDILISGHTHKFEAFEHEN----KFYI  130 (182)
T ss_dssp             ---------------ETTEEEEEECSCCCCBT-------TCHHHHHHHHHHHSSSEEECCSSCCCEEEEETT----EEEE
T ss_pred             ---------------ECCCEEEEEECCCCCCC-------CCHHHHHHHHHCCCCCEEEECCCCCCEEEEECC----EEEE
T ss_conf             ---------------86969999968877887-------788999998762579979978767634999899----9999


Q ss_pred             EECCCCCCCCC--CCCCCCEEEEEEECCCCEEEEEEEEEECCCCCEEEEEC
Q ss_conf             95762357788--88778548999953898389999995137761157531
Q gi|255764495|r  250 GIASASQKVHS--NKPQASYNLFYIEKKNEYWTLEGKRYTLSPDSLSIQKD  298 (309)
Q Consensus       250 ~~~s~~~~~~~--~~~~~~y~li~i~~~~~~~~v~~~r~~~~~d~~~~~~~  298 (309)
                      +.||++..+..  ....++|.+++++.+    .+++..+.+..+...+++-
T Consensus       131 NPGSv~~pr~~~~~~~~~syaild~~~~----~v~~~~~~l~~~~v~~~~~  177 (182)
T d1z2wa1         131 NPGSATGAYNALETNIIPSFVLMDIQAS----TVVTYVYQLIGDDVKVERI  177 (182)
T ss_dssp             ECCCTTCCCCSSCSCCCCEEEEEEEETT----EEEEEEEEEETTEEEEEEE
T ss_pred             ECCCCCCCCCCCCCCCCCEEEEEEEECC----EEEEEEEEECCCCEEEEEE
T ss_conf             6998888888888887777999998099----9999999942992999999


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Vacuolar protein sorting 29, VPS29
species: Mouse (Mus musculus) [TaxId: 10090]