HHsearch alignment for GI: 255764496 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=96.66 E-value=0.0019 Score=44.48 Aligned_cols=145 Identities=21% Similarity=0.179 Sum_probs=77.2
Q ss_pred HHHHHHCCCCCCCCC--CCCCCH---HHHHHHHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHCCCCC-CCEE
Q ss_conf 654320134333212--565526---67899999999986554323--3------43389999999875156643-5169
Q gi|255764496|r 317 ISFFKQYGYKVKITV--PKQGEK---RKIIEQALINAHRSHTQKLS--T------EISHQMILKDFTKKFALPHI-PKRI 382 (616)
Q Consensus 317 ~~L~~k~g~kV~i~~--P~rG~k---k~Ll~lA~~NA~~~l~~k~~--~------~~~~~~~l~~Lk~~L~L~~~-p~rI 382 (616)
T Consensus 357 ~AL~~~~~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAAkRl~E~TG~~a~TIHRL 436 (769)
T TIGR01448 357 EALKTAIQDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAAKRLAEVTGLEALTIHRL 436 (769)
T ss_pred HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999860948998577888616899999999987168775531245677648873774378885110026212347786
Q ss_pred EEEECCCCCCCCCEEEEEEEECCCCC-HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99707443775404888885168728-03232110244445541168998999999997753131112333333334545
Q gi|255764496|r 383 EIYDNSHIMGCSAVGCMVVVGENGFV-KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP 461 (616)
Q Consensus 383 E~fDiSh~~G~~~Vas~Vvf~~g~~~-K~~YR~f~Ik~~~v~~~DD~~~m~Evi~RR~~r~~~~~~~l~~~~~~~~~~~~ 461 (616)
T Consensus 437 lG~~~~----------------~~~~~k~~~~~~~~---DL~IvDE~SM~Dt~L~~~lL~a------------------- 478 (769)
T TIGR01448 437 LGYGSD----------------TKSENKNLEDPIDA---DLLIVDESSMVDTWLASSLLAA------------------- 478 (769)
T ss_pred HCCCCC----------------CCCCCHHHCCCCCC---CEEEEECCCHHHHHHHHHHHHH-------------------
T ss_conf 368988----------------87321101134787---7699814621889999999861-------------------
Q ss_pred CCCC--EEEEECCHHHHHHH--HHHHHHCCCCCCCCEEEEECC
Q ss_conf 7984--89980985899999--999997588778718999718
Q gi|255764496|r 462 SWPD--VVILDGGKGQLSAA--QGVLKKLNVENRITIISIAKG 500 (616)
Q Consensus 462 ~~PD--LilIDGGkgQln~a--~~vl~~l~i~~~i~viglaK~ 500 (616)
T Consensus 479 -~P~~a~lllVGD~DQLPSV~pG~VL~DLi~s~~iP~~~LT~v 520 (769)
T TIGR01448 479 -VPDHARLLLVGDADQLPSVGPGQVLKDLIQSKVIPVTRLTKV 520 (769)
T ss_pred -CCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEECCCE
T ss_conf -797777988837688898864408999984688661212111