RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|255764495|ref|YP_003065022.2| putative phosphoesterase protein [Candidatus Liberibacter asiaticus str. psy62] (309 letters) >3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, hydrolase; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A Length = 330 Score = 63.0 bits (152), Expect = 7e-11 Identities = 43/252 (17%), Positives = 73/252 (28%), Gaps = 43/252 (17%) Query: 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDI--LLHNVDH 67 +VL HISD HL +R+ G V+ + + L+ + D Sbjct: 26 YVLLHISDTHLIGGD-------RRLYGAVD---------ADDRLGELLEQLNQSGLRPDA 69 Query: 68 VSITGDIVNF--TCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYI 125 + TGD+ + + ++ V GNHD K A Sbjct: 70 IVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHDDRAELRKFLLDEAP-SMA 128 Query: 126 TSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKK 185 D C L + P +G Q ++ L Sbjct: 129 PLDRVCMIDGLRIIVLDT--------------SVPGHHHGEIRASQLGWLAEELATPAPD 174 Query: 186 GFFRIIMMHHPPVLDTSSLYNRM--FGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEK 243 G + +HHPP+ + + +++ IL GH H ++ Sbjct: 175 GTI--LALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRAILAGHLHYSTNATFVG-- 230 Query: 244 KLIPVVGIASAS 255 IPV ++ Sbjct: 231 --IPVSVASATC 240 >1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A Length = 333 Score = 60.2 bits (144), Expect = 6e-10 Identities = 34/235 (14%), Positives = 60/235 (25%), Gaps = 21/235 (8%) Query: 12 LAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSIT 71 AH++DIHL G +H +++ E + + NVD + I Sbjct: 3 FAHLADIHL---------------GYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIA 47 Query: 72 GDIV---NFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSD 128 GD+ + + + + GNHD G +L + Sbjct: 48 GDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNHDRTQRGPSVLNLLEDFGLVYVI 107 Query: 129 TTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFF 188 + R Y A ++L++ + Sbjct: 108 GMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLFRPTDN 167 Query: 189 RIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEK 243 I+M+H + + F EG GH H Sbjct: 168 AILMLHQGVREVSEARGEDYF---EIGLGDLPEGYLYYALGHIHKRYETSYSGSP 219 >2q8u_A Exonuclease, putative; TM1635, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.20A {Thermotoga maritima MSB8} Length = 336 Score = 58.1 bits (139), Expect = 2e-09 Identities = 36/225 (16%), Positives = 70/225 (31%), Gaps = 19/225 (8%) Query: 12 LAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSIT 71 + H SD HL + R + K+ + ++ + VD + +T Sbjct: 21 ILHTSDWHLGVTSWTSSRPVDR------------REELKKALDKVVEEAEKREVDLILLT 68 Query: 72 GDIVNFTCN---REIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSD 128 GD+++ N + +L+ + + ++PGNHD + + IT Sbjct: 69 GDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNHDWKGLKLFGNFVTSISSDITFV 128 Query: 129 TTCSTGKKLFPYLRIRNNIALIGCSTA-IATPPFSANGYFGQEQAHATSKLLRKANKKGF 187 + + + + + ++ + G F +KL +A KK Sbjct: 129 MSF---EPVDVEAKRGQKVRILPFPYPDESEALRKNEGDFRFFLESRLNKLYEEALKKED 185 Query: 188 FRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH 232 F I M H + + D GH H Sbjct: 186 FAIFMGHFTVEGLAGYAGIEQGREIIINRALIPSVVDYAALGHIH 230 >1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6 Length = 228 Score = 57.5 bits (137), Expect = 4e-09 Identities = 20/177 (11%), Positives = 43/177 (24%), Gaps = 10/177 (5%) Query: 56 LINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKE 115 + D +++ G+++ + + + VPG DA I Sbjct: 24 FVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFR-ILSEAHLPTAYVPGPQDAPIWEYLR 82 Query: 116 KSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHAT 175 ++ + + + R + G IA + A Sbjct: 83 EAANVELVH------PEMRNVHETFTFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVA 136 Query: 176 SKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH 232 L+ + + I + H G +I L+L Sbjct: 137 EYRLKALWELKDYPKIFLFHTMPYHK---GLNEQGSHEVAHLIKTHNPLLVLVAGKG 190 >2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12 Length = 322 Score = 53.6 bits (127), Expect = 5e-08 Identities = 41/284 (14%), Positives = 77/284 (27%), Gaps = 63/284 (22%) Query: 9 MFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANL--LINDILLHNVD 66 +F I+D+ + N+ R++Y+ L + V Sbjct: 5 VFTFGLIADVQYADIEDGE-----------NYLRTRRRYYRGSADLLRDAVLQWRRERVQ 53 Query: 67 HVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVP-----GNHDAY-----------I 110 V GDI++ NR S L ++ D V GNH+ Y + Sbjct: 54 CVVQLGDIID-GHNRRRDASDRALDTVMAELDACSVDVHHVWGNHEFYNFSRPSLLSSRL 112 Query: 111 SGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNN------------------------ 146 + A+ D I D + + + Sbjct: 113 NSAQRTGTDTGSDLIGDDIYAYEFSPAPNFRFVLLDAYDLSVIGREEESEKHTHSWRILT 172 Query: 147 --------IALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPV 198 + L S + NG F ++Q +L ++ K +I H P Sbjct: 173 QHNHNLQDLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVH 232 Query: 199 LDTSSLYNRMFGIQRFQKMIW-HEGADLILHGHTHLNSLHWIKN 241 + + + ++ H+ + GH H + Sbjct: 233 PCAADPICLAWNHEAVLSVLRSHQSVLCFIAGHDHDGGRCTDSS 276 >3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A Length = 274 Score = 52.8 bits (125), Expect = 1e-07 Identities = 43/250 (17%), Positives = 82/250 (32%), Gaps = 36/250 (14%) Query: 12 LAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSIT 71 LAHISD H +++ G ++ + + V+ L + L D V ++ Sbjct: 3 LAHISDTHFR-------SRGEKLYGFIDVN----AANADVVSQL---NALRERPDAVVVS 48 Query: 72 GDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTC 131 GDIVN E + L S+ P + ++PGNHD + + Sbjct: 49 GDIVNCGRPEEYQVARQILGSLNYP--LYLIPGNHDDKALFLEYLQPLCPQLGSD----- 101 Query: 132 STGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRII 191 +R + ++ ++ G+ E L + K I Sbjct: 102 ------ANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPAT--I 153 Query: 192 MMHHPPVLDTSSLYNRMFGIQRFQKMIW---HEGADLILHGHTHLNSLHWIKNEKKLIPV 248 MHHPP+ ++ + + + + I GH H ++ + + Sbjct: 154 FMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQ----ALI 209 Query: 249 VGIASASQKV 258 + +V Sbjct: 210 STLPGTVHQV 219 >3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein structure initiative, PSI-2; 1.90A {Candida albicans SC5314} SCOP: d.114.1.1 d.159.1.2 Length = 557 Score = 41.2 bits (96), Expect = 3e-04 Identities = 31/234 (13%), Positives = 74/234 (31%), Gaps = 24/234 (10%) Query: 14 HISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGD 73 H +D H YS + G + + + + + +L+ + D G Sbjct: 20 HTTDTHGWYSGHINQPLYHANWGDF---ISFTTHMRRIAHSRNQDLLLIDSGDRHDGNG- 75 Query: 74 IVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAY------------ISGAKEKSLHAW 121 + + T + + T +D+ + GNH+ Y ++ ++K + + Sbjct: 76 LSDITSPNGLKS-TPIFIKQD--YDL-LTIGNHELYLWENSKQEYETVVNHFQDKYVCSN 131 Query: 122 KDYITSDTTCSTGKKLFPYLRI-RNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLR 180 D + + Y I ++ F++ + Sbjct: 132 VDIRLDNGLFVPLGLKYKYFTTPIRGIRVMAFGFLFDFKRFNSGTRVTPMAETIHEPWFQ 191 Query: 181 KANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLN 234 +A K II++ H P+ + ++ Q ++ + GH+H+ Sbjct: 192 EALKHEVDLIIIVGHTPISHNWGEFYQVH--QYLRQFFP-DTIIQYFGGHSHIR 242 >2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national project on protein structural and functional analyses; 