RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764495|ref|YP_003065022.2| putative phosphoesterase
protein [Candidatus Liberibacter asiaticus str. psy62]
(309 letters)
>gnl|CDD|161962 TIGR00619, sbcd, exonuclease SbcD. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University).
Length = 253
Score = 33.6 bits (77), Expect = 0.068
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 33 RIIGLVNWH----FNRKKYFSKEVANL-LINDILL-HNVDHVSITGDIVNFTCN-----R 81
RI+ +WH +++ A L + + +D + + GD+ + T N +
Sbjct: 2 RILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFD-TANPPAEAQ 60
Query: 82 EIFTSTHWLRSIGNPHDISIVPGNHD--AYISGAKE 115
E+F + S NP I ++ GNHD +S AK+
Sbjct: 61 ELFNAFFRNLSDANPIPIVVISGNHDSAQRLSAAKK 96
>gnl|CDD|179722 PRK04036, PRK04036, DNA polymerase II small subunit; Validated.
Length = 504
Score = 28.8 bits (65), Expect = 1.7
Identities = 10/15 (66%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
Query: 96 PHDISIV--PGNHDA 108
P DI I+ PGNHDA
Sbjct: 328 PEDIKIIISPGNHDA 342
>gnl|CDD|129135 TIGR00024, SbcD_rel_arch, putative phosphoesterase,
SbcD/Mre11-related. Members of this uncharacterized
family share a motif approximating
DXH(X25)GDXXD(X25)GNHD as found in several
phosphoesterases, including the nucleases SbcD and
Mre11. SbcD is a subunit of the SbcCD nuclease of E.
coli that can cleave DNA hairpins to unblock stalled DNA
replication. All members of this family are archaeal.
Length = 225
Score = 28.7 bits (64), Expect = 1.8
Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 20/105 (19%)
Query: 13 AHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITG 72
A I+D+HL G H + + I + L D I
Sbjct: 18 AVIADLHL---------------GFER-HLDEQGVMVPGFQFREIIERALSIADKYGIEA 61
Query: 73 DIVNFTCNREIFTSTHW--LRSIG--NPHDISIVPGNHDAYISGA 113
I+N E W +R D+ ++ GNHDA I
Sbjct: 62 LIINGDLKHEFKKGLEWRFIREFIEVTFRDLILIRGNHDALIPYI 106
>gnl|CDD|150300 pfam09587, PGA_cap, Bacterial capsule synthesis protein PGA_cap.
This protein is a putative poly-gamma-glutamate capsule
biosynthesis protein found in bacteria.
Poly-gamma-glutamate is a natural polymer that may be
involved in virulence and may help bacteria survive in
high salt concentrations. It is a surface-associated
protein.
Length = 237
Score = 28.7 bits (65), Expect = 2.1
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 13/91 (14%)
Query: 147 IALIGCSTAIATPPFSANGYFGQEQAHAT-SKLLRKANKKGFFRIIMMHHPPVLDTSSLY 205
IA + + +R+A KK I+ +H
Sbjct: 131 IAFLAYTYGTNGWGAGPYRPGVNPLDEEKIKADIRRAKKKADIVIVSLHWG--------V 182
Query: 206 NRMFGIQRFQKMIWHE----GADLILHGHTH 232
+ Q+ + H GADL++ H H
Sbjct: 183 EYQYEPTPEQRELAHALIDAGADLVIGHHPH 213
>gnl|CDD|132655 TIGR03616, RutG, pyrimidine utilization transport protein G. This
protein is observed in operons extremely similar to that
characterized in E. coli K-12 responsible for the import
and catabolism of pyrimidines, primarily uracil. This
protein is a member of the uracil-xanthine permease
family defined by TIGR00801. As well as the The
Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Length = 429
Score = 28.7 bits (64), Expect = 2.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 1 MTKRYTTIMFVLAHISDIHLSYSPSF 26
+TK Y+T++FV A + I L +SP F
Sbjct: 316 VTKVYSTLVFVAAAVFAILLGFSPKF 341
>gnl|CDD|163441 TIGR03729, acc_ester, putative phosphoesterase. Members of this
protein family belong to the larger family pfam00149
(calcineurin-like phosphoesterase), a family largely
defined by small motifs of metal-chelating residues. The
subfamily in this model shows a good but imperfect
co-occurrence in species with domain TIGR03715 that
defines a novel class of signal peptide typical of the
accessory secretory system.
