HHsearch alignment for GI: 255764496 and conserved domain: COG0272

>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair].
Probab=92.82  E-value=0.28  Score=28.79  Aligned_cols=96  Identities=19%  Similarity=0.205  Sum_probs=70.5

Q ss_pred             EEEECCCCHHHH-HHHHHHHHHHHHHHH-HH-HHHHH-HHC--CC-CHHCCCCCCHHHHHHHHHH--HCCHHHHHHCCHH
Q ss_conf             488579989999-999887877887889-89-98643-214--77-1004888798999999998--0888989938988
Q gi|255764496|r  517 ALVLNMRDPILY-FIQRLRDEAHRFAIT-TH-RKRRK-KAA--YS-PLDEINGIGPLRKRLLLQS--FGTVKMISRSSPE  587 (616)
Q Consensus       517 ~i~l~~~~~~l~-~Lq~iRDEaHRFAi~-~h-Rk~r~-k~~--~S-~Ld~I~GIG~k~~~~Ll~~--Fgs~~~i~~As~e  587 (616)
T Consensus       400 ~~~~P~~CP~C~s~l~r~~~e~~~rC~n~~~C~aq~~e~l~hfvSr~AmdI~GLG~k~i~~L~e~~lI~~~~Dly~Lt~~  479 (667)
T COG0272         400 PIPFPTHCPVCGSELVREEGEVVIRCTNGLNCPAQLKERLIHFVSRNALDIDGLGEKIIEQLFEKGLIKDIADLYTLTEE  479 (667)
T ss_pred             CCCCCCCCCCCCCEEEECCCCEEEECCCCCCCHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHCCHH
T ss_conf             88899979889997674267556866898788588862334674478657777679999999973753787987737898


Q ss_pred             HHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             8862789998999999998547867
Q gi|255764496|r  588 TLASIEGISKKIACKIYNHFHKNTS  612 (616)
Q Consensus       588 eL~~v~gi~~~~A~~I~~~l~~~~~  612 (616)
T Consensus       480 ~l~~l~~~~~ks~~nLl~aIe~sK~  504 (667)
T COG0272         480 DLLSLEGFGEKSAENLLNAIEKSKK  504 (667)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf             8841622446579999999998604