RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|255764495|ref|YP_003065022.2| putative phosphoesterase
protein [Candidatus Liberibacter asiaticus str. psy62]
(309 letters)
>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog
zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}
Length = 320
Score = 54.0 bits (128), Expect = 1e-08
Identities = 33/283 (11%), Positives = 66/283 (23%), Gaps = 61/283 (21%)
Query: 9 MFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANL--LINDILLHNVD 66
+F I+D+ + N+ R++Y+ L + V
Sbjct: 3 VFTFGLIADVQYADIEDGE-----------NYLRTRRRYYRGSADLLRDAVLQWRRERVQ 51
Query: 67 HVSITGDIVN------FTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHA 120
V GDI++ +R + T L + + + S
Sbjct: 52 CVVQLGDIIDGHNRRRDASDRALDTVMAELDACSVDVHHVWGNHEFYNFSRPSLLSSRLN 111
Query: 121 WKDYITSDTTCSTGKKLFPYLRIRNN---------------------------------- 146
+DT
Sbjct: 112 SAQRTGTDTGSDLIGDDIYAYEFSPAPNFRFVLLDAYDLSVIGREEESEKHTHSWRILTQ 171
Query: 147 -------IALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVL 199
+ L S + NG F ++Q +L ++ K +I H P
Sbjct: 172 HNHNLQDLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHP 231
Query: 200 DTSSLYNRMFGIQRFQKMIW-HEGADLILHGHTHLNSLHWIKN 241
+ + + ++ H+ + GH H +
Sbjct: 232 CAADPICLAWNHEAVLSVLRSHQSVLCFIAGHDHDGGRCTDSS 274
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus
thermophilus [TaxId: 274]}
Length = 228
Score = 53.6 bits (127), Expect = 2e-08
Identities = 21/177 (11%), Positives = 45/177 (25%), Gaps = 10/177 (5%)
Query: 56 LINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKE 115
+ D +++ G+++ + + + S + VPG DA I
Sbjct: 24 FVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSE-AHLPTAYVPGPQDAPIWEYLR 82
Query: 116 KSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHAT 175
++ + + + R + G IA + A
Sbjct: 83 EAANVELVH------PEMRNVHETFTFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVA 136
Query: 176 SKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH 232
L+ + + I + H G +I L+L
Sbjct: 137 EYRLKALWELKDYPKIFLFHTMPYHK---GLNEQGSHEVAHLIKTHNPLLVLVAGKG 190
>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide
phosphodiesterase {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 256
Score = 52.1 bits (123), Expect = 6e-08
Identities = 35/246 (14%), Positives = 64/246 (26%), Gaps = 35/246 (14%)
Query: 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVS 69
+VL HISD HL + + + + L + D +
Sbjct: 5 YVLLHISDTHLIGGD-----------RRLYGAVDADDRLGELLEQLNQSG---LRPDAIV 50
Query: 70 ITGDIVNF--TCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITS 127
TGD+ + + ++ V GNHD K A
Sbjct: 51 FTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHDDRAELRKFLLDEAPSMAPLD 110
Query: 128 DTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGF 187
I + + P +G Q ++ L G
Sbjct: 111 RVC---------------MIDGLRIIVLDTSVPGHHHGEIRASQLGWLAEELATPAPDGT 155
Query: 188 FRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIP 247
+ P + ++ + +++ IL GH H ++ IP
Sbjct: 156 ILALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRAILAGHLHYSTNATFVG----IP 211
Query: 248 VVGIAS 253
V ++
Sbjct: 212 VSVASA 217
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ
{Enterobacter aerogenes [TaxId: 548]}
Length = 271
Score = 51.3 bits (121), Expect = 1e-07
Identities = 46/233 (19%), Positives = 77/233 (33%), Gaps = 32/233 (13%)
Query: 12 LAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSIT 71
LAHISD H +++ G ++ + + V+ L + L D V ++
Sbjct: 3 LAHISDTHFR-------SRGEKLYGFIDVN----AANADVVSQL---NALRERPDAVVVS 48
Query: 72 GDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTC 131
GDIVN E + L S+ P + ++PGNHD + L + SD
Sbjct: 49 GDIVNCGRPEEYQVARQILGSLNYP--LYLIPGNHDDK--ALFLEYLQPLCPQLGSDANN 104
Query: 132 STGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRII 191
R+ ++ ++ G+ E L + K I
Sbjct: 105 MRCAVDDFATRLLF---------IDSSRAGTSKGWLTDETISWLEAQLFEGGDKPAT--I 153
Query: 192 MMHHPPV---LDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKN 241
MHHPP+ G + + I GH H ++ +