Length = 239
Score = 28.0 bits (63), Expect = 2.9
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 41 HFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTH-WLRSIGNPHDI 99
H + + ++E+ L + +DH+ I GDI N F + ++ + I
Sbjct: 9 HIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISND------FQRSLPFIEKLQELKGI 62
Query: 100 SI--VPGNHD 107
+ GNHD
Sbjct: 63 KVTFNAGNHD 72
>gnl|CDD|162562 TIGR01854, lipid_A_lpxH, UDP-2,3-diacylglucosamine hydrolase. This
model represents LpxH, UDP-2,3-diacylglucosamine
hydrolase, and essential enzyme in E. coli that
catalyzes the fourth step in lipid A biosynthesis. Note
that Pseudomonas aeruginosa has both a member of this
family that shares this function and a more distant
homolog, designated LpxH2, that does not. Many species
that produce lipid A lack an lpxH gene in this family;
some of those species have an lpxH2 gene instead,
although for which the function is unknown.
Length = 231
Score = 27.8 bits (62), Expect = 3.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 222 GADLILHGHTHLNSLH 237
G D ++HGHTH ++H
Sbjct: 185 GVDRLIHGHTHRPAIH 200
>gnl|CDD|181804 PRK09369, PRK09369, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Validated.
Length = 417
Score = 27.7 bits (63), Expect = 3.8
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 206 NRMFGIQRFQKMIWHEGADLILHGHT 231
NR + +M GAD+ + GHT
Sbjct: 331 NRFMHVPELIRM----GADIEVDGHT 352
>gnl|CDD|165113 PHA02746, PHA02746, protein tyrosine phosphatase; Provisional.
Length = 323
Score = 26.9 bits (59), Expect = 6.3
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 176 SKLLRKANKKGFFRIIMMHHPPVLD-------TSSLYNRMFGIQRFQKMIWHEGADLILH 228
K N F +++ H V+D L RF + + + ++++
Sbjct: 12 FDFFDKTNHAKFCEFVLLEHAEVMDIPIRGTTNHFLKKENLKKNRFHDIPCWDHSRVVIN 71
Query: 229 GHTHLNSLHWIKNEKKLIPVVGIASASQKVHSN 261
H L ++ K I V +A +H+N
Sbjct: 72 AHESLKMFDVGDSDGKKIEVTSEDNAENYIHAN 104
>gnl|CDD|180394 PRK06090, PRK06090, DNA polymerase III subunit delta'; Validated.
Length = 319
Score = 27.1 bits (60), Expect = 6.7
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 236 LHWIKNEK--KLIPVVGIASASQKVHSNKPQASYNLFYIE 273
LH IK EK K I V I ++ + Y LF IE
Sbjct: 76 LHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIE 115
>gnl|CDD|184406 PRK13933, PRK13933, stationary phase survival protein SurE;
Provisional.
Length = 253
Score = 26.6 bits (59), Expect = 8.4
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 267 YNLFYIEKKNEYWTLEGKRYTLSPDSLSIQKDYSDIFY 304
+N ++ E+ +E K Y L D + +D++Y
Sbjct: 189 FNTYFSEEIDEE---GNKVYKLEGDINKDIYEGTDVYY 223
>gnl|CDD|182645 PRK10682, PRK10682, putrescine transporter subunit:
periplasmic-binding component of ABC superfamily;
Provisional.
Length = 370
Score = 26.4 bits (58), Expect = 8.9
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 112 GAKEKSLHA--WKDYITSDT 129
A++K+LH W DYI DT
Sbjct: 26 AAEQKTLHIYNWSDYIAPDT 45
>gnl|CDD|180027 PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase;
Provisional.
Length = 241
Score = 26.3 bits (59), Expect = 9.5
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 222 GADLILHGHTH 232
G D ++HGHTH
Sbjct: 187 GVDTLIHGHTH 197
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.136 0.421
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,096,625
Number of extensions: 317978
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 562
Number of HSP's successfully gapped: 19
Length of query: 309
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 216
Effective length of database: 3,984,929
Effective search space: 860744664
Effective search space used: 860744664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)