HHsearch results for GI: 255764496 and protein with PDBid: 2a1j_B

>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5

Probab=99.12  E-value=1.2e-10  Score=94.65  Aligned_cols=58  Identities=21%  Similarity=0.396  Sum_probs=55.2

Q ss_pred             CCCCHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf             4771004888798999999998088898993898888627899989999999985478
Q gi|255764496|r  553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN  610 (616)
Q Consensus       553 ~~S~Ld~I~GIG~k~~~~Ll~~Fgs~~~i~~As~eeL~~v~gi~~~~A~~I~~~l~~~  610 (616)
                      +.+.|+.|+|||+++.+.|+++|||+++|.+||.+||.+++|||+++|+.|+++||+.
T Consensus        30 ~~~~L~~I~gIGk~~A~~L~~~F~Si~~l~~As~eeL~~i~GIG~~~A~~I~~~f~~p   87 (91)
T 2a1j_B           30 VTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEP   87 (91)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHSC
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
T ss_conf             9998646888599999999999588298999899975577996999999999998481