HHsearch results for GI: 255764496 and protein with PDBid: 3ho1_A
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, plasmid; 2.60A {Thermus thermophilus HB27} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=96.72 E-value=0.02 Score=35.44 Aligned_cols=112 Identities=12% Similarity=0.084 Sum_probs=63.7
Q ss_pred CCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHH--HCCCCCCCCCHHH-HHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 6435169997074437754048888851687280323211--0244445541168-998999999997753131112333
Q gi|255764496|r 376 PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF--NLHPNDVKTQDDC-AMMRMVLERRFSQLIKNEENLNFH 452 (616)
Q Consensus 376 ~~~p~rIE~fDiSh~~G~~~Vas~Vvf~~g~~~K~~YR~f--~Ik~~~v~~~DD~-~~m~Evi~RR~~r~~~~~~~l~~~ 452 (616)
+..|.-|-|+|++|=.+ ..++|+|.--+.... .|+.. ..........+|. .+|.+.|...+..
T Consensus 468 ~~~~~miiG~DV~h~~~-~s~~~~vas~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~----------- 533 (685)
T 3ho1_A 468 AYPAELAVGFDAGGRES-FRFGGAACAVGGDGG--HLLWTLPEAQAGERIPQEVVWDLLEETLWAFRRK----------- 533 (685)
T ss_dssp CCSCSEEEEEEEEETTE-EEEEEEEEEECC--C--CCEEECCCCCCSCCCHHHHHHHHHHHHHHHHHHH-----------
T ss_pred CCCCCEEEEEEEECCCC-CCEEEEEEEECCCCC--EEEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHH-----------
T ss_conf 99982899999836999-965899999818998--8889899714883763989999999999999998-----------
Q ss_pred CCCCCCCCCCCCCEEEE--EC--CHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEECCCC
Q ss_conf 33333454579848998--09--85899999999997588778718999718776766348981798
Q gi|255764496|r 453 PKKQEYSFPSWPDVVIL--DG--GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 (616)
Q Consensus 453 ~~~~~~~~~~~PDLilI--DG--GkgQln~a~~vl~~l~i~~~i~viglaK~~~r~~~~e~~~~~~~ 515 (616)
.+.+|+-|+| || ..+++.++++++++++. ++.+|.+.|... -++++.++
T Consensus 534 -------~~~~P~~IiiyRDG~v~~~E~~~i~~~~~~~~~--~~~~i~V~k~~~-----~R~f~~~~ 586 (685)
T 3ho1_A 534 -------AGRLPSRVLLLRNGRVPQDEFALALEALAREGI--AYDLVSVRKSGG-----GRVYPVQG 586 (685)
T ss_dssp -------HSSCCSEEEEEECSSSCSGGGHHHHHHHHHTTC--EEEEEEEESSCC-----CCEEESSS
T ss_pred -------HCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--CEEEEEEECCCC-----CEEECCCC
T ss_conf -------489975699961687668999999999875199--589999983687-----20316899