HHsearch alignment for GI: 255764496 and conserved domain: cd00128
>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases. XPG is a eukaryotic enzyme that functions in nucleotide-excision repair and transcription-coupled repair of oxidative DNA damage. Functionally/structurally related to FEN-1; divalent metal ion-dependent exo- and endonuclease, and bacterial and bacteriophage 5'3' exonucleases.
Probab=94.70 E-value=0.063 Score=33.44 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=36.3
Q ss_pred CCHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 710048887989999999980888989938988886278999899999999854
Q gi|255764496|r 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 (616)
Q Consensus 555 S~Ld~I~GIG~k~~~~Ll~~Fgs~~~i~~As~eeL~~v~gi~~~~A~~I~~~l~ 608 (616)
T Consensus 223 Dy~~gi~giG~k~A~kli~~~~~~e~~~~~l~~~~~~~~~~~~--~~~~~~~f~ 274 (316)
T cd00128 223 DYTEGIPGIGPVTALKLIKKYGDIEKDIERLKKKLYRSPEDFP--LKEAREFFL 274 (316)
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC--HHHHHHHHC
T ss_conf 8789999735999999999919999999999834876999999--799999857