1.60A {Aquifex aeolicus VF5} SCOP: d.159.1.6 Length = 260 Score = 39.8 bits (91), Expect = 8e-04 Identities = 30/232 (12%), Positives = 65/232 (28%), Gaps = 40/232 (17%) Query: 29 LSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNF----------- 77 + P++++ + N+ ++ L I D + + G+I+ Sbjct: 3 IMPRKVLAIKNFKER------FDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAH 56 Query: 78 -------------TCNREIFTSTHWLRSIGN-PHDISIVPGNHDAYISGAKEKSLHAWKD 123 + I T + R IG +VPG +DA + + A Sbjct: 57 LARREPNRKVIHENEHYIIETLDKFFREIGELGVKTFVVPGKNDAPLKIFLRAAYEAETA 116 Query: 124 YITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKAN 183 Y + + R +IG + F + + + L Sbjct: 117 Y------PNIRVLHEGFAGWRGEFEVIGFGGLLTEHEFEEDFVLKYPRWYVEYILKFVNE 170 Query: 184 KKGFFRIIMMHHPPVLDTSSLYNRMFGI---QRFQKMIWHEGADLILHGHTH 232 K + + + PP+ + +I ++ + GH Sbjct: 171 LKPRRLVTIFYTPPIGEFVDRTPEDPKHHGSAVVNTIIKSLNPEVAIVGHVG 222 >3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae TIGR4} SCOP: d.159.1.7 Length = 176 Score = 38.2 bits (88), Expect = 0.002 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 15/104 (14%) Query: 186 GFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKL 245 G +II H ++ F Q+ E A + L+GH H+ S Sbjct: 76 GSTKIIQTHGHL-------FDINFNFQKLDYWAQEEEAAICLYGHLHVPSAWLEGK---- 124 Query: 246 IPVVGIASASQKVHSNKPQASYNLFYIEKKN---EYWTLEGKRY 286 I + S SQ + + Y I+ ++ T + + Y Sbjct: 125 ILFLNPGSISQPRGTI-RECLYARVEIDDSYFKVDFLTRDHEVY 167 >2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A Length = 342 Score = 38.0 bits (87), Expect = 0.003 Identities = 35/248 (14%), Positives = 77/248 (31%), Gaps = 26/248 (10%) Query: 63 HNVDHVSITGDIVN-FTCNREI--FTSTHWLRSIGNPHDISIVPGNHD------AYISGA 113 H+ +TGDI + E+ F ++ + ++ GNH+ Sbjct: 104 FGEGHMVMTGDIFDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYVH 163 Query: 114 KEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAI---ATPPFSANGYFGQE 170 + + + S ++ +LR +N I I + + + + + Sbjct: 164 QRYDIATTLINRPYNKLYSADTEIGQWLRSKNTIIKINDVLYMHGGISSEWISRELTLDK 223 Query: 171 Q---AHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLIL 227 A +K+ K + ++ F ++ H + I+ Sbjct: 224 ANALYRANVDASKKSLKADDLLNFLFFGNGPTWYRGYFSETFTEAELDTILQHFNVNHIV 283 Query: 228 HGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKNEY-WTLEGKRY 286 GHT + + + K V+ + S+ + +E +G R Sbjct: 284 VGHTSQERVLGLFHNK----VIAVDSSI--KVGKSGEL----LLLENNRLIRGLYDGTRE 333 Query: 287 TLSPDSLS 294 TL +SL+ Sbjct: 334 TLQENSLN 341 >2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A Length = 562 Score = 36.0 bits (82), Expect = 0.012 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 19/124 (15%) Query: 134 GKKLFPYLRIRN----NIALIGCS---TAIATPPFSANGYFGQEQAHATSKLLRKANKKG 186 G LFP RI +A++G S ++ P G + + KA +G Sbjct: 195 GDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEG 254 Query: 187 FFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLI 246 ++++ H + ++L R+ GI DLIL GHTH + + K I Sbjct: 255 ANAVVLLSHNGMQLDAALAERIRGI------------DLILSGHTHDLTPRPWRVGKTWI 302 Query: 247 PVVG 250 Sbjct: 303 VAGS 306 >1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1 Length = 426 Score = 34.5 bits (78), Expect = 0.030 Identities = 33/204 (16%), Positives = 62/204 (30%), Gaps = 15/204 (7%) Query: 34 IIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSI 93 +IG + + + N +L D + N T + Sbjct: 131 LIGDIGQTHDSNTTLTHYEQNSAKGQAVLFMGDLS--YSNRWPNHDNNRWDTWGRFSERS 188 Query: 94 GNPHDISIVPGNHD---AYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALI 150 GNH+ A G + + Y T +G L+ Y R + +I Sbjct: 189 VAYQPWIWTAGNHEIDYAPDIGEYQPFVPFTNRYPTPHEASGSGDPLW-YAIKRASAHII 