HHsearch alignment for GI: 255764496 and conserved domain: TIGR00426
>TIGR00426 TIGR00426 competence protein ComEA helix-hairpin-helix repeat region; InterPro: IPR004509 This domain is found in competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This domain represents a region of two tandem copies of a helix-hairpin-helix domain, each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to this domain..
Probab=95.42 E-value=0.011 Score=38.88 Aligned_cols=51 Identities=24% Similarity=0.437 Sum_probs=42.5
Q ss_pred HCCCCHHC-CCCCCHHHHHHHHHH---HCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 14771004-888798999999998---088898993898888627899989999999985
Q gi|255764496|r 552 AAYSPLDE-INGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 (616)
Q Consensus 552 ~~~S~Ld~-I~GIG~k~~~~Ll~~---Fgs~~~i~~As~eeL~~v~gi~~~~A~~I~~~l 607 (616)
T Consensus 14 AtaeElq~~~~GvG~kKAeAIv~YREe~G~F~-----t~Edl~~V~GiG~~~~Ek~~~~i 68 (70)
T TIGR00426 14 ATAEELQKALSGVGAKKAEAIVAYREEYGRFK-----TVEDLKKVSGIGEKLLEKNKASI 68 (70)
T ss_pred HCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC-----CHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 04788887642887237899988753277957-----62223214787624555564430