HHsearch results for GI: 255764496 and protein with PDBid: 2nrt_A
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=100.00 E-value=0 Score=533.17 Aligned_cols=214 Identities=33% Similarity=0.583 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89999999875156643516999707443775404888885168728032321102444455411689989999999977
Q gi|255764496|r 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQ 441 (616)
Q Consensus 362 ~~~~l~~Lk~~L~L~~~p~rIE~fDiSh~~G~~~Vas~Vvf~~g~~~K~~YR~f~Ik~~~v~~~DD~~~m~Evi~RR~~r 441 (616)
++.+|++|++.|+|+++|+|||||||||++|+++|||||||.+|+|.|+.||+|+|+. .++|||+||+||++|||++
T Consensus 5 ~~~~l~~L~~~l~l~~~p~rIE~fDiSh~~G~~~V~s~Vvf~~g~~~k~~YR~y~ik~---~~~dDy~~m~evl~Rr~~~ 81 (220)
T 2nrt_A 5 RKEALEELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFPKKGDYRRYKIEQ---DHPDDYESIRTVVKRRYSK 81 (220)
T ss_dssp CHHHHHHHHHHTTCSSCCCEEEEEEEEEETTTEEEEEEEEEETTEECGGGCEEEEEEC---SSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHCCCC---CCCHHHHHHHHHHHHHCCC
T ss_conf 9999999999819999988599998975589874599999807987666656625788---8970799999999983045
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEECCCCCEEEEC
Q ss_conf 53131112333333334545798489980985899999999997588778718999718776766348981798348857
Q gi|255764496|r 442 LIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLN 521 (616)
Q Consensus 442 ~~~~~~~l~~~~~~~~~~~~~~PDLilIDGGkgQln~a~~vl~~l~i~~~i~viglaK~~~r~~~~e~~~~~~~~~i~l~ 521 (616)
.++|||||||||+||||+|.++|++++++ ++++|++|.++ ++..++.++.|+
T Consensus 82 -------------------~~~PDLilIDGGkgQL~~a~~~l~~~~~~--i~~~~~~k~~~-------~~~~~~~~i~l~ 133 (220)
T 2nrt_A 82 -------------------HPLPNLLFVDGGIGQVNAAIEALKEIGKD--CPVVGLAKKEE-------TVVFENREIHLP 133 (220)
T ss_dssp -------------------SCCCSEEEESSSHHHHHHHHHHHHHTTCC--CCEEEECTTTC-------CEEETTEEECCC
T ss_pred -------------------CCCCEEEEEECCHHHHHHHHHHHHHCCCC--CHHHCCCCCCE-------EECCCCCEEECC
T ss_conf -------------------89985899819999999999998740776--21220356542-------661799435569
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCHHHH
Q ss_conf 9989999999887877887889899864321-477100488879899999999808889899389888862789998999
Q gi|255764496|r 522 MRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 (616)
Q Consensus 522 ~~~~~l~~Lq~iRDEaHRFAi~~hRk~r~k~-~~S~Ld~I~GIG~k~~~~Ll~~Fgs~~~i~~As~eeL~~v~gi~~~~A 600 (616)
.++++|+|||+||||||||||+|||++|+|. +.|.||+||||||+|+++||+||||+++|++||++||++|+|+ +++|
T Consensus 134 ~~~~~~~~Lq~iRDEaHRFAi~~hRk~r~k~~~~S~Ld~I~GIG~k~~~~Ll~~Fgs~~~I~~As~eeL~~v~g~-~k~A 212 (220)
T 2nrt_A 134 HDHPVLRLLVQIRDETHRFAVSYHRKRREKESLRSVLDNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARVIGS-TEIA 212 (220)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHCSHHHHHTSCHHHHHHHHTC-HHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCC-HHHH
T ss_conf 999899999999999989879879999752103464100379699999999998189999971899999868695-9999
Q ss_pred HHHHHHH
Q ss_conf 9999985
Q gi|255764496|r 601 CKIYNHF 607 (616)
Q Consensus 601 ~~I~~~l 607 (616)
++||++|
T Consensus 213 ~~I~~~l 219 (220)
T 2nrt_A 213 RRVLDIL 219 (220)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
T ss_conf 9999971