Sbjct: 154 FMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQ 206
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956
{Aquifex aeolicus [TaxId: 63363]}
Length = 257
Score = 50.9 bits (120), Expect = 1e-07
Identities = 32/230 (13%), Positives = 66/230 (28%), Gaps = 40/230 (17%)
Query: 31 PKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTC----------- 79
P++++ + N+ ++ L I D + + G+I+
Sbjct: 2 PRKVLAIKNFKER------FDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLA 55
Query: 80 -------------NREIFTSTHWLRSIGN-PHDISIVPGNHDAYISGAKEKSLHAWKDYI 125
+ I T + R IG +VPG +DA + + A Y
Sbjct: 56 RREPNRKVIHENEHYIIETLDKFFREIGELGVKTFVVPGKNDAPLKIFLRAAYEAETAYP 115
Query: 126 TSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKK 185
+ R +IG + F + + + L K
Sbjct: 116 NIRVLHEG------FAGWRGEFEVIGFGGLLTEHEFEEDFVLKYPRWYVEYILKFVNELK 169
Query: 186 GFFRIIMMHHPP---VLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH 232
+ + + PP +D + + G +I ++ + GH
Sbjct: 170 PRRLVTIFYTPPIGEFVDRTPEDPKHHGSAVVNTIIKSLNPEVAIVGHVG 219
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 333
Score = 49.3 bits (116), Expect = 4e-07
Identities = 36/226 (15%), Positives = 64/226 (28%), Gaps = 25/226 (11%)
Query: 12 LAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSIT 71
AH++DIHL G +H +++ E + + NVD + I
Sbjct: 3 FAHLADIHL---------------GYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIA 47
Query: 72 GDIV-----NFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYIT 126
GD+ + ++ + P + + GNHD G +L +
Sbjct: 48 GDLFHSSRPSPGTLKKAIALLQIPKEHSIP--VFAIEGNHDRTQRGPSVLNLLEDFGLVY 105
Query: 127 SDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKG 186
+ R Y A ++L++ +
Sbjct: 106 VIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLFRPT 165
Query: 187 FFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH 232
I+M+H + + F I EG GH H
Sbjct: 166 DNAILMLHQGVREVSEARGEDYFEI---GLGDLPEGYLYYALGHIH 208
>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 251
Score = 37.3 bits (85), Expect = 0.002
Identities = 15/215 (6%), Positives = 54/215 (25%), Gaps = 31/215 (14%)
Query: 63 HNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWK 122
+ ++ I G+IV ++ + ++ I+ G +D I+ + +
Sbjct: 31 YEIEKYYILGNIVGL--FPYPKEVIEVIKDLTKKENVKIIRGKYDQIIAMSDPHATDPG- 87
Query: 123 DYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKA 182
+ Y + K+
Sbjct: 88 ---------------YIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKI---- 128
Query: 183 NKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIW-HEGADLILHGHTHLNSLHWIKN 241
G + ++ P+ ++ ++ + ++++ +
Sbjct: 129 ---GGNEVFGVYGSPINPFDGEVLAEQPTSYYEAIMRPVKDYEMLIVASPMYPVDAMTRY 185
Query: 242 EKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKN 276
+ + P + +A++ L ++
Sbjct: 186 GRVVCPGS-----VGFPPGKEHKATFALVDVDTLK 215
>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 173
Score = 36.7 bits (84), Expect = 0.003
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 15/104 (14%)
Query: 186 GFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKL 245
G +II H ++ F Q+ E A + L+GH H+ S
Sbjct: 73 GSTKIIQTHGHL-------FDINFNFQKLDYWAQEEEAAICLYGHLHVPSAWLEGK---- 121
Query: 246 IPVVGIASASQKVHSNKPQASYNLFYIEKKN---EYWTLEGKRY 286
I + S SQ + Y I+ ++ T + + Y
Sbjct: 122 ILFLNPGSISQP-RGTIRECLYARVEIDDSYFKVDFLTRDHEVY 164
>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 182
Score = 32.1 bits (72), Expect = 0.054
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 6/108 (5%)
Query: 190 IIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVV 249
+ + L + + D+++ GHTH E K
Sbjct: 75 VTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEH--ENKFYINP 132
Query: 250 GIASASQKVHSNKPQASYNLFYIEKKNEYWTLEGKRYTLSPDSLSIQK 297
G A+ + S+ L I+ T+ Y L D + +++
Sbjct: 133 GSATGAYNALETNIIPSFVLMDIQAS----TVVTYVYQLIGDDVKVER 176
>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29
{Cryptosporidium parvum [TaxId: 5807]}
Length = 193
Score = 31.6 bits (71), Expect = 0.097