247 Query: 151 GCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFG 210 S+ + Q + L K N+ +I++ H P+ ++ + Sbjct: 248 VLSS-------YSGFVKYSPQYKWFTSELEKVNRSETPWLIVLVHAPLYNSYEAHYMEGE 300 Query: 211 IQR--FQKMIWHEGADLILHGHTH 232 R F+ + D++ GH H Sbjct: 301 AMRAIFEPYFVYYKVDIVFSGHVH 324 >1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A Length = 516 Score = 34.1 bits (77), Expect = 0.036 Identities = 48/266 (18%), Positives = 81/266 (30%), Gaps = 28/266 (10%) Query: 7 TIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVD 66 T + H +D H F + GL KEVA + +LL D Sbjct: 6 TYKITVLHTNDHH-----GHFWRNEYGEYGLAAQKTLVDGIR-KEVAAEGGSVLLLSGGD 59 Query: 67 HVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHD---------AYISGAKEKS 117 + + F + +G +D + GNH+ AK Sbjct: 60 INTGVP-ESDLQDAEPDF---RGMNLVG--YDA-MAIGNHEFDNPLTVLRQQEKWAKFPL 112 Query: 118 LHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTA----IATPPFSANGYFGQEQAH 173 L A + T K + R IA+IG +T I P + + F + Sbjct: 113 LSA--NIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKIGNPEYFTDIEFRKPADE 170 Query: 174 ATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHL 233 A + + II H D + G + + +I+ GH+ Sbjct: 171 AKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQD 230 Query: 234 NSLHWIKNEKKLIPVVGIASASQKVH 259 +N+K++ V G + + Sbjct: 231 PVCMAAENKKQVDYVPGTPCKPDQQN 256 >1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 1w24_A 2r17_A Length = 192 Score = 34.0 bits (77), Expect = 0.051 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 13/110 (11%) Query: 188 FRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIP 247 F+I ++H + + D+++ GHTH +N K Sbjct: 90 FKIGLIHGHQ-------VIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHEN--KFYI 140 Query: 248 VVGIASASQKVHSNKPQASYNLFYIEKKNEYWTLEGKRYTLSPDSLSIQK 297 G A+ + S+ L I+ T+ Y L D + +++ Sbjct: 141 NPGSATGAYNALETNIIPSFVLMDIQAS----TVVTYVYQLIGDDVKVER 186 >1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A Length = 252 Score = 33.4 bits (75), Expect = 0.073 Identities = 20/216 (9%), Positives = 57/216 (26%), Gaps = 33/216 (15%) Query: 63 HNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWK 122 + ++ I G+IV ++ + ++ I+ G +D I+ + + Sbjct: 32 YEIEKYYILGNIVGL--FPYPKEVIEVIKDLTKKENVKIIRGKYDQIIAMSDPHATDPG- 88 Query: 123 DYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKA 182 I + + G E L Sbjct: 89 -----------------------YIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYL 125 Query: 183 N-KKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMI-WHEGADLILHGHTHLNSLHWIK 240 K G + ++ P+ ++ ++ + ++++ + + Sbjct: 126 VDKIGGNEVFGVYGSPINPFDGEVLAEQPTSYYEAIMRPVKDYEMLIVASPM----YPVD 181 Query: 241 NEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKN 276 + VV S +A++ L ++ Sbjct: 182 AMTRYGRVVCPGSVGFPPGKE-HKATFALVDVDTLK 216 >3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp} Length = 339 Score = 32.2 bits (72), Expect = 0.14 Identities = 39/315 (12%), Positives = 85/315 (26%), Gaps = 46/315 (14%) Query: 7 TIMFVLAHISDIHLSYSP-SFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNV 65 T+ + +D+H + +++ + GLV R ++ + N +L+ N Sbjct: 6 TVDLRIMETTDLHSNMMDFDYYKDAATEKFGLV-----RTASLIEQARAEVKNSVLVDNG 60 Query: 66 DHVSITGDIVNFTCNREIFTSTHW--LRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKD 123 D + + + ++ + + +++ + GNH+ A Sbjct: 61 DVIQGSP-LGDYMAAKGLKEGDVHPVYKAMNTLNYAVGNLGNHEFNYGLDFLHKALAGAK 119 Query: 124 YITSD---TTCSTGKKLFPYLRIRN-------------NIALIGCST---AIATPPFSAN 164 + + TGK +F I++ I IG Sbjct: 120 FPYVNANIIDAKTGKPMFTPYLIQDTRVVDSDGQIHTLRIGYIGFVPPQIMTWDKANLNG 179 Query: 165 GYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGAD 224 + K + + KG H + + ++ G D Sbjct: 180 KVTVNDITETARKYIPEMRAKGADXXXXXAHSGLSADPYQAMAENSVYYLSQV---PGVD 236 Query: 225 LILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKP--QASYNL-------FYIEKK 275 I+ GH H + + I IA + P + Sbjct: 237 AIMFGHAH---AVFPGKDFANIKGADIAKGTLN---GVPAVMPGMWGDHLGVVDLVLNND 290 Query: 276 NEYWTLEGKRYTLSP 290 + W + + P Sbjct: 291 SGKWQVTQSKAEARP 305 >2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7 Length = 215 Score = 30.1 bits (67), Expect = 0.60 Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 6/93 (6%) Query: 205 YNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQ 264 ++ D+++ GHTH + + L P G A+ + + Sbjct: 124 VLPWDDPGSLEQWQRRLDCDILVTGHTHKLRVFEKNGKLFLNP--GTATGAFSALTPDAP 181 Query: 265 ASYNLFYIEKKNEYWTLEGKRYTLSPDSLSIQK 297 S+ L ++ + Y L ++ Sbjct: 182 PSFMLMALQGN----KVVLYVYDLRDGKTNVAM 210 Score = 27.4 bits (60), Expect = 4.3 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 9/63 (14%) Query: 64 NVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKD 123 +++V TG++ C++E L++I ++ IV G+ D+ I +S + + Sbjct: 55 KINYVLCTGNV----CSQEYV---EMLKNIT--KNVYIVSGDLDSAIFNPDPESNGVFPE 105 Query: 124 YIT 126 Y+ Sbjct: 106 YVV 108 >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 Score = 29.9 bits (66), Expect = 0.74 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 14/134 (10%) Query: 164 NGYFG----QEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIW 219 G+ G +Q K+ +GF I+ L S+L + +F + + Sbjct: 20 AGHVGFDSLPDQLV------NKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPAT 73 Query: 220 HEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKNEYW 279 H + L +T+ ++ + ++ VG K S KP +I+ + E + Sbjct: 74 HTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE----FIDAQFEAY 129 Query: 280 TLEGKRYTLSPDSL 293 E + + Sbjct: 130 LQEELKIRRVLHTY 143 >2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} SCOP: d.126.1.6 Length = 377 Score = 29.6 bits (66), Expect = 0.96 Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 13/103 (12%) Query: 8 IMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNR------KKYFSKEVANLLINDIL 61 I + D + F ++ K + V+W FN YF + L+ + Sbjct: 86 IRIIEMTNDDAWIRDCGPTFLVNDKGDLRAVDWEFNAWGGLVDGLYFPWDQDALVARKVC 145 Query: 62 LHNVDHVSITGDIVNFTCNRE-------IFTSTHWLRSIGNPH 97 T D V + + T L NPH Sbjct: 146 EIEGVDSYKTKDFVLEGGSIHVDGEGTVLVTEMCLLHPSRNPH 188 >1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; phosphoglyerate mutase, SH3 domain binding, structural genomics, TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1 Length = 265 Score = 29.1 bits (64), Expect = 1.5 Identities = 7/75 (9%), Positives = 22/75 (29%), Gaps = 2/75 (2%) Query: 168 GQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLIL 227 GQ +A + +L+ + + ++ T++ + + + + Sbjct: 35 GQAEAVRSGELIAEHDLL--PDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERH 92 Query: 228 HGHTHLNSLHWIKNE 242 +G K Sbjct: 93 YGALQGLDKAETKAR 107 >1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7 Length = 208 Score = 29.0 bits (64), Expect = 1.5 Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 4/59 (6%) Query: 56 LINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSI----GNPHDISIVPGNHDAYI 110 ++ + I GD++N + + + H + V GN D+ + Sbjct: 44 VLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRGNCDSEV 102 Score = 28.7 bits (63), Expect = 2.0 Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 11/108 (10%) Query: 187 FFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLI 246 F I +L+ L+ + + + D++++GHTHL I Sbjct: 108 HFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGE----I 163 Query: 247 PVVGIASASQKVHSNKPQASYNLFYIEKKNEYWTLEG----KRYTLSP 290 S S N SY + + + L + ++P Sbjct: 164 FHFNPGSVSIPKGGNPA--SYGMLDNDVLSVI-ALNDQSIIAQVAINP 208 >2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Length = 363 Score = 28.3 bits (62), Expect = 2.0 Identities = 12/109 (11%), Positives = 27/109 (24%), Gaps = 1/109 (0%) Query: 147 IALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYN 206 + + P + L++ +KG R++ H Sbjct: 204 LGTMKGPLHGGAPSAVTKMLEDIGEKEHAEAYLKEKLEKGE-RLMGFGHRVYKTKDPRAE 262 Query: 207 RMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASAS 255 + + + + L K +KL V +A+ Sbjct: 263 ALRQKAEEVAGNDRDLDLALHVEAEAIRLLEIYKPGRKLYTNVEFYAAA 311 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 28.0 bits (61), Expect = 2.8 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 29/55 (52%) Query: 242 EKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKNEYWTLEGKRYTLSPDSLSIQ 296 EK+ A +K+ QAS L Y + +P +L+I+ Sbjct: 18 EKQ---------ALKKL-----QASLKL-YADDS-------------AP-ALAIK 43 >2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima} Length = 178 Score = 27.9 bits (61), Expect = 2.9 Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 9/54 (16%) Query: 188 FRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKN 241 I M H + ++ +++E +IL GHTH Sbjct: 103 VTIGMCHGWGA---------PWDLKDRLLKVFNEKPQVILFGHTHEPEDTVKAG 147 >2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest center for structural genomics, MCSG; 2.40A {Streptococcus pneumoniae TIGR4} SCOP: c.135.1.1 Length = 267 Score = 27.4 bits (60), Expect = 4.7 Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 1/105 (0%) Query: 119 HAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQE-QAHATSK 177 HA D S + I+++IA+ T I N +F Q T+ Sbjct: 67 HAPIFRPIKDLLASRPQNQIYIDLIKHDIAVYVSHTNIDIVENGLNDWFCQMLGIEETTY 126 Query: 178 LLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEG 222 L ++G RI + + + ++F + + + + E Sbjct: 127 LQETGPERGIGRIGNIQPQTFWELAQQVKQVFDLDSLRMVHYQED 171 >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 Length = 337 Score = 26.6 bits (58), Expect = 7.0 Identities = 13/124 (10%), Positives = 34/124 (27%), Gaps = 10/124 (8%) Query: 119 HAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKL 178 I + P ++ +I + + + T + + + T Sbjct: 178 GPINAIIPNPPK--LPSHHGPDVKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDD 235 Query: 179 LRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHW 238 + + I++ + T+ + + K + DL S+ Sbjct: 236 IIDVFEDTPRVILISAEDGLTSTAEIME-------YAKELGRSRNDLFE-IPVWRESITV 287 Query: 239 IKNE 242 + NE Sbjct: 288 VDNE 291 >2z8x_A Lipase; beta roll, calcium binding protein, RTX protein, hydrolase; 1.48A {Pseudomonas SP} PDB: 2z8z_A 2zj6_A 2zj7_A Length = 617 Score = 26.5 bits (58), Expect = 8.7 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 3/34 (8%) Query: 56 LINDILLHNVDHVSITGDIVNFTCNREIFTSTHW 89 + +H+ S T +IV+F + + ST W Sbjct: 267 TGASVGVHDAPKESATDNIVSFN---DHYASTAW 297 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.136 0.421 Gapped Lambda K H 0.267 0.0464 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,809,764 Number of extensions: 128164 Number of successful extensions: 438 Number of sequences better than 10.0: 1 Number of HSP's gapped: 423 Number of HSP's successfully gapped: 45 Length of query: 309 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 217 Effective length of database: 3,462,782 Effective search space: 751423694 Effective search space used: 751423694 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (26.0 bits)