HHsearch alignment for GI: 255764496 and conserved domain: TIGR00596
>TIGR00596 rad1 DNA repair protein (rad1); InterPro: IPR006167 All proteins in this family, for which functions are known, are components in a multiprotein endonuclease complex, usually made up of Rad1 and Rad10 homologues. This complex is used primarily for nucleotide excision repair but also for some aspects of recombinational repair in some species. Most Archaeal species also have homologues of these genes, but the function of the Archaeal proteins is not known, so are not included in this family.; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity, 0006281 DNA repair.
Probab=96.91 E-value=0.0012 Score=45.78 Aligned_cols=56 Identities=21% Similarity=0.377 Sum_probs=52.1
Q ss_pred CHHCCCCCCHHHHHHHHHH-HCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 1004888798999999998-08889899389888862789998999999998547867
Q gi|255764496|r 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 (616)
Q Consensus 556 ~Ld~I~GIG~k~~~~Ll~~-Fgs~~~i~~As~eeL~~v~gi~~~~A~~I~~~l~~~~~ 612 (616)
T Consensus 882 rLl~~PGV~~kN~rnl~~~G~k~~~el~~~S~~El~eL~g-~~e~a~~lY~Fl~~~~~ 938 (939)
T TIGR00596 882 RLLKLPGVTKKNIRNLLKKGVKSIRELAKLSQEELEELIG-DEEAAKRLYDFLRKELL 938 (939)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCC
T ss_conf 8557898560234555543155599999987999997507-97576689999876307