HHsearch alignment for GI: 255764496 and conserved domain: COG0322

>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair].
Probab=100.00  E-value=0  Score=1318.83  Aligned_cols=569  Identities=44%  Similarity=0.723  Sum_probs=539.7

Q ss_pred             HHHCCCCCCEEEEECCCCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCC
Q ss_conf             12586788625888699888899601258788876137887787999999734442999828719999999988776187
Q gi|255764496|r    3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKP   82 (616)
Q Consensus         3 ~~~lP~~pGvY~~~~~~~~iiYvGKaknL~~Rv~syf~~~~~~~k~~~l~~~~~~ie~~~t~~e~eAlilE~~lIk~~~P   82 (616)
T Consensus         9 l~~lP~~PGvY~~~d~~g~VlYVGKAknLr~Rv~sYF~~~~~-~kt~~lv~~i~~iE~ivt~~E~EALlLE~nLIK~~~P   87 (581)
T COG0322           9 LKNLPHSPGVYLMKDENGTVLYVGKAKNLRKRVSSYFRGRLD-PKTAALVENIADIEYIVTDTETEALLLENNLIKKHKP   87 (581)
T ss_pred             HHHCCCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHCCCCC-HHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf             964899980389988999889996445678888986167985-8999999744663699748877788889867776389


Q ss_pred             CCEECCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf             20033646897726998088998459998123567843770378878999999999973011003554212478866244
Q gi|255764496|r   83 RFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLF  162 (616)
Q Consensus        83 ~yNi~LkDdk~yPyi~it~~~~~p~l~~~r~~~~~~~~yfGPf~~~~~~~~~l~~l~~~f~lR~C~~~~~~~~~~pCl~y  162 (616)
T Consensus        88 rYNvlLkDdKsYp~i~it~~e~~Pri~i~R~~~~~~~~yFGPy~s~~a~~~~l~ll~rlfplR~C~~~~~~~r~rpCl~Y  167 (581)
T COG0322          88 RYNVLLKDDKSYPYIKITLHEEFPRIAITRGLRKDKGKYFGPYPSAGAVRETLNLLQRLFPLRTCSDSVKRNRRRPCLYY  167 (581)
T ss_pred             CEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCHHH
T ss_conf             61377425897762896367666432453011016873689878634689999999976113316886433457864441


Q ss_pred             HHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---
Q ss_conf             55425866131220356655543234550387158999999999999863338888889999999986221100024---
Q gi|255764496|r  163 QIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---  239 (616)
Q Consensus       163 ~i~~C~gpC~~~is~~~Y~~~v~~~~~fL~G~~~~ii~~L~~~M~~aS~~l~FE~Aa~~RD~I~aL~~i~~~q~v~~---  239 (616)
T Consensus       168 ~i~rC~apC~~~is~e~Y~e~v~~~~~fL~G~~~~v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~l~~~q~v~~~~~  247 (581)
T COG0322         168 QIGRCLAPCVGLISEEEYREIVEEVKGFLKGKDDAVLQELEEKMEEASENLDFERAARLRDQIKALEKLQEKQAVSLFKL  247 (581)
T ss_pred             HHCCCCCCEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             00255566005578999999999999997698899999999999999875147989999999999999974563356774


Q ss_pred             CCCCHHHHCCCCCEEEEEEEEEECCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHEECCCCCHHHHHHHHH
Q ss_conf             54201110001883478899842474541011356677789978988877754321378981231026888578766654
Q gi|255764496|r  240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISF  319 (616)
Q Consensus       240 ~d~Dvi~i~~~~~~~~I~vl~vR~G~i~g~~~f~~~~~~~~~~~eil~~fI~qyY~~~~iP~~Iiv~~~~~~~~~l~~~L  319 (616)
T Consensus       248 ~~~Dv~a~~~~~~~~~v~vf~~R~Gkllg~~~~f~-~~~-~~~~~-~~~fi~Q~Y~~~~~P~~Ill~~~~~~~~-l~~~l  323 (581)
T COG0322         248 QDLDVIAGAVDGGEACVQVFFVRGGKLLGRRAYFP-LEN-EAEEE-LEAFILQFYKSNEIPKEILLPQELPEEE-LEEAL  323 (581)
T ss_pred             CCHHHHEEEECCCEEEEEEEEEECCHHCCCCCEEC-CCC-CCCHH-HHHHHHHHHCCCCCCCEEEECCCCCHHH-HHHHH
T ss_conf             11125023303986799987751431037754005-777-54057-9999999722788964578078877589-99999


