HHsearch alignment for GI: 255764496 and conserved domain: cd06559

>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=96.89  E-value=0.0018  Score=44.56  Aligned_cols=104  Identities=18%  Similarity=0.126  Sum_probs=61.3

Q ss_pred             CCCCEEEEEECCCCC-CCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH--HHHHHHHHCCCCCCCCCC
Q ss_conf             435169997074437-75404888885168728032321102444455411689989999--999977531311123333
Q gi|255764496|r  377 HIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL--ERRFSQLIKNEENLNFHP  453 (616)
Q Consensus       377 ~~p~rIE~fDiSh~~-G~~~Vas~Vvf~~g~~~K~~YR~f~Ik~~~v~~~DD~~~m~Evi--~RR~~r~~~~~~~l~~~~  453 (616)
T Consensus        23 ~~~~~VaGvDvsy~~~~~~~~a~~Vv~~~~~l-~~v~~~~~~~~~~fPYIPG~LaFRE~p~~l~a~~~l~----------   91 (208)
T cd06559          23 GEVRLVAGVDVSYKKDGDLAVAAAVVLDYPDL-EVVETAVAVGEVTFPYIPGLLAFREGPPLLEALEKLK----------   91 (208)
T ss_pred             CCCEEEEEEEEEEECCCCEEEEEEEEEECCCC-EEEEEEEEEEEECCCCCCCHHHHCCCHHHHHHHHHCC----------
T ss_conf             98429999998787599889999999987997-4999999985304665540343301489999998557----------


Q ss_pred             CCCCCCCCCCCCEEEEEC-CHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             333345457984899809-85899999999997588778718999718
Q gi|255764496|r  454 KKQEYSFPSWPDVVILDG-GKGQLSAAQGVLKKLNVENRITIISIAKG  500 (616)
Q Consensus       454 ~~~~~~~~~~PDLilIDG-GkgQln~a~~vl~~l~i~~~i~viglaK~  500 (616)
T Consensus        92 --------~~PdlllvDG~Gi~HPR~~G-lAsHlGv~l~~PtIGVAK~  130 (208)
T cd06559          92 --------TKPDLLLVDGHGIAHPRRFG-LASHLGVLLDLPTIGVAKS  130 (208)
T ss_pred             --------CCCCEEEECCCCCCCCCCCC-HHEEEEEECCCCCCCCCCC
T ss_conf             --------79999998688752665547-0103455528783342154