HHsearch alignment for GI: 255764496 and conserved domain: PRK13901
>PRK13901 ruvA Holliday junction DNA helicase motor protein; Provisional.
Probab=97.32 E-value=0.00036 Score=49.65 Aligned_cols=60 Identities=25% Similarity=0.444 Sum_probs=51.5
Q ss_pred HHHCCCCHHCCCCCCHHHHHHHHHHHC---CHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 321477100488879899999999808---889899389888862789998999999998547
Q gi|255764496|r 550 KKAAYSPLDEINGIGPLRKRLLLQSFG---TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 (616)
Q Consensus 550 ~k~~~S~Ld~I~GIG~k~~~~Ll~~Fg---s~~~i~~As~eeL~~v~gi~~~~A~~I~~~l~~ 609 (616)
T Consensus 67 Er~~F~~LisVsGIGpk~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~ELk~ 129 (196)
T PRK13901 67 EREVFEELIGVDGIGPRAALRVLSGIKYNEFRDAIDREDIELISKVKGIGNKMAGKIFLKLRG 129 (196)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 999999987658826899999975799999999999289999831999589999999999976