HHsearch alignment for GI: 255764496 and conserved domain: COG0322
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=1318.83 Aligned_cols=569 Identities=44% Similarity=0.723 Sum_probs=539.7
Q ss_pred HHHCCCCCCEEEEECCCCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCC
Q ss_conf 12586788625888699888899601258788876137887787999999734442999828719999999988776187
Q gi|255764496|r 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKP 82 (616)
Q Consensus 3 ~~~lP~~pGvY~~~~~~~~iiYvGKaknL~~Rv~syf~~~~~~~k~~~l~~~~~~ie~~~t~~e~eAlilE~~lIk~~~P 82 (616)
T Consensus 9 l~~lP~~PGvY~~~d~~g~VlYVGKAknLr~Rv~sYF~~~~~-~kt~~lv~~i~~iE~ivt~~E~EALlLE~nLIK~~~P 87 (581)
T COG0322 9 LKNLPHSPGVYLMKDENGTVLYVGKAKNLRKRVSSYFRGRLD-PKTAALVENIADIEYIVTDTETEALLLENNLIKKHKP 87 (581)
T ss_pred HHHCCCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHCCCCC-HHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 964899980389988999889996445678888986167985-8999999744663699748877788889867776389
Q ss_pred CCEECCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 20033646897726998088998459998123567843770378878999999999973011003554212478866244
Q gi|255764496|r 83 RFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLF 162 (616)
Q Consensus 83 ~yNi~LkDdk~yPyi~it~~~~~p~l~~~r~~~~~~~~yfGPf~~~~~~~~~l~~l~~~f~lR~C~~~~~~~~~~pCl~y 162 (616)
T Consensus 88 rYNvlLkDdKsYp~i~it~~e~~Pri~i~R~~~~~~~~yFGPy~s~~a~~~~l~ll~rlfplR~C~~~~~~~r~rpCl~Y 167 (581)
T COG0322 88 RYNVLLKDDKSYPYIKITLHEEFPRIAITRGLRKDKGKYFGPYPSAGAVRETLNLLQRLFPLRTCSDSVKRNRRRPCLYY 167 (581)
T ss_pred CEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCHHH
T ss_conf 61377425897762896367666432453011016873689878634689999999976113316886433457864441
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---
Q ss_conf 55425866131220356655543234550387158999999999999863338888889999999986221100024---
Q gi|255764496|r 163 QIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--- 239 (616)
Q Consensus 163 ~i~~C~gpC~~~is~~~Y~~~v~~~~~fL~G~~~~ii~~L~~~M~~aS~~l~FE~Aa~~RD~I~aL~~i~~~q~v~~--- 239 (616)
T Consensus 168 ~i~rC~apC~~~is~e~Y~e~v~~~~~fL~G~~~~v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~l~~~q~v~~~~~ 247 (581)
T COG0322 168 QIGRCLAPCVGLISEEEYREIVEEVKGFLKGKDDAVLQELEEKMEEASENLDFERAARLRDQIKALEKLQEKQAVSLFKL 247 (581)
T ss_pred HHCCCCCCEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 00255566005578999999999999997698899999999999999875147989999999999999974563356774
Q ss_pred CCCCHHHHCCCCCEEEEEEEEEECCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHEECCCCCHHHHHHHHH
Q ss_conf 54201110001883478899842474541011356677789978988877754321378981231026888578766654
Q gi|255764496|r 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISF 319 (616)
Q Consensus 240 ~d~Dvi~i~~~~~~~~I~vl~vR~G~i~g~~~f~~~~~~~~~~~eil~~fI~qyY~~~~iP~~Iiv~~~~~~~~~l~~~L 319 (616)
T Consensus 248 ~~~Dv~a~~~~~~~~~v~vf~~R~Gkllg~~~~f~-~~~-~~~~~-~~~fi~Q~Y~~~~~P~~Ill~~~~~~~~-l~~~l 323 (581)
T COG0322 248 QDLDVIAGAVDGGEACVQVFFVRGGKLLGRRAYFP-LEN-EAEEE-LEAFILQFYKSNEIPKEILLPQELPEEE-LEEAL 323 (581)