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 13/110 (11%)
Query: 188 FRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIP 247
F+I +MH ++ D+++ GHTH + KL
Sbjct: 92 FKIGLMHGNQ-------VLPWDDPGSLEQWQRRLDCDILVTGHTHKLRVFEK--NGKLFL 142
Query: 248 VVGIASASQKVHSNKPQASYNLFYIEKKNEYWTLEGKRYTLSPDSLSIQK 297
G A+ + + S+ L ++ + Y L ++
Sbjct: 143 NPGTATGAFSALTPDAPPSFMLMALQGN----KVVLYVYDLRDGKTNVAM 188
Score = 25.4 bits (55), Expect = 6.3
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 64 NVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKD 123
+++V TG++ + L++I ++ IV G+ D+ I +S + +
Sbjct: 33 KINYVLCTGNVCSQEYVE-------MLKNITK--NVYIVSGDLDSAIFNPDPESNGVFPE 83
Query: 124 YIT 126
Y+
Sbjct: 84 YVV 86
>d1usha2 d.159.1.2 (A:26-362) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 337
Score = 31.5 bits (70), Expect = 0.10
Identities = 38/260 (14%), Positives = 78/260 (30%), Gaps = 32/260 (12%)
Query: 7 TIMFVLAHISDIHLSYSP-SFFELSPKRIIGLVNWHFNRKKYFSKEVANLLIN--DIL-- 61
T + H +D H + + E LV+ RK+ ++ + LL++ DI
Sbjct: 6 TYKITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGI--RKEVAAEGGSVLLLSGGDINTG 63
Query: 62 ---------LHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISG 112
+ +++ G N E LR ++ + + Y
Sbjct: 64 VPESDLQDAEPDFRGMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLL--SANIYQKS 121
Query: 113 AKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQA 172
E+ W + D + TA P ++ A
Sbjct: 122 TGERLFKPWALFKRQDLKIAVIGLTTDD-------------TAKIGNPEYFTDIEFRKPA 168
Query: 173 HATSKLLRKANKKGFFRIIM-MHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHT 231
++++ + II+ H D + G + + +I+ GH+
Sbjct: 169 DEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHS 228
Query: 232 HLNSLHWIKNEKKLIPVVGI 251
+N+K++ V G
Sbjct: 229 QDPVCMAAENKKQVDYVPGT 248
>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Candida albicans [TaxId:
5476]}
Length = 322
Score = 30.1 bits (67), Expect = 0.23
Identities = 33/234 (14%), Positives = 69/234 (29%), Gaps = 24/234 (10%)
Query: 12 LAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSIT 71
H +D H YS + G + + + + + +L+ + D
Sbjct: 14 FVHTTDTHGWYSGHINQPLYHANWGDF---ISFTTHMRRIAHSRNQDLLLIDSGDR--HD 68
Query: 72 GDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSL-----HAWKDYIT 126
G+ ++ + ST + GNH+ Y+ ++ H Y+
Sbjct: 69 GNGLSDITSPNGLKSTPIFIKQDYDL---LTIGNHELYLWENSKQEYETVVNHFQDKYVC 125
Query: 127 SDTTCSTGKKLFPYL--------RIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKL 178
S+ LF L I ++ F++
Sbjct: 126 SNVDIRLDNGLFVPLGLKYKYFTTPIRGIRVMAFGFLFDFKRFNSGTRVTPMAETIHEPW 185
Query: 179 LRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH 232
++A K II++ H P+ + + Q ++ + GH+H
Sbjct: 186 FQEALKHEVDLIIIVGHTPISHNWGEFYQ--VHQYLRQFFP-DTIIQYFGGHSH 236
>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex
aeolicus [TaxId: 63363]}
Length = 188
Score = 29.8 bits (66), Expect = 0.31
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 184 KKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNS 235
+ RI++ H+P + +++ + E DL++HGH H N
Sbjct: 103 EHKGKRILLSHYPAKDP--ITERYPDRQEMVREIYFKENCDLLIHGHVHWNR 152
>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human
(Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 28.8 bits (64), Expect = 0.63
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 67 HVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLH 119
VSI+G V TC + + W + N G+ D G+ E L
Sbjct: 5 KVSISGTTVILTCPQYPGSEILWQHNDKNI------GGDEDDKNIGSDEDHLS 51
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 28.0 bits (61), Expect = 1.1
Identities = 12/101 (11%), Positives = 23/101 (22%), Gaps = 4/101 (3%)
Query: 56 LINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSI----GNPHDISIVPGNHDAYIS 111
++ + I GD++N + + + H + V GN D+ +
Sbjct: 20 VLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRGNCDSEVD 79
Query: 112 GAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGC 152
N AL
Sbjct: 80 QMLLHFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQN 120
Score = 26.4 bits (57), Expect = 3.5
