HHsearch alignment for GI: 255764496 and conserved domain: cd06559
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=96.89 E-value=0.0018 Score=44.56 Aligned_cols=104 Identities=18% Similarity=0.126 Sum_probs=61.3
Q ss_pred CCCCEEEEEECCCCC-CCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH--HHHHHHHHCCCCCCCCCC
Q ss_conf 435169997074437-75404888885168728032321102444455411689989999--999977531311123333
Q gi|255764496|r 377 HIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL--ERRFSQLIKNEENLNFHP 453 (616)
Q Consensus 377 ~~p~rIE~fDiSh~~-G~~~Vas~Vvf~~g~~~K~~YR~f~Ik~~~v~~~DD~~~m~Evi--~RR~~r~~~~~~~l~~~~ 453 (616)
T Consensus 23 ~~~~~VaGvDvsy~~~~~~~~a~~Vv~~~~~l-~~v~~~~~~~~~~fPYIPG~LaFRE~p~~l~a~~~l~---------- 91 (208)
T cd06559 23 GEVRLVAGVDVSYKKDGDLAVAAAVVLDYPDL-EVVETAVAVGEVTFPYIPGLLAFREGPPLLEALEKLK---------- 91 (208)
T ss_pred CCCEEEEEEEEEEECCCCEEEEEEEEEECCCC-EEEEEEEEEEEECCCCCCCHHHHCCCHHHHHHHHHCC----------
T ss_conf 98429999998787599889999999987997-4999999985304665540343301489999998557----------
Q ss_pred CCCCCCCCCCCCEEEEEC-CHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 333345457984899809-85899999999997588778718999718
Q gi|255764496|r 454 KKQEYSFPSWPDVVILDG-GKGQLSAAQGVLKKLNVENRITIISIAKG 500 (616)
Q Consensus 454 ~~~~~~~~~~PDLilIDG-GkgQln~a~~vl~~l~i~~~i~viglaK~ 500 (616)
T Consensus 92 --------~~PdlllvDG~Gi~HPR~~G-lAsHlGv~l~~PtIGVAK~ 130 (208)
T cd06559 92 --------TKPDLLLVDGHGIAHPRRFG-LASHLGVLLDLPTIGVAKS 130 (208)
T ss_pred --------CCCCEEEECCCCCCCCCCCC-HHEEEEEECCCCCCCCCCC
T ss_conf --------79999998688752665547-0103455528783342154