T ss_pred CCHHHHEEEECCCEEEEEEEEEECCHHCCCCCEEC-CCC-CCCHH-HHHHHHHHHCCCCCCCEEEECCCCCHHH-HHHHH
T ss_conf 11125023303986799987751431037754005-777-54057-9999999722788964578078877589-99999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf 32013433321256552667899999999986554323343389999999875156643516999707443775404888
Q gi|255764496|r 320 FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 (616)
Q Consensus 320 ~~k~g~kV~i~~P~rG~kk~Ll~lA~~NA~~~l~~k~~~~~~~~~~l~~Lk~~L~L~~~p~rIE~fDiSh~~G~~~Vas~ 399 (616)
T Consensus 324 ~~~~~~--~i~~p~~G~kk~l~~~A~~NA~~~l~~-l~~~~~~~~~l~~l~~~l~l~-~p~rIE~~D~Sh~~g~~~V~sm 399 (581)
T COG0322 324 SEAAGL--EIRVPKRGEKKSLLELATKNAKEALEQ-LKERSDEKQALEALAALLGLP-APYRIECFDISHIQGEDTVGSM 399 (581)
T ss_pred HHHCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHCCC-CCEEEEEEECCCCCCCCCEEEE
T ss_conf 861477--312688655889999999999999999-885133568999999985889-8616898516753566644579
Q ss_pred EEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH
Q ss_conf 88516872803232110244445541168998999999997753131112333333334545798489980985899999
Q gi|255764496|r 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 (616)
Q Consensus 400 Vvf~~g~~~K~~YR~f~Ik~~~v~~~DD~~~m~Evi~RR~~r~~~~~~~l~~~~~~~~~~~~~~PDLilIDGGkgQln~a 479 (616)
T Consensus 400 vvf~~g~~~k~~YRry~i~---~~~~dDya~m~evl~RR~~~~~~~----------------~~Pdli~iDGGkgQl~~a 460 (581)
T COG0322 400 VVFEDGGPSKKDYRRYNIK---ITGGDDYASMREVLTRRYSRLLKE----------------ELPDLILIDGGKGQLNAA 460 (581)
T ss_pred EEECCCCCCHHHCCCCCCC---CCCCCHHHHHHHHHHHHHHHCCCC----------------CCCCEEEEECCHHHHHHH
T ss_conf 9976898775436522446---789755999999999886511125----------------799779996978899999
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCCCCCEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHH
Q ss_conf 9999975887787189997187767663489817983488579989999999887877887889899864321-477100
Q gi|255764496|r 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLD 558 (616)
Q Consensus 480 ~~vl~~l~i~~~i~viglaK~~~r~~~~e~~~~~~~~~i~l~~~~~~l~~Lq~iRDEaHRFAi~~hRk~r~k~-~~S~Ld 558 (616)
T Consensus 461 ~~vl~~l~~~--~~viglaK~~~-----~~~~~~~~~~~~l~~~~p~l~~lq~irDEaHrfAi~~hR~~R~k~~~~s~Ld 533 (581)
T COG0322 461 KEVLKELGLD--IPVIGLAKGEE-----ELLLPGPGEEFDLPPNSPALYLLQRIRDEAHRFAITYHRKKRSKAMLQSSLD 533 (581)
T ss_pred HHHHHHCCCC--CCEEEEEECCC-----EEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999975998--61799971686-----0686699963127999889999999888999999998888766664027000
Q ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 4888798999999998088898993898888627899989999999985
Q gi|255764496|r 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 (616)
Q Consensus 559 ~I~GIG~k~~~~Ll~~Fgs~~~i~~As~eeL~~v~gi~~~~A~~I~~~l 607 (616)
T Consensus 534 ~I~GiG~~r~~~LL~~Fgs~~~i~~As~eel~~v-gi~~~~a~~i~~~~ 581 (581)
T COG0322 534 DIPGIGPKRRKALLKHFGSLKGIKSASVEELAKV-GISKKLAEKIYEAL 581 (581)
T ss_pred CCCCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHC-CCCHHHHHHHHHHC
T ss_conf 4888688999999998317888885599999874-99999999998529