HHsearch alignment for GI: 255764496 and conserved domain: pfam01541
>pfam01541 GIY-YIG GIY-YIG catalytic domain. This domain called GIY-YIG is found in the amino terminal region of excinuclease abc subunit c (uvrC), bacteriophage T4 endonucleases segA, segB, segC, segD and segE; it is also found in putative endonucleases encoded by group I introns of fungi and phage. The structure of I-TevI a GIY-YIG endonuclease, reveals a novel alpha/beta-fold with a central three-stranded antiparallel beta-sheet flanked by three helices. The most conserved and putative catalytic residues are located on a shallow, concave surface and include a metal coordination site.
Probab=99.36 E-value=9.3e-13 Score=111.56 Aligned_cols=76 Identities=33% Similarity=0.524 Sum_probs=64.1
Q ss_pred CCCEEEEECCCCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCC-CCE
Q ss_conf 88625888699888899601258788876137887787999999734442999828719999999988776187-200
Q gi|255764496|r 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKP-RFN 85 (616)
Q Consensus 9 ~pGvY~~~~~~~~iiYvGKaknL~~Rv~syf~~~~~~~k~~~l~~~~~~ie~~~t~~e~eAlilE~~lIk~~~P-~yN 85 (616)
T Consensus 1 ~~gVY~i~~~~~~~~YIG~t~nl~~R~~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~E~~lI~~~~~~~yN 77 (77)
T pfam01541 1 KPGVYIITNKDNKVLYVGSTKNLKRRLKQHFSGKG-AKKTRNKAKPFELIILEEFPTKEEALELEKYLIKKYKPNKYN 77 (77)
T ss_pred CCEEEEEEECCCCEEEEEEECCHHHHHHHHHCCCC-CCCEEECCCEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99899999689899999873799999999975799-987872121389999999499999999999998986878999