Q ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf             32013433321256552667899999999986554323343389999999875156643516999707443775404888
Q gi|255764496|r  320 FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM  399 (616)
Q Consensus       320 ~~k~g~kV~i~~P~rG~kk~Ll~lA~~NA~~~l~~k~~~~~~~~~~l~~Lk~~L~L~~~p~rIE~fDiSh~~G~~~Vas~  399 (616)
T Consensus       324 ~~~~~~--~i~~p~~G~kk~l~~~A~~NA~~~l~~-l~~~~~~~~~l~~l~~~l~l~-~p~rIE~~D~Sh~~g~~~V~sm  399 (581)
T COG0322         324 SEAAGL--EIRVPKRGEKKSLLELATKNAKEALEQ-LKERSDEKQALEALAALLGLP-APYRIECFDISHIQGEDTVGSM  399 (581)
T ss_pred             HHHCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHCCC-CCEEEEEEECCCCCCCCCEEEE
T ss_conf             861477--312688655889999999999999999-885133568999999985889-8616898516753566644579


Q ss_pred             EEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH
Q ss_conf             88516872803232110244445541168998999999997753131112333333334545798489980985899999
Q gi|255764496|r  400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA  479 (616)
Q Consensus       400 Vvf~~g~~~K~~YR~f~Ik~~~v~~~DD~~~m~Evi~RR~~r~~~~~~~l~~~~~~~~~~~~~~PDLilIDGGkgQln~a  479 (616)
T Consensus       400 vvf~~g~~~k~~YRry~i~---~~~~dDya~m~evl~RR~~~~~~~----------------~~Pdli~iDGGkgQl~~a  460 (581)
T COG0322         400 VVFEDGGPSKKDYRRYNIK---ITGGDDYASMREVLTRRYSRLLKE----------------ELPDLILIDGGKGQLNAA  460 (581)
T ss_pred             EEECCCCCCHHHCCCCCCC---CCCCCHHHHHHHHHHHHHHHCCCC----------------CCCCEEEEECCHHHHHHH
T ss_conf             9976898775436522446---789755999999999886511125----------------799779996978899999


Q ss_pred             HHHHHHCCCCCCCCEEEEECCCCCCCCCEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHH
Q ss_conf             9999975887787189997187767663489817983488579989999999887877887889899864321-477100
Q gi|255764496|r  480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLD  558 (616)
Q Consensus       480 ~~vl~~l~i~~~i~viglaK~~~r~~~~e~~~~~~~~~i~l~~~~~~l~~Lq~iRDEaHRFAi~~hRk~r~k~-~~S~Ld  558 (616)
T Consensus       461 ~~vl~~l~~~--~~viglaK~~~-----~~~~~~~~~~~~l~~~~p~l~~lq~irDEaHrfAi~~hR~~R~k~~~~s~Ld  533 (581)
T COG0322         461 KEVLKELGLD--IPVIGLAKGEE-----ELLLPGPGEEFDLPPNSPALYLLQRIRDEAHRFAITYHRKKRSKAMLQSSLD  533 (581)
T ss_pred             HHHHHHCCCC--CCEEEEEECCC-----EEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999975998--61799971686-----0686699963127999889999999888999999998888766664027000


Q ss_pred             CCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             4888798999999998088898993898888627899989999999985
Q gi|255764496|r  559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF  607 (616)
Q Consensus       559 ~I~GIG~k~~~~Ll~~Fgs~~~i~~As~eeL~~v~gi~~~~A~~I~~~l  607 (616)
T Consensus       534 ~I~GiG~~r~~~LL~~Fgs~~~i~~As~eel~~v-gi~~~~a~~i~~~~  581 (581)
T COG0322         534 DIPGIGPKRRKALLKHFGSLKGIKSASVEELAKV-GISKKLAEKIYEAL  581 (581)
T ss_pred             CCCCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHC-CCCHHHHHHHHHHC
T ss_conf             4888688999999998317888885599999874-99999999998529