HHsearch alignment for GI: 255764496 and conserved domain: COG5241
>COG5241 RAD10 Nucleotide excision repair endonuclease NEF1, RAD10 subunit [DNA replication, recombination, and repair].
Probab=91.07 E-value=0.18 Score=30.10 Aligned_cols=193 Identities=16% Similarity=0.082 Sum_probs=109.9
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEEEC---CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999987515664351699970744377540488888516---872803232110244445541168998999999997
Q gi|255764496|r 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE---NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFS 440 (616)
Q Consensus 364 ~~l~~Lk~~L~L~~~p~rIE~fDiSh~~G~~~Vas~Vvf~~---g~~~K~~YR~f~Ik~~~v~~~DD~~~m~Evi~RR~~ 440 (616)
T Consensus 15 ~~~~~~~~ksg~~~~~s~s~~I~vsplQkgnp~l~~~~N~~w~y~~~i~Pd~~---~---~s~~~~lflslr------fh 82 (224)
T COG5241 15 GVAKLRKEKSGADTTGSQSLEIDVSPLQKGNPQLSRRINSNWVYNAFIKPDEW---T---DSKATDLFLSLR------FH 82 (224)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCHHHCCCCCCCCCCCCCCEECCCCCCCHH---H---CCHHHHHHHHHH------HH
T ss_conf 99999886426567997135786476443897665431676233365586144---0---631899998876------40
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEECCCCCEEEE
Q ss_conf 75313111233333333454579848998098589999999999758877871899971877676634898179834885
Q gi|255764496|r 441 QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520 (616)
Q Consensus 441 r~~~~~~~l~~~~~~~~~~~~~~PDLilIDGGkgQln~a~~vl~~l~i~~~i~viglaK~~~r~~~~e~~~~~~~~~i~l 520 (616)
T Consensus 83 s~~Pey--i~-~riSklKsYk~r~LL~hvd~~N~~as-IqElv~Tt~i---------------------------nti~l 131 (224)
T COG5241 83 STRPEY--IV-LRISKLKSYKERPLLNHVDSTNWRAS-IQELVSTTGI---------------------------NTIYL 131 (224)
T ss_pred CCCCCE--EE-EEEECCCCCCCCCEEEEECCCCHHHH-HHHHHHHCCC---------------------------CEEEH
T ss_conf 478753--78-76411455443521444446108999-9999875351---------------------------02311
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH-HHH-------HHHC---CCCHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHH
Q ss_conf 79989999999887877887889899-864-------3214---771004888798999999998088898993898888
Q gi|255764496|r 521 NMRDPILYFIQRLRDEAHRFAITTHR-KRR-------KKAA---YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 (616)
Q Consensus 521 ~~~~~~l~~Lq~iRDEaHRFAi~~hR-k~r-------~k~~---~S~Ld~I~GIG~k~~~~Ll~~Fgs~~~i~~As~eeL 589 (616)
T Consensus 132 ~~----------svee~sry~~t~~~~~~~s~~iir~~~s~d~s~~fl~~i~~Vnksds~~~L~d~g~L~rf~gaSrdE~ 201 (224)
T COG5241 132 DY----------SVEERSRYFLTLTYHKLYSDYIIRRMQSLDRSNEFLILIFIVNKSDSEDTLNDIGKLCRFNGASRDEF 201 (224)
T ss_pred HH----------HHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 03----------16677899988579753278998734777656662588984446418989988878999856461588
Q ss_pred HHCCCCCHHHHHHHHHHHCC
Q ss_conf 62789998999999998547
Q gi|255764496|r 590 ASIEGISKKIACKIYNHFHK 609 (616)
Q Consensus 590 ~~v~gi~~~~A~~I~~~l~~ 609 (616)
T Consensus 202 e~l~g~g~~ka~~~ieyln~ 221 (224)
T COG5241 202 ELLLGFGFEKAAKYIEYLNL 221 (224)
T ss_pred HHHHCCCHHHHHHHHHHHCC
T ss_conf 99970088899999998546