Identities = 10/55 (18%), Positives = 20/55 (36%)
Query: 187 FFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKN 241
F I +L+ L+ + + + D++++GHTHL
Sbjct: 84 HFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGE 138
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936
{Methanococcus jannaschii [TaxId: 2190]}
Length = 165
Score = 27.9 bits (61), Expect = 1.1
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 216 KMIWHEGADLILHGHTHLNSLHWIKN 241
I D++++GHTH + +
Sbjct: 106 MAIKSGLYDVVIYGHTHERVFEEVDD 131
>d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 283
Score = 27.5 bits (60), Expect = 1.6
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 4/60 (6%)
Query: 51 EVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTH----WLRSIGNPHDISIVPGNH 106
+ + L + ++ + + W PH ++ VPG+H
Sbjct: 201 RLLAMGRYARFLAGPRPGRSSAPVLLVRASEPLGDWQEERGDWRAHWDLPHTVADVPGDH 260
>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 100
Score = 27.2 bits (60), Expect = 1.8
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 67 HVSITGDIVNFTCNREIFTSTHWLR 91
VSI+G V TC + + W +
Sbjct: 9 KVSISGTSVELTCPLDSDENLKWEK 33
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 95
Score = 26.1 bits (58), Expect = 3.3
Identities = 6/47 (12%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 52 VANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTH----WLRSIG 94
+++L+I D + D I + ++ ++ G
Sbjct: 39 LSDLIITDEMFRTEDGRRSLSIAQTVGTRIHIVSVSNDPGQIVKKFG 85
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 26.4 bits (57), Expect = 3.6
Identities = 26/180 (14%), Positives = 45/180 (25%), Gaps = 28/180 (15%)
Query: 66 DHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYI 125
D + GD+V+ + V GNH+ + + +
Sbjct: 42 DLLISVGDLVDRGAEN------VECLELITFPWFRAVRGNHE-------QMMIDGLSERG 88
Query: 126 TSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQ---AHATSKLLRKA 182
+ G F L I + P ++ HA
Sbjct: 89 NVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHA-------- 140
Query: 183 NKKGFFRIIMMHHPPVLDTSSLYNRM-FGIQRFQKMIWHEGADLILHGHTHLNSLHWIKN 241
+ PV ++NR + + +GAD + GHT N
Sbjct: 141 ---DYPFDEYEFGKPVDHQQVIWNRERISNSQNGIVKEIKGADTFIFGHTPAVKPLKFAN 197
>d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus
mutans [TaxId: 1309]}
Length = 369
Score = 25.8 bits (56), Expect = 5.2
Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 13/103 (12%)
Query: 8 IMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNR------KKYFSKEVANLLINDIL 61
I + D + F ++ K + V+W FN YF + L+ +
Sbjct: 85 IRIIEMTNDDAWIRDCGPTFLVNDKGDLRAVDWEFNAWGGLVDGLYFPWDQDALVARKVC 144
Query: 62 LHNVDHVSITGDIVNFTCNRE-------IFTSTHWLRSIGNPH 97
T D V + + T L NPH
Sbjct: 145 EIEGVDSYKTKDFVLEGGSIHVDGEGTVLVTEMCLLHPSRNPH 187
>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 265
Score = 25.8 bits (56), Expect = 5.4
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 1/105 (0%)
Query: 119 HAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQE-QAHATSK 177
HA D S + I+++IA+ T I N +F Q T+
Sbjct: 65 HAPIFRPIKDLLASRPQNQIYIDLIKHDIAVYVSHTNIDIVENGLNDWFCQMLGIEETTY 124
Query: 178 LLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEG 222
L ++G RI + + + ++F + + + + E
Sbjct: 125 LQETGPERGIGRIGNIQPQTFWELAQQVKQVFDLDSLRMVHYQED 169
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR
{Staphylococcus aureus [TaxId: 1280]}
Length = 115
Score = 25.6 bits (56), Expect = 6.1
Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 34 IIGLVNWHFNRKKYFSKEVANLLINDILLHNV 65
+ G+V + + ++ N I L+ +
Sbjct: 84 VNGIVTFTHEQNINERIKLMNKFS-QIFLNGL 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.421
Gapped
Lambda K H
0.267 0.0665 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,226,943
Number of extensions: 57256
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 34
Length of query: 309
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,240,546
Effective search space: 277882304
Effective search space used: 